RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8454
(936 letters)
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 173 bits (442), Expect = 8e-49
Identities = 61/316 (19%), Positives = 97/316 (30%), Gaps = 68/316 (21%)
Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL---ENKRKVTPLQNA---NNLHVA 673
V GD+ LH A + + LL A +N T L A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 674 K-LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRP- 731
+ L A V A R G
Sbjct: 62 EKLYAAGA---------------------------------GVLVAE------RGGHTAL 82
Query: 732 -----RNITEIKKVEQLFALIEN--NEIKLIKSYFGLSNEEKVPDNACHPLCQCAK--CK 782
V L++ + + + +++ PD + P ++ +
Sbjct: 83 HLACRVRAHTCACV-----LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137
Query: 783 EDVVES-ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ 841
+ E + + N DG+T LH+A ++VRLL + AD+N
Sbjct: 138 NEEEPRDEDWRL-----QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901
TPLH+A + S++ LLL A + A+ Y G T L A + + LA LL GA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Query: 902 QIKNHYGQTCLHMAQQ 917
+ +
Sbjct: 252 PEDGGDKLSPCSSSGS 267
Score = 137 bits (347), Expect = 3e-36
Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 14/172 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLL 575
+ G T LH+A ++ +D +L A + Q+ G + LH AA G + + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLNINAVNNQGDSP- 630
+GA + + + G+TALHLA TC L+ + + D+
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 631 ---LHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ D EN TPL A + + +LL
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177
Score = 134 bits (341), Expect = 2e-35
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D + + + +++ G +PLH A ++ LL +G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 579 ASINLTD-NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A +N + G T LHLA + ++ L+ + + A G +PL +A
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLL---KA---GADPTARMYGGRTPLGSALLR 235
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
+ +LL HGA + K++P ++ ++ + Y
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 132 bits (334), Expect = 2e-34
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHS 577
+ G T LHVA ++ ++V L+ + GAD N + CG +PLH A +VL LLL +
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA G T L A + + L SP ++
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAH------GAPEPEDGGDKLSPCSSSGSD 268
Query: 638 GYTSIIQLLLDHG 650
+ ++
Sbjct: 269 SDSDNRDEGDEYD 281
Score = 131 bits (331), Expect = 5e-34
Identities = 41/170 (24%), Positives = 58/170 (34%), Gaps = 12/170 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+D G T LH+AA+ G V+ + GA + G + LH A +LL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 579 ASINLTDNEGNTALHLATN--NGHETCVKALIYFNEQEVLNL------NINAVNNQGDSP 630
S ++ H E E + A N G +P
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 631 LHAAARWGYTSIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
LH A +++LL D GA+ E TPL A V +LL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Score = 119 bits (301), Expect = 5e-30
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINI------------VTRVKQLTPLH 846
+ + G+TALH+A + + +L+ R T P
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK-N 905
+ Q N + + + A++Y G+T LH A I+ + LL +GA
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
G+T LH+A + + S++ +L
Sbjct: 190 TCGRTPLHLAVEAQAASVLELL 211
Score = 114 bits (287), Expect = 4e-28
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+ + + + + + ++R + TPLH+A + + +
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEM 173
Query: 857 VRLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
VRLL A ++N + G T LH A ++ LLLK+GA P + + G+T L A
Sbjct: 174 VRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Query: 916 QQMTSLSLVRVL 927
+ L R+L
Sbjct: 233 LLRPNPILARLL 244
Score = 111 bits (279), Expect = 4e-27
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 16/143 (11%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ N G TALH+A LG V L A + + R T LH+AC+ +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCAC 95
Query: 859 LLLAAKQCNVNAQDYRGNT--------------ALHYAAINNHTNLATLLLKSGARPQIK 904
+LL + + A + N + + +
Sbjct: 96 VLLQPR-PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 905 NHYGQTCLHMAQQMTSLSLVRVL 927
N+ G T LH+A +VR+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL 177
Score = 110 bits (278), Expect = 6e-27
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 12/136 (8%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGA---SINLTDNEGNTALHLATNNGHETCVK 605
G + LH A H+ L LL A ++L ++ G TALHLA G + V+
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 606 ALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL- 664
L + G + LH A R + +LL + +
Sbjct: 63 KLY---AAGA---GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116
Query: 665 --QNANNLHVAKLLNA 678
+ H +++
Sbjct: 117 QDCTPDTSHAPAAVDS 132
Score = 110 bits (277), Expect = 8e-27
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 799 NINICNSD-GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
++N G T LH+A ++ LL+ AD + TPL A N +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRPNPILA 241
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
RLL A + + ++ ++ +
Sbjct: 242 RLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 97.6 bits (244), Expect = 2e-22
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 843 TPLHIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
T LH+A + + + LL A ++ Q+ G TALH AAI + L +GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ G T LH+A ++ + + VL
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVL 97
Score = 91.8 bits (229), Expect = 2e-20
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
+G+TALHLA + HE + L+ + ++ N+ G + LH AA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSAGHEYLDLQNDLGQTALHLAAILGEA 58
Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
S ++ L GA + + T L A A +L
Sbjct: 59 STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
Score = 63.3 bits (155), Expect = 7e-11
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLHMAQQMTSLSLV 924
G+TALH A I+ H LL A + ++N GQT LH+A + S V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 925 RVL 927
L
Sbjct: 62 EKL 64
Score = 41.4 bits (98), Expect = 8e-04
Identities = 4/31 (12%), Positives = 6/31 (19%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
D + + S D Y
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 157 bits (399), Expect = 3e-44
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ G V L L+ D N D G SPLH+A G V+ +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA IN+ + +T LHLA ++GH V+ L+ + + +INAVN G+ PLH A W
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLL---QYKA---DINAVNEHGNVPLHYACFW 115
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G + + L+ +GA ++ NK P+ A + +
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Score = 146 bits (371), Expect = 1e-40
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD GF+ LH A GR VV++++ GA N + +PLH AA+ GH++++ LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A IN + GN LH A G + + L+ ++ N G+ P+ A
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLV---ANGA---LVSICNKYGEMPVDKAKAPL 149
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673
+ + G N N
Sbjct: 150 RELLRERAEKMGQNL------------NRIPYKDT 172
Score = 143 bits (364), Expect = 1e-39
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G++ LH A G +V +LI A IN++ R TPLH+A + + IV+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGHRDIVQ 89
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL K ++NA + GN LHYA +A L+ +GA I N YG+ + A+
Sbjct: 90 KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP 148
Query: 919 TSLSLVRVL 927
L
Sbjct: 149 LRELLRERA 157
Score = 122 bits (308), Expect = 5e-32
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRA-DINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
+ + + G+ VRL ++ D+N +PLH AC+ ++V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIM 60
Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
+N + +T LH AA + H ++ LL+ A N +G LH A
Sbjct: 61 RG-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 923 LVRVL 927
+ L
Sbjct: 120 VAEDL 124
Score = 119 bits (301), Expect = 3e-31
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
IN+ N T LH+A S GH D+V+ L+ Y+ADIN V PLH AC +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQDQVAE 122
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+A V+ + G + A L K G
Sbjct: 123 DLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 78.6 bits (195), Expect = 6e-17
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++ G LH A +G+ +V + ++ GA + + G P+ A + + G
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
Query: 579 ASINLTDNEGNTALHLATNNGH 600
++N G
Sbjct: 162 QNLNRIP------YKDTFWKGT 177
Score = 60.5 bits (148), Expect = 1e-10
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQN 851
++ICN G + A + L ++N P
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR-------IPYKDTFWK 175
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 156 bits (397), Expect = 3e-44
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
+H A G + + +E N D G +PL +AA G V+ LL +GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
L +AL LA + G+ VK L+ + V ++N + G +PL A +
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLL---DCGV---DVNEYDWNGGTPLLYAVHGNHV 115
Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++LL+ GA+PT+E + A V +++
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 148 bits (377), Expect = 2e-41
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ GFT L AA +G+I VV+ +L+ GAD S L A ++G+ +++ +LL G
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N D G T L A + H CVK L+ E + + G + + A G
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLL---ESGA---DPTIETDSGYNSMDLAVALG 146
Query: 639 YTSIIQLLLDHGANPTLENK 658
Y S+ Q++ H K
Sbjct: 147 YRSVQQVIESHLLKLLQNIK 166
Score = 140 bits (356), Expect = 1e-38
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
IN + +G+T L A + G +V L+ AD ++ + + + L +AC IV+
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVK 86
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL +VN D+ G T L YA NH +LL+SGA P I+ G + +A +
Sbjct: 87 MLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145
Query: 919 TSLSLVRVL 927
S+ +V+
Sbjct: 146 GYRSVQQVI 154
Score = 124 bits (315), Expect = 3e-33
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
++H + G + I IN + TPL A + +++V LL
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNG- 59
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ +AL A +T++ +LL G + G T L A + V+
Sbjct: 60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 926 VL 927
+L
Sbjct: 120 ML 121
Score = 119 bits (300), Expect = 3e-31
Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + +AL +A S G+ D+V++L++ D+N TPL A N++ V+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVK 119
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
+LL + + + G ++ A + ++ ++ +
Sbjct: 120 MLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 76.7 bits (190), Expect = 2e-16
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T L A +K V ++LE GAD + G + + A G+++V ++
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Query: 579 ASINLTDNE 587
+ E
Sbjct: 159 LKLLQNIKE 167
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 163 bits (415), Expect = 1e-43
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+GFT LHVAA YG+++V +L+LE A N+ G +PLH A + +++ LLL G
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
S + G T LH+A ++L+ + + NA + QG +PLH AA+ G
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLL---QYGG---SANAESVQGVTPLHLAAQEG 256
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ ++ LLL AN L NK +TPL ++ VA +L
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 161 bits (411), Expect = 5e-43
Identities = 54/161 (33%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T LH AA G +V L+LE A+ N G +PLH AA GH +L LL
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
AS +G T LH+A G + L+ E++ + NA G +PLH A
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDA---HPNAAGKNGLTPLHVAVHHN 190
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
I++LLL G +P TPL A N + VA+ L
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Score = 160 bits (408), Expect = 1e-42
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G+T LH+AA +++V +L+ G N++ + G +PLH AA GH ++ LLL
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ NL + G T LHL GH LI + V ++A G +PLH A+ +G
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLI---KHGV---MVDATTRMGYTPLHVASHYG 322
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++ LL H A+ + K +PL A + + LL
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 159 bits (406), Expect = 2e-42
Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T LHVA+ G + +V +L+ GA N ++ +PLH AA GH V LL +
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N + T LH A GH VK L+ E N N G +PLH AAR G
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLL---ENNA---NPNLATTAGHTPLHIAAREG 124
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + LL+ A+ K+ TPL A + VA+LL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 149 bits (378), Expect = 1e-38
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T LH+ A G + V D++++ G ++ G +PLH A+ G+ ++ LL
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N G + LH A GH V L+ + + N V++ G +PL A R G
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLL---KNGA---SPNEVSSDGTTPLAIAKRLG 388
Query: 639 YTSIIQLL---LDHGANPTLENKRKVTPLQNANNL 670
Y S+ +L D + + +K +++ + + +
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423
Score = 147 bits (374), Expect = 3e-38
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N N+ N G T LH+ GH + +LI + ++ TR+ TPLH+A N+ +V+
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLVK 328
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL Q +VNA+ G + LH AA HT++ TLLLK+GA P + G T L +A+++
Sbjct: 329 FLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Query: 919 TSLSLVRVL 927
+S+ VL
Sbjct: 388 GYISVTDVL 396
Score = 145 bits (369), Expect = 2e-37
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + +GYT LHIA ++ R L+ Y N + + +TPLH+A Q + +V
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVA 262
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL+ KQ N N + G T LH A H +A +L+K G G T LH+A
Sbjct: 263 LLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 919 TSLSLVRVL 927
++ LV+ L
Sbjct: 322 GNIKLVKFL 330
Score = 141 bits (359), Expect = 3e-36
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ G T LH+A+ +GH +V+ L+ A N+ VK TPLH+A + + + +
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAK 64
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL K VNA+ T LH AA HTN+ LLL++ A P + G T LH+A +
Sbjct: 65 YLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 919 TSLSLVRVL 927
+ V L
Sbjct: 124 GHVETVLAL 132
Score = 141 bits (358), Expect = 4e-36
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ G+T LH+A G + LL+ A N + LTPLH+A +NNL IV+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVK 196
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL + + ++ + G T LH AA N +A LL+ G ++ G T LH+A Q
Sbjct: 197 LLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Query: 919 TSLSLVRVL 927
+V +L
Sbjct: 256 GHAEMVALL 264
Score = 138 bits (349), Expect = 5e-35
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N D T LH A +GH ++V+LL+ A+ N+ T TPLHIA + ++ V
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVL 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL K+ + +G T LH AA +A LLL+ A P G T LH+A
Sbjct: 131 ALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
Query: 919 TSLSLVRVL 927
+L +V++L
Sbjct: 190 NNLDIVKLL 198
Score = 136 bits (344), Expect = 2e-34
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
G G +PLH A+ GH ++ LL GAS N+++ + T LH+A GH
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
K L+ + + +NA +PLH AAR G+T++++LLL++ ANP L TPL
Sbjct: 64 KYLL---QNKA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Query: 665 QNA---NNLHVAKLL 676
A ++ L
Sbjct: 118 HIAAREGHVETVLAL 132
Score = 129 bits (327), Expect = 4e-32
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ GYT LH+A+ G+ LV+ L+ ++AD+N T++ +PLH A Q + IV
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SPLHQAAQQGHTDIVT 361
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL---LKSGARPQIKNHYGQTCLHMA 915
LLL + N G T L A + ++ +L + + + + +
Sbjct: 362 LLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Query: 916 QQMTSLS 922
++ +S
Sbjct: 421 DEILDVS 427
Score = 128 bits (325), Expect = 7e-32
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G+T LHVA+ YG IK+V +L+ AD N++ G SPLH AA +GH +++ LLL +G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
AS N ++G T L +A G+ + L ++ + + S
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS---FVLVSDKHRMSFPE------ 418
Query: 639 YTSIIQLLLDHGANP 653
+ +LD +
Sbjct: 419 ---TVDEILDVSEDE 430
Score = 70.2 bits (173), Expect = 9e-13
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ G T LH A+ H + LL+ GA P + N +T LHMA + + +
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64
Query: 926 VL 927
L
Sbjct: 65 YL 66
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 157 bits (399), Expect = 2e-43
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ LH AA G + + ++++ GA+ ++ +PL AA H + L+ +G
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A ++ D EG+T LHLA GH V+ L+ +++N ++ G +P+ A +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLL-----SNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ +++LLL G++ + + + L A + +A++L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Score = 154 bits (393), Expect = 8e-43
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 10/165 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D G T LH+AA G +VV +L G D N QD G +P+ +A H +++ LLL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
G+ IN+ DNE N LH A +G + L+ + +++AVN GDSPLH AAR
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKC---DLHAVNIHGDSPLHIAARE 187
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
+ L L ++ TL+NK TPLQ A + + A ++
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 141 bits (357), Expect = 6e-38
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
NI+ C+ D T L A H + V+ LI A ++ + T LH+A + + +V+
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQ 94
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL+ Q +VN QD G T + +A H +L LLL G+ I+++ CLH A
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154
Query: 919 TSLSLVRVL 927
+ + +L
Sbjct: 155 GCVDIAEIL 163
Score = 137 bits (347), Expect = 1e-36
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G+T + AT H DLV+LL++ +DINI ++ LH A + + I
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAE 161
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LLAAK C+++A + G++ LH AA N + L L + +KN G+T L A
Sbjct: 162 ILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Query: 919 TSLSLVRVL 927
+ + +
Sbjct: 221 SQVWSALQM 229
Score = 134 bits (341), Expect = 1e-35
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G+T + A Y + +V L+L G+D N +D LH+AA G ++ +LL +
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
++ + G++ LH+A CV + ++ ++ N +G++PL A+
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFL---SRDS---DVTLKNKEGETPLQCASLNS 221
Query: 639 YTSIIQLLLDHGAN 652
+ +
Sbjct: 222 QVWSALQMSKALQD 235
Score = 130 bits (331), Expect = 2e-34
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N + + + + LH A GH D+ +L+ A+I+ + Q TPL A +NN+L V+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVK 61
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQ 917
L+ A V+ +D G+T LH AA H + LL +G ++ G T + A +
Sbjct: 62 YLIKAG-ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 918 MTSLSLVRVL 927
+ LV++L
Sbjct: 121 YKHVDLVKLL 130
Score = 117 bits (296), Expect = 8e-30
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 546 ADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVK 605
+ + SPLH AA GH ++ +L+ +GA+I+ + T L A N H VK
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 606 ALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPL 664
LI + ++ + +G + LH AA+ G+ ++Q LL +G + ++ TP+
Sbjct: 62 YLI---KAGA---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Query: 665 QNA---NNLHVAKLL 676
A ++ + KLL
Sbjct: 116 IWATEYKHVDLVKLL 130
Score = 115 bits (292), Expect = 3e-29
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+INI +++ LH A G D+ +L+ + D++ V +PLHIA + N V
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCVV 194
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L L+ +V ++ G T L A++N+ A + K+
Sbjct: 195 LFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 94.8 bits (237), Expect = 6e-22
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
+ + + K+ +PLH A + ++ I +L+ A N++ T L AA NNH
Sbjct: 2 MNFKMEHQNKR-SPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
L+K+GA K+ G TCLH+A + +V+ L
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Score = 67.4 bits (166), Expect = 1e-12
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVA 673
++N + SPLHAAA G+ I +L+ GAN ++ + TPL A N+L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 674 KLL 676
K L
Sbjct: 61 KYL 63
Score = 47.0 bits (113), Expect = 1e-05
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
++ + N +G T L A+ + D
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 35.9 bits (84), Expect = 0.035
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT 548
+ G T L A+L ++ + + D+
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQDS 236
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 157 bits (399), Expect = 6e-43
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T L A + G V+L+L+ GA + SP+H AA RGH + L+ G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+I+ + T L+LA N CVK L+ E ++N DSPLHA R
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKLL---ESGA---DVNQGKG-QDSPLHAVVRTA 233
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA-NNLHVAKLL----NAYVHKPKP 685
+ LL+D GA+ +N P++ +A+L A + KPKP
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASLPKPKP 285
Score = 154 bits (392), Expect = 5e-42
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
++ +H AA++G + ++ G N SPLH A GH + + +LL GA +
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N + +T L A +G CV L+ + ++ ++ SP+H AAR G+
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLL---QHGA---SVQPESD-LASPIHEAARRGHVE 171
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL---NAYVHKPK----PLY 687
+ L+ +G N + TPL A K L A V++ K PL+
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLH 227
Score = 152 bits (386), Expect = 3e-41
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ LH A L G + V ++L+ GA N +PL A G + + LLL G
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
AS+ +++ + +H A GH CV +LI NI+ + +PL+ A
Sbjct: 149 ASVQ-PESDLASPIHEAARRGHVECVNSLI---AYGG---NIDHKISHLGTPLYLACENQ 201
Query: 639 YTSIIQLLLDHGANPTLENKRK--VTPLQNA---NNLHVAKLL 676
+ ++ LL+ GA+ N+ K +PL + +A LL
Sbjct: 202 QRACVKKLLESGADV---NQGKGQDSPLHAVVRTASEELACLL 241
Score = 133 bits (336), Expect = 1e-34
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N +D +T L A G +D V LL+ + A + + +P+H A + ++ V
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVN 174
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
L+A N++ + T L+ A N LL+SGA + + LH +
Sbjct: 175 SLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRT 232
Query: 919 TSLSLVRVL 927
S L +L
Sbjct: 233 ASEELACLL 241
Score = 131 bits (333), Expect = 3e-34
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+NI +D + LH A GH V++L+ + A +N VT TPL AC + + V
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN 142
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL +V + + +H AA H L+ G K + T L++A +
Sbjct: 143 LLLQHG-ASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200
Query: 919 TSLSLVRVL 927
+ V+ L
Sbjct: 201 QQRACVKKL 209
Score = 131 bits (332), Expect = 5e-34
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G G + L + SP+H AA GHQ L L+ G ++
Sbjct: 33 GSKPAGPRDFPG-------IRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N+ + + LH A GH +CVK L+ + +N V +PL A G
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILL---KHGA---QVNGVTADWHTPLFNACVSGSWD 139
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ LLL HGA+ E+ +P+ A ++ L
Sbjct: 140 CVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176
Score = 127 bits (322), Expect = 1e-32
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ SD + +H A GH + V LI Y +I+ TPL++AC+N + V+
Sbjct: 150 SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVK 207
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
LL + +VN ++ LH LA LL+ GA Q KN G+ + +
Sbjct: 208 KLLESG-ADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
Score = 123 bits (312), Expect = 2e-31
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 528 VAALYGRIKVVDLVLELGADTNSQD-----LCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
+ + + ++ G+ S D + G P G LL + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
+ +H A +GH+ ++ LI Q +N + SPLH A G+ S
Sbjct: 56 --AVSDWSPMHEAAIHGHQLSLRNLI---SQGW---AVNIITADHVSPLHEACLGGHLSC 107
Query: 643 IQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++LL HGA TPL NA + LL
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Score = 109 bits (274), Expect = 2e-26
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
NI+ S T L++A V+ L+ AD+N Q +PLH + + +
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVVRTASEELAC 239
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LL+ + A++ G + + L + GA
Sbjct: 240 LLMDFG-ADTQAKNAEGKRPVELVPPESPLA-QLFLEREGA 278
Score = 107 bits (270), Expect = 7e-26
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ + + + G D + + + V +P+H A + + +R
Sbjct: 20 HMASMD-GKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVSDWSPMHEAAIHGHQLSLR 76
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
L++ + VN + LH A + H + +LLK GA+ T L A
Sbjct: 77 NLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135
Query: 919 TSLSLVRVL 927
S V +L
Sbjct: 136 GSWDCVNLL 144
Score = 90.2 bits (225), Expect = 6e-20
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 813 IATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD 872
+ +S H+ L+ + + + + + + + L + +A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMD--GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58
Query: 873 YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ +H AAI+ H L+ G I + LH A LS V++L
Sbjct: 59 --DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Score = 73.7 bits (182), Expect = 2e-14
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ LH ++ L+++ GADT +++ G P+ L L
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE- 276
Query: 578 GASINLT 584
GAS+
Sbjct: 277 GASLPKP 283
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 152 bits (387), Expect = 8e-43
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADT-NSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
+H A G + + L G + N D G +PL +A+ G + LL GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
++ E +AL LA+ G+ V L+ E++V +IN + G +PL A R +
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLL---ERDV---DINIYDWNGGTPLLYAVRGNHV 115
Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
++ LL GA+ T E TP+ A V +++
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 152 bits (386), Expect = 1e-42
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+RGFT L A+ +G I+ V +LE GAD + S L A+T G+ +++ LLL
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
IN+ D G T L A H CV+AL+ + ++ + G +P+ A G
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALL---ARGA---DLTTEADSGYTPMDLAVALG 146
Query: 639 YTSIIQLLLDHGANPTLENKRKVTP 663
Y + Q++ +H N P
Sbjct: 147 YRKVQQVIENHILKLFQSNLVPADP 171
Score = 138 bits (350), Expect = 8e-38
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+N + G+T L A++ G + VR L+ + AD +I+ + ++ + L +A IV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL ++N D+ G T L YA NH LL GA + G T + +A +
Sbjct: 88 LLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 920 SLSLVRVL 927
+ +V+
Sbjct: 147 YRKVQQVI 154
Score = 128 bits (324), Expect = 2e-34
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ +I + +AL +A++ G+ D+V LL+ DINI TPL A + N++ V
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNHVKCVE 119
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT 910
LLA ++ + G T + A + + ++ + N
Sbjct: 120 ALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 119 bits (301), Expect = 3e-31
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRAD-INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
++H + G D ++ + + +N + TPL A + VR LL
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWG- 59
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ + +AL A+ +T++ LLL+ I + G T L A + + V
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 926 VL 927
L
Sbjct: 120 AL 121
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 153 bits (389), Expect = 2e-42
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 7/151 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLHS 577
+ LH AA G + + L+ N D G + L++A GH++++ +L
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+N + G+TALH A G+ V+ L+ + + N + A
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL---AKGA---RTDLRNIEKKLAFDMATNA 183
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
S+++ A TL N ++++
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
Score = 152 bits (387), Expect = 3e-42
Identities = 49/164 (29%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D T GR ++ Q +PLH AA RG+ + L L +
Sbjct: 42 TDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N D G+TAL+ A + GH+ V+ L N+ +N N GD+ LHAAA G
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLF-----TQPNIELNQQNKLGDTALHAAAWKG 151
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
Y I+QLLL GA L N K A + K
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195
Score = 147 bits (373), Expect = 2e-40
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
+ LH A G+ +R ++ R +N + + T L+ AC +
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKD 120
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
IV +L +N Q+ G+TALH AA + ++ LLL GAR ++N + MA
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA 180
Query: 916 QQMTSLSLVRVL 927
SL++
Sbjct: 181 TNAACASLLKKK 192
Score = 126 bits (319), Expect = 4e-33
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 15/162 (9%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G + A + D + D + ++G L
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPS 63
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+ + LH A G+ + ++ + + V +N ++ G + L+ A G
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECL---DNRV---GVNGLDKAGSTALYWACHGG 117
Query: 639 YTSIIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ I+++L +NK T L A + +LL
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
Score = 125 bits (316), Expect = 9e-33
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 3/124 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLI-NYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+N + G TAL+ A GH D+V +L ++N ++ T LH A IV
Sbjct: 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYADIV 156
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LLLA + ++ A A +L + A + N +
Sbjct: 157 QLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Query: 918 MTSL 921
Sbjct: 216 EHHH 219
Score = 118 bits (299), Expect = 2e-30
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+I T TS G L+ +I PLH A + NLS +R
Sbjct: 37 DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI------DNPLHEAAKRGNLSWLR 90
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMAQQ 917
L + VN D G+TAL++A H ++ +L + +N G T LH A
Sbjct: 91 ECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149
Query: 918 MTSLSLVRVL 927
+V++L
Sbjct: 150 KGYADIVQLL 159
Score = 117 bits (296), Expect = 6e-30
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D G T L+ A G +V+ L + + N Q+ G + LH AA +G+ +++ LLL
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA +L + E A +ATN + +K + N + +
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQ---GTDA---VRTLSNAEDYLDDEDSDLE 216
Query: 638 G 638
Sbjct: 217 H 217
Score = 109 bits (275), Expect = 3e-27
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 14/131 (10%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
G + A L I + +T T+ G + +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS-- 63
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
+ D+PLH AA+ G S ++ LD+ +K T L A
Sbjct: 64 ---------NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC 114
Query: 668 --NNLHVAKLL 676
+ + ++L
Sbjct: 115 HGGHKDIVEML 125
Score = 105 bits (265), Expect = 7e-26
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 7/122 (5%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
G + A L DI +T T ++
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLIPSN----- 64
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
V Q + LH AA + + L + + G T L+ A +V
Sbjct: 65 -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 926 VL 927
+L
Sbjct: 124 ML 125
Score = 98.1 bits (245), Expect = 3e-23
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T LH AA G +V L+L GA T+ +++ A ++L +
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Query: 579 ASINLTDNEGNTALHLATNNGH 600
A L++ E + H
Sbjct: 197 AVRTLSNAEDYLDDEDSDLEHH 218
Score = 88.1 bits (219), Expect = 9e-20
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N N G TALH A G+ D+V+LL+ A ++ K+ +A S+++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACASLLK 190
Query: 859 LLLAAKQCNVNAQDYRG---------NTALHY 881
+ H+
Sbjct: 191 KKQGTD-AVRTLSNAEDYLDDEDSDLEHHHHH 221
Score = 53.8 bits (130), Expect = 4e-08
Identities = 5/56 (8%), Positives = 7/56 (12%)
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLV 924
G + A L T L+
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 154 bits (392), Expect = 2e-42
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
++ +H AA++G + ++ G N SPLH A GH + + +LL GA +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N + +T L A +G CV L+ ++ ++ SP+H AAR G+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQH------GASVQPESD-LASPIHEAARRGHVE 115
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL---NAYVHKPK----PLY 687
+ L+ +G N + TPL A K L A V++ K PL+
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLH 171
Score = 154 bits (391), Expect = 4e-42
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T L A + G V+L+L+ GA + SP+H AA RGH + L+ G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 124
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+I+ + T L+LA N CVK L+ E ++N DSPLHA AR
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLL---ESGA---DVNQGKG-QDSPLHAVARTA 177
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA-NNLHVAKLL 676
+ LL+D GA+ +N P++ +A+L
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF 216
Score = 152 bits (386), Expect = 1e-41
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ LH A L G + V ++L+ GA N +PL A G + + LLL G
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
AS+ +++ + +H A GH CV +LI NI+ + +PL+ A
Sbjct: 93 ASVQ-PESDLASPIHEAARRGHVECVNSLI---AYGG---NIDHKISHLGTPLYLACENQ 145
Query: 639 YTSIIQLLLDHGANPTLENKRK--VTPLQNA---NNLHVAKLL 676
+ ++ LL+ GA+ N+ K +PL + +A LL
Sbjct: 146 QRACVKKLLESGADV---NQGKGQDSPLHAVARTASEELACLL 185
Score = 149 bits (379), Expect = 1e-40
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ + +H AA G ++ V+ ++ G + + + +PL+ A + + LL SG
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N ++ LH E L+ F + A N +G P+
Sbjct: 158 ADVN-QGKGQDSPLHAVARTASEELACLLMDFGA------DTQAKNAEGKRPVELVPP-- 208
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + QL L+ P+L ++ + + + KL+
Sbjct: 209 ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249
Score = 139 bits (354), Expect = 3e-37
Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T L++A + V +LE GAD N Q SPLH A + + LL+ G
Sbjct: 131 ISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFG 189
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A + EG + L + + E+E + +
Sbjct: 190 ADTQAKNAEGKRPVELVPPESP--LAQLFL---EREG---PPSLMQLCRLRIRKCFGIQQ 241
Query: 639 YTSIIQLLLDHGANPTL 655
+ I +L+L L
Sbjct: 242 HHKITKLVLPEDLKQFL 258
Score = 131 bits (332), Expect = 3e-34
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+NI +D + LH A GH V++L+ + A +N VT TPL AC + + V
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN 86
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL +V + + +H AA H L+ G K + T L++A +
Sbjct: 87 LLLQHG-ASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 919 TSLSLVRVL 927
+ V+ L
Sbjct: 145 QQRACVKKL 153
Score = 129 bits (328), Expect = 9e-34
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
NI+ S T L++A V+ L+ AD+N Q +PLH + + +
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVARTASEELAC 183
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL+ + A++ G + + LA L L+ P +
Sbjct: 184 LLMDFG-ADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQ 240
Query: 919 TSLSLVRVL 927
+ +++
Sbjct: 241 QHHKITKLV 249
Score = 128 bits (325), Expect = 2e-33
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
++ +H A GH +R LI+ +NI+T ++PLH AC +LS V++LL
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKHG- 59
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
VN +T L A ++ + LLL+ GA Q ++ + +H A + + V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVN 118
Query: 926 VL 927
L
Sbjct: 119 SL 120
Score = 126 bits (320), Expect = 9e-33
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ SD + +H A GH + V LI Y +I+ TPL++AC+N + V+
Sbjct: 94 SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVK 151
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL + +VN ++ LH A LA LL+ GA Q KN G+ + +
Sbjct: 152 KLLESG-ADVNQGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209
Query: 919 TSLSLVRVL-THEAP 932
+ L ++ E P
Sbjct: 210 S--PLAQLFLEREGP 222
Score = 104 bits (263), Expect = 4e-25
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + LH +L LL+++ AD + P+ + + + +
Sbjct: 159 DVNQGK-GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK-RPVELVPPESP--LAQ 214
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L L + + I H + L+L
Sbjct: 215 LFLERE-GPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 32.0 bits (74), Expect = 0.69
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGA 546
M + + K+ LVL
Sbjct: 226 MQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 152 bits (388), Expect = 4e-42
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
+DD + A YG + ++E G D D + LH+AA +++ +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 577 SGASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
GA ++ + +T LH AT GH + V L+ + + + ++ +G S +H AA
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM---KYGA---DPSLIDGEGCSCIHLAA 117
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL----QNANNLHVAKLL 676
++G+TSI+ L+ G + + ++ +TPL +++ +LL
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Score = 150 bits (382), Expect = 3e-41
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D T LH A G + +V +++ GAD + D GCS +H AA GH +++ L+ G
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 579 ASINLTDNEGNTALHLATNNGHET-CVKALIYFNEQEVLNLNINAVNNQ-GDSPLHAAAR 636
+++ D G T L A H + L+ N+++N + ++ LH A
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL------TFNVSVNLGDKYHKNTALHWAVL 186
Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G T++I LLL+ GAN +N + + L A N+ + L
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 138 bits (350), Expect = 5e-37
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ-NVLLLLLHS 577
D G + +H+AA +G +V ++ G D + D G +PL +AA R H + LLL
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 578 GASINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
S+NL D NTALH A G+ T + L+ E N++A N +G+S L A +
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLL---EAGA---NVDAQNIKGESALDLAKQ 219
Query: 637 WGYTSIIQLLLDHGANPTLEN 657
+I L + +N
Sbjct: 220 RKNVWMINHLQEARQAKGYDN 240
Score = 135 bits (342), Expect = 7e-36
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ + + AT G Y+ R L+ D+ + + +T LH A NN + +V+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVK 59
Query: 859 LLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
++ K V+ +T LH+A H ++ L+K GA P + + G +C+H+A Q
Sbjct: 60 YYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 918 MTSLSLVRVL 927
S+V L
Sbjct: 119 FGHTSIVAYL 128
Score = 133 bits (338), Expect = 2e-35
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ + + T LH A DLV+ I+ A ++ + TPLH A + +LS+V
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
L+ + + D G + +H AA HT++ L+ G + + G T L A
Sbjct: 94 QLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Score = 131 bits (331), Expect = 2e-34
Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIV 857
+ ++ + +G + +H+A GH +V LI D++++ + +TPL A + +
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPT 159
Query: 858 RLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
RLLL +VN D Y NTALH+A + +T + +LLL++GA +N G++ L +A+
Sbjct: 160 RLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 917 QMTSLSLVRVL 927
Q ++ ++ L
Sbjct: 219 QRKNVWMINHL 229
Score = 121 bits (305), Expect = 6e-31
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 799 NINICNSDGYTALHIATSLGHY-DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
++++ + +G T L A H D RLL+ + +N+ + + T LH A N +++
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
LLL A NV+AQ+ +G +AL A + + L ++ N
Sbjct: 194 SLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 120 bits (303), Expect = 1e-30
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
D + A G L+ +G + D E T LH A N VK I
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 609 YFNEQEVLNLNINAV-NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ ++ + + +PLH A R G+ S++ L+ +GA+P+L + + + A
Sbjct: 63 ---SKGA---IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 668 ---NNLHVAKLL 676
+ + L
Sbjct: 117 AQFGHTSIVAYL 128
Score = 89.0 bits (222), Expect = 6e-20
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
+ D+ + AT G + L+ E ++ + + + LH AA
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELV---EAGY---DVRQPDKENVTLLHWAAINNRI 55
Query: 641 SIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
+++ + GA L TPL A +L + L
Sbjct: 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Score = 65.9 bits (162), Expect = 5e-12
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
++ +++ + A ++G + L++ G + +K VT L A N + + K
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 676 L 676
Sbjct: 61 Y 61
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 152 bits (388), Expect = 5e-42
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D+ G T LH+A + G + V ++ L G + + + +PLH A +V+ LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA 634
+ +GAS D G TA HLA + TC++AL+ L++ A N G + LH A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVA 123
Query: 635 ARWGYTSIIQLLLDHGANPTLEN-KRKVTPLQNA---NNLHVAKLL 676
+QLLL+ GA+ + K +PL +A N+L + +LL
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 142 bits (362), Expect = 1e-38
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
L++ N DG TALH+A + + V+LL+ ADI+ V +PL A +NN+LS+V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LLL NVNAQ Y G++ALH A+ L L++SGA +KN + T L +A+
Sbjct: 167 QLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Query: 918 MTSLSLVRVL 927
+ ++R
Sbjct: 226 RRVIDILRGK 235
Score = 142 bits (362), Expect = 2e-38
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA----DTNSQDLCGCSPLHYAATRGHQNVLLLL 574
D G T H+A + + +L+ A D +++ G + LH A Q + LL
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 575 LHSGASINLTD-NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
L GA I+ D G + L A N + V+ L+ + N+NA G S LH+
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL---QHGA---NVNAQMYSGSSALHS 189
Query: 634 AARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
A+ G +++ L+ GA+ +L+N TPL A + + +
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235
Score = 139 bits (353), Expect = 2e-37
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAATRGHQNVLLLLLHS 577
+ G T LHVA + V L+LE GAD ++ D+ G SPL +A +++ LLL
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA++N G++ALH A+ G V+ L+ + + N D+PL A
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLV---RSGA---DSSLKNCHNDTPLMVARSR 226
Query: 638 GYTSIIQLLLDHGAN 652
I++ A+
Sbjct: 227 RVIDILRGKATRPAS 241
Score = 136 bits (346), Expect = 2e-36
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++I N+ T LH+A +VRLL+ A + R Q T H+AC++ + + +R
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLR 96
Query: 859 LLL---AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHM 914
LL A ++ A++Y G TALH A LLL+ GA + G++ L
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156
Query: 915 AQQMTSLSLVRVL 927
A + SLS+V++L
Sbjct: 157 AVENNSLSMVQLL 169
Score = 124 bits (314), Expect = 4e-32
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYR----ADINIVTRVKQLTPLHIACQNNNLS 855
+ DG T LHIA G+ V L+N +++I + TPLH+A S
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPS 60
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ----IKNHYGQTC 911
+VRLL+ A + A D G TA H A + LL S A +N+ G T
Sbjct: 61 VVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 912 LHMAQQMTSLSLVRVL 927
LH+A V++L
Sbjct: 120 LHVAVNTECQETVQLL 135
Score = 114 bits (288), Expect = 1e-28
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 799 NINICNS-DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+I+ + G + L A +V+LL+ + A++N + LH A L +V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLV 199
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
R L+ + + ++ +T L A ++ A
Sbjct: 200 RTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 109 bits (275), Expect = 5e-27
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLL----HSGASINLTDNEGNTALHLATNNGHETCV 604
D G +PLH A +G+ + L+ G +++ +N T LHLA + V
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL----ENKRK 660
+ L+ + A++ G + H A + ++ LLD A TL N
Sbjct: 63 RLLV---TAGA---SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 661 VTPLQNA---NNLHVAKLL 676
+T L A +LL
Sbjct: 117 LTALHVAVNTECQETVQLL 135
Score = 91.0 bits (227), Expect = 1e-20
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL---NINAVNNQGDSPLHAAARW 637
D +G+T LH+A G+ V L+ + ++ NN +PLH A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLV-----NLFQQGGRELDIYNNLRQTPLHLAVIT 56
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
S+++LL+ GA+P ++ T A + + L
Sbjct: 57 TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 151 bits (383), Expect = 6e-42
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLHS 577
D G T L++A I++ +++ GAD N Q+ SP YA +G +L +L H+
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+N + G AL A GH VK L+ E +I+ N+ G + L A
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLL-----EDGREDIDFQNDFGYTALIEAVGL 150
Query: 638 -----GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
Y I++LL+++GA+ ++++ T + A ++K+L
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 141 bits (357), Expect = 2e-38
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 14/167 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+L A KV +++ + + D G +PL+ A + L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A INL ++ ++ A G + ++ + ++N N G + L AA G
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYML-----KHATPDLNKHNRYGGNALIPAAEKG 117
Query: 639 YTSIIQLLLDHG-ANPTLENKRKVTPLQNA--------NNLHVAKLL 676
+ ++LLL+ G + +N T L A + KLL
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Score = 129 bits (328), Expect = 2e-34
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ +++G T L+IA ++ + LI+ ADIN+ +P A I+
Sbjct: 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQGRTEILA 89
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG-ARPQIKNHYGQTCLHMA 915
+L ++N + G AL AA H + LLL+ G +N +G T L A
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147
Score = 122 bits (308), Expect = 7e-32
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA-DINIVTRVKQLTPLHIACQNNNLSIV 857
+IN+ NS + A + G +++ ++ + D+N R L A + ++ V
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNV 122
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAI-----NNHTNLATLLLKSGARPQIKNHYGQTCL 912
+LLL + +++ Q+ G TAL A + ++ LL+++GA IK++ G+T +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182
Query: 913 HMAQQMTSLSLVRVL 927
A Q + ++L
Sbjct: 183 DYANQKGYTEISKIL 197
Score = 120 bits (304), Expect = 2e-31
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ L A + +L + ++ V TPL+IA NN++ I + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDR 61
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQMTSLS 922
++N Q+ ++ YA T + +LK N YG L A + +
Sbjct: 62 G-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 923 LVRVL 927
V++L
Sbjct: 121 NVKLL 125
Score = 117 bits (297), Expect = 2e-30
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
+ + L A R + V +L + ++ D EGNT L++A +N KALI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-- 59
Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPLQNA-- 667
++ +IN N+ DSP A G T I+ +L H + N+ L A
Sbjct: 60 -DRGA---DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115
Query: 668 -NNLHVAKLL 676
++ KLL
Sbjct: 116 KGHIDNVKLL 125
Score = 116 bits (294), Expect = 7e-30
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVL-LLLLH 576
+ + A GR +++ +L+ D N + G + L AA +GH + + LLL
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 577 SGASINLTDNEGNTALHLA-----TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
I+ ++ G TAL A N ++ VK L+ E + + +N G + +
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM---ENGA---DQSIKDNSGRTAM 182
Query: 632 HAAARWGYTSIIQLLLDH 649
A + GYT I ++L +
Sbjct: 183 DYANQKGYTEISKILAQY 200
Score = 101 bits (255), Expect = 9e-25
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIAC-----QNN 852
++N N G AL A GH D V+LL+ R DI+ T L A
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGNQL 156
Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
IV+LL+ + + +D G TA+ YA +T ++ +L +
Sbjct: 157 YQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 57.8 bits (141), Expect = 1e-09
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ Y L A + + +L + + + G T L++A + + + L
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58
Score = 45.1 bits (108), Expect = 3e-05
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
+ +I ++ G TA+ A G+ ++ ++L Y
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 151 bits (385), Expect = 9e-42
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 8/166 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
+ G + LH+A ++ + V+ A N Q+ +PLH A + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA 634
L +G L D GNT LHLA G V L L+ + A N G + LH A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 635 ARWGYTSIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
+ GY I++LL+ GA+ E T L A N + LL
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Score = 135 bits (342), Expect = 5e-36
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N N+ T LH+A ++ L+ D + TPLH+AC+ L+ V
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVG 95
Query: 859 LLL-----AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK-NHYGQTCL 912
+L + A +Y G+T LH A+I+ + + LL+ GA + G+T L
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 913 HMAQQMTSLSLVRVL 927
H+A + + LV +L
Sbjct: 156 HLAVDLQNPDLVSLL 170
Score = 133 bits (336), Expect = 4e-35
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N +G+T LH+A+ G+ +V LL++ AD+N T LH+A N +V
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
LLL +VN Y+G + T + L + +
Sbjct: 169 LLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
Score = 130 bits (329), Expect = 3e-34
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 804 NSDGYTALHIATSLGH----YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
DG + LH+A +++R + A +N ++Q TPLH+A N I
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEA 63
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI------KNHYGQTCLH 913
LL A C+ +D+RGNT LH A +L +S P + N+ G TCLH
Sbjct: 64 LLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 914 MAQQMTSLSLVRVL 927
+A L +V +L
Sbjct: 123 LASIHGYLGIVELL 136
Score = 129 bits (327), Expect = 6e-34
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-----LTPLHIACQNNN 853
+ + + G T LH+A G V +L ++ + +K T LH+A +
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129
Query: 854 LSIVRLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
L IV LL++ +VNAQ+ G TALH A + +L +LLLK GA + G +
Sbjct: 130 LGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 188
Query: 913 HMAQQMTSLSLVRVL 927
+ S + + L
Sbjct: 189 QLTWGRPSTRIQQQL 203
Score = 128 bits (325), Expect = 9e-34
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 13/156 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT------NSQDLCGCSPLHYAATRGHQNVLL 572
D RG T LH+A G + V ++ + + + G + LH A+ G+ ++
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 573 LLLHSGASINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
LL+ GA +N + G TALHLA + + V L+ + ++N V QG SP
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL---KCGA---DVNRVTYQGYSPY 188
Query: 632 HAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
T I Q L
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
Score = 110 bits (278), Expect = 2e-27
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHS 577
+ G T LH+A+++G + +V+L++ LGAD N+Q+ G + LH A + +++ LLL
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA +N +G + L + L L L + + +
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ------LTLENLQMLPESEDEESYDTES 227
Query: 638 GYTSI 642
+T
Sbjct: 228 EFTEF 232
Score = 91.8 bits (229), Expect = 6e-21
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 799 NINIC-NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
++N +G TALH+A L + DLV LL+ AD+N VT +P + + I
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQ 200
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
+ L Y + T
Sbjct: 201 QQLGQLT-LENLQMLPESEDEESYDTESEFTEFT 233
Score = 89.5 bits (223), Expect = 3e-20
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 843 TPLHIACQNNN----LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
+ LH+A + + ++R + +N Q+ T LH A I N +A LL +G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 899 ARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928
P++++ G T LH+A + L+ V VLT
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Score = 61.8 bits (151), Expect = 1e-10
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 870 AQDYRGNTALHYAAINNHTNLAT----LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
G++ LH A I+ L + A +N+ QT LH+A +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 926 VL 927
L
Sbjct: 63 AL 64
Score = 52.2 bits (126), Expect = 2e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 622 AVNNQGDSPLHAAARWGYTS----IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAK 674
+ GDS LH A + +I+ + A +N + TPL A N +A+
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 675 LL 676
L
Sbjct: 63 AL 64
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 150 bits (381), Expect = 3e-41
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA Y R +LE AD N QD G +PLH A + Q V +L+ +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A+ ++ ++G T L LA E ++ LI + ++NAV++ G S LH AA
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLI------NSHADVNAVDDLGKSALHWAAAV 135
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+LL +GAN ++N R+ TPL A + AK+L
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Score = 147 bits (375), Expect = 2e-40
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D+ G T LH A V +++ A D +++ G +PL AA + +L L++S
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A +N D+ G +ALH A + L+ + N + NN+ ++PL AAR
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLL---KNGA---NKDMQNNREETPLFLAARE 168
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G ++LLDH AN + + P A + + +LL
Sbjct: 169 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 135 bits (342), Expect = 4e-36
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ DG T L +A L ++ LIN AD+N V + + + LH A NN+
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAV 142
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL N + Q+ R T L AA A +LL A I +H + +AQ+
Sbjct: 143 VLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 919 TSLSLVRVL 927
+VR+L
Sbjct: 202 MHHDIVRLL 210
Score = 134 bits (340), Expect = 8e-36
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G T L +AA +++ ++ AD N+ D G S LH+AA + + ++LL +G
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ ++ +N T L LA G K L+ + N + ++ P A
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKVLL---DHFA---NRDITDHMDRLPRDIAQERM 202
Query: 639 YTSIIQLLLDHGAN 652
+ I++LL ++
Sbjct: 203 HHDIVRLLDEYNLV 216
Score = 132 bits (334), Expect = 4e-35
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD NI + + TPLH A + + ++L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 77
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ + +++A+ + G T L AA + L+ S A + G++ LH A + +
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 921 LSLVRVL 927
+ VL
Sbjct: 138 VDAAVVL 144
Score = 127 bits (323), Expect = 2e-33
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 537 VVDLVLELGAD-TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
V+ + GA N D G + LH AA + LL + A N+ DN G T LH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 596 TNNGHETCVKALIYFNEQEVLN--LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
+ + + LI N +++A + G +PL AAR +++ L++ A+
Sbjct: 66 VSADAQGVFQILI-------RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 654 TLENKRKVTPLQNA---NNLHVAKLL 676
+ + L A NN+ A +L
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVL 144
Score = 119 bits (300), Expect = 2e-30
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G +ALH A ++ + D +L+ A+ ++ ++ TPL +A + + +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGSYETAK 175
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
+LL N + D+ A H ++ LL + + H
Sbjct: 176 VLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 102 bits (257), Expect = 9e-25
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877
++ I A ++ T T LH+A + + + LL A + N QD G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRT 60
Query: 878 ALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LH A + + +L+++ A + H G T L +A ++ ++ L
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
Score = 35.1 bits (82), Expect = 0.068
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 638 GYTSIIQLLLDHGANPTLE-NKRKVTPLQNA---NNLHVAKLL 676
++I + GA+ + ++ T L A + AK L
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL 44
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 147 bits (375), Expect = 7e-41
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D T L VA + G +D ++E +D+ G + L +A + LL
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
G+++N D G T L + G+ L+ N+N N +G++PL A+++
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL------EHGANVNDRNLEGETPLIVASKY 144
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G + I++ LL+ GA+ + + +T +A V K+
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 133 bits (337), Expect = 1e-35
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
MD G V + + +D + N +D +PL A G +N + L+
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVE 56
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
+ + D EG+TAL A N + L+ + N+N + G +PL +
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL---SKGS---NVNTKDFSGKTPLMWSII 110
Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+GY+ + LL+HGAN N TPL A + K L
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Score = 127 bits (322), Expect = 1e-33
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + +G TAL A + L++ +++N + TPL + +
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSEMSY 118
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL NVN ++ G T L A+ + + LL+ GA ++ G T A+
Sbjct: 119 FLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF 177
Query: 919 TSLSLVRVL 927
++++
Sbjct: 178 GRQEVIKIF 186
Score = 126 bits (319), Expect = 2e-33
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
N +S T L +A LG + + L+ + T L A +NN L I
Sbjct: 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIA 84
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
LL+ NVN +D+ G T L ++ I ++ ++ LL+ GA +N G+T L +A +
Sbjct: 85 EKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143
Query: 918 MTSLSLVRVL 927
+V+ L
Sbjct: 144 YGRSEIVKKL 153
Score = 125 bits (317), Expect = 4e-33
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T L A R+ + + +L G++ N++D G +PL ++ G+ + LL G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A++N + EG T L +A+ G VK L+ E +I+A + G + +A +G
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLL---ELGA---DISARDLTGLTAEASARIFG 178
Query: 639 YTSIIQLLLDHGA 651
+I++ +
Sbjct: 179 RQEVIKIFTEVRR 191
Score = 109 bits (275), Expect = 2e-27
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
+ + +G I + L NYR N TPL +AC + + L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNR-------TPLMVACMLGMENAIDKL 54
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ + +D G+TAL +A NN +A LL G+ K+ G+T L +
Sbjct: 55 VENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113
Query: 921 LSLVRVL 927
+ L
Sbjct: 114 SEMSYFL 120
Score = 108 bits (273), Expect = 3e-27
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N + G T L + G+ ++ L+ + A++N + TPL +A + IV+
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEIVK 151
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
LL +++A+D G TA A I + +
Sbjct: 152 KLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 97.5 bits (244), Expect = 2e-23
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
+ D G + L L N D+ T L +A G E + L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
E + + +G + L A + I + LL G+N ++ TPL +
Sbjct: 56 ---ENFD---KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109
Query: 668 --NNLHVAKLL 676
++ L
Sbjct: 110 IFGYSEMSYFL 120
Score = 73.2 bits (181), Expect = 6e-15
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N N +G T L +A+ G ++V+ L+ ADI+ T A +++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIK 184
Query: 859 LLLAAK 864
+ +
Sbjct: 185 IFTEVR 190
Score = 44.3 bits (106), Expect = 4e-05
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
+I+ + G TA A G +++++ R
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 146 bits (372), Expect = 7e-41
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
L AA GR V +++ GAD N++D G +PLH AA GH ++ +LL +GA +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D+ G T L LA GH V+ L+ + ++NA + +G +PLH AA +G+
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLL---KNGA---DVNANDMEGHTPLHLAAMFGHLE 127
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
I+++LL +GA+ ++K T + N +A++L
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 131 bits (333), Expect = 1e-35
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N ++ G+T LH+A GH ++V +L+ AD+N V TPL +A +L IV
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVE 97
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL +VNA D G+T LH AA+ H + +LLK+GA ++ +G+T ++
Sbjct: 98 VLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 919 TSLSLVRVL 927
+ L +L
Sbjct: 157 GNEDLAEIL 165
Score = 126 bits (320), Expect = 1e-33
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH+AA G +++V+++L+ GAD N+ D G +PL AA GH ++ +LL +G
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D EG+T LHLA GH V+ L+ + ++NA + G + + G
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLL---KNGA---DVNAQDKFGKTAFDISIDNG 157
Query: 639 YTSIIQLLLDH 649
+ ++L
Sbjct: 158 NEDLAEILQKL 168
Score = 125 bits (318), Expect = 1e-33
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 799 NINICN-SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ + + SD L A G D VR+L+ AD+N TPLH+A N +L IV
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIV 63
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LL +VNA D+ G T L AA+ H + +LLK+GA + G T LH+A
Sbjct: 64 EVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 918 MTSLSLVRVL 927
L +V VL
Sbjct: 123 FGHLEIVEVL 132
Score = 117 bits (297), Expect = 1e-30
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 545 GADTN-SQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC 603
G+ + L AA G + + +L+ +GA +N D G T LHLA NGH
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
V+ L+ + ++NAV++ G +PL AA +G+ I+++LL +GA+ + TP
Sbjct: 63 VEVLL---KNGA---DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 664 LQNA---NNLHVAKLL 676
L A +L + ++L
Sbjct: 117 LHLAAMFGHLEIVEVL 132
Score = 112 bits (282), Expect = 1e-28
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T L +A GH ++V +L+ AD+N TPLH+A +L IV
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVE 130
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 131 VLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 92.8 bits (232), Expect = 5e-22
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
+ + L A + VR+L+A +VNA+D G T LH AA N H +
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+LLK+GA +H G T L +A L +V VL
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 146 bits (371), Expect = 9e-41
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
M + L AA G ++ + +L+ + N+Q+ G + L G+ + LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA+ +L D G +H A G ++ L+ E + ++N +N+G+ PLH AA+
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLL---EFQA---DVNIEDNEGNLPLHLAAKE 113
Query: 638 GYTSIIQLLLDHGA-NPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ +++ L+ H A N N + T A V L+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 132 bits (335), Expect = 7e-36
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T L V G ++ +L GA+ + +D G + +H AA G + L LL
Sbjct: 35 NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N+ DNEGN LHLA GH V+ L+ + N+ N++GD+ A +G
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-----KHTASNVGHRNHKGDTACDLARLYG 148
Query: 639 YTSIIQLLLDHGA 651
++ L+ +GA
Sbjct: 149 RNEVVSLMQANGA 161
Score = 127 bits (322), Expect = 4e-34
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N N G TAL + LG+ ++ R L+ A+ ++ R +H A + L ++
Sbjct: 30 NVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGF-AVIHDAARAGFLDTLQ 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQ 917
LL Q +VN +D GN LH AA H + L+K A +NH G T +A+
Sbjct: 88 TLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146
Query: 918 MTSLSLVRVL 927
+V ++
Sbjct: 147 YGRNEVVSLM 156
Score = 120 bits (305), Expect = 7e-32
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N ++ + G+ +H A G D ++ L+ ++AD+NI PLH+A + +L +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ NV ++++G+TA A + + +L+ +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 117 bits (296), Expect = 1e-30
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
L A + G + + L+ ++N + T L + + N I R LL
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRG- 60
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N + +D G +H AA + LL+ A I+++ G LH+A + L +V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 926 VL 927
L
Sbjct: 121 FL 122
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 147 bits (375), Expect = 2e-40
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 522 GFTVLHVAALYGRIK-VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
LH A + V +L+ + +D G PLH++ + + LL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 581 INL---TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+NL D+ G T H+A + G+ VK+L L ++N + NQG + LH A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHLAVGK 117
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + Q L+++GA+ +++K PL A +L + +LL
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 144 bits (366), Expect = 3e-39
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE--LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
DD G+T H+A G ++VV + + L D N G + LH A + V L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
+GAS+ + D LH A + G ++ L + +N + QG +PL A
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLC-----GLGKSAVNWQDKQGWTPLFHALA 183
Query: 637 WGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLL 676
G+ LL++ +GA L + + A N V K
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
Score = 139 bits (352), Expect = 2e-37
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 15/167 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC---GCSPLHYAATRGHQNV--LLL 573
D G LH + + ++ +L + N D G +P H A + G+ V L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
+N N+G T LHLA + LI E ++ + PLH
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI---ENGA---SVRIKDKFNQIPLHR 146
Query: 634 AARWGYTSIIQLLLDHGANPT-LENKRKVTPLQNA---NNLHVAKLL 676
AA G +I+LL G + ++K+ TPL +A + A LL
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 137 bits (348), Expect = 7e-37
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ--LTPLHIACQNNNLSI 856
+ + DG LH + S +++ L++ ++N+ TP HIAC NL +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 857 VRLLLA-AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
V+ L + ++N +G T LH A ++ L+++GA +IK+ + Q LH A
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 916 QQMTSLSLVRVL 927
+ SL L+ +L
Sbjct: 148 ASVGSLKLIELL 159
Score = 134 bits (339), Expect = 1e-35
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T LH+A +++ + LI A + I + Q PLH A +L ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIE 157
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMA 915
LL + VN QD +G T L +A H + A LL+ K GA + ++ G +A
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 119 bits (301), Expect = 2e-30
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 799 NINICNS---DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNNL 854
N+N+ + G+T HIA S+G+ ++V+ L + ++ Q +T LH+A
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG-ARPQIKNHYGQTCLH 913
+ + L+ +V +D LH AA L LL G + ++ G T L
Sbjct: 121 EVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 914 MAQQMTSLSLVRVL 927
A +L
Sbjct: 180 HALAEGHGDAAVLL 193
Score = 109 bits (276), Expect = 3e-27
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 807 GYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
LH A + V+ LL + + + + + PLH + I LL +K
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLL-SKM 59
Query: 866 CNVNAQDYR---GNTALHYAAINNHTNLATLLLKSGARPQI--KNHYGQTCLHMAQQMTS 920
NVN DY G T H A + + L +P + + G TCLH+A
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 921 LSLVRVL 927
+ + L
Sbjct: 120 FEVSQFL 126
Score = 101 bits (254), Expect = 2e-24
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIACQNNNLSIV 857
++ I + LH A S+G L+ LL ++ +N + TPL A +
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAA 190
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
LL+ + D +G A A
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223
Score = 52.4 bits (127), Expect = 1e-07
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLH 576
D +G+T L A G LV + GA+ + D G A ++ V L +
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 151 bits (384), Expect = 3e-40
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 22/178 (12%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD +HVAA G+ V ++E G Q+ GC+ LH A G + L G
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI---------------YFNEQEVLNLNINAV 623
+ G +HLA V AL+ +E+EV + +
Sbjct: 77 EVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134
Query: 624 NNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ +G + LH G Y +I++L+ GA+PT ++K TPL A N L+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192
Score = 148 bits (376), Expect = 4e-39
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL-----GADTNSQDLCGCSPLHYAATRGHQNVLLL 573
D T L A + + +DL+++ + + G S LH+A ++V +
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229
Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLN---INAVNNQ 626
+ G +N+ DNE L+L+ K L+ F Q N +
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289
Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ AAA ++QLL + V ++
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342
Score = 142 bits (360), Expect = 4e-37
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG--HQNVLLLLLH 576
+RG + +V ++ + G + LH+ G + ++ +L+
Sbjct: 108 KERGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
GAS D T L A + + ++ +L ++ N QG+S LH A
Sbjct: 162 LGASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAIL 220
Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + ++ G + +E+ PL + + + K L
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263
Score = 138 bits (350), Expect = 1e-35
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 25/169 (14%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL--- 575
+ +G + LH A L V +E+G D N +D PL+ + + LL
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267
Query: 576 ----------HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
H+G ++ + A + + ++ L E+ + N
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ---EKLD---EVVRSLN 321
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674
G + ++ ++ L A ++ + V+K
Sbjct: 322 TGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARS------SAVSK 364
Score = 136 bits (345), Expect = 4e-35
Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 798 LNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
+ ++ + G TALH LG + +++++L+ A + TPL A + N
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNRE 187
Query: 856 IVRLLLAAKQC----NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC 911
+ L++ ++ + +GN+ LH+A + N ++A ++ G ++++
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247
Query: 912 LHMAQQMTSLSLVRVL 927
L+++ + + L + L
Sbjct: 248 LYLSVRAAMVLLTKEL 263
Score = 127 bits (321), Expect = 7e-32
Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 13/141 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ N G + LH A + D+ + D+N+ + PL+++ + + + +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLLTK 261
Query: 859 LLLAAKQ------------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
LL V + AA + + LL + +
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 321
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
G ++ + ++ R+
Sbjct: 322 TGAGGAVKRKKKAAPAVKRMK 342
Score = 126 bits (319), Expect = 1e-31
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 13/130 (10%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINI------------VTRVKQLTPLH 846
++N+ +++ L+++ L + L+ I RV L +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
A + +++LL K V G + + L A + ++
Sbjct: 296 AAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354
Query: 907 YGQTCLHMAQ 916
+++
Sbjct: 355 SRARSSAVSK 364
Score = 123 bits (310), Expect = 2e-30
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 10/133 (7%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
LN + + +H+A G D VR LI I R T LH+AC+ +
Sbjct: 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTA 69
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+ L + + G +H A + N T+L L++ GQ + +
Sbjct: 70 KYLA-SVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNE 120
Query: 918 MTSLSLVRVLTHE 930
+ + +H
Sbjct: 121 CDEREVNEIGSHV 133
Score = 109 bits (276), Expect = 4e-26
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 540 LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG 599
+ + D +H AA +G + + L+ +G S + + G TALHLA G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 600 HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR 659
K L E + + G P+H A T ++ L++ R
Sbjct: 65 CVDTAKYLASVGE------VHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------R 110
Query: 660 KVTPLQNA---NNLHVAKL 675
P + V ++
Sbjct: 111 GQMPESLLNECDEREVNEI 129
Score = 106 bits (268), Expect = 5e-25
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ G +H+A DLV L+ + P + + + +
Sbjct: 78 VHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERG-------QMPESLLNECDEREVNE 128
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAI--NNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
+ + + +G TALH+ + + +L++ GA P K+ +T L A
Sbjct: 129 I-------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181
Query: 917 QMTSLSLVRVL 927
+ + + ++
Sbjct: 182 EFRNREALDLM 192
Score = 74.1 bits (183), Expect = 3e-14
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
+ + N D +H AA T+ L+++G P I+N +G T LH+A +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 920 SLSLVRVL 927
+ + L
Sbjct: 65 CVDTAKYL 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 144 bits (366), Expect = 4e-40
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 12/160 (7%)
Query: 521 RGFTVLHVAALYGRIKVV-DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
R L AA G ++ V L+ ++ + G + L G + L LL GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59
Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY 639
S N+ D G + +H A G +K L+ E ++N + G P+H A + G+
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLV---EHGA---DVNVPDGTGALPIHLAVQEGH 113
Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
T+++ L ++ + R +TPL+ A + +L
Sbjct: 114 TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 133 bits (337), Expect = 2e-36
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T L V +G + +L+ GA N QD G SP+H AA G + L +L+ G
Sbjct: 33 NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N+ D G +HLA GH V L +++ + +G +PL A + G
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQRG 144
Query: 639 YTSIIQLLLDH 649
++ +L H
Sbjct: 145 AQDLVDILQGH 155
Score = 130 bits (330), Expect = 3e-35
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + N G TAL + G + L+ A N+ +P+H A + L ++
Sbjct: 28 HPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDTLK 85
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+L+ +VN D G +H A HT + + L + + ++ G T L +A Q
Sbjct: 86 VLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR 143
Query: 919 TSLSLVRVL 927
+ LV +L
Sbjct: 144 GAQDLVDIL 152
Score = 117 bits (297), Expect = 7e-31
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N+ ++ G + +H A G D +++L+ + AD+N+ P+H+A Q + ++V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVS 118
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
L + +++ +D RG T L A +L +L
Sbjct: 119 FLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 112 bits (283), Expect = 5e-29
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 807 GYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
L A + G VR LL + + R + T L + + +I LL
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQVMM-FGSTAIALELLKQG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ N QD G + +H AA + +L++ GA + + G +H+A Q ++V
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118
Query: 926 VLTHEA 931
L E+
Sbjct: 119 FLAAES 124
Score = 50.5 bits (122), Expect = 2e-07
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 874 RGNTALHYAAINNHTN-LATLLLKSGARPQIKNHYGQTCLHMAQ 916
R L AA + LL + P N +G+T L +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM 44
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 144 bits (366), Expect = 5e-40
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ L AA G ++ V + + + + +PLH+AA +V+ LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA ++ D G LH A + GH + L+ + +N + +PLH AA
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLV---KHGA---VVNVADLWKFTPLHEAAAK 118
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA--NNLHVAKLL 676
G I +LLL HGA+PT +N+ TPL + + LL
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 159
Score = 131 bits (333), Expect = 1e-35
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ R T LH AA Y R+ VV+ +L+ GAD +++D G PLH A + GH V LL+ G
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N+ D T LH A G K L+ + + N G++PL G
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLL---QHGA---DPTKKNRDGNTPLDLVKD-G 151
Query: 639 YTSIIQLLLDHGA 651
T I LL A
Sbjct: 152 DTDIQDLLRGDAA 164
Score = 128 bits (325), Expect = 2e-34
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N T LH A +V L+ + AD++ + PLH AC + +
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVAE 92
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
LL+ VN D T LH AA + LLL+ GA P KN G T L + +
Sbjct: 93 LLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 118 bits (299), Expect = 5e-31
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
NS+ L A G + V+ L + + + + TPLH A N +S+V LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQ 63
Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
+V+A+D G LH A H +A LL+K GA + + + T LH A
Sbjct: 64 HG-ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 923 LVRVL 927
+ ++L
Sbjct: 123 ICKLL 127
Score = 110 bits (277), Expect = 5e-28
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + G LH A S GHY++ LL+ + A +N+ K TPLH A I +
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICK 125
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LLL + ++ GNT L + T++ LL A
Sbjct: 126 LLLQHG-ADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 94.4 bits (236), Expect = 1e-22
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
A N + L A + ++ V+ L + N + R +T LH+AA N ++
Sbjct: 2 AMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LL+ GA K+ G LH A + +L
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Score = 53.2 bits (129), Expect = 3e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNA---NNLHVAKLL 676
N++ D L AA+ G ++ L N R+ TPL A N + V + L
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 143 bits (362), Expect = 1e-39
Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 8/150 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ L AA GR++ V +LE GA+ N+ + G P+ G V LLL G
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67
Query: 579 ASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A N D T +H A G + L ++ + G P+ A
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLH---RAGA---RLDVRDAWGRLPVDLAEEL 121
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
G+ + + L N ++ +
Sbjct: 122 GHRDVARYLRAAAGGTRGSNHARIDAAEGP 151
Score = 124 bits (313), Expect = 5e-33
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 2/115 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N N NS G + + +G + LL+ + A+ N P+H A + L +
Sbjct: 37 NPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
+L A ++ +D G + A H ++A L + + NH
Sbjct: 96 VLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 122 bits (309), Expect = 1e-32
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 13/139 (9%)
Query: 542 LELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE 601
+E A ++ + L AA RG + LL +GA+ N ++ G + + G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 602 TCVKALIYFNEQEVLNLNINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
+ L+ N + P+H AAR G+ + +L GA + +
Sbjct: 58 RVAELLL---LHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Query: 661 VTPLQNA---NNLHVAKLL 676
P+ A + VA+ L
Sbjct: 112 RLPVDLAEELGHRDVARYL 130
Score = 117 bits (295), Expect = 1e-30
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
L A + G + VR L+ A+ N P+ + + + L
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMMMGS-ARVAEL 62
Query: 860 LLAAKQCNVNAQDYRGNT-ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL N D T +H AA + +L ++GAR +++ +G+ + +A+++
Sbjct: 63 LLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 919 TSLSLVRVL 927
+ R L
Sbjct: 122 GHRDVARYL 130
Score = 112 bits (282), Expect = 7e-29
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGC-SPLHYAATRGHQNVLLLLLHS 577
+ G + V G +V +L+L GA+ N D P+H AA G + L++L +
Sbjct: 42 NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA +++ D G + LA GH + L A +G + A
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-----------AAGGTRGSNHARIDAAE 149
Query: 638 GYTSI 642
G + I
Sbjct: 150 GPSDI 154
Score = 91.8 bits (229), Expect = 9e-22
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 799 NINICNSDGYT-ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
N + T +H A G D + +L A +++ + P+ +A + + +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVA 127
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
R L AA + A +++
Sbjct: 128 RYLRAAA-GGTRGSN-----HARIDAAEGPSDIP 155
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 149 bits (378), Expect = 1e-39
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 10/163 (6%)
Query: 519 DDRGFTVLHVAALYGRIK-VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ L AA G + ++ L+ L + ++ D +PLH AA ++ LLL
Sbjct: 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA ++ D G LH A + GH + L+ +NA++ +PLH AA
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA------CVNAMDLWQFTPLHEAASK 134
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLN 677
+ LLL HGA+PTL N + + A
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Score = 140 bits (356), Expect = 1e-36
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N + + T LH+A +V+LL+ + AD++ + L PLH AC + +
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTE 108
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL VNA D T LH AA N + +LLL GA P + N +G++ + MA
Sbjct: 109 LLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 919 TSLSLVRVL 927
+
Sbjct: 168 ELRERLTYE 176
Score = 138 bits (351), Expect = 5e-36
Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 33/183 (18%)
Query: 519 DDRGFTVLHVAALYGRIKVVDL---------------------VLELGADTNSQDLCGCS 557
+ G + + +A + + L L Q +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 558 PLHYAATRGHQNVL----LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613
LH A H LLL GA++N + + T LH+A H ++ L +
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLH---KH 269
Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673
+NA+++ G + LH AA G+ +LLL +G++P++ + + T Q N V
Sbjct: 270 GA---KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-NEAVQ 325
Query: 674 KLL 676
++L
Sbjct: 326 QIL 328
Score = 134 bits (339), Expect = 2e-34
Identities = 48/185 (25%), Positives = 67/185 (36%), Gaps = 33/185 (17%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D R T LH+AA Y R+++V L+L+ GAD +++D G PLH A + GH V LLL G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D T LH A + L+ + VN G S + A
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLL---SHGA---DPTLVNCHGKSAVDMAPTPE 168
Query: 639 YTSIIQLLLDH---------------------GANPTLENKRKVTPLQNA------NNLH 671
+ + + T L A
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228
Query: 672 VAKLL 676
VA+LL
Sbjct: 229 VAELL 233
Score = 127 bits (323), Expect = 3e-32
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 519 DDRGFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
T LH A R +V +L+L GA+ N ++ +PLH AA R H +V+ +L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
GA +N D+ G TALH A GH + L+ + + ++ QG +
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLL---SYGS---DPSIISLQGFTAAQMGN 321
Query: 636 RWGYTSIIQLLLDHGANPTLENK 658
+Q +L +
Sbjct: 322 E-----AVQQILSESTPMRTSDV 339
Score = 127 bits (322), Expect = 4e-32
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYD-LVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ L A G+ + L+ LL + + K TPLH+A N + IV
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYNRVRIV 74
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LLL +V+A+D G LH A H + LLLK GA + + T LH A
Sbjct: 75 QLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133
Query: 918 MTSLSLVRVL 927
+ + +L
Sbjct: 134 KNRVEVCSLL 143
Score = 126 bits (319), Expect = 1e-31
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 799 NINICNSDGYTALHIATSLGHY---DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
TALH A + H + LL+ A++N + +TPLH+A + +
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHND 261
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
++ +L +NA D G TALH AA+ H LLL G+ P I + G T M
Sbjct: 262 VMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Score = 122 bits (310), Expect = 1e-30
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 24/152 (15%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-----VKQL----------- 842
+ + N G +A+ +A + + + + + VK+
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208
Query: 843 ----TPLHIACQN---NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
T LH A + + LLL NVN ++ T LH AA H ++ +L
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
K GA+ + GQT LH A L R+L
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Score = 122 bits (310), Expect = 2e-30
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-QNVLLLLLHSGASINLTDNEGNT 590
+G+ + + + A L AA G+ + ++ LL + + +D +T
Sbjct: 3 FGKSAL--DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
LHLA V+ L+ + +++A + G PLH A +G+ + +LLL HG
Sbjct: 61 PLHLAAGYNRVRIVQLLL---QHGA---DVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 651 ANPTLENKRKVTPLQNA---NNLHVAKLL 676
A + + TPL A N + V LL
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Score = 122 bits (309), Expect = 2e-30
Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
MD FT LH AA R++V L+L GAD + G S + A T + L
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF-- 177
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+G++ L A K L L + ++ LH A
Sbjct: 178 ---------KGHSLLQAAREADLAKVKKTLA-------LEIINFKQPQSHETALHCAVAS 221
Query: 638 GYTS---IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + +LLL GAN +NK +TPL A + V ++L
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Score = 122 bits (309), Expect = 2e-30
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + G LH A S GHY++ LL+ + A +N + Q TPLH A N + +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCS 141
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK---------------------S 897
LLL+ + + G +A+ A T K
Sbjct: 142 LLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 898 GARPQIKNHYGQTCLHMA 915
+ +T LH A
Sbjct: 201 EIINFKQPQSHETALHCA 218
Score = 114 bits (288), Expect = 1e-27
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N N D T LH+A H D++ +L + A +N + + Q T LH A +L R
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGHLQTCR 297
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
LLL+ + + +G TA +L + + + L A
Sbjct: 298 LLLSYG-SDPSIISLQGFTAAQMGNEAVQ-----QILSESTPMRTSDVDYR--LLEA 346
Score = 108 bits (272), Expect = 1e-25
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ T LHVAA V++++ + GA N+ D G + LH AA GH LLL G
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+ ++ +G TA + +E + L + + + L A++ G
Sbjct: 304 SDPSIISLQGFTAAQMG----NEAVQQILSE-------STPMRTSDVDY--RLLEASKAG 350
Score = 98.7 bits (247), Expect = 2e-22
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 14/122 (11%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
G +AL L + A + K+ L A N ++ LL
Sbjct: 3 FGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP-LN 48
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
N +A D R +T LH AA N + LLL+ GA K+ G LH A +
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 926 VL 927
+L
Sbjct: 109 LL 110
Score = 82.5 bits (205), Expect = 6e-17
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N +S G TALH A GH RLL++Y +D +I++ + T + + V+
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMGNE-----AVQ 325
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINN 886
+L+ + + D + L A+
Sbjct: 326 QILS-ESTPMRTSD--VDYRLLEASKAG 350
Score = 61.0 bits (149), Expect = 5e-10
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 23/95 (24%)
Query: 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG-YTSIIQ 644
G +AL LA + L AAR G ++
Sbjct: 2 EFGKSALDLADPSA-------------------KAVLTGEYKKDELLEAARSGNEEKLMA 42
Query: 645 LLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
LL N + RK TPL A N + + +LL
Sbjct: 43 LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Score = 52.5 bits (127), Expect = 3e-07
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
+ +I + G+TA + + V+ +++ + L A + +
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAGD 351
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 145 bits (368), Expect = 3e-39
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
D+ G T LH A V +++ A D +++ G +PL AA + +L L++S
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A +N D+ G +ALH A + L+ + N + NN+ ++PL AAR
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLL---KNGA---NKDMQNNREETPLFLAARE 200
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G ++LLDH AN + + P A + + +LL
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 139 bits (353), Expect = 3e-37
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 22/175 (12%)
Query: 519 DDRGFTVLHVAALYG-------------RIKVVDLVLELGAD-TNSQDLCGCSPLHYAAT 564
GFT L +A+ G V+ + GA N D G + LH AA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 565 RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
+ LL + A N+ DN G T LH A + + + LI +++A
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI-----RNRATDLDARM 121
Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ G +PL AAR +++ L++ A+ + + L A NN+ A +L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Score = 137 bits (349), Expect = 1e-36
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ DG T L +A L ++ LIN AD+N V + + + LH A NN+
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAV 174
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL N + Q+ R T L AA A +LL A I +H + +AQ+
Sbjct: 175 VLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 919 TSLSLVRVL 927
+VR+L
Sbjct: 234 MHHDIVRLL 242
Score = 133 bits (338), Expect = 3e-35
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G T L +AA +++ ++ AD N+ D G S LH+AA + + ++LL +G
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ ++ +N T L LA G K L+ + N + ++ P A
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLL---DHFA---NRDITDHMDRLPRDIAQERM 234
Query: 639 YTSIIQLLLDHGANP 653
+ I++LL +
Sbjct: 235 HHDIVRLLDLEHHHH 249
Score = 131 bits (332), Expect = 2e-34
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
N + G TALH+A D + L+ AD NI + + TPLH A + + ++L
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
+ + +++A+ + G T L AA + L+ S A + G++ LH A + +
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 921 LSLVRVL 927
+ VL
Sbjct: 170 VDAAVVL 176
Score = 117 bits (295), Expect = 2e-29
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G +ALH A ++ + D +L+ A+ ++ ++ TPL +A + + +
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAK 207
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
+LL N + D+ A H ++ LL +
Sbjct: 208 VLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 102 bits (256), Expect = 3e-24
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 24/148 (16%)
Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLL-------------LLLHSGASI-NLTDNEGNTAL 592
D N + G +PL A+ G ++ GAS+ N TD G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA- 651
HLA K L+ E + N +N G +PLHAA + Q+L+ + A
Sbjct: 62 HLAARYSRSDAAKRLL---EASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 652 NPTLENKRKVTPLQNA---NNLHVAKLL 676
+ TPL A + + L
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDL 143
Score = 95.2 bits (238), Expect = 6e-22
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+++N+ DG+T L IA+ G + + + +++
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVI 39
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+ N D G TALH AA + ++ A LL++ A I+++ G+T LH A
Sbjct: 40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 918 MTSLSLVRVL 927
+ + ++L
Sbjct: 100 ADAQGVFQIL 109
Score = 72.1 bits (178), Expect = 4e-14
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++R T L +AA G + ++L+ A+ + D P A R H +++ LL
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246
Query: 579 ASIN 582
+
Sbjct: 247 HHHH 250
Score = 34.0 bits (79), Expect = 0.18
Identities = 4/33 (12%), Positives = 8/33 (24%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQ 551
D +A +V L+ +
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 141 bits (357), Expect = 3e-39
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 8/135 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
L AA G+++ V +LE GAD N+ + G P+ G V LLL G
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67
Query: 579 ASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A N D T +H A G + L ++ + G P+ A
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLH---RAGA---RLDVCDAWGRLPVDLAEEQ 121
Query: 638 GYTSIIQLLLDHGAN 652
G+ I + L +
Sbjct: 122 GHRDIARYLHAATGD 136
Score = 129 bits (327), Expect = 4e-35
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
I++ L A + G + VR L+ AD N + R + P+ + + +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMMMGS-AQVAE 61
Query: 859 LLLAAKQCNVNAQDYRGNT-ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
LLL N D T +H AA + +L ++GAR + + +G+ + +A++
Sbjct: 62 LLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 918 MTSLSLVRVL 927
+ R L
Sbjct: 121 QGHRDIARYL 130
Score = 126 bits (318), Expect = 6e-34
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 11/136 (8%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
+ + L AA RG + LL +GA N + G + + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 605 KALIYFNEQEVLNLNINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
+ L+ N + P+H AAR G+ + +L GA + + P
Sbjct: 61 ELLL---LHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 664 LQNA---NNLHVAKLL 676
+ A + +A+ L
Sbjct: 115 VDLAEEQGHRDIARYL 130
Score = 118 bits (299), Expect = 2e-31
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N N G + + +G + LL+ + A+ N P+H A + L +
Sbjct: 37 DPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+L ++ D G + A H ++A L +
Sbjct: 96 VLH-RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 50.5 bits (122), Expect = 1e-07
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
+++C++ G + +A GH D+ R L D
Sbjct: 103 RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 141 bits (357), Expect = 3e-39
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ RG T+LH+A++ G I V+ +L+ G+D N +D G +PLH A GH V+ LLL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N T + ++ LH A NGH VK L+ + NAVN G P+
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLL---SYGA---SRNAVNIFGLRPVDYTDDES 120
Query: 639 YTSIIQLLLDHGAN 652
S++ L + ++
Sbjct: 121 MKSLLLLPEKNESS 134
Score = 135 bits (342), Expect = 3e-37
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N G T LHIA+ G V L+ +D N+ TPLH AC + +L +V
Sbjct: 3 DPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVE 60
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LLL K VN Y+ ++ LH AA N H ++ LLL GA N +G +
Sbjct: 61 LLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 919 TSLSLVRVLTHEA 931
+ SL+ +
Sbjct: 120 SMKSLLLLPEKNE 132
Score = 128 bits (325), Expect = 7e-35
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
G D + + G + LH A+ +G + LL +G+ N+ D+ G T LH A N+GH V
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
+ L+ + + +N Q DSPLH AA+ G+ I++LLL +GA+ N + P+
Sbjct: 60 ELLL---QHKA---LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Query: 665 QNA---NNLHVAKLL 676
+ + L
Sbjct: 114 DYTDDESMKSLLLLP 128
Score = 117 bits (295), Expect = 6e-31
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N+ + G+T LH A + GH +V LL+ ++A +N +PLH A +N ++ IV+
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGHVDIVK 93
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LLL+ + NA + G + Y + +L L K+ +
Sbjct: 94 LLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 92.9 bits (232), Expect = 2e-22
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
D T + T LHIA ++ V LL + N +D+ G T LH A + H +
Sbjct: 2 IDPF--TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
LLL+ A + + LH A + + +V++L
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 43.2 bits (103), Expect = 4e-05
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
+ N N G + L+ L +
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 32.8 bits (76), Expect = 0.18
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
+ G + ++ L + + + S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 140 bits (356), Expect = 6e-39
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
L AA G+ V +++ GA D G SPLH AA GH + +LL +G S
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
+ T LH+A + GH V+ L+ + ++NA + + LH A +
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLL---KHGA---DVNAKDMLKMTALHWATEHNHQE 114
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++LL+ +GA+ ++K T + N +A++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 130 bits (330), Expect = 2e-35
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ G + LH+A GH+ +L+ + T+V + TPLH+A + +IV
Sbjct: 27 PFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVE 84
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL +VNA+D TALH+A +NH + LL+K GA ++ + +T ++
Sbjct: 85 VLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143
Query: 919 TSLSLVRVL 927
+ L +L
Sbjct: 144 GNEDLAEIL 152
Score = 124 bits (313), Expect = 4e-33
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G + LH+AA YG +++L G +++ +PLH AA+ GH N++ +LL G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N D TALH AT + H+ V+ LI + +++ + + + G
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLI---KYGA---DVHTQSKFCKTAFDISIDNG 144
Query: 639 YTSIIQLL 646
+ ++L
Sbjct: 145 NEDLAEIL 152
Score = 121 bits (306), Expect = 4e-32
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
D L A G D VR+L+ A T +PLH+A Q + S +LL A
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG- 57
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ +A+ T LH AA H N+ +LLK GA K+ T LH A + +V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 926 VL 927
+L
Sbjct: 118 LL 119
Score = 75.1 bits (186), Expect = 6e-16
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
+ L A G + V+ L+ + G SPLH AA++G+ S ++L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILM---ANGA---PFTT-DWLGTSPLHLAAQYGHFSTTEVL 53
Query: 647 LDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
L G + K TPL A + ++ ++L
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 144 bits (367), Expect = 1e-38
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 13/162 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G + + A +++V +L GA N + PLH AAT ++ +LL SG
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG-DSPLHAAARW 637
+ D++GNTAL+ A ++G+ VK + ++ N + G + + A
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFV---KK---NWRLMFYGKTGWKTSFYHAVML 139
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
SI+ L + + ++ + ++ + LL
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILL 180
Score = 141 bits (357), Expect = 2e-37
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 12/160 (7%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
LH AA K+V ++L G D + D G + L+YA G+ + L + +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 582 NLTDNEG-NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
G T+ + A + V + + S +H + G+
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFL-------SEIPSTFDLAILLSCIHITIKNGHV 174
Query: 641 SIIQLLLDHGANPTLENKRKVTP-LQNA---NNLHVAKLL 676
++ LLLD+ + N P ++ A ++ + + L
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214
Score = 134 bits (340), Expect = 3e-35
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + G++A + A + + LV L+N A N++ PLH A + IV+
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN---EFPLHQAATLEDTKIVK 79
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG-QTCLHMAQQ 917
+LL + + + D +GNTAL+YA + + L +K R G +T + A
Sbjct: 80 ILLFSG-LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138
Query: 918 MTSLSLVRVL 927
+ +S+V
Sbjct: 139 LNDVSIVSYF 148
Score = 130 bits (329), Expect = 1e-33
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G + + + K + DT D+ G S +YA + ++ LL++GA
Sbjct: 1 GMDLSRIN--TWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
NL +NE LH A VK L+ L+ + +++G++ L+ A G
Sbjct: 58 NLLENE--FPLHQAATLEDTKIVKILL---FS---GLDDSQFDDKGNTALYYAVDSGNMQ 109
Query: 642 IIQLLLDHGANPTLENKR-KVTPLQNA---NNLHVAKLL 676
++L + K T +A N++ +
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148
Score = 129 bits (327), Expect = 2e-33
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 3/130 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + + G TAL+ A G+ V+L + + + T + A N++SIV
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT-CLHMAQQ 917
L + + +H N H ++ LLL N + +A
Sbjct: 147 YFL--SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204
Query: 918 MTSLSLVRVL 927
+ +++ L
Sbjct: 205 NKDIEMLQAL 214
Score = 117 bits (295), Expect = 4e-29
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 519 DDRGF-TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
G+ T + A + + +V L S +H GH ++++LLL
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDY 183
Query: 578 GASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
S N ++ + LA +N ++AL + ++ NI +
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF---KYDI---NIYS-------ANLENVL 230
Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLH 671
I +++++ ++ K + N L
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLD 265
Score = 109 bits (275), Expect = 2e-26
Identities = 15/123 (12%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + +HI GH D++ LL++Y N + + + +A N ++ +++
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
L N+ +A + + +A ++++ + ++ + ++
Sbjct: 213 ALFKYD-INI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264
Query: 919 TSL 921
+
Sbjct: 265 DEI 267
Score = 107 bits (270), Expect = 7e-26
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
G I T ++ ++ D + + A +NN+ +V LL
Sbjct: 1 GMDLSRINT--WKSKQLKSFLS-SKDTFKADV-HGHSASYYAIADNNVRLVCTLLN-AGA 55
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
N + LH AA T + +LL SG + G T L+ A ++ V++
Sbjct: 56 LKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113
Query: 927 L 927
Sbjct: 114 F 114
Score = 94.1 bits (235), Expect = 3e-21
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 14/135 (10%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSP-LHYAATRGHQNVLLLLLHS 577
+ +H+ G + ++ L+L+ TN+ + P + A +L L
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+I +A K +I E+ V + + D + +
Sbjct: 218 DINI-------YSANLENVLLDDAEIAKMII---EKHV---EYKSDSYTKDLDIVKNNKL 264
Query: 638 GYTSIIQLLLDHGAN 652
L
Sbjct: 265 DEIISKNKELRLMYV 279
Score = 89.9 bits (224), Expect = 7e-20
Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 799 NINICNSDGYT-ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ N NS + + +A ++++ L Y +I + ++ I
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIA 237
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
++++ K + Y + + + L+
Sbjct: 238 KMIIE-KHVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275
Score = 76.0 bits (188), Expect = 4e-15
Identities = 7/107 (6%), Positives = 27/107 (25%), Gaps = 13/107 (12%)
Query: 519 DDRGFT-VLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ F + +A I+++ + + + S + +++
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEK 243
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
+ + + + E ++ +N N
Sbjct: 244 HVEYKSDSYTKDLDIVKNNK-----LDEIISKNKELRLMYVNCVKKN 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 144 bits (366), Expect = 1e-38
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++ G+T LH A R +V+L+L GAD + G +P AA G +L L L G
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLNINAVNNQGDSPLHAA 634
A +N D G TA A G +K L N + + + G + L A
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 635 ARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNA-------NNLHVAKLL 676
A G+ ++++LLD GA+ + L +A + + LL
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Score = 141 bits (358), Expect = 2e-37
Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G T +AA+ G +K++ L L GAD N D G + AA G L L G
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 579 ASINLTDN----------EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGD 628
A++NL G TAL A GH +K L+ + + ++NA +N G
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGR 183
Query: 629 SPLHAAARWG----YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ L A +I LLLDHGA+ + +R TPL A +L + + L
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Score = 141 bits (357), Expect = 2e-37
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHSGAS 580
+L A + +V +LE GA+ N Q+ G +PLH A ++++ LLL GA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
L G T LA G +K + + ++N + G + AA +G
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGA---DVNECDFYGFTAFMEAAVYGKV 118
Query: 641 SIIQLLLDHGANPTLENKRKV----------TPLQNA---NNLHVAKLL 676
++ L GAN L K K T L +A ++ V K+L
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167
Score = 139 bits (353), Expect = 7e-37
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYA 562
+NL+ ++K + + G T L AA G ++V+ L+ E+GAD N+ D G + L +A
Sbjct: 131 VNLR-RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
Query: 563 ATRGHQNVLL----LLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
+ + LLL GA +N+ G T L LA H V+ L+ E ++
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL-----EQEHI 244
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
IN ++ G + L A I +LL GA+
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 138 bits (350), Expect = 2e-36
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD----------LCGCSPLHYAATRGHQ 568
D GFT AA+YG++K + + + GA+ N + G + L AA +GH
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 569 NVL-LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL---NLNINAVN 624
VL +LL GA +N DN G AL A + ++ V+A+ +L ++N
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT-----HLLLDHGADVNVRG 216
Query: 625 NQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
+G +PL A + ++Q LL+ + T L A +A+LL
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Score = 130 bits (330), Expect = 8e-34
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL---------TPLHIAC 849
++N C+ G+TA A G ++ L A++N+ + K+ T L A
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
+ ++ ++++LL +VNA D G AL +A +++ + + LLL GA ++
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
G+T L +A + L LV+ L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRL 238
Score = 129 bits (328), Expect = 1e-33
Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 1/124 (0%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
+ L A DLV+ L+ A++N TPLH A Q + IV LLL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-R 60
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
+ + G T AAI L L L GA + YG T A +
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 924 VRVL 927
++ L
Sbjct: 121 LKFL 124
Score = 122 bits (308), Expect = 8e-31
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + +G T +A G L++L ++ AD+N T A + ++
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALK 122
Query: 859 LLLAAKQCNVNAQD----------YRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHY 907
L + NVN + G TAL AA H + +LL + GA ++
Sbjct: 123 FLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 908 GQTCLHMA 915
G+ L A
Sbjct: 182 GRNALIHA 189
Score = 117 bits (297), Expect = 2e-29
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYD----LVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
++N C++ G AL A + LL+++ AD+N+ + TPL +A + +L
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHL 232
Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
+V+ LL + +N D G TAL A +A LL K GA +
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 115 bits (290), Expect = 2e-28
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLS-- 855
+ G TAL A GH +++++L++ AD+N + + L A +++ S
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDSDV 198
Query: 856 --IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCL 912
I LLL +VN + RG T L A H L LL + + G+T L
Sbjct: 199 EAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Query: 913 HMAQQMTSLSLVRVL 927
+A ++ + +L
Sbjct: 258 LLAVELKLKKIAELL 272
Score = 81.7 bits (203), Expect = 4e-17
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ-GDSPLHAAARWGYTSII 643
E N L A N V+ L+ E N+N + G +PLH A + I+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLL---EGGA---NVNFQEEEGGWTPLHNAVQMSREDIV 55
Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+LLL HGA+P L K TP A ++ + KL
Sbjct: 56 ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91
Score = 69.4 bits (171), Expect = 5e-13
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE-LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+RG T L +A + +V +LE + N D G + L A + + LL
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 578 GASINLTDN 586
GAS + D
Sbjct: 276 GASTDCGDL 284
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 142 bits (361), Expect = 2e-38
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 12/166 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ +L ++L G +V ++ D + + G + LH A GH ++ L+ G
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN---QGDSPLHAAA 635
++N D++G T LH A + + K L+ E + A+ Q +
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLV---ESGA---AVFAMTYSDMQTAADKCEEM 147
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNA 678
GYT Q L + NK + L + N+ +
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193
Score = 140 bits (356), Expect = 7e-38
Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 25/231 (10%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G L K + G L + L ++ G +++ +++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+L ++EG TALH A GH VK L+ + V N+NA ++ G +PLH AA
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLV---QFGV---NVNAADSDGWTPLHCAASCN 114
Query: 639 YTSIIQLLLDHGANPTLENK---RKVTPLQNA---NNLHVAKLLNAYVHKPK-------- 684
+ + L++ GA + ++ L K
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIY 174
Query: 685 PLYNYLV--PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRN 733
L++Y E + + + D E + +N +EG PRN
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHR--EDEDEIEWWWARLNDKEGYVPRN 223
Score = 122 bits (309), Expect = 1e-31
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ ++ N +G TALH A GH ++V+ L+ + ++N TPLH A NN+ + +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCK 120
Query: 859 LLLAAKQCNVNAQDYRGN---TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
L+ V A Y +T + L + I N L
Sbjct: 121 FLV-ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179
Score = 122 bits (309), Expect = 2e-31
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
G +L I + + L L + +V+ ++ +
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY-EV 60
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+ + + G TALH A HT + L++ G + G T LH A ++ + +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 926 VL 927
L
Sbjct: 121 FL 122
Score = 117 bits (295), Expect = 1e-29
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ N L ++ G +DLV+ +I D ++ + +T LH A + IV+
Sbjct: 30 RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH---YGQTCLHMA 915
L+ NVNA D G T LH AA N+ + L++SGA +
Sbjct: 88 FLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Query: 916 QQMTSLSLVRVL 927
+ + L
Sbjct: 147 MEEGYTQCSQFL 158
Score = 106 bits (266), Expect = 8e-26
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR--VKQLTPLHIACQNNNLSI 856
N+N +SDG+T LH A S + + + L+ A + +T ++ +
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI--KNHYGQTCLHM 914
+ L Q + + AL N L +K G I + +
Sbjct: 155 SQFLY-GVQEKMGIMNKGVIYALWDYEPQNDDELP---MKEGDCMTIIHREDEDEIEWWW 210
Query: 915 AQ 916
A+
Sbjct: 211 AR 212
Score = 51.5 bits (124), Expect = 3e-07
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ G +L N + + G R + L + LV+ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRI 56
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 140 bits (355), Expect = 2e-38
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 14/162 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G + G + AD S+ +P AA + + L LL
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-D 66
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW 637
++ D G TAL G + CV+ L E +++ + G + LH AA +
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLA---EAGA---DLDHRDMRGGLTALHMAAGY 120
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++ L++ GA+ +E++R +T L+ A
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Score = 130 bits (329), Expect = 6e-35
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T AA + + +LE D ++ D G + L + A G + LL +G
Sbjct: 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99
Query: 579 ASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A ++ D G TALH+A V+AL+ E +I + +G + L A
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGA---DIEVEDERGLTALELAREI 153
Query: 638 GYTSIIQLLLDHGAN 652
T+ + G
Sbjct: 154 LKTTPKGNPMQFGRR 168
Score = 124 bits (314), Expect = 7e-33
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ S+ T A + L+ D++ V + T L + VR
Sbjct: 37 AADV-VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGR-TALLFVAGLGSDKCVR 93
Query: 859 LLLAAKQCNVNAQDYR-GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
LL A +++ +D R G TALH AA + L++ GA ++++ G T L +A++
Sbjct: 94 LLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Query: 918 MTSLSLVRVL 927
+ +
Sbjct: 153 ILKTTPKGNP 162
Score = 121 bits (305), Expect = 1e-31
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + +G TAL LG VRLL AD++ LT LH+A +V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
L+ ++ +D RG TAL A T ++ G R ++
Sbjct: 128 ALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 120 bits (303), Expect = 2e-31
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ + +G I GH AD+ + TP A + + +
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 60
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHMAQ 916
LL + +V+A D G TAL + A LL ++GA ++ G T LHMA
Sbjct: 61 SQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 917 QMTSLSLVRVL 927
+V L
Sbjct: 119 GYVRPEVVEAL 129
Score = 110 bits (278), Expect = 4e-28
Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 24/132 (18%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHS 577
D+ G T L A G K V L+ E GAD + +D+ G + LH AA V+ L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
GA I + D G TAL LA T + R
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPM-----------------------QFGRRI 169
Query: 638 GYTSIIQLLLDH 649
G +I +L
Sbjct: 170 GLEKVINVLEGQ 181
Score = 79.8 bits (198), Expect = 3e-17
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAA 635
+ + T EG + +GH Y I A V ++ ++P AA
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----------IAADVVSEYETPWWTAA 52
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
R + LL + ++ T L + +LL
Sbjct: 53 RKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 95
Score = 55.2 bits (134), Expect = 7e-09
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNL 670
EV + + +G + G++ A+ TP A +
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 57
Query: 671 HVAKLL 676
L
Sbjct: 58 QALSQL 63
Score = 50.2 bits (121), Expect = 4e-07
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
+I + + G TAL +A + + + I + + L
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178
Score = 47.9 bits (115), Expect = 2e-06
Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 3/65 (4%)
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
+ G + H+ A +T A + +
Sbjct: 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQ 62
Query: 927 LTHEA 931
L +
Sbjct: 63 LLEDR 67
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 137 bits (347), Expect = 6e-38
Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D G T LHLA NGH VK L+ E ++NA + G +PLH AAR G+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL---EAGA---DVNAKDKNGRTPLHLAARNGHLE 115
Query: 642 IIQLLLDHGA 651
+++LLL+ GA
Sbjct: 116 VVKLLLEAGA 125
Score = 126 bits (320), Expect = 2e-34
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
+G T LH+A GH ++V+LL+ AD+N + TPLH+A +N +L +V+LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
+VNA+D G T LH AA N H + LLL++GA K+ G+T LH+A + L +V+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 926 VL 927
+L
Sbjct: 119 LL 120
Score = 121 bits (306), Expect = 2e-32
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PLH AA GH V+ LLL +GA +N D G T LHLA NGH VK L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
++NA + G +PLH AAR G+ +++LLL+ GA+ ++K TPL A +L
Sbjct: 59 A---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 672 VAKLL 676
V KLL
Sbjct: 116 VVKLL 120
Score = 117 bits (295), Expect = 5e-31
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + +G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LLL A +VNA+D G T LH AA N H + LLL++GA
Sbjct: 86 LLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 103 bits (261), Expect = 2e-26
Identities = 46/90 (51%), Positives = 57/90 (63%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N D G T LHLA NGH VK L+
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 67.4 bits (166), Expect = 1e-13
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 579 A 579
A
Sbjct: 125 A 125
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 141 bits (357), Expect = 3e-37
Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D + + G ++ + T + G A + G +L LL G
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERG 63
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A IN + +G TALH A + + VK L+ E NIN +N+G PLHAAA G
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLV---ENGA---NINQPDNEGWIPLHAAASCG 117
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
Y I + L+ GA+ N TPL A + +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Score = 137 bits (347), Expect = 6e-36
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G T LH A + + +V ++E GA+ N D G PLH AA+ G+ ++ L+ G
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A + ++EG+T L +A E ++ +N ++ R
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNE------------VNRQGVDIEAARKEEERIM 177
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
Q L N K T L A V KLL
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Score = 126 bits (318), Expect = 5e-32
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ DG A S G + V L+ ADIN V LT LH AC ++N+ +V+
Sbjct: 33 KTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVK 90
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
L+ N+N D G LH AA + ++A L+ GA N G T L +A++
Sbjct: 91 FLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149
Query: 919 TSLSLVRVL 927
L++
Sbjct: 150 AMEELLQNE 158
Score = 123 bits (312), Expect = 2e-31
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
+ G T L +A +++ V G D + ++ L
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-------ARKEEERIMLRDARQWLNSG 188
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
+ G TALH+A G+ +K LI + ++N + G +PLHAAA W
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLI---QA---RYDVNIKDYDGWTPLHAAAHW 242
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G ++L+++ + NK T A ++ +L
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
Score = 120 bits (304), Expect = 3e-30
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+N D A + D + L + + + T LH+A +++L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG-TALHVAAAKGYTEVLKL 217
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
L+ + +VN +DY G T LH AA +L+++ + N GQT +A +
Sbjct: 218 LIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Score = 118 bits (298), Expect = 2e-29
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 6/142 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ + G + LH AA +G+ VL LL+ +
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
+N+ D +G T LH A + G E + L+ E ++ AVN G + A
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILV---ENLC---DMEAVNKVGQTAFDVADEDI 276
Query: 639 YTSIIQLLLDHGANPTLENKRK 660
+ +L + + ++K
Sbjct: 277 LGYLEELQKKQNLLHSEKREKK 298
Score = 117 bits (295), Expect = 5e-29
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIV 857
++ NS+G T L IA +L++ +N + DI +
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEERIMLRDAR 182
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+ L + N G TALH AA +T + LL+++ IK++ G T LH A
Sbjct: 183 QWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 918 MTSLSLVRVL 927
R+L
Sbjct: 242 WGKEEACRIL 251
Score = 116 bits (292), Expect = 1e-28
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+ + ++ + +G + + R + AC + + V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLR 58
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
LL ++N + G TALH A I+++ ++ L+++GA ++ G LH A
Sbjct: 59 LLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 920 SLSLVRVL 927
L + L
Sbjct: 118 YLDIAEYL 125
Score = 109 bits (276), Expect = 1e-26
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N G TALH+A + G+ ++++LLI R D+NI TPLH A R
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACR 249
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+L+ C++ A + G TA A + L L K
Sbjct: 250 ILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Score = 99.1 bits (248), Expect = 6e-23
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
D G + L + + ++G L A ++G V L+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLL 60
Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
E+ +IN N G + LH A +++ L+++GAN + PL A
Sbjct: 61 ---ERGA---DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114
Query: 668 --NNLHVAKLL 676
L +A+ L
Sbjct: 115 SCGYLDIAEYL 125
Score = 77.9 bits (193), Expect = 1e-15
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
+ + D + L G ET ++ + + + G + AA G T
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPV---VKRK---KTKVKFDDG-AVFLAACSSGDT 53
Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ LL+ GA+ N +T L A +N+ + K L
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92
Score = 63.3 bits (155), Expect = 7e-11
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G+T LH AA +G+ + +++E D + + G + A + L
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288
Query: 579 ASINLTDNEGN 589
+ + +
Sbjct: 289 LLHSEKREKKS 299
Score = 41.3 bits (98), Expect = 8e-04
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
++ N G TA +A L L +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 138 bits (351), Expect = 4e-37
Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 8/170 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T AA + + +LE D ++ D G + L + A G + LL +G
Sbjct: 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100
Query: 579 ASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
A ++ D G TALH+A V+AL+ E +I + +G + L A
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGA---DIEVEDERGLTALELAREI 154
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLY 687
T+ + G LE V Q V +++ Y
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204
Score = 136 bits (344), Expect = 4e-36
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 14/162 (8%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G + G + AD S+ +P AA + + L LL
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-D 67
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW 637
++ D G TAL G + CV+ L E +++ + G + LH AA +
Sbjct: 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLA---EA---GADLDHRDMRGGLTALHMAAGY 121
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+++ L++ GA+ +E++R +T L+ A
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163
Score = 123 bits (312), Expect = 6e-32
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ + +G TAL LG VRLL AD++ LT LH+A +V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
L+ ++ +D RG TAL A T ++ G R + Q
Sbjct: 129 ALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVF 184
Query: 919 TSLSLVRVL 927
+ ++
Sbjct: 185 EYAEVDEIV 193
Score = 119 bits (301), Expect = 2e-30
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ + +G I GH AD+ + TP A + + +
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 61
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHMAQ 916
LL + +V+A D G TAL + A LL ++GA ++ G T LHMA
Sbjct: 62 SQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119
Query: 917 QMTSLSLVRVL 927
+V L
Sbjct: 120 GYVRPEVVEAL 130
Score = 106 bits (266), Expect = 8e-26
Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 19/146 (13%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA Y R +VV+ ++ELGAD +D G + L A + G I
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
L + + I +G +
Sbjct: 171 GLEK---VINVLEGQVFEYAEVD--------------EIVEKRGKGKDVEYLVRWKDGGD 213
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA 667
+ H A ++ L+ A
Sbjct: 214 CEWVKGVHVAEDVAKDYE--DGLEYA 237
Score = 91.9 bits (229), Expect = 7e-21
Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 15/117 (12%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+I + + G TAL +A + + + I ++++ + +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG----LEKVINVLEGQVFEYAEVD- 190
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
+ + +G + + + + A K+ + L A
Sbjct: 191 --------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYA 237
Score = 79.6 bits (197), Expect = 1e-16
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAA 634
+ + T EG + +GH Y I A V ++ ++P A
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----------IAADVVSEYETPWWTA 52
Query: 635 ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
AR + LL + ++ T L + +LL
Sbjct: 53 ARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 96
Score = 67.2 bits (165), Expect = 2e-12
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 24/104 (23%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC----------------------GC 556
D+RG T L +A + ++ G + + G
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600
+ + + + A D E L A
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242
Score = 66.9 bits (164), Expect = 2e-12
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 17/98 (17%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQ-------------CNVNAQDYRGNTALHYAAINNHTN 889
I + + L+ K +V + T AA
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQ 59
Query: 890 LATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ LL+ + G+T L + S VR+L
Sbjct: 60 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96
Score = 49.5 bits (119), Expect = 2e-06
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 5/60 (8%)
Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVK-QLTPLHIACQNNNL 854
E I G ++ D + + A+ K L A + +
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV----AKDYEDGLEYAVAESVI 243
Score = 48.0 bits (115), Expect = 4e-06
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNL 670
EV + + +G + G++ A+ TP A +
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58
Query: 671 HVAKLL 676
L
Sbjct: 59 QALSQL 64
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 138 bits (351), Expect = 9e-36
Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 519 DDRGFTVLHVAALYGRIKVVDL--------VLELGADTNSQDLCGCSPLHYAATRGHQNV 570
TVLH A + + + GAD N+ D +PL A + +
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Query: 571 LLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSP 630
+ L+ +GA + + +ALH A N + ++ L +I ++ G +
Sbjct: 182 VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML---NSTKLKGDIEELDRNGMTA 238
Query: 631 LHAAARWGYT---SIIQLLLDHGAN--------PTLENKRKVTPLQNA---NNLHVAKLL 676
L A + +LL++ GA E + T L A +N+ + K L
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Score = 137 bits (347), Expect = 3e-35
Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 22/175 (12%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE---LGADTNSQDLCGCSPLHYAATRGHQNVLL--- 572
+ + LH AA ++ +L L D D G + L A ++ +
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255
Query: 573 LLLHSGASINLT--------DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
LL+ GA ++ +G TALH A + VK L+ N + +
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-----GSNKDKQD 310
Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G +P+ AA+ G ++ L+ GA+ + T Q A N+ ++ +
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 133 bits (336), Expect = 8e-34
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLV---RLLINYRADINIVTRVKQ-------LTPLHIA 848
+I + +G TAL I D V +LL+ A ++ ++ T LH A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
Q +N+ IV+ L+ K N + QD G T + AA + L++ GA + +
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346
Query: 909 QTCLHMAQQMTSLSLVRVL 927
T +AQ ++V +
Sbjct: 347 HTARQLAQANNHHNIVDIF 365
Score = 123 bits (311), Expect = 1e-30
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 18/146 (12%)
Query: 519 DDRGFTVLHVAALYG---RIKVVDLVLELGADTN--------SQDLCGCSPLHYAATRGH 567
D G T L + A ++ L++E GA + S+ G + LHYAA +
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 568 QN-VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
V L+ G++ + D +G T + LA G V LI +Q ++ AV+
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI---QQGA---SVEAVDAT 345
Query: 627 GDSPLHAAARWGYTSIIQLLLDHGAN 652
+ A + +I+ +
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 122 bits (309), Expect = 3e-30
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 10/136 (7%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ LH + G Y + + +I T LH N++
Sbjct: 86 IPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSE 142
Query: 859 LLLAAKQ-------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC 911
L+ + +VNA D NT L A + L L+K+GA P I N ++
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202
Query: 912 LHMAQQMTSLSLVRVL 927
LH A ++ +
Sbjct: 203 LHQAAANRDFGMMVYM 218
Score = 112 bits (282), Expect = 8e-27
Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR--- 830
L A + E P+T E +NI T LH S + LI +
Sbjct: 97 KLHTEAAGSYAITE----PITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKE 151
Query: 831 -----ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
AD+N + + TPL +A +V L+ A + + +ALH AA N
Sbjct: 152 CIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAAN 209
Query: 886 NHTNLATLLL---KSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
+ +L K + + G T L + V
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253
Score = 104 bits (261), Expect = 4e-24
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIV 857
+ G TALH A + + +V+ L+ + ++ + + TP+ +A Q + +V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRIEVV 329
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
L+ + +V A D +TA A NNH N+ + +
Sbjct: 330 MYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 104 bits (261), Expect = 5e-24
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYA 562
++ + K + +G T LH AA + +V LV E G++ + QD G +P+ A
Sbjct: 264 VDYDGAARKDSE---KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
A G V++ L+ GAS+ D +TA LA N H V
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 101 bits (253), Expect = 4e-23
Identities = 26/179 (14%), Positives = 44/179 (24%), Gaps = 28/179 (15%)
Query: 509 SQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ 568
+ L A+ G IK N P G+
Sbjct: 24 EEKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGND 74
Query: 569 NVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGD 628
+ + + E LH + + + + V NI +
Sbjct: 75 FLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAI-TEPIT---RESV---NIIDPRH-NR 126
Query: 629 SPLHAAARWGYTSIIQLLLDH--------GANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ LH A + L+ H GA+ + + TPL A + L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185
Score = 100 bits (250), Expect = 1e-22
Identities = 21/137 (15%), Positives = 35/137 (25%), Gaps = 12/137 (8%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N G+ L + LH + +I
Sbjct: 53 QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP-ESPIKLHTEA-AGSYAITE 110
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS--------GARPQIKNHYGQT 910
+ + N+ + T LH+ A N+ + L+ GA + T
Sbjct: 111 PIT-RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168
Query: 911 CLHMAQQMTSLSLVRVL 927
L +A LV L
Sbjct: 169 PLMLAVLARRRRLVAYL 185
Score = 85.8 bits (213), Expect = 6e-18
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 13/128 (10%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+ + +L A+ G+ R + + L P N N +
Sbjct: 30 NHQSITSSQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDF 79
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
Q + LH A + + + + +T LH +
Sbjct: 80 NHTNLQ-IPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR-HNRTVLHWIASNS 136
Query: 920 SLSLVRVL 927
S L
Sbjct: 137 SAEKSEDL 144
Score = 65.4 bits (160), Expect = 3e-11
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ G T + +AA GRI+VV +++ GA + D + A H N++ +
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Query: 579 ASI 581
Sbjct: 370 PER 372
Score = 53.4 bits (129), Expect = 2e-07
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADI 833
++ ++ +TA +A + H+++V + R +
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 38.0 bits (89), Expect = 0.013
Identities = 6/66 (9%), Positives = 12/66 (18%), Gaps = 9/66 (13%)
Query: 862 AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSL 921
K + +L A+ + + HY +
Sbjct: 24 EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNE---------LQHYSLYPNPQGYGNGND 74
Query: 922 SLVRVL 927
L
Sbjct: 75 FLGDFN 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 130 bits (330), Expect = 2e-34
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 9/158 (5%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
+L AAL G ++VV ++ D + + G + LH A + +++ L+ +GA++
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW--G 638
N D+ G T LH A + AL+ + I A + G + + G
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALV---QHGA---AIFATTLSDGATAFEKCDPYREG 134
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676
Y L D + L N V L + + +L
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172
Score = 120 bits (304), Expect = 5e-31
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 10/152 (6%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
++ G T LH A +VD ++ GA+ NS D G +PLH AA+ + + L+ G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 579 ASINLTD-NEGNTALHLATN--NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
A+I T ++G TA G+ C L + ++ +N+ L +
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ------SMGLMNSGAVYALWDYS 164
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ + + + T A
Sbjct: 165 A-EFGDELSFREGESVTVLRRDGPEETDWWWA 195
Score = 118 bits (298), Expect = 3e-30
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 799 NINICNSDGY---TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
+ L A G ++V+ + D + + +T LH A N S
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYS 68
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH-YGQTCLHM 914
IV L+ A NVN+ D G T LH AA N T + L++ GA G T
Sbjct: 69 IVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Query: 915 A 915
Sbjct: 128 C 128
Score = 113 bits (286), Expect = 1e-28
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 5/120 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ + N +G TALH A +Y +V LI A++N TPLH A N+ I
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCNDTVICM 104
Query: 859 LLLAAKQCNVNAQDYR-GNTALHYAAI--NNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
L+ + A G TA + + AT L + N L
Sbjct: 105 ALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Score = 104 bits (262), Expect = 2e-25
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA--CQNNNLSI 856
N+N +S G+T LH A S + L+ + A I T T +
Sbjct: 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC 138
Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
L + ++ + AL + L+ ++ +T A
Sbjct: 139 ATYLA-DVEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVLRRDGPEETDWWWA 195
Score = 101 bits (254), Expect = 2e-24
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 823 VRLLINYRADINIVTRVKQ--LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
+R ++ R + L L A L +V+ + + + + + G TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALH 59
Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
A + ++ L+ +GA + +G T LH A + L
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106
Score = 95.8 bits (239), Expect = 3e-22
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAAT--RGHQNVLLLLL 575
D G+T LH AA + +++ GA + L G + G+ + L
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
S+ L ++ AL + + L + + ++ + + ++ AA
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEFGDE----LSFREGE---SVTVLRRDGPEETDWWWAA 196
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
G + G P ++ +R + ++
Sbjct: 197 LHGQEGYVPRNY-FGLFPRVKPQRSKVKHHHHHH 229
Score = 95.0 bits (237), Expect = 4e-22
Identities = 37/261 (14%), Positives = 63/261 (24%), Gaps = 69/261 (26%)
Query: 573 LLLHSGASINLTDNEGN---TALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
+L S L A G V+ + ++ + + N +G +
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV---KEMN---DPSQPNEEGIT 56
Query: 630 PLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPL 686
LH A SI+ L+ GAN + TPL A N+ + L
Sbjct: 57 ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL---------- 106
Query: 687 YNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746
V + A I + +G
Sbjct: 107 ---------VQ------------------HGAAIFATTLSDGATAFEKC---------DP 130
Query: 747 IENNEIKLIKSYFGLSNEEKVP---DNACHPLCQCAKCKEDVVE-SESRPVTDECLNINI 802
+ E+ + A + L + D + E E + +
Sbjct: 131 YREGYADCAT--YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREG-----ESVTVLR 183
Query: 803 CNSDGYTALHIATSLGHYDLV 823
+ T A G V
Sbjct: 184 RDGPEETDWWWAALHGQEGYV 204
Score = 77.7 bits (192), Expect = 3e-16
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 7/118 (5%)
Query: 799 NINICN-SDGYTALHIATSL--GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
I SDG TA G+ D L + + ++ L
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYSAEFGD- 169
Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
+ V +D T +AA++ G P++K + H
Sbjct: 170 -ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF-GLFPRVKPQRSKVKHH 225
Score = 55.0 bits (133), Expect = 2e-08
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNNLSIV 857
++ + NS AL S D + + ++ R T A + V
Sbjct: 148 SMGLMNSGAVYALWDY-SAEFGDELSFREG--ESVTVLRRDGPEETDWWWAALHGQEGYV 204
Query: 858 RLLLAAKQCNVNAQDYRGNTALH 880
V Q + H
Sbjct: 205 PRNYFGLFPRVKPQRSKVKHHHH 227
Score = 29.5 bits (67), Expect = 3.9
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 643 IQLLLDHGANPTLENKRK---VTPLQNA---NNLHVAKLL 676
++ +L +P + + + L +A L V +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQA 40
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 126 bits (319), Expect = 3e-34
Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 2/122 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
S A G D V+ + D+N PLH A L I+ LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLL- 61
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
K ++NA D T L A H + LLL GA +K G T +L
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Query: 924 VR 925
++
Sbjct: 122 LQ 123
Score = 121 bits (306), Expect = 2e-32
Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
A G + V + G D N G PLHYAA G +L LL GA I
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D T L A GH +CVK L+ + + G + A +
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLL---SKGA---DKTVKGPDGLTAFEATDNQAIKA 120
Query: 642 IIQ 644
++Q
Sbjct: 121 LLQ 123
Score = 117 bits (296), Expect = 4e-31
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
+A G + + + G +N T G LH A + G ++ L+ +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL---LKG 63
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674
+INA + +PL +A G+ S ++LLL GA+ T++ +T + +N +
Sbjct: 64 A---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Query: 675 LL 676
LL
Sbjct: 121 LL 122
Score = 104 bits (263), Expect = 9e-27
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N G LH A G +++ L+ ADIN + TPL A ++S V+
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-TPLLSAVYEGHVSCVK 90
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
LLL+ + + G TA L
Sbjct: 91 LLLSKG-ADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 99.8 bits (250), Expect = 5e-25
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ G LH AA G++++++ +L GAD N+ D +PL A GH + + LLL G
Sbjct: 37 LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 579 ASINLTDNEGNTALHLATNNGHETCVK 605
A + +G TA N + ++
Sbjct: 97 ADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 92.1 bits (230), Expect = 3e-22
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
A +N +L V+ +A +VN G LHYAA + LL GA
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
+ + T L A +S V++L
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLL 92
Score = 84.8 bits (211), Expect = 9e-20
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQ 644
+ + A NG VK + + ++N G PLH AA G I++
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYV---AKGE---DVNRTLEGGRKPLHYAADCGQLEILE 57
Query: 645 LLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
LL GA+ +K +TPL +A ++ KLL
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Score = 58.6 bits (143), Expect = 1e-10
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + D A + G ++ + G + + PL A L + + L
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
Score = 52.0 bits (126), Expect = 3e-08
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ +A N + + G G+ LH A L ++ L
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
Score = 38.5 bits (91), Expect = 0.001
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVR 824
+ + DG TA + L++
Sbjct: 98 DKTVKGPDGLTAFEATDNQAIKALLQ 123
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 125 bits (316), Expect = 6e-34
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
+ DG T LH A GH + V+ L++ AD+N ++ TPLH+A +N + IV+L
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKL 60
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
LLA K +VNA+ GNT H A N H + LL GA ++ H
Sbjct: 61 LLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 116 bits (294), Expect = 5e-31
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
G S+D G +PLH AA GH + LL GA +N +GNT LHLA NGH V
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
K L+ + ++NA + G++P H A + G+ I++LL GA+ +
Sbjct: 59 KLLL---AKGA---DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 114 bits (289), Expect = 3e-30
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
G T LH AA G + V +L GAD N++ G +PLH AA GH ++ LLL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632
A +N +GNT HLA NGH VK L + ++NA + H
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLD---AKGA---DVNARSWGSSHHHH 113
Score = 98.6 bits (247), Expect = 1e-24
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + DG T LH+A GH ++V+LL+ AD+N ++ TP H+A +N + IV+
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVK 92
Query: 859 LLLAAKQCNVNAQDYRGNTALHY 881
LL A +VNA+ + + H+
Sbjct: 93 LLDAKG-ADVNARSWGSSHHHHH 114
Score = 94.0 bits (235), Expect = 5e-23
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH A +N + V+ LL+ K +VNA+ GNT LH AA N H + LLL GA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
++ G T H+A++ +V++L
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 89.0 bits (222), Expect = 3e-21
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
G +GNT LH A NGH VK L+ + ++NA + G++PLH AA+
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLL---SKGA---DVNARSKDGNTPLHLAAKN 52
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
G+ I++LLL GA+ +K TP A + + KLL
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 61.2 bits (150), Expect = 2e-11
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
++D GNT LH AA N H LL GA ++ G T LH+A + +V++
Sbjct: 3 MWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 927 L 927
L
Sbjct: 61 L 61
Score = 53.2 bits (129), Expect = 1e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHY 561
G T H+A G ++V L+ GAD N++ H+
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 125 bits (316), Expect = 4e-33
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLL------ 572
+ + VL R K+ ++ GAD S+ G + G ++
Sbjct: 39 SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98
Query: 573 LLLHSGASINLTDNEGNTALHLATNNGHETCVKAL-IYFNEQEVLNLNINAVNNQGDSPL 631
+ L GA I + N + + +Y L + + G + L
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Query: 632 HAAARWGYTSIIQLLLDHGANPTLENK 658
R ++++ D+ L+
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 113 bits (285), Expect = 5e-29
Identities = 23/174 (13%), Positives = 51/174 (29%), Gaps = 25/174 (14%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGAD---TNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
+ + AA+ G + + E G + + + L + + L++ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL------NINAVNNQGDSPLH 632
A I EG T G E+ + +I A+ +
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTT------ELCKIFLEKGADITALYKPYKIVVF 119
Query: 633 AAARWGYTS------IIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ + +L+ G +++K +T L+ K++
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Score = 111 bits (279), Expect = 4e-28
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 799 NINICNSDGYTALHIATSLGHYD------LVRLLINYRADINIVTRVKQLTPLHIACQNN 852
+I +G T G D L ++ + ADI + + + + N
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK-IVVFKNIFNY 125
Query: 853 NLS------IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
+ + +L+ + + +D G TAL + ++ + +K
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 108 bits (271), Expect = 3e-27
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 13/145 (8%)
Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
E + ++ Y L Y + LIN ADI T+ T Q
Sbjct: 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGT-TLFFPLFQGGGN 88
Query: 855 SIVRLLLAAKQ-----CNVNAQDYRGNTALHYAAINNHTNLA-------TLLLKSGARPQ 902
I K ++ A + N + + +SG +
Sbjct: 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
IK+ +G T L ++ ++++
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMM 173
Score = 92.8 bits (231), Expect = 9e-22
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 9/118 (7%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL--TPLHIACQNNNLSIVRLLLAA 863
Y + A LG Y+ L + + L I L+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTN------LATLLLKSGARPQIKNHYGQTCLHMA 915
++ ++ G T + L + L+ GA + +
Sbjct: 65 G-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Score = 58.1 bits (141), Expect = 9e-10
Identities = 11/85 (12%), Positives = 19/85 (22%), Gaps = 11/85 (12%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW----GYTSI 642
+ A G L + + + L+ R I
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELF-------EKGYEDKESVLKSNILYDVLRNNNDEARYKI 57
Query: 643 IQLLLDHGANPTLENKRKVTPLQNA 667
L++ GA+ K T
Sbjct: 58 SMFLINKGADIKSRTKEGTTLFFPL 82
Score = 33.5 bits (77), Expect = 0.15
Identities = 8/62 (12%), Positives = 13/62 (20%), Gaps = 5/62 (8%)
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH---YGQTCLHMAQQMTSLSLVR 925
NA + AA+ L + G + L +
Sbjct: 2 NAMS--EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59
Query: 926 VL 927
L
Sbjct: 60 FL 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 130 bits (327), Expect = 1e-32
Identities = 59/437 (13%), Positives = 108/437 (24%), Gaps = 90/437 (20%)
Query: 435 MSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPL 494
+D +L + + N + L + + L E L +
Sbjct: 13 ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY-- 70
Query: 495 CSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLV---LELGADTNSQ 551
N Q + + VAA+ G +D + L
Sbjct: 71 ------YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124
Query: 552 DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD--NEGNTALHLATNNGHETCVKALIY 609
AA GH +VL L + + E A LA NGH + L
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC- 183
Query: 610 FNEQEVLNLNINAVNNQGDSPLH-AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
+ + + AA G+ ++I LLD
Sbjct: 184 ---ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML------------AYA 228
Query: 669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG 728
+H + YV+ ++ + + +N V
Sbjct: 229 EIHEFEYGEKYVNP------FIARHVNRLKE-----------MHDAFKLSNPDGV----- 266
Query: 729 VRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVES 788
F L+ +E L + + E +++
Sbjct: 267 ---------------FDLVTK-------------SECLQGFYMLRNLIR--RNDEVLLDD 296
Query: 789 ----ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTP 844
S P D L +A LG+ LL++ + + + +
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL----TKANN 352
Query: 845 LHIACQNNNLSIVRLLL 861
+I L + + L
Sbjct: 353 YYINETGGRLDLRAVAL 369
Score = 94.6 bits (235), Expect = 8e-21
Identities = 24/185 (12%), Positives = 57/185 (30%), Gaps = 11/185 (5%)
Query: 737 IKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKE--DVVESESRPVT 794
+++V QL L + + K + ++++ + + C D + +
Sbjct: 60 MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL----LL 115
Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNN 853
+ + ++ Y A +A GH ++ L + + +A +N +
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175
Query: 854 LSIVRLLLAAKQCNVNAQDYR--GNTALHYAAINN-HTNLATLLLKSGARPQIKNHYGQT 910
L ++ L + A +AA+ H N+ LL +
Sbjct: 176 LHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 234
Query: 911 CLHMA 915
Sbjct: 235 YGEKY 239
Score = 75.4 bits (185), Expect = 1e-14
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 28/136 (20%)
Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL--------LHS 577
++ G +V S+ L G L R + +L + + +
Sbjct: 258 FKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS-PLHAAAR 636
A + N L LA G++ L+ +I +V + +
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLL----------SIPSVLALTKANNYYINET 358
Query: 637 WGYTSIIQLLLDHGAN 652
G + + L+H +
Sbjct: 359 GGRLDLRAVALEHHHH 374
Score = 64.2 bits (156), Expect = 6e-11
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 20/131 (15%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN---LSIVRLL 860
+ + A ++ G +DLV ++ L + N+ L +R L
Sbjct: 251 LKEMHDAFKLSNPDGVFDLV----------TKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300
Query: 861 LAAKQ----CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
L+ N L A + LLL + + ++ +
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINE 357
Query: 917 QMTSLSLVRVL 927
L L V
Sbjct: 358 TGGRLDLRAVA 368
Score = 63.8 bits (155), Expect = 9e-11
Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 13/105 (12%)
Query: 806 DGYTALHIATSLGHYDLVRLL--------INYRADINIVTRVKQLTPLHIACQNNNLSIV 857
G+ L L+ + I A + L +A + N
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGAC 335
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
LLL+ + + +L + L+
Sbjct: 336 ALLLSIPSVLALTK----ANNYYINETGGRLDLRAVALEHHHHHH 376
Score = 56.1 bits (135), Expect = 2e-08
Identities = 12/129 (9%), Positives = 33/129 (25%), Gaps = 22/129 (17%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
I + Y A GH++++ L++ + + +
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI--------HEFEYGEKYVNP 242
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+ + + A + + +L T + + G L +
Sbjct: 243 FI-----ARHVNRLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRR 288
Query: 919 TSLSLVRVL 927
L+ +
Sbjct: 289 NDEVLLDDI 297
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 124 bits (314), Expect = 2e-32
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 522 GFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
+ L +AA ++ + L+ G + + + G + LH AA + ++L+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 581 I-----NLTDNEGNTALHLATNNGHETCVKALI-------YFNEQEVLNLNINAVNNQGD 628
+ EG TALH+A N + V+AL+ V + + + G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 629 SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
PL AA G I++LL++HGA+ ++ T L N A +
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173
Score = 123 bits (312), Expect = 5e-32
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 37/189 (19%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGAD-----TNSQDLCGCSPLHYAATRGHQNVLLL 573
G T LH+AALY ++ +++E + S+ G + LH A + N++
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 574 LLHSGASINLTDN-------------EGNTALHLATNNGHETCVKALIYFNEQEVLNLNI 620
LL GAS++ G L A G E V+ LI E +I
Sbjct: 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI---EHGA---DI 147
Query: 621 NAVNNQGDSPLHAAARWGYTSI----IQLLLDHGAN------PTLENKRKVTPLQNA--- 667
A ++ G++ LH + LLL + + N + +TP + A
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207
Query: 668 NNLHVAKLL 676
N+ + + L
Sbjct: 208 GNIVMFQHL 216
Score = 121 bits (305), Expect = 4e-31
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 27/162 (16%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-------------LCGCSPLHYAATR 565
G T LH+A + + +V +L GA +++ G PL +AA
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL---NLNINA 622
G + ++ LL+ GA I D+ GNT LH+ ++T + +L + +
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY-----NLLLSYDGGDHL 186
Query: 623 ------VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
NNQG +P A G + Q L+ + +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 116 bits (293), Expect = 2e-29
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR----VKQLTPLHIACQNNNL 854
++ + G TALHIA + + +L+ ++ + T LHIA N N+
Sbjct: 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88
Query: 855 SIVRLLLAAKQCNVNAQD-------------YRGNTALHYAAINNHTNLATLLLKSGARP 901
++VR LLA +V+A+ Y G L +AA + LL++ GA
Sbjct: 89 NLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
Query: 902 QIKNHYGQTCLHMA 915
+ ++ G T LH+
Sbjct: 148 RAQDSLGNTVLHIL 161
Score = 116 bits (292), Expect = 2e-29
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 23/151 (15%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL------------TPLH 846
+ +G TALHIA + +LVR L+ A ++ PL
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT----LLLKSGA--- 899
A + IVRLL+ ++ AQD GNT LH + + A LLL
Sbjct: 127 FAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 900 ---RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ N+ G T +A ++ + + L
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216
Score = 110 bits (276), Expect = 3e-27
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 807 GYTALHIATSLGHYDLV-RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA-- 863
+ L +A + +LL +++ + + T LHIA +NL +L+ A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAP 61
Query: 864 --KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA-------------RPQIKNHYG 908
+ ++ Y G TALH A IN + NL LL GA RP +YG
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 909 QTCLHMAQQMTSLSLVRVL 927
+ L A + S +VR+L
Sbjct: 122 EHPLSFAACVGSEEIVRLL 140
Score = 104 bits (262), Expect = 2e-25
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
+ G L A +G ++VRLLI + ADI + T LHI N +
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTF 169
Query: 857 VRL---LLAAKQCNVNA------QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY 907
LL + + + +G T A + + + L++ +H+
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHH 229
Query: 908 GQ 909
Sbjct: 230 HH 231
Score = 94.6 bits (236), Expect = 6e-22
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
S ++ G L AA G ++V L++E GAD +QD G + LH +
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165
Query: 567 HQNVLL----LLLHSGASIN------LTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
++ LLL + + +N+G T LA G+ + L+ ++
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM---QKRK- 221
Query: 617 NLNINAVNNQG 627
+I A ++
Sbjct: 222 --HIAAAHHHH 230
Score = 65.7 bits (161), Expect = 6e-12
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL----GADTN------SQDLCGCSPLHYAATRGHQ 568
D G TVLH+ L + L + + G +P A G+
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210
Query: 569 NVLLLLLHSGASINLTDNEGN 589
+ L+ I + +
Sbjct: 211 VMFQHLMQKRKHIAAAHHHHH 231
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 121 bits (306), Expect = 2e-32
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 799 NINICN-SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
+ + + SD L A G D VR+L+ AD+N TPL++A + +L IV
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEIV 63
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
+LL +VNA D G T LH AA H +A +LLK GA ++ +G+T ++
Sbjct: 64 EVLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 918 MTSLSLVRVL 927
+ L +L
Sbjct: 123 NGNEDLAEIL 132
Score = 116 bits (294), Expect = 9e-31
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
L AA G+ V +++ GAD N++D G +PL+ A GH ++ +LL +GA +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D G T LHLA GH + L+ + ++NA + G + + G
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLL---KHGA---DVNAQDKFGKTAFDISIGNGNED 127
Query: 642 IIQLLLDH 649
+ ++L
Sbjct: 128 LAEILQKL 135
Score = 111 bits (281), Expect = 5e-29
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 545 GADTN-SQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC 603
G+ + L AA G + + +L+ +GA +N D G T L+LAT +GH
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
V+ L+ + ++NAV+ G +PLH AA G+ I ++LL HGA+ ++K T
Sbjct: 63 VEVLL---KNGA---DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 664 LQNA---NNLHVAKLL 676
+ N +A++L
Sbjct: 117 FDISIGNGNEDLAEIL 132
Score = 108 bits (272), Expect = 8e-28
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + G T L++AT+ GH ++V +L+ AD+N V + TPLH+A +L I
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF-TPLHLAAFIGHLEIAE 97
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
+LL +VNAQD G TA + N + +LA +L K
Sbjct: 98 VLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 99.0 bits (248), Expect = 2e-24
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D+ G T L++A +G +++V+++L+ GAD N+ D G +PLH AA GH + +LL G
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
A +N D G TA ++ NG+E + L
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 42.8 bits (102), Expect = 7e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
++N + G TA I+ G+ DL +L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 28.5 bits (65), Expect = 5.4
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE 543
D G T ++ G + +++ +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 123 bits (310), Expect = 7e-32
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D T LH A G ++V+ +L+LG N +D G SPLH AA+ G ++ LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A +N + G T LH A + L+ N +A ++ + +H AA G
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYDATAMHRAAAKG 150
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
++ +LL + A+ +++ TPL A + AK L
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 123 bits (309), Expect = 9e-32
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
+ ++A ++ + +L + D + LH+A + GH ++ LL G +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
N D+ G + LH+A + G + VKAL+ ++NAVN G +PLH AA
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGA------HVNAVNQNGCTPLHYAASKNRHE 120
Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
I +LL+ GANP ++ T + A NL + +L
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Score = 119 bits (301), Expect = 1e-30
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
DD G++ LH+AA G ++V +L GA N+ + GC+PLHYAA++ + ++LL G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A+ + D+ TA+H A G+ V L+++ + N + +G++PLH A
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA-NNLHVAKLL 676
+ L+ GA+ +ENK + TPLQ A L +
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222
Score = 115 bits (289), Expect = 5e-29
Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 2/124 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
++A S +L ++ ++ + T LH AC + IV LL
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQL 62
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
VN +D G + LH AA + LL GA N G T LH A +
Sbjct: 63 G-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 924 VRVL 927
+L
Sbjct: 122 AVML 125
Score = 114 bits (286), Expect = 1e-28
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+ D TALH A S GH ++V L+ +N +PLHIA IV+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVK 90
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
LL K +VNA + G T LHYAA N +A +LL+ GA P K+HY T +H A
Sbjct: 91 ALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 919 TSLSLVRVL 927
+L +V +L
Sbjct: 150 GNLKMVHIL 158
Score = 111 bits (279), Expect = 9e-28
Identities = 47/284 (16%), Positives = 91/284 (32%), Gaps = 62/284 (21%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
+ A + + +L + TD + TALH A + GH V+ L+ +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLG 63
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
V +N ++ G SPLH AA G I++ LL GA+ N+ TPL A N
Sbjct: 64 V---PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 672 VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRP 731
+A +L ++ + +
Sbjct: 121 IAVMLLEGG--------------------------------ANPDAKD------HYDATA 142
Query: 732 RNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESR 791
+ K ++ ++ S + + C + + + +
Sbjct: 143 MHRAAAKGNLKMVHILLFY---------KASTNIQDTEGNTPLHLACDEERVEEAKF--- 190
Query: 792 PVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINI 835
+ + +I I N + T L +A G L+ + + ++
Sbjct: 191 -LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 102 bits (255), Expect = 2e-24
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
+++ G T LH AA R ++ ++LE GA+ +++D + +H AA +G+ ++ +LL
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
AS N+ D EGNT LHLA + K L+ +I N + +PL A
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA------SIYIENKEEKTPLQVAK 213
Query: 636 RWGYTSIIQLLLDHGANP 653
G +I L G
Sbjct: 214 --GGLGLILKRLAEGEEA 229
Score = 98.4 bits (245), Expect = 4e-23
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+N + G++ LHIA S G ++V+ L+ A +N V + TPLH A N I
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAV 123
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
+LL N +A+D+ TA+H AA + + +LL A I++ G T LH+A
Sbjct: 124 MLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 919 TSLSLVRVL 927
+ + L
Sbjct: 183 ERVEEAKFL 191
Score = 88.4 bits (219), Expect = 8e-20
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N N +G T LH A S +++ +L+ A+ + T +H A NL +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVH 156
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
+LL + + N QD GNT LH A A L+ GA I+N +T L +A+
Sbjct: 157 ILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 72.6 bits (178), Expect = 2e-14
Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 40/249 (16%)
Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL---N 677
+ A + + +L + T ++ T L A + + + L
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKY----LDY-SDVNEANISNVNVREGVRPR 732
V+ +D L + I + +G
Sbjct: 64 VPVND-----------------------KDDAGWSPLHIAASAGXDEIVKALLVKGAHV- 99
Query: 733 NITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP 792
N L N ++ D+ A K ++
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI-- 157
Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
+ + NI +++G T LH+A + + L+ A I I + ++ TPL +A
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKGGL 216
Query: 853 NLSIVRLLL 861
++ L
Sbjct: 217 G--LILKRL 223
Score = 54.9 bits (132), Expect = 2e-08
Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Query: 450 NYKKISSLTKLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINL 506
N + T L A + +L+ + K+ ++ + + + +++
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH--RAAAKGNLKMVHI 157
Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
+T D G T LH+A R++ ++ GA ++ +PL A G
Sbjct: 158 LLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--G 214
Query: 567 HQNVLLLLLHSGASINL 583
++L L G ++
Sbjct: 215 GLGLILKRLAEGEEASM 231
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 119 bits (300), Expect = 3e-30
Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL------------TPLH 846
G++ALHIA V+LL+ AD+++ + PL
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141
Query: 847 IACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAI----------------NNHT 888
+A +V LL + ++ A D GNT LH + +
Sbjct: 142 LAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL 201
Query: 889 NLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+ L + +I NH G T L +A + + + R +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Score = 115 bits (290), Expect = 6e-29
Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 42/177 (23%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-------------LCGCSPLHYAATR 565
+G + LH+A ++ V L++E GAD + + G PL AA
Sbjct: 87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146
Query: 566 GHQNVLLLLL---HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
+V+ LL H AS+ TD+ GNT LH
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD---------------------- 184
Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
N+ +S L G + L + N + +TPL+ A + + + +
Sbjct: 185 -NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Score = 104 bits (260), Expect = 6e-25
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 30/162 (18%)
Query: 783 EDVVESESRPVTDECLNINICNSDGYTALHIA---TSLGHYDLVRLLINYRADINIVTRV 839
++E + S G T L A G + L+ D +
Sbjct: 19 TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78
Query: 840 KQ----------LTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-------------YRGN 876
+ LHIA + +L V+LL+ +V+ + Y G
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGE 137
Query: 877 TALHYAAINNHTNLATLLLKSG---ARPQIKNHYGQTCLHMA 915
L AA ++ T LL++ A + + G T LH
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179
Score = 94.5 bits (235), Expect = 1e-21
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 19/130 (14%)
Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLI---NYRADINIVTR--------------- 838
+ C G L +A +D+V L+ + A +
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185
Query: 839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
+ + L I + L + L +++G T L AA + +L+
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Query: 899 ARPQIKNHYG 908
+H+
Sbjct: 245 FSGAAAHHHH 254
Score = 86.8 bits (215), Expect = 6e-19
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 25/141 (17%)
Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELG---ADTNSQDLCGCSPLHYAA 563
+ + G L +AA + VV +LE A + D G + LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 564 T----------------RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
G + L + +++++G T L LA G + +
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Query: 608 IYFNEQEVLNLNINAVNNQGD 628
+ ++E + A ++
Sbjct: 241 L---QREF---SGAAAHHHHH 255
Score = 79.1 bits (195), Expect = 2e-16
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 33/152 (21%)
Query: 809 TALHIATSLGHYDLVRLLINY------RADINIVTRVKQ-LTPLHIA---CQNNNLSIVR 858
L S G + + L+ Y + T T L A Q+ + +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 859 LLLAA----------KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA--------- 899
LL + Y+G++ALH A LL+++GA
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 900 ----RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
++G+ L +A +V L
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Score = 46.3 bits (110), Expect = 2e-05
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 588 GNTALHLATNNGHETCVKALIYF--NEQEVLNLNINAVNNQGDSPLHAAA---RWGYTSI 642
L + G + L+ + + L + + G + L A + G +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 643 IQLLLDHG-----------ANPTLENKRKVTPLQNA---NNLHVAKLL 676
I LL A T E + + L A +L KLL
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 119 bits (300), Expect = 4e-30
Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD--------------LCGCSPLHYAAT 564
+G T LH+A + +V L++E GAD + G PL AA
Sbjct: 98 YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157
Query: 565 RGHQNVLLLLLHSG---ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL--- 618
++ LL + A I+ D+ GNT LH T + + +
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217
Query: 619 -------NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
N +G +PL AA G ++ +L + + A
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAA 266
Score = 111 bits (280), Expect = 2e-27
Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 50/205 (24%)
Query: 519 DDRGFTVLHVAAL---YGRIKVVDLVLELGADT-----------NSQDLCGCSPLHYAAT 564
+ G T L A L G+ + L+L++ T G + LH A
Sbjct: 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110
Query: 565 RGHQNVLLLLLHSGASINLTDNE--------------GNTALHLATNNGHETCVKALIYF 610
R + ++ LL+ +GA + N G L LA VK L+
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL-- 168
Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWG---------YTSIIQLLLDHGAN-------PT 654
+ +I+A ++ G++ LHA TS+ +L GA
Sbjct: 169 -QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227
Query: 655 LENKRKVTPLQNA---NNLHVAKLL 676
+ N++ +TPL A + V +
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYI 252
Score = 102 bits (256), Expect = 3e-24
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 799 NINICNSD-GYTALHIAT---SLGHYDLVRLLINYRADINIVTRV----------KQLTP 844
+ + + G T L A G D + LL++ + + + K T
Sbjct: 45 DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA 104
Query: 845 LHIACQNNNLSIVRLLLAAKQCNVNAQD--------------YRGNTALHYAAINNHTNL 890
LHIA + N+++V LL+ +V A Y G L AA N +
Sbjct: 105 LHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163
Query: 891 ATLLLKSG---ARPQIKNHYGQTCLHMA 915
LL++ A ++ G T LH
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHAL 191
Score = 94.1 bits (234), Expect = 3e-21
Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 26/135 (19%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNNLS 855
G L +A +V+ L+ ADI+ V T LH + + +
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNT 198
Query: 856 IVRLLLAAKQCN---------------VNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
+ N + +G T L AA + + +L+
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI- 257
Query: 901 PQIKNHYGQTCLHMA 915
+ C H A
Sbjct: 258 ------HEPECRHAA 266
Score = 88.7 bits (220), Expect = 1e-19
Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 544 LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS-------GASINLTDNE-GNTALHLA 595
+ A L + A + + L LL D E G T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 596 T---NNGHETCVKALIYF-----NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
+NG + L+ + ++ +N + +G + LH A +++ LL+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 648 DHGAN--------------PTLENKRKVTPLQNA---NNLHVAKLL 676
++GA+ PL A N L + K L
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167
Score = 88.3 bits (219), Expect = 2e-19
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 32/140 (22%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELG---ADTNSQDLCGCSPLHYAATRGHQNV----- 570
G L +AA ++ +V +L+ AD +++D G + LH V
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204
Query: 571 ------LLL-----LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLN 619
+L L + +T+ +G T L LA ++G + ++ ++E+
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL---QREI---- 257
Query: 620 INAVNNQGDSPLHAAARWGY 639
HAAA +
Sbjct: 258 ------HEPECRHAAAHHHH 271
Score = 87.9 bits (218), Expect = 3e-19
Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 34/163 (20%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-------ADINIVTRVKQLTPLHIA--- 848
++ A + + + L+ + D T L A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 849 CQNNNLSIVRLLLAAKQ----------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
N + LLL + + Y+G TALH A + L TLL+++G
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Query: 899 A--------------RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
A + + ++G+ L +A L++V+ L
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167
Score = 82.1 bits (203), Expect = 2e-17
Identities = 40/303 (13%), Positives = 87/303 (28%), Gaps = 66/303 (21%)
Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLD-------HGANPTL-ENKRKVTPLQNANNL 670
+ A ++ LL + + + T L
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCL------ 58
Query: 671 HVAKLLNAYVHK--PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG 728
A L L + + + + + T Y + ++ A I N+
Sbjct: 59 LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA-IERRNM--- 114
Query: 729 VRPRNITEIKKVEQLFALIENN---EIKLIKSYFGLSNEEKVPDNACHPLCQCAKC-KED 784
+ + L+EN + +F + PL A +
Sbjct: 115 ----TLVTL--------LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 785 VVE---SESRPVTDECLNINICNSDGYTALHIATSLGHYDLVR---------LLINYRAD 832
+V+ S D I+ +S G T LH + + ++ A
Sbjct: 163 IVKFLLQNSWQPAD----ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218
Query: 833 INIVTRVKQ------LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
++ ++++ LTPL +A + + ++ +L ++ H AA ++
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHH 270
Query: 887 HTN 889
H +
Sbjct: 271 HHH 273
Score = 67.9 bits (166), Expect = 2e-12
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 519 DDRGFTVLHVAALYGR---------IKVVDLVLELGADTNSQ-------DLCGCSPLHYA 562
D G TVLH + + +L LGA + + G +PL A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE 601
A+ G VL +L H A ++ H
Sbjct: 241 ASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272
Score = 56.7 bits (137), Expect = 9e-09
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
+ +G T L +AA G+I V+ +L+ H AA H +
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHHHH 273
Score = 37.5 bits (87), Expect = 0.014
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 8/58 (13%)
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLL-------KSGARPQIK-NHYGQTCLHMA 915
++ A ++ LL K + K G+TCL A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF,
GTPase, VPS9, nucleotide, transport protein; HET: GNH;
2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Length = 267
Score = 117 bits (295), Expect = 1e-29
Identities = 45/268 (16%), Positives = 104/268 (38%), Gaps = 17/268 (6%)
Query: 158 ASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQ 217
S+ N D L E K ++IK F+++ +P +K +V++ +
Sbjct: 1 GSMENTDVFLGLHDFL--ERMRKPSAGDFVKSIKSFIVSFSNNAPDP-EKDCAMVQEFFS 57
Query: 218 NCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKM 277
++ +DS +E Y+ ++ + T ++ F KM
Sbjct: 58 KMEAAFRAHPLWS---GCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKM 114
Query: 278 IRNLSDIQLKDLDIREDLYD--TVPRARSEISHIDCYSTILGKIGCVRRCISAISK--ED 333
I ++LDI+ + + A+ E+ I+ Y K+ C+ C I+ +
Sbjct: 115 SLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLN 174
Query: 334 TRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS 393
N D+ LP+++++ +K P ++L Y++++ + + + ++ T+
Sbjct: 175 ASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR---ESKLVGEAAYFFTN 231
Query: 394 LEASIEHIK----SGLLIGPSEPEALMS 417
+ ++ I + + +E E M
Sbjct: 232 ILSAESFISNIDAKSISLDEAEFEKNME 259
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 110 bits (278), Expect = 4e-29
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
+G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+LLL A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
+VNA+D G T LH AA N H + LLL++GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 107 bits (271), Expect = 3e-28
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
G +PLH AA GH V+ LLL +GA +N D G T LHLA NGH VK L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
++NA + G +PLH AAR G+ +++LLL+ GA
Sbjct: 59 A---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 103 bits (260), Expect = 9e-27
Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALI 608
N D G T LHLA NGH VK L+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 94.0 bits (235), Expect = 2e-23
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
TPLH+A +N +L +V+LLL +VNA+D G T LH AA N H + LLL++GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
K+ G+T LH+A + L +V++L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 83.2 bits (207), Expect = 2e-19
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
G T LHLA NGH VK L+ E ++NA + G +PLH AAR G+ +++LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL---EAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 648 DHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
+ GA+ ++K TPL A +L V KLL
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 77.4 bits (192), Expect = 2e-17
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++N + +G T LH+A GH ++V+LL+ AD+N + + TPLH+A +N +L +V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85
Query: 859 LLLAA 863
LLL A
Sbjct: 86 LLLEA 90
Score = 65.8 bits (162), Expect = 2e-13
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
D G T LH+AA G ++VV L+LE GAD N++D G +PLH AA GH V+ LLL +G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 579 A 579
A
Sbjct: 92 A 92
Score = 56.6 bits (138), Expect = 4e-10
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G T LH AA N H + LLL++GA K+ G+T LH+A + L +V++L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 45.8 bits (110), Expect = 2e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
++N + +G T LH+A GH ++V+LL+ A
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular
traffic, protein transport; 2.10A {Homo sapiens} SCOP:
a.222.1.1 PDB: 1txu_A
Length = 274
Score = 114 bits (287), Expect = 2e-28
Identities = 48/274 (17%), Positives = 108/274 (39%), Gaps = 22/274 (8%)
Query: 153 ENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLV 212
+ + SI + ++ I+ L + +++ + K+FL ++Q
Sbjct: 3 HHHHHHSIETDRVSKEFIEFL---KTFHKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECA 59
Query: 213 EKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDA 272
+ Y N +++ + ++ I +E Y+ +YK + T +D
Sbjct: 60 QDFYHNVAE------RMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDL 113
Query: 273 QFNKMIRNLSDIQLKDLDIREDLY-----DTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
K IR L + + L + + D V +A ++I +D K+ C+ +C
Sbjct: 114 AIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK 173
Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
I + + + DD LP ++++V+K P +++ Y+ +F S + +D
Sbjct: 174 HIF--NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCN--PSRLMTGED 229
Query: 388 SFLITSLEASIEHIK----SGLLIGPSEPEALMS 417
+ T+L ++ I+ L + + + MS
Sbjct: 230 GYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS 263
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 112 bits (281), Expect = 9e-28
Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)
Query: 474 AILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533
A+L + D+ + L + E IN + + RG T LH+A
Sbjct: 53 ALLNLSAGRNDTIPI-LLDIAEKTGNMREFINSP-------FRDVYYRGQTALHIAIERR 104
Query: 534 RIKVVDLVLELGADTNSQD--------------LCGCSPLHYAATRGHQNVLLLLL---H 576
V+L++E GAD ++Q G PL AA +++ L H
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL---NINA-------VNNQ 626
A + D+ GNT LH T ++L + + +NN
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224
Query: 627 GDSPLHAAARWGYTSIIQLLLDHGAN 652
G SPL AA+ G I Q ++
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 109 bits (273), Expect = 1e-26
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 31/160 (19%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-------------TPL 845
G TALHIA V LL+ AD++ R + PL
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 846 HIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAINNH---------TNLATLL 894
+A N IV L KQ ++ QD RGNT LH T + LL
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204
Query: 895 LKSGAR-------PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
L A+ + N+ G + L MA + + + + +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 108 bits (272), Expect = 2e-26
Identities = 39/205 (19%), Positives = 65/205 (31%), Gaps = 50/205 (24%)
Query: 519 DDRGFTVLHVAAL---YGRIKVVDLVLELGADT-----------NSQDLCGCSPLHYAAT 564
G T L A L GR + ++L++ T G + LH A
Sbjct: 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102
Query: 565 RGHQNVLLLLLHSGASINLTDN--------------EGNTALHLATNNGHETCVKALIYF 610
R ++ + LL+ GA ++ G L LA V L
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-- 160
Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWG---------YTSIIQLLLDHGAN-------PT 654
E ++ +++G++ LHA T + LLL A
Sbjct: 161 -ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219
Query: 655 LENKRKVTPLQNA---NNLHVAKLL 676
L N ++PL A + + + +
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 86.8 bits (215), Expect = 6e-19
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 33/152 (21%)
Query: 558 PLHYAATRG----HQNVLLLLLHSGASINLTD----NEGNTALHLATNN---GHETCVKA 606
L +RG + +L LL + + + G T L A N G +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 607 LIYF-----NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKV 661
L+ N +E +N V +G + LH A ++LL++ GA+ + + +
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 662 --------------TPLQNA---NNLHVAKLL 676
PL A N H+ L
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Score = 84.4 bits (209), Expect = 4e-18
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 30/150 (20%)
Query: 808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---LTPLHIACQNNN---LSIVRLLL 861
+ + + G L+ L+ ++ + + T L A N + + +LL
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69
Query: 862 AAKQC----------NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN------ 905
+ YRG TALH A + LL++ GA +
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129
Query: 906 --------HYGQTCLHMAQQMTSLSLVRVL 927
++G+ L +A +V L
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Score = 77.9 bits (192), Expect = 6e-16
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 19/129 (14%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNN-- 853
+ G L +A +V L +AD+ T LH +
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN-TVLHALVAIADNT 190
Query: 854 -------LSIVRLLLA------AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
+ LLL + G + L AA + +++
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Query: 901 PQIKNHYGQ 909
+H+
Sbjct: 251 DAAAHHHHH 259
Score = 54.8 bits (132), Expect = 4e-08
Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 519 DDRGFTVLHVAALYG---------RIKVVDLVLELGADTNS-------QDLCGCSPLHYA 562
D RG TVLH K+ DL+L A + G SPL A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232
Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALH 593
A G + ++ + D + H
Sbjct: 233 AKTGKIGIFQHIIRREIA----DAAAHHHHH 259
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 104 bits (263), Expect = 6e-27
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
+S H+ L+ + + L A + VR+L+A +V A+D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDK 55
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
G+T LH AA N H + LLL++GA ++ +G+T ++ + L +L
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 101 bits (253), Expect = 1e-25
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
+ + ++ G+ S L AA G + + +L+ +GA + D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
+T LHLA NGH VK L+ E ++ A + G + + G + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLL---EAGA---DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 98.0 bits (245), Expect = 2e-24
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
++ H + L+ G+ + ++ L A G + V+ L+ ++
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILM---ANGA---DVA 51
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
A + G +PLH AAR G+ +++LLL+ GA+ ++K T + N +A++L
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 92.6 bits (231), Expect = 1e-22
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
SD L A G D VR+L+ AD+ + TPLH+A +N +L +V+LLL
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLL-E 78
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
+V AQD G TA + N + +LA +L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 90.7 bits (226), Expect = 5e-22
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
L AA G+ V +++ GAD ++D G +PLH AA GH V+ LLL +G
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKAL 607
A + D G TA ++ +NG+E + L
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 64.1 bits (157), Expect = 1e-12
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
++ + +G T LH+A GH ++V+LL+ AD+ + + T I+ N N +
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDLAE 107
Query: 859 LL 860
+L
Sbjct: 108 IL 109
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 110 bits (277), Expect = 1e-26
Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)
Query: 519 DDRGFTVLHVAALYGRIK----VVDLVLELGADTNSQDLCGCSPLHYAATRGH------- 567
D+ G + L A L+ L +D + LH+
Sbjct: 161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 220
Query: 568 -----QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
++ ++ + + N + + + + + ++ +NA
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL--DLKWIIANMLNA 278
Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
++ GD+ L+ AAR G SI+ LLD+GA+P + NK + P+
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 106 bits (266), Expect = 4e-25
Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 39/320 (12%)
Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL-H 593
+K++ + + N Q + + L Q + L + ++ N N H
Sbjct: 43 LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102
Query: 594 LATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
++ ++ + A LN+N V+ G++PLH +++ L+ HG+N
Sbjct: 103 VSFDSLLQEVNDAFP------NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156
Query: 653 PTLENKRKVTPLQNANNLHVAKLLNAYVHKPKP-LYNYLVPKEKVSRPPSPPPTQDKYLD 711
+ + L A K +N Y L +YL
Sbjct: 157 RLYGDNMGESCLVKA-----VKSVNNYDSGTFEALLDYL--------------------- 190
Query: 712 YSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNA 771
Y + + N + + + ++ ++K + +
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMT-GCSAAAKYYLDILMGWIVKK--QNRPIQSGTNEK 247
Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
++D + +N +S+G T L+IA LG+ +V L++Y A
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
Query: 832 DINIVTRVKQLTPLHIACQN 851
D I + L P+
Sbjct: 308 DPFIANK-SGLRPVDFGAGL 326
Score = 94.3 bits (234), Expect = 4e-21
Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 21/198 (10%)
Query: 499 DCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCS 557
+ +E ++ S HV+ +V D + N D G +
Sbjct: 74 EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133
Query: 558 PLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA---TNNGHETCVKALIYFNEQE 614
PLH+ + + ++ L+ G++ DN G + L A NN +AL+ +
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL-----D 188
Query: 615 VLNLNINAVNNQGDSPLH------------AAARWGYTSIIQLLLDHGANPTLENKRKVT 662
L + ++ + LH AAA++ ++ ++ P +
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 663 PLQNANNLHVAKLLNAYV 680
N N + +
Sbjct: 249 SKPNDKNGERKDSILENL 266
Score = 94.3 bits (234), Expect = 5e-21
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 14/134 (10%)
Query: 799 NINICNSDGYTALHIATSLGHYD------------LVRLLINYRADINIVTRVKQLTPLH 846
+ + +S T LH L+ ++ + ++ + +
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252
Query: 847 IACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904
SI+ L +NAQD G+T L+ AA + ++ LL GA P I
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312
Query: 905 NHYGQTCLHMAQQM 918
N G + +
Sbjct: 313 NKSGLRPVDFGAGL 326
Score = 92.0 bits (228), Expect = 3e-20
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 798 LNINIC-NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN--- 853
LN+NI + G T LH TS+ + +LV+ L+ + ++ + L A ++ N
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYD 179
Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN------------LATLLLKSGARP 901
LL + +D T LH+ I + L ++K RP
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239
Query: 902 QIKNHYGQTCLHMA 915
+
Sbjct: 240 IQSGTNEKESKPND 253
Score = 80.8 bits (199), Expect = 2e-16
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 22/133 (16%)
Query: 519 DDRGFTVLHVAALYGRIK------------VVDLVLELGADTNSQDLCGCSPLHYAATRG 566
D T+LH + + ++ +++
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257
Query: 567 HQN----VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
++ L L +N D+ G+T L++A G+ + V AL+ +
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD------YGADPFI 311
Query: 623 VNNQGDSPLHAAA 635
N G P+ A
Sbjct: 312 ANKSGLRPVDFGA 324
Score = 76.6 bits (188), Expect = 5e-15
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 2/113 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
L ++ L N ++ N H++ + +
Sbjct: 60 KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119
Query: 864 KQCNVNAQ-DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
+ N+N D GNT LH+ + L L+K G+ ++ G++CL A
Sbjct: 120 Q-LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Score = 72.4 bits (177), Expect = 1e-13
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 20/148 (13%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVR----LLINYRADINIVTRVKQLTPLHIACQNNN- 853
N ++ G + L A + LL + + + + T LH +
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR-TILHHIIITSGM 214
Query: 854 ----------LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ- 902
L I+ + KQ + + L
Sbjct: 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274
Query: 903 ---IKNHYGQTCLHMAQQMTSLSLVRVL 927
++ G TCL++A ++ ++S+V L
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDAL 302
Score = 67.7 bits (165), Expect = 4e-12
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 500 CEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR---IKVVDLVLELGADTNSQDLCGC 556
+ + + QS + + + + ++ +DL + N+QD G
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
+ L+ AA G+ +++ LL GA + + G +
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 86.6 bits (214), Expect = 1e-18
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 462 EFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR 521
+AR D + + + L D E I L + +
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH---------EP 168
Query: 522 GFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
T LH+A + +VD +++ + + Q G + LHY + L LLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
ASI + + G T L +A HE C + L A++ + +S +H W
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELL------------TQALSGRFNSHVHVEYEWR 276
Score = 79.7 bits (196), Expect = 2e-16
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 843 TPLHIACQNNNLSIVRL--LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
T LH+A ++ + + + + L N++ Q +G+TALHY + ++ LLL+ A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
+I N G+T L +A+++ +L
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELL 257
Score = 77.3 bits (190), Expect = 1e-15
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Query: 796 ECLNINICNSDGYTALHIATSLG---HYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
E + + + TALH+A +V L+ +++ T K T LH C +
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTD 216
Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL--KSGARPQIKN 905
N ++LLL K ++ + G T L A H + LL SG +
Sbjct: 217 NAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270
Score = 70.8 bits (173), Expect = 2e-13
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 534 RIKVVDLVLELGADTNSQDLC------GCSPLHYAATRGHQN---VLLLLLHSGASINLT 584
I + G D + + LH A + ++ L+ + +++
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQ 644
+G+TALH + C+K L+ +I N G++PL A R + +
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLL------RGKASIEIANESGETPLDIAKRLKHEHCEE 255
Query: 645 LLLDHGAN 652
LL +
Sbjct: 256 LLTQALSG 263
Score = 65.8 bits (160), Expect = 1e-11
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 686 LYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA 745
+ +P E P+P DY + R R ++ K+ L
Sbjct: 84 IMECCLPSE-DPVKPNPGSDMIARKDY------ITAKYMERRYARKKHADTAAKLHSLCE 136
Query: 746 LIENNEIKLIKSYFGLSNEEKVPDNA-------CHPLCQCAKCKEDVVESESRPVTDECL 798
++ +I + + + L + + +
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N++ G TALH + + ++LL+ +A I I + TPL IA + +
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEE 255
Query: 859 LLLAAKQCN 867
LL A
Sbjct: 256 LLTQA-LSG 263
Score = 60.8 bits (147), Expect = 4e-10
Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDN------EGNTALHLATNNGHETCVKALIYFNEQEV 615
A LL G + TALHLA + T + + + V
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV----DFLV 192
Query: 616 LN-LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
N N++ +G + LH ++LLL A+ + N+ TPL A + H
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252
Query: 672 VAKLLNAY 679
+LL
Sbjct: 253 CEELLTQA 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 84.5 bits (208), Expect = 2e-17
Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 4/175 (2%)
Query: 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514
+ + + E+ L + +
Sbjct: 168 PPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVN 227
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
+ T L A + + +L+ GA+ N D G PLH+A GH + L
Sbjct: 228 WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
L GA + D+EG L +A + V L + A GD
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL----RLAKMREAEAAQGQAGDE 338
Score = 82.1 bits (202), Expect = 9e-17
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN-IVTRVKQLTPL 845
R + G + + + + AD+N + TPL
Sbjct: 180 PGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPL 239
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
A N+L LL NVN D G LH+A I HT LA L LK GA ++
Sbjct: 240 IQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
G+ L +A + + +V +L
Sbjct: 299 SEGRDPLTIAMETANADIVTLL 320
Score = 65.6 bits (159), Expect = 3e-11
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
D T L AT+ L+ A++N + PLH A + + L L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR-GPLHHATILGHTGLACLFLKR 290
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
++ A+D G L A + ++ TLL + R
Sbjct: 291 G-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 58.6 bits (141), Expect = 4e-09
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
N+N +S G LH AT LGH L L + AD+ + PL IA + N IV
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR-DPLTIAMETANADIVT 318
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892
LL AK A + + + + +A+
Sbjct: 319 LLRLAKMREAEAAQGQAGDETYLDIFRDFSLMAS 352
Score = 57.1 bits (137), Expect = 1e-08
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 11/127 (8%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLT--DNEGNTALHLATNNGHETCVKALIYFNE 612
G + + L GA +N + T L AT + L+
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL---- 255
Query: 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL---QNANN 669
N+N ++ G PLH A G+T + L L GA+ + PL N
Sbjct: 256 --QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 670 LHVAKLL 676
+ LL
Sbjct: 314 ADIVTLL 320
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 80.4 bits (198), Expect = 2e-16
Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 481 KKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR---GFTVLHVAALYGRIK- 536
++ E L +C+ D + Q D VLH+A
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 537 --VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594
+VD +++ G +++ G + LHYAA + L LLL A + + G TAL +
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
A H+ C + L A PLH W
Sbjct: 266 ARKKHHKECEELL------------EQAQAGTFAFPLHVDYSWV 297
Score = 79.3 bits (195), Expect = 4e-16
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 843 TPLHIACQNNN---LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
LH+A + N L +V ++ +++A+ GNTALHYAA+ N + LLLK A
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
N G+T L +A++ +L
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELL 278
Score = 74.3 bits (182), Expect = 2e-14
Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 535 IKVVDLVLELGADTNSQDLC------GCSPLHYAATRGHQNVLL---LLLHSGASINLTD 585
+ V G D LH A +Q L ++ +G ++
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223
Query: 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
+GNTALH A C+K L+ + VN G++ L A + + +L
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLL------KGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 646 LLDHGAN 652
L A
Sbjct: 278 LEQAQAG 284
Score = 71.6 bits (175), Expect = 1e-13
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 14/134 (10%)
Query: 767 VPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH---YDLV 823
+ + + + +D + P + LH+A + + LV
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDA---------QAPEELVLHLAVKVANQASLPLV 209
Query: 824 RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883
+I ++ T LH A N ++LLL + V + G TAL A
Sbjct: 210 DFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR 267
Query: 884 INNHTNLATLLLKS 897
+H LL ++
Sbjct: 268 KKHHKECEELLEQA 281
Score = 68.5 bits (167), Expect = 1e-12
Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 27/191 (14%)
Query: 686 LYNYLVPKEKVSRPPSPPPT-------QDKYLDYSDVNEANISNVNVREGVRPRNITEIK 738
+ +P +P + KY+++ + + R++ +
Sbjct: 109 VMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVL 168
Query: 739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECL 798
+ FA ++ + + + H + A S P+ D +
Sbjct: 169 ---EAFANGQDFG-----QPLPGPDAQAPEELVLHLAVKVAN-------QASLPLVDFII 213
Query: 799 ----NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
+++ +DG TALH A D ++LL+ RA + V T L IA + ++
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHK 272
Query: 855 SIVRLLLAAKQ 865
LL A+
Sbjct: 273 ECEELLEQAQA 283
Score = 64.2 bits (156), Expect = 3e-11
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 556 CSPLHYAATRGHQNVLLLLLHSGASINLTDNE------GNTALHLATNNGHETCVKALIY 609
L A +L +G LHLA ++ + +
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV-- 209
Query: 610 FNEQEVLN-LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
+ + N +++A G++ LH AA + ++LLL A N+ T L A
Sbjct: 210 --DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 35.0 bits (80), Expect = 0.087
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
+ N G TAL IA H + LL +A
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 78.0 bits (192), Expect = 5e-15
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 843 TPLHIACQN---NNLSIVRLLLAAKQ--CNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897
LH+A + +L +V ++ Q +++A+ GNTALHYAA+ N + LLLK
Sbjct: 173 LVLHLAVKVANQASLPLVDFII---QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 898 GARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932
A N G+T L +A++ +L
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264
Score = 76.1 bits (187), Expect = 2e-14
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 509 SQSKPTTQSMDDRGFTVLHVAALY---GRIKVVDLVLELGADTNSQDLCGCSPLHYAATR 565
Q P + VLH+A + +VD +++ G +++ G + LHYAA
Sbjct: 159 GQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 217
Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
+ L LLL A + + G TAL +A H+ C + L A
Sbjct: 218 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL------------EQAQAG 265
Query: 626 QGDSPLHAAARWG 638
PLH W
Sbjct: 266 TFAFPLHVDYSWV 278
Score = 63.4 bits (154), Expect = 2e-10
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 15/122 (12%)
Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNE------GNTALHLATNNGHET---CVKALIY 609
L A +L +G LHLA ++ V +I
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 610 FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
+++A G++ LH AA + ++LLL A N+ T L A
Sbjct: 196 NG------GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Query: 670 LH 671
H
Sbjct: 250 KH 251
Score = 48.7 bits (116), Expect = 6e-06
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
+++ +DG TALH A D ++LL+ RA + V + T L IA + ++
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKECEE 257
Query: 859 LLLAAKQCNVNAQD 872
LL A+
Sbjct: 258 LLEQAQAGTFAFPL 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 2e-13
Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 91/340 (26%)
Query: 27 MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
T D +++ K L +L + PR S+ A + D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-----TNPRRLSI--IAESIRDGLATW-- 344
Query: 87 PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLK-YKVLCID 145
+++ +N ++ II S +L E K + L +
Sbjct: 345 -------DNWKHVNCDKL---TTIIES--------SLNVL-----EPAEYRKMFDRLSV- 380
Query: 146 NPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPF 205
P + I L + +W + ++ +++ K L+ E
Sbjct: 381 FPPSAH--------IP-TILL--SL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKES--- 424
Query: 206 DKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLI-------DSIKLAVETY-----MHH 253
+ +Y + L +SI ++ Y I D I ++ Y HH
Sbjct: 425 ---TISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 254 GIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIRED---------LYDTVPRARS 304
+K I F + + ++ K IR D + +T+ + +
Sbjct: 481 ------LKNIEH--PERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKF 529
Query: 305 EISHI----DCYSTILGKIGC-VRRCISAISKEDTRDKLQ 339
+I Y ++ I + + + D L+
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 73.0 bits (178), Expect = 3e-13
Identities = 103/635 (16%), Positives = 189/635 (29%), Gaps = 186/635 (29%)
Query: 129 ETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWT-ESKGKEIFEK-M 186
+ +M K +L +D + + + S TLR L WT SK +E+ +K +
Sbjct: 34 DCKDVQDMPK-SILS-KEEIDHIIMSKDAVS----GTLR----LFWTLLSKQEEMVQKFV 83
Query: 187 DEAIKM---FLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDN---------------K 228
+E +++ FL++ + E +Q ++ ++Y + DN K
Sbjct: 84 EEVLRINYKFLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 229 LRQSISINKYLIDSIKLAVETYMHHGIY---KTLIKGITACTALEDAQFNKMIRNLSD-- 283
LRQ++ L + + + G+ KT AL+ K+ +
Sbjct: 140 LRQAL---LELRPAKNVLI-----DGVLGSGKT-------WVALDVCLSYKVQCKMDFKI 184
Query: 284 --IQLK-------DLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDT 334
+ LK L++ + L ID T + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLL----------YQIDPNWTSRSDHSSNIK----LRIHSI 230
Query: 335 RDKLQGNIITVDDLLPMIVF---LVVKCALPN-WIAHLTYMKQFHFSQSSNVC----IDQ 386
+ +L+ LL + L+V L N + F+ S C +
Sbjct: 231 QAELR-------RLLKSKPYENCLLV---LLNVQ--NAKAWNAFNLS-----CKILLTTR 273
Query: 387 DSFLITSLEA------SIEHIKSGLLIGPSEPEAL------MSYDDQEELANAKFKPTV- 433
+ L A S++H L P E ++L D P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRL 330
Query: 434 -----EMSDLTTQLKVYNKYNNYKKI----SSLTKLFE------FARLG----DGD---K 471
+ D + N K SSL L F RL
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 472 VRAILQEENKKEDSES-LPLCHP--LCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHV 528
+ +++ + K D + H L E I++ S +++ LH
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENE--YALHR 447
Query: 529 AAL--YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL------------- 573
+ + Y K D +L Q H + + L
Sbjct: 448 SIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 574 LLHSGASINLTDNEGNTAL-------HLATNNGH-ETCVKALIYFNEQEVLNLNINAVNN 625
+ H + N + + NT ++ N+ E V A++ F + + N +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIEENLIC- 561
Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
S YT ++++ L E K
Sbjct: 562 ---SK--------YTDLLRIALMAEDEAIFEEAHK 585
Score = 62.6 bits (151), Expect = 5e-10
Identities = 83/612 (13%), Positives = 180/612 (29%), Gaps = 175/612 (28%)
Query: 277 MIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRD 336
M + Q + DI D + + DC D +D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAF------VDNFDCK--------------------DVQD 40
Query: 337 KLQGNIIT---VDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS 393
+ +I++ +D ++ + ++ + S+ + F+
Sbjct: 41 MPK-SILSKEEIDHII----------MSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEV 86
Query: 394 LEASIEHIKSGLLIGPSEPEALM-SYDDQ-EELANA--KFKP-TVEMSDLTTQLKVYNKY 448
L + + + S + +P + Y +Q + L N F V +L+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----- 141
Query: 449 NNYKKISSLTKLFEFARLGDGDKVRAI--LQEENKKEDSE------SLPLCHPLCSCDDC 500
++ + LG G A+ + + +L C+ S +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETV 198
Query: 501 EEAINLKHSQSKPTTQSMDDRGFTV-LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPL 559
E + Q P S D + L + ++ ++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----------------------- 235
Query: 560 HYAATRGHQNVLLLLLH--SGASIN----------LTDNEGNTALHLATNNGHETCVKAL 607
++ ++N LL+LL+ + + N T + T A H +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 608 IYFNEQEVLNLNINAVNNQGD---------SPLHAAARWGYTSIIQLLLDHGANPTLENK 658
+ EV +L + ++ + +P SII + G T +N
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIAESIRDGLA-TWDNW 347
Query: 659 RKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEA 718
+ V N + L + N L P E + + S
Sbjct: 348 KHV----NCDKLT---------TIIESSLNVLEPAE----------YRKMFDRLSVFPP- 383
Query: 719 NISNVNVREGV--------RPRNITEIKKVEQL--FALIENNEIKLIKSYFGLSNEEKVP 768
+ ++ + ++ + V +L ++L+E + S + E KV
Sbjct: 384 ---SAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 769 ---DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIA---TSLGHYDL 822
+ A H +V+ + P T + ++ D Y HI ++ H +
Sbjct: 439 LENEYALH---------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 823 V----RLLINYR 830
+ + +++R
Sbjct: 490 MTLFRMVFLDFR 501
Score = 46.0 bits (108), Expect = 6e-05
Identities = 65/380 (17%), Positives = 113/380 (29%), Gaps = 90/380 (23%)
Query: 593 HLATNNG-HETCVKALIYFNEQE-VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
H+ G H+ K ++ E V N + V D P ++ II
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMS----- 57
Query: 651 ANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK-EKVSRPPSPPPTQDKY 709
+ R L + V K + V + Y +L+ + R PS Y
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRIN--YKFLMSPIKTEQRQPSMM--TRMY 112
Query: 710 LDYSDVNEANISNVNVREGVRPRNITEIKKVEQL-FALIENNEIKLIKSY----FG---L 761
++ D + N N N++ ++ +L AL+E K + G +
Sbjct: 113 IEQRD----RLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 762 SNE-------EKVPDNACH--PLCQCAKCKEDVVESESRPVTDECLNI--NIC-NSDGYT 809
+ + + D L C E V+E + I N SD +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLE----MLQKLLYQIDPNWTSRSDHSS 221
Query: 810 ALHIATSLGHYDLVRLLIN--YRADINI---VTRVKQLTPLHIACQ----NNNLSIVRLL 860
+ + +L RLL + Y + + V K +++C+ + L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
AA +++ + L + +LLLK L Q
Sbjct: 282 SAATTTHISLDHHSM--TLT------PDEVKSLLLK--------------YLDCRPQD-- 317
Query: 921 LSLVRVLTHEA----PFVLK 936
L E P L
Sbjct: 318 ------LPREVLTTNPRRLS 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 7e-09
Identities = 100/637 (15%), Positives = 188/637 (29%), Gaps = 208/637 (32%)
Query: 22 LQTGTMESTYDEDLSENIFFKA--LKTEHGELFEKATQDGWIICIPRVCSLPKYALTYED 79
L G++E + FF A L+ + ++ + T+ P + + +
Sbjct: 11 LSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAELVGKFLG 66
Query: 80 FFNHILIPSE--------ELPETHFRT--LNDQEIRICNRIISIEADGGSTFSTQILFEE 129
+ + ++ PS+ L T F L +I + + +T +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--ALAAKLLQENDTTLVKTKELIK 124
Query: 130 TYYTDEMLKYKVLCIDNPLDINLE-------NTNDASI-------SNIQT----LRDCID 171
Y T + P D +A + N LRD
Sbjct: 125 NYIT------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--- 175
Query: 172 LLWTESKG--KEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNIC--LKDN 227
L+ ++ + E L + + EK++ LNI L++
Sbjct: 176 -LYQTYHVLVGDLIKFSAE-----TL-------SELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 228 KLRQS--------ISINKYLIDSIKLAVETYM--------HHGIYKTLIKGITAC----- 266
IS LI I+LA Y+ G ++ +KG T
Sbjct: 223 SNTPDKDYLLSIPISCP--LIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRC- 325
TA+ A+ + D E + +V +A T+L IG RC
Sbjct: 279 TAVAIAE--------T-------DSWESFFVSVRKA----------ITVLFFIGV--RCY 311
Query: 326 ----ISAISKEDTRDKLQGN--IITVDDLLPMIVFLVVKCALPNWIAHL-TYMKQF--HF 376
+++ D L+ N + + PM L + L + Y+ + H
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPS-----PM---LSIS-NLT--QEQVQDYVNKTNSHL 360
Query: 377 SQSSNVCID----QDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPT 432
V I + +++ GP P++L + L AK
Sbjct: 361 PAGKQVEISLVNGAKNLVVS---------------GP--PQSLYGLNLT--LRKAKAPSG 401
Query: 433 VEMSDLTTQLKV-YNK-----YNNYKKI-----SSLTKLFEFARLGD-GDKVRAILQEEN 480
++ Q ++ +++ N + + S L L D + L + N
Sbjct: 402 LD------QSRIPFSERKLKFSNRFLPVASPFHSHL--------LVPASDLINKDLVKNN 447
Query: 481 KKEDSESL--PLCHP-----LCSCDD----------CEEAINLKHSQSKPTTQSMD-DRG 522
+++ + P+ L + + + T +D G
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 523 FTVLHVAALYGRIKV---VDLVLELGA-DTNSQDLCG 555
+ L R K V +++ G D N D G
Sbjct: 508 -GASGLGVLTHRNKDGTGVRVIV-AGTLDINPDDDYG 542
Score = 57.8 bits (139), Expect = 2e-08
Identities = 83/500 (16%), Positives = 137/500 (27%), Gaps = 158/500 (31%)
Query: 505 NLKHSQSKPT------TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCS 557
+L+H PT +Q + F + G + + +L G
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQ--FNKILPEPTEG--------FAADDEPTTPAELVG-K 63
Query: 558 PLHYAATRGHQN-------VLLLLLHSGASINLTDNEGNT-ALHLATNN-GHETCVKALI 608
L Y ++ + VL L L + L N+ + A L N K LI
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 609 --YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII-----QLLLDHGANPT-LENKRK 660
Y + + + + +S L A G ++ Q G E R
Sbjct: 124 KNYITARIMAKRPFD---KKSNSALFRAVGEGNAQLVAIFGGQ-----GNTDDYFEELRD 175
Query: 661 --------VTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDY 712
V L + +++L+ + ++ + + PS P +D YL
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKD-YLLS 233
Query: 713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK--SYF------GLSNE 764
IS LI +I+ Y G +
Sbjct: 234 -----IPIS----------------------CPLIG-----VIQLAHYVVTAKLLGFT-- 259
Query: 765 EKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG---HYD 821
P L + +V TA+ IA + +
Sbjct: 260 ---PGELRSYLKGATGHSQGLV----------------------TAVAIAETDSWESFFV 294
Query: 822 LVRLLINYRADINIVTRVKQLTP--------LHIACQNNN------LSIVRLLLAAKQCN 867
VR I I R + P L + +NN LSI L Q
Sbjct: 295 SVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 868 VNA--QDYRGNTALHYAAINNHTN------------LATLLLKSGARPQIKNHYGQTCLH 913
VN + + +N N L L K+ A + Q+ +
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD----QSRIP 408
Query: 914 MAQQMTSLSLVRVLTHEAPF 933
+++ S R L +PF
Sbjct: 409 FSERKLKFS-NRFLPVASPF 427
Score = 41.2 bits (96), Expect = 0.002
Identities = 66/405 (16%), Positives = 114/405 (28%), Gaps = 154/405 (38%)
Query: 645 LLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHK-------PKPLYNYLVPKEKVS 697
L L HG +LE+ V P A + P+P + E
Sbjct: 9 LTLSHG---SLEHVLLV-P----TASFFI----ASQLQEQFNKILPEPTEGFAADDE--- 53
Query: 698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKV--------EQLFALIEN 749
P +P K+L Y V V P + + +V E + +E
Sbjct: 54 -PTTPAELVGKFLGY------------VSSLVEPSKVGQFDQVLNLCLTEFENCY--LEG 98
Query: 750 NEI-------------------KLIKSYFGLSNEEKVPDNACHP--LCQCAKC------- 781
N+I +LIK+Y K P + L +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 782 ------------KE--------------------DVVESESRPVTDE----CLNINICN- 804
+E + + R D +NI
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 805 --------SDGYTA-------LHIATSLGHYDLVRLLINY-----RADINIVTRVKQ--L 842
Y L L HY + L+ + R+ + T Q +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 843 TPLHIAC-------QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAI-----NNHTNL 890
T + IA + + +L V + NT+L + + NN
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 891 ATLLLKSG-ARPQIKNHYGQTCLHM-AQQMTSLSLV-----RVLT 928
+ +L S + Q++++ +T H+ A + +SLV V++
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Score = 39.3 bits (91), Expect = 0.007
Identities = 36/253 (14%), Positives = 78/253 (30%), Gaps = 76/253 (30%)
Query: 171 DLLWTESKGKEIFEKMDEAIKM---FLLTNDQFEYNP------FDKQKYLVEKLYQNCLN 221
DL T ++++ + D K F + D NP F +K +++ +N
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSIL-DIVINNPVNLTIHFGGEK--GKRIRENYSA 1690
Query: 222 ICLKDNKLRQSISINKYLIDSIKLAVETYMHHG----IYKTLIKGIT--ACTALEDAQFN 275
+ + + + + + I +Y + T T A T +E A F
Sbjct: 1691 MIFETIVDGKLKT--EKIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALTLMEKAAF- 1744
Query: 276 KMIRNLSDIQLKD-------------------LDIREDLYDTV-----------PR---A 302
+ +++ I + I E L + V PR
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 303 RSEISHIDCYSTILGKIGC---VRRCISAISKEDTRDKLQ--------------GNIITV 345
RS I + ++ + + K T ++ G++ +
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKR-TGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 346 DDLLPMIVFLVVK 358
D + ++ F+ ++
Sbjct: 1863 DTVTNVLNFIKLQ 1875
Score = 38.5 bits (89), Expect = 0.013
Identities = 74/424 (17%), Positives = 123/424 (29%), Gaps = 151/424 (35%)
Query: 19 FSELQTGTMESTYDEDLSENIFFKA--LKT--EHGELFEKATQDG-----WI-------- 61
F EL+ + TY + + I F A L EK G W+
Sbjct: 170 FEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 62 ----ICIPRVCSLPKYALT----YEDFFNHI-LIPSEELPETHFRTLNDQEIRICNRIIS 112
+ IP + S P + Y + P E T + Q + + I+
Sbjct: 228 KDYLLSIP-I-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIA 284
Query: 113 IEADGGSTFST------QILF------EETY----YTDEMLKYKV----------LCIDN 146
E D +F +LF E Y +L+ + L I N
Sbjct: 285 -ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 147 PLDINLEN----TN-------DASISNIQTLRDCI------DL--LWTESKGKEIFEKMD 187
+++ TN IS + ++ + L L K
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT------LRKAK 397
Query: 188 EAIKMFLLTNDQFEYNPFDKQK------YLV------EKLYQNCLNICLKDNKLRQSISI 235
+ DQ PF ++K +L L ++ KD + ++S
Sbjct: 398 APSGL-----DQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV-KNNVSF 450
Query: 236 NKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDL 295
N I++ V Y T D SD+++ I E +
Sbjct: 451 NA---KDIQIPV--------YDT-----------FDG---------SDLRVLSGSISERI 479
Query: 296 YDTVPR--------ARSEISHI-DC---YSTILGKI------GCVRRCISAISKEDTRDK 337
D + R + + +HI D ++ LG + G R I A + + D
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Query: 338 LQGN 341
G
Sbjct: 540 DYGF 543
Score = 38.1 bits (88), Expect = 0.016
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 46/160 (28%)
Query: 509 SQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPL--------- 559
SQ Q M G LY K V AD + +D G S L
Sbjct: 1626 SQE----QGM---G------MDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVN 1671
Query: 560 ---HYAATRGH---QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613
H+ +G +N ++ + L + ++ + + + +E+
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST--------SYTFRSEK 1723
Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
+L+ Q P A + + L G P
Sbjct: 1724 GLLSATQFT---Q---P--ALTLMEK-AAFEDLKSKGLIP 1754
Score = 37.3 bits (86), Expect = 0.030
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 25/143 (17%)
Query: 807 GYTALHI-ATSLGHYD-LVRLLIN-----YRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
GY + + + +G +D ++ L + Y +I +L + +++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQ----TCLHMA 915
+ A+ D + N+AL A + L + G GQ
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---G---------GQGNTDDYFEEL 173
Query: 916 QQM--TSLSLVRVLTHEAPFVLK 936
+ + T LV L + L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLS 196
Score = 32.7 bits (74), Expect = 0.75
Identities = 49/312 (15%), Positives = 101/312 (32%), Gaps = 134/312 (42%)
Query: 13 GMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKA---TQD--GW-IICIPR 66
GM G M+ Y KA + +++ +A +D G+ I+ I
Sbjct: 1630 GM----------G-MD-LYKT-------SKAAQ----DVWNRADNHFKDTYGFSILDI-- 1664
Query: 67 VCSLPK-----------------Y-ALTYEDFFNHILIPSEELPETHFRTLNDQEIRICN 108
V + P Y A+ +E + + +E++ F+ +N+
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-KLKTEKI----FKEINEHSTSYT- 1718
Query: 109 RIISIEADGG---STFSTQI-LFEETYYTDEMLKYKVLCIDNPLDIN-------L-ENTN 156
++ G +T TQ L E ++ L + + L E
Sbjct: 1719 ----FRSEKGLLSATQFTQPALT-----LMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 157 DASISNIQTLRDCIDLLWTESKGKEIFEKM--DEA----IKMFLLTNDQFEYNP------ 204
AS++++ ++ ++++ +G + + DE M + NP
Sbjct: 1770 LASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAI-------NPGRVAAS 1820
Query: 205 FDKQ--KYLVEKLYQ-----------NC----------------LNICLKDNKLRQSISI 235
F ++ +Y+VE++ + N + L KL++
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK---- 1876
Query: 236 NKYLIDSIKLAV 247
ID I+L
Sbjct: 1877 ----IDIIELQK 1884
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.12
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 21/39 (53%)
Query: 736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHP 774
+KK++ +KL Y D+A P
Sbjct: 21 ALKKLQ--------ASLKL---Y--------ADDSA--P 38
Score = 31.8 bits (71), Expect = 0.42
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 22/46 (47%)
Query: 391 ITSLEASIEHIKSGLLIGP-SEPEALMSYDDQEELA-NAKFKPTVE 434
+ L+AS++ L S P A LA A T+E
Sbjct: 22 LKKLQASLK------LYADDSAP-A---------LAIKA----TME 47
Score = 29.9 bits (66), Expect = 2.0
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 285 QLKDLDIREDLY--DTVP----RARSE 305
LK L LY D+ P +A E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human
herpesvirus 8 type M} PDB: 3pov_A*
Length = 508
Score = 34.0 bits (77), Expect = 0.23
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 388 SFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNK 447
F + + ++E++ G L PSE + L++YD + E K + + +L + ++N
Sbjct: 301 DFFYSISKPAVEYVGLGKL--PSESDYLVAYDQEWEACPRKKRKLTPLHNLIRECILHNS 358
Query: 448 YN 449
Sbjct: 359 TT 360
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus,
EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A
{Human herpesvirus 4} PDB: 2w4b_A
Length = 470
Score = 33.1 bits (75), Expect = 0.46
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 398 IEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYN 449
+E++ G L PSE + L++ D+ L + + + DL N+
Sbjct: 270 VEYVPDGRL--PSEGDYLLTQDEAWNLKDVRKRKLGPGHDLVADSLAANRGV 319
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 30.0 bits (68), Expect = 0.75
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 519 DDRGFTVLHV-----AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL 573
D+ G +L + AA GR+ D VL + N DL + + +
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAI----NGHDLKYGT---------PELAAQI 73
Query: 574 LLHSGASINLT 584
+ SG +NLT
Sbjct: 74 IQASGERVNLT 84
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 29.6 bits (67), Expect = 1.5
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 528 VAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT--- 584
AA GR+ + D +LE+ N L G + + L+ H G +
Sbjct: 48 PAAADGRLSLGDRILEV----NGSSLLGLG---------YLRAVDLIRHGGKKMRFLVAK 94
Query: 585 -DNEGNTALHLATNNG 599
D E +H ++G
Sbjct: 95 SDVETAKKIHSGPSSG 110
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 31.3 bits (70), Expect = 1.7
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET 602
PL Y + + + + S ++ T ++ + G ++
Sbjct: 482 SFGPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGEKS 528
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 28.8 bits (65), Expect = 2.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT 584
AA+ GR+ V D VL + N D+ H + L +G + L
Sbjct: 47 AAMDGRLGVNDCVLRV----NEVDVSEVV---------HSRAVEALKEAGPVVRLV 89
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 528 VAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT 584
A G +K D ++E+ + DL S H+ + + +G +
Sbjct: 51 PAGKNGTLKPGDRIVEV----DGMDLRDAS---------HEQAVEAIRKAGNPVVFM 94
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.4 bits (69), Expect = 3.0
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 555 GCSPLHYAATRGHQNVLLL---LLHSGAS 580
G + + A +G + +L+ H+ S
Sbjct: 15 GMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 30.2 bits (68), Expect = 3.7
Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 162 NIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLN 221
+ + + + T S I ++ A + + + F K+ L+E L
Sbjct: 230 YRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLF---FAKRAQLIECLENKGFE 286
Query: 222 ICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIY--KTLIKGITACTAL----EDAQFN 275
+ D+ L+ + I + +M+ IY A L + F+
Sbjct: 287 MLQVDDPLK--LLIKYEGFTGHDIQ-NWFMNAHIYLELADDYQALAILPLWHHDDTYLFD 343
Query: 276 KMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISA 328
++R + D+ L + + + + + + A
Sbjct: 344 SLLRKIEDMILPKKSVSKVKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLA 396
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 4.8
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 710 LDYSDVNEANISNVNVREGVRPR----NITEIKKVEQ------LFAL---------IENN 750
++YS + N + + + V P + E+ +Q + A + N
Sbjct: 122 VNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPN 181
Query: 751 EIKLIKSYFGLSNEEKV 767
EI ++ +N + V
Sbjct: 182 EILFSENNDMDNNNDGV 198
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 28.9 bits (64), Expect = 9.0
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 376 FSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEM 435
+ S ++ ++ LE +E +A SY E L +F P + +
Sbjct: 243 WEISKAQLPKEELEIVVILEGMVEATGMTC-------QARSSYITSEILWGYRFTPVLTL 295
Query: 436 SDLTTQLKV-YNKYNNYKKIS----SLTKLFEFARLGDGDKVRAILQ 477
D +V YN ++ + S S +L E A + + + + Q
Sbjct: 296 ED--GFYEVDYNSFHETYETSTPSLSAKELAELANRAESNSLEVLFQ 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,766,848
Number of extensions: 825004
Number of successful extensions: 3763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 593
Length of query: 936
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 834
Effective length of database: 3,853,851
Effective search space: 3214111734
Effective search space used: 3214111734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)