Query psy8455
Match_columns 101
No_of_seqs 137 out of 1063
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00173 SH2 Src homology 2 dom 99.9 1.9E-21 4.2E-26 113.5 11.1 85 1-88 7-94 (94)
2 smart00252 SH2 Src homology 2 99.8 2.2E-20 4.8E-25 107.3 9.9 73 1-73 8-83 (84)
3 PF00017 SH2: SH2 domain; Int 99.8 1.2E-20 2.6E-25 106.8 7.7 68 1-68 6-77 (77)
4 KOG4637|consensus 99.8 1.4E-18 3.1E-23 121.0 5.9 95 1-95 30-126 (464)
5 KOG4226|consensus 99.7 1.1E-17 2.3E-22 113.1 8.0 90 1-90 288-379 (379)
6 KOG4792|consensus 99.7 1.2E-17 2.5E-22 110.3 7.4 87 1-93 18-113 (293)
7 KOG0790|consensus 99.7 1.1E-16 2.4E-21 114.1 7.7 90 1-92 117-219 (600)
8 KOG1264|consensus 99.7 1.2E-16 2.7E-21 120.1 7.8 91 3-95 544-646 (1267)
9 KOG4278|consensus 99.6 5.4E-16 1.2E-20 115.2 8.1 91 1-97 159-253 (1157)
10 KOG1264|consensus 99.6 1.8E-15 3.9E-20 114.0 7.5 85 1-91 655-741 (1267)
11 KOG4637|consensus 99.6 3.1E-15 6.7E-20 104.5 6.3 91 2-93 340-433 (464)
12 KOG2996|consensus 99.5 6.6E-15 1.4E-19 107.9 5.3 90 1-90 692-783 (865)
13 KOG0197|consensus 99.5 3.5E-14 7.7E-19 102.5 7.9 85 1-90 88-185 (468)
14 KOG0194|consensus 99.5 1.6E-13 3.4E-18 99.8 9.7 89 1-92 56-151 (474)
15 KOG0790|consensus 99.2 2.3E-11 5E-16 87.3 6.4 92 1-92 11-106 (600)
16 KOG1930|consensus 99.2 3.9E-11 8.6E-16 85.2 6.9 84 1-90 219-323 (483)
17 KOG3601|consensus 99.1 1.7E-11 3.6E-16 80.3 -0.2 73 1-73 65-139 (222)
18 KOG3697|consensus 99.1 2.6E-10 5.6E-15 77.9 5.4 69 23-91 276-344 (345)
19 PF14633 SH2_2: SH2 domain; PD 98.2 1.8E-05 3.9E-10 53.0 9.0 70 1-70 44-123 (220)
20 KOG3751|consensus 98.0 1.2E-06 2.6E-11 64.4 -0.1 74 1-75 526-609 (622)
21 PF14633 SH2_2: SH2 domain; PD 96.6 0.0082 1.8E-07 40.3 5.7 56 15-71 161-219 (220)
22 KOG4566|consensus 96.5 0.0069 1.5E-07 41.6 4.8 71 2-72 60-139 (258)
23 KOG1856|consensus 96.1 0.015 3.2E-07 47.0 5.5 69 2-70 1115-1193(1299)
24 KOG1856|consensus 96.0 0.025 5.4E-07 45.8 6.3 68 3-72 1213-1288(1299)
25 PF02762 Cbl_N3: CBL proto-onc 90.0 2.3 4.9E-05 24.1 6.0 33 4-36 12-47 (86)
26 smart00557 IG_FLMN Filamin-typ 82.9 3.1 6.7E-05 23.8 3.9 25 13-37 54-78 (93)
27 PF00630 Filamin: Filamin/ABP2 74.2 4.8 0.0001 22.9 2.9 25 13-37 68-92 (101)
28 KOG3667|consensus 74.1 8.5 0.00019 30.2 4.8 44 1-45 570-616 (682)
29 PF11149 DUF2924: Protein of u 58.5 35 0.00075 21.4 4.5 35 31-67 87-121 (136)
30 PF09430 DUF2012: Protein of u 54.5 16 0.00034 22.1 2.6 34 10-45 25-59 (123)
31 KOG1785|consensus 54.3 21 0.00045 26.6 3.5 28 12-39 277-305 (563)
32 PF07935 SSV1_ORF_D-335: ORF D 50.8 43 0.00093 18.6 4.7 17 56-72 33-49 (72)
33 PF13983 YsaB: YsaB-like lipop 50.4 34 0.00074 18.9 3.2 30 14-43 46-75 (77)
34 PF00408 PGM_PMM_IV: Phosphogl 43.6 17 0.00038 19.6 1.4 15 12-26 32-47 (73)
35 KOG0518|consensus 41.0 41 0.00088 28.0 3.5 24 13-36 905-928 (1113)
36 PF14822 Vasohibin: Vasohibin 38.7 72 0.0016 22.0 4.0 63 28-90 132-209 (246)
37 KOG2293|consensus 35.4 75 0.0016 24.5 4.0 66 1-72 474-543 (547)
38 PF09625 VP9: VP9 protein; In 32.1 93 0.002 17.5 3.1 16 18-33 29-44 (79)
39 COG1724 Predicted RNA binding 30.1 45 0.00097 18.2 1.6 18 7-24 12-29 (66)
40 PF13912 zf-C2H2_6: C2H2-type 29.4 48 0.001 13.8 1.5 17 55-71 8-24 (27)
41 PF13620 CarboxypepD_reg: Carb 29.3 86 0.0019 16.7 2.8 24 13-38 36-59 (82)
42 cd00214 Calpain_III Calpain, s 28.8 1.2E+02 0.0026 18.7 3.7 22 14-35 117-141 (150)
43 COG5226 CEG1 mRNA capping enzy 27.6 1.9E+02 0.0041 21.1 4.7 47 16-64 63-113 (404)
44 smart00720 calpain_III calpain 27.1 1.4E+02 0.0031 18.0 3.8 10 14-23 112-121 (143)
45 cd01229 PH_etc2 Epithelial cel 27.0 1.4E+02 0.0029 18.5 3.5 18 19-36 80-97 (129)
46 PF01067 Calpain_III: Calpain 26.9 1E+02 0.0023 18.5 3.1 24 13-36 115-141 (147)
47 PF10505 NARG2_C: NMDA recepto 25.6 1.1E+02 0.0024 20.7 3.2 21 13-35 144-164 (220)
48 PF06130 PduL: Propanediol uti 23.5 78 0.0017 17.4 1.9 20 1-21 13-32 (71)
49 PF07240 Turandot: Stress-indu 23.0 69 0.0015 18.4 1.6 18 56-73 7-24 (85)
50 PF08350 DUF1724: Domain of un 23.0 69 0.0015 17.1 1.6 13 62-74 51-63 (64)
51 PRK04081 hypothetical protein; 22.6 2.5E+02 0.0054 18.9 4.4 37 12-49 45-81 (207)
52 TIGR03769 P_ac_wall_RPT actino 22.0 93 0.002 15.1 1.8 12 24-35 10-21 (41)
53 PF09634 DUF2025: Protein of u 21.9 50 0.0011 19.3 0.9 22 6-27 11-38 (106)
54 COG4398 Uncharacterized protei 21.1 66 0.0014 23.1 1.5 53 12-71 261-317 (389)
No 1
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.88 E-value=1.9e-21 Score=113.53 Aligned_cols=85 Identities=35% Similarity=0.505 Sum_probs=70.0
Q ss_pred CChHHHHhcccC-CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCeEEeC-CcccCCHHHHHHHHhhCCcCccc
Q psy8455 1 MSRIAKTAFPSR-QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTK-DRMFESVSHLVNYHCQNQLPIIS 77 (101)
Q Consensus 1 isR~~a~~~Ll~-~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~~~~~-~~~F~sl~~LI~~y~~~~~~l~~ 77 (101)
|+|++|++.|.. ++|+||||.|.+.++.|+||++.++.++|++|. ..++++... ...|+||.|||+||+.+++ .
T Consensus 7 i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~~~---~ 83 (94)
T cd00173 7 ISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKNPL---S 83 (94)
T ss_pred CCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhCcc---C
Confidence 789996555543 799999999998789999999999999999997 445555554 6899999999999999885 2
Q ss_pred cCcceEEcCcc
Q psy8455 78 AESALILRNPV 88 (101)
Q Consensus 78 ~~~~~~L~~Pv 88 (101)
....+.|..|+
T Consensus 84 ~~~~~~L~~p~ 94 (94)
T cd00173 84 DGLGVKLRYPV 94 (94)
T ss_pred CCcccEeCCcC
Confidence 34567888886
No 2
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.85 E-value=2.2e-20 Score=107.29 Aligned_cols=73 Identities=36% Similarity=0.525 Sum_probs=62.6
Q ss_pred CChHHHHhcccC-CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCeEEeCC-cccCCHHHHHHHHhhCCc
Q psy8455 1 MSRIAKTAFPSR-QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKD-RMFESVSHLVNYHCQNQL 73 (101)
Q Consensus 1 isR~~a~~~Ll~-~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~~~~~~-~~F~sl~~LI~~y~~~~~ 73 (101)
|+|++|++.|.. .+|+||||.|++.++.|+||++.++.++||+|. ..+|.|.+++ ..|+||.+||+||+.+++
T Consensus 8 i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~~~~ 83 (84)
T smart00252 8 ISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQKNSL 83 (84)
T ss_pred CCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 689996666654 389999999998788999999999999999997 4447777776 899999999999998764
No 3
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.84 E-value=1.2e-20 Score=106.81 Aligned_cols=68 Identities=34% Similarity=0.465 Sum_probs=57.8
Q ss_pred CChHHHHhcccC--CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCeEEe-CCcccCCHHHHHHHH
Q psy8455 1 MSRIAKTAFPSR--QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRT-KDRMFESVSHLVNYH 68 (101)
Q Consensus 1 isR~~a~~~Ll~--~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~~~~-~~~~F~sl~~LI~~y 68 (101)
|+|++|++.|.. ++|+||||.|.+.+|.|+||++.++.+.|++|. ..++.|.+ ++..|+||.+||+||
T Consensus 6 isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 6 ISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp SHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 689997666654 599999999998889999999999999999996 55564555 458899999999998
No 4
>KOG4637|consensus
Probab=99.75 E-value=1.4e-18 Score=121.00 Aligned_cols=95 Identities=26% Similarity=0.372 Sum_probs=84.1
Q ss_pred CChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEeC-CcccCCHHHHHHHHhhCCcCcccc
Q psy8455 1 MSRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTK-DRMFESVSHLVNYHCQNQLPIISA 78 (101)
Q Consensus 1 isR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~~-~~~F~sl~~LI~~y~~~~~~l~~~ 78 (101)
|||+++.+.|. ++||+||||+..+-+|+|+|+++.+|..+-++|...+|.|-|. .-.|.|+.+||+||+..++..+++
T Consensus 30 isReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn~yr~~SL~~yN~ 109 (464)
T KOG4637|consen 30 ISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNP 109 (464)
T ss_pred cCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHHHHhhhHHHhhCc
Confidence 78999777777 6799999999888899999999999999999998778877665 479999999999999999999888
Q ss_pred CcceEEcCccccCCCCC
Q psy8455 79 ESALILRNPVAKCATGA 95 (101)
Q Consensus 79 ~~~~~L~~Pv~~~~~~~ 95 (101)
...++|.+||.+..+.+
T Consensus 110 ~LDvrLlyPVs~~r~dq 126 (464)
T KOG4637|consen 110 KLDVRLLYPVSRYRQDQ 126 (464)
T ss_pred ccceeeechHHHhhhcc
Confidence 89999999999865543
No 5
>KOG4226|consensus
Probab=99.74 E-value=1.1e-17 Score=113.11 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=76.4
Q ss_pred CChHHHHhccc--CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEeCCcccCCHHHHHHHHhhCCcCcccc
Q psy8455 1 MSRIAKTAFPS--RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQLPIISA 78 (101)
Q Consensus 1 isR~~a~~~Ll--~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~~~~~F~sl~~LI~~y~~~~~~l~~~ 78 (101)
|+|.+|+..|- -.+|+||||+|++.||+|.+|++..++-+||+++..++.|.++++.|.++.+||+||++.++--...
T Consensus 288 itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGqRkF~tmd~Lv~HY~kaPIfts~q 367 (379)
T KOG4226|consen 288 ITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQRKFHTMDELVEHYKKAPIFTSEQ 367 (379)
T ss_pred ccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEeccceeccHHHHHHhhhcCCceecCC
Confidence 68999555442 2599999999999999999999999999999999778999999999999999999999987654334
Q ss_pred CcceEEcCcccc
Q psy8455 79 ESALILRNPVAK 90 (101)
Q Consensus 79 ~~~~~L~~Pv~~ 90 (101)
++...|..|+++
T Consensus 368 gEKLyLvr~Lpk 379 (379)
T KOG4226|consen 368 GEKLYLVRALPK 379 (379)
T ss_pred CceEEEeccCCC
Confidence 667788887753
No 6
>KOG4792|consensus
Probab=99.73 E-value=1.2e-17 Score=110.29 Aligned_cols=87 Identities=30% Similarity=0.488 Sum_probs=74.2
Q ss_pred CChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEEC--CC------CeEEeCCcccCCHHHHHHHHhhC
Q psy8455 1 MSRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLID--PE------GVVRTKDRMFESVSHLVNYHCQN 71 (101)
Q Consensus 1 isR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~--~~------~~~~~~~~~F~sl~~LI~~y~~~ 71 (101)
|||+||.+.|. ++.|.||||+|.+.||+|+|+|+-+.+|.||.|.. .. ..|.+++..|++|+.|++||+-+
T Consensus 18 mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~Fd~lPaLL~fykih 97 (293)
T KOG4792|consen 18 MSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQEFDSLPALLEFYKIH 97 (293)
T ss_pred ccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeeccccccchHHHHhheeEe
Confidence 79999766665 46999999999999999999999999999999963 11 26888999999999999999988
Q ss_pred CcCccccCcceEEcCccccCCC
Q psy8455 72 QLPIISAESALILRNPVAKCAT 93 (101)
Q Consensus 72 ~~~l~~~~~~~~L~~Pv~~~~~ 93 (101)
-+. .+.|+.|.+|...
T Consensus 98 yLd------tttLi~p~~r~~~ 113 (293)
T KOG4792|consen 98 YLD------TTTLIEPAKRSRQ 113 (293)
T ss_pred eec------ccccccccccccc
Confidence 763 3679999988765
No 7
>KOG0790|consensus
Probab=99.68 E-value=1.1e-16 Score=114.14 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=73.5
Q ss_pred CChHHHHhccc-C--CCCcEEEEeeCCCCCCEEEEEEeCC---------eEEEEEEECCCCeEEeCC-cccCCHHHHHHH
Q psy8455 1 MSRIAKTAFPS-R--QDGDFLVRESQGSPGQYVLTGYQGG---------TKKHLLLIDPEGVVRTKD-RMFESVSHLVNY 67 (101)
Q Consensus 1 isR~~a~~~Ll-~--~~G~FLvR~s~~~~g~~~Lsv~~~~---------~~~h~~I~~~~~~~~~~~-~~F~sl~~LI~~ 67 (101)
++-.+ ||.|+ . ++|+||||+|.+.||+|+||++.+. +|.|+.|++.++.|.+++ ..|+|+.+||+|
T Consensus 117 Lsgke-AekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~sltdLidh 195 (600)
T KOG0790|consen 117 LSGKE-AEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFDSLTDLVEH 195 (600)
T ss_pred CCchh-HHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccchHHHHHHH
Confidence 45677 56666 2 5999999999999999999999865 899999998889999975 899999999999
Q ss_pred HhhCCcCccccCcceEEcCccccCC
Q psy8455 68 HCQNQLPIISAESALILRNPVAKCA 92 (101)
Q Consensus 68 y~~~~~~l~~~~~~~~L~~Pv~~~~ 92 (101)
|++++.-.. .+.-..|+.|.....
T Consensus 196 ykknpmvEt-~gtvv~LrqP~naTr 219 (600)
T KOG0790|consen 196 YKKNPMVET-LGTVVYLRQPLNATR 219 (600)
T ss_pred hccCchhhh-cceeEEeeccccccc
Confidence 999987542 234457888887443
No 8
>KOG1264|consensus
Probab=99.68 E-value=1.2e-16 Score=120.10 Aligned_cols=91 Identities=27% Similarity=0.382 Sum_probs=75.8
Q ss_pred hHHHHhcccC-------CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE--CCCC---eEEeCCcccCCHHHHHHHHhh
Q psy8455 3 RIAKTAFPSR-------QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI--DPEG---VVRTKDRMFESVSHLVNYHCQ 70 (101)
Q Consensus 3 R~~a~~~Ll~-------~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~--~~~~---~~~~~~~~F~sl~~LI~~y~~ 70 (101)
|.+|+..|.. +||+||||+|++..|+|+||+..+|++.|++|+ ..+| +|..++..|+||.+||.||+.
T Consensus 544 R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~vfdslY~LI~~Y~~ 623 (1267)
T KOG1264|consen 544 RTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLVFDSLYALIQHYRE 623 (1267)
T ss_pred chHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchhHHHHHHHHHHHHh
Confidence 7785444432 499999999999999999999999999999996 3344 567788999999999999999
Q ss_pred CCcCccccCcceEEcCccccCCCCC
Q psy8455 71 NQLPIISAESALILRNPVAKCATGA 95 (101)
Q Consensus 71 ~~~~l~~~~~~~~L~~Pv~~~~~~~ 95 (101)
+.+ .+....++|..||+++.++.
T Consensus 624 ~~L--r~aeF~m~LtePvPqp~~He 646 (1267)
T KOG1264|consen 624 THL--RCAEFEMRLTEPVPQPNPHE 646 (1267)
T ss_pred ccc--cccceEEEecCCCCCCCccc
Confidence 877 45567899999999887754
No 9
>KOG4278|consensus
Probab=99.65 E-value=5.4e-16 Score=115.23 Aligned_cols=91 Identities=31% Similarity=0.416 Sum_probs=76.8
Q ss_pred CChHHHHhcccC--CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCe-EEeCCcccCCHHHHHHHHhhCCcCcc
Q psy8455 1 MSRIAKTAFPSR--QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGV-VRTKDRMFESVSHLVNYHCQNQLPII 76 (101)
Q Consensus 1 isR~~a~~~Ll~--~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~-~~~~~~~F~sl~~LI~~y~~~~~~l~ 76 (101)
+||.. +|.+|. -+|+||||+|++.+|+|.+|++++|.|.||+|+ +.+|. |......|.+|.|||.||....+++.
T Consensus 159 vSRsa-aEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLi 237 (1157)
T KOG4278|consen 159 VSRSA-AEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLI 237 (1157)
T ss_pred cccch-hhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhcccccccee
Confidence 57887 677774 499999999999999999999999999999997 55664 66667899999999999999988775
Q ss_pred ccCcceEEcCccccCCCCCCC
Q psy8455 77 SAESALILRNPVAKCATGAHT 97 (101)
Q Consensus 77 ~~~~~~~L~~Pv~~~~~~~~~ 97 (101)
++|.+|.++.+.+-..
T Consensus 238 -----ttLhYPApK~nKptvy 253 (1157)
T KOG4278|consen 238 -----TTLHYPAPKKNKPTVY 253 (1157)
T ss_pred -----EeeeccCccCCCCcee
Confidence 7899999987655433
No 10
>KOG1264|consensus
Probab=99.61 E-value=1.8e-15 Score=113.97 Aligned_cols=85 Identities=26% Similarity=0.374 Sum_probs=71.5
Q ss_pred CChHHHHhccc--CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEeCCcccCCHHHHHHHHhhCCcCcccc
Q psy8455 1 MSRIAKTAFPS--RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQLPIISA 78 (101)
Q Consensus 1 isR~~a~~~Ll--~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~~~~~F~sl~~LI~~y~~~~~~l~~~ 78 (101)
.+|++|++.|+ ..||+||||.++. +..|+||++.+|+++|++|...+..|.++...|+|+.+||+||.++++ +
T Consensus 655 ~treqAE~mL~rvp~DGaFLiR~~~~-~nsy~iSfr~~gkikHcRi~rdGr~fvl~t~~FesLv~lv~yY~k~~l--y-- 729 (1267)
T KOG1264|consen 655 LTREQAEDMLMRVPRDGAFLIRKREG-SNSYAISFRARGKIKHCRINRDGRHFVLGTSAFESLVELVSYYEKHPL--Y-- 729 (1267)
T ss_pred ccHHHHHHHHhhCccCcceEEEeccC-CceEEEEEEEcCcEeEEEEccCceEEEeccHHHHHHHHHHHHHhcChh--h--
Confidence 37899777666 3699999995544 678999999999999999987667889999999999999999999876 3
Q ss_pred CcceEEcCccccC
Q psy8455 79 ESALILRNPVAKC 91 (101)
Q Consensus 79 ~~~~~L~~Pv~~~ 91 (101)
..+.|++||+..
T Consensus 730 -R~mkLr~PVnee 741 (1267)
T KOG1264|consen 730 -RKMKLRYPVNEE 741 (1267)
T ss_pred -hcccccCcCCHH
Confidence 468899999753
No 11
>KOG4637|consensus
Probab=99.59 E-value=3.1e-15 Score=104.50 Aligned_cols=91 Identities=26% Similarity=0.354 Sum_probs=73.0
Q ss_pred ChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCeEEeCC-cccCCHHHHHHHHhhCCcCcccc
Q psy8455 2 SRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKD-RMFESVSHLVNYHCQNQLPIISA 78 (101)
Q Consensus 2 sR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~~~~~~-~~F~sl~~LI~~y~~~~~~l~~~ 78 (101)
.|..|++.|. .++|+||||+|. +.|.|+|||..++.|+|+.|. +..|+-+-+. ..+.||.+||.||+..++.-.+.
T Consensus 340 ~r~kAe~llrg~~dGtFLIR~ss-~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe~HnD 418 (464)
T KOG4637|consen 340 NRDKAEELLRGKPDGTFLIRESS-KGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLEQHND 418 (464)
T ss_pred hHHHHHHHhcCCCCCeEEEeecc-CCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHHhhcc
Confidence 4778666554 579999999964 468999999999999999996 6667544333 68899999999999999877666
Q ss_pred CcceEEcCccccCCC
Q psy8455 79 ESALILRNPVAKCAT 93 (101)
Q Consensus 79 ~~~~~L~~Pv~~~~~ 93 (101)
...++|..||.-+.+
T Consensus 419 al~ttLr~Pv~~~~~ 433 (464)
T KOG4637|consen 419 ALTTTLRYPVFAQVT 433 (464)
T ss_pred ccccccccceecccC
Confidence 777899999976533
No 12
>KOG2996|consensus
Probab=99.55 E-value=6.6e-15 Score=107.88 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=76.1
Q ss_pred CChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEe-CCcccCCHHHHHHHHhhCCcCcccc
Q psy8455 1 MSRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRT-KDRMFESVSHLVNYHCQNQLPIISA 78 (101)
Q Consensus 1 isR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~-~~~~F~sl~~LI~~y~~~~~~l~~~ 78 (101)
|-|++|+..|. ..+|+||||.+....+.|++|++++..++|++|.+.+|++.+ +...|.|+.|||+||+.+++...-+
T Consensus 692 MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk 771 (865)
T KOG2996|consen 692 MERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYYQSHSLKEIFK 771 (865)
T ss_pred HhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHHHhccHHHHHH
Confidence 45888655555 469999999998777899999999999999999877898776 4699999999999999999866556
Q ss_pred CcceEEcCcccc
Q psy8455 79 ESALILRNPVAK 90 (101)
Q Consensus 79 ~~~~~L~~Pv~~ 90 (101)
...++|++|...
T Consensus 772 ~LDTtLk~Pyke 783 (865)
T KOG2996|consen 772 ALDTTLKFPYKE 783 (865)
T ss_pred HhhhhhcCCCcC
Confidence 677889999874
No 13
>KOG0197|consensus
Probab=99.53 E-value=3.5e-14 Score=102.52 Aligned_cols=85 Identities=32% Similarity=0.451 Sum_probs=70.0
Q ss_pred CChHHHHhcccC---CCCcEEEEeeCCCCCCEEEEEEeCC------eEEEEEEE-CCCCeEE--eC-CcccCCHHHHHHH
Q psy8455 1 MSRIAKTAFPSR---QDGDFLVRESQGSPGQYVLTGYQGG------TKKHLLLI-DPEGVVR--TK-DRMFESVSHLVNY 67 (101)
Q Consensus 1 isR~~a~~~Ll~---~~G~FLvR~s~~~~g~~~Lsv~~~~------~~~h~~I~-~~~~~~~--~~-~~~F~sl~~LI~~ 67 (101)
|||++|++.|+. ..|+||||+|++.+|.|+||++... .++|++|+ ..+|.+. +. ...|+++.+||+|
T Consensus 88 isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~ 167 (468)
T KOG0197|consen 88 ISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNY 167 (468)
T ss_pred ccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhh
Confidence 799998877773 3599999999999999999999865 89999996 4444333 43 5899999999999
Q ss_pred HhhCCcCccccCcceEEcCcccc
Q psy8455 68 HCQNQLPIISAESALILRNPVAK 90 (101)
Q Consensus 68 y~~~~~~l~~~~~~~~L~~Pv~~ 90 (101)
|+.++.+++ ..|..||..
T Consensus 168 ~~~~~~gl~-----~~l~~p~~~ 185 (468)
T KOG0197|consen 168 YSKNADGLC-----TRLRDPCSK 185 (468)
T ss_pred hhccCcchh-----hcccCchhc
Confidence 999998775 568888875
No 14
>KOG0194|consensus
Probab=99.51 E-value=1.6e-13 Score=99.78 Aligned_cols=89 Identities=28% Similarity=0.417 Sum_probs=72.5
Q ss_pred CChHHHHhcccCCCCcEEEEeeCCCCC---CE-EEEEEeC--CeEEEEEEECCCCeEEeC-CcccCCHHHHHHHHhhCCc
Q psy8455 1 MSRIAKTAFPSRQDGDFLVRESQGSPG---QY-VLTGYQG--GTKKHLLLIDPEGVVRTK-DRMFESVSHLVNYHCQNQL 73 (101)
Q Consensus 1 isR~~a~~~Ll~~~G~FLvR~s~~~~g---~~-~Lsv~~~--~~~~h~~I~~~~~~~~~~-~~~F~sl~~LI~~y~~~~~ 73 (101)
|.|++ ++.||+.+||||||.++..+| .+ +||+.+. .+++||.|+..++++..+ ...|++|.+||.||+.+..
T Consensus 56 l~red-~~~lL~~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~~li~~~~~~~~ 134 (474)
T KOG0194|consen 56 LPRED-AEKLLKNDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTISELVNYYKFSKL 134 (474)
T ss_pred ccHhH-HHHHhCCCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHHHHHHHHHhccc
Confidence 57899 788889999999999988765 23 8999985 788999998545555555 4899999999999999998
Q ss_pred CccccCcceEEcCccccCC
Q psy8455 74 PIISAESALILRNPVAKCA 92 (101)
Q Consensus 74 ~l~~~~~~~~L~~Pv~~~~ 92 (101)
++. .....|+.|+.|+.
T Consensus 135 ~~~--~~~~~L~~PI~r~~ 151 (474)
T KOG0194|consen 135 EIT--GKNFFLKRPIPRQK 151 (474)
T ss_pred cee--ccceeecccccccc
Confidence 874 23447999999865
No 15
>KOG0790|consensus
Probab=99.23 E-value=2.3e-11 Score=87.31 Aligned_cols=92 Identities=20% Similarity=0.385 Sum_probs=70.7
Q ss_pred CChHHHHhcccC--CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEe-CCcccCCHHHHHHHHhhCCcCccc
Q psy8455 1 MSRIAKTAFPSR--QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRT-KDRMFESVSHLVNYHCQNQLPIIS 77 (101)
Q Consensus 1 isR~~a~~~Ll~--~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~-~~~~F~sl~~LI~~y~~~~~~l~~ 77 (101)
|+-.+|++.|.. .+|+||.|.|++.||.|+|+++.++++.|++|+..++.|.+ ++..|.+++|||+||+...-.+..
T Consensus 11 ~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyyme~~~~lke 90 (600)
T KOG0790|consen 11 LSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYMEHHGQLKE 90 (600)
T ss_pred ccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHHhhhHHHHh
Confidence 355675444443 49999999999999999999999999999999865555654 679999999999999887643321
Q ss_pred -cCcceEEcCccccCC
Q psy8455 78 -AESALILRNPVAKCA 92 (101)
Q Consensus 78 -~~~~~~L~~Pv~~~~ 92 (101)
.+.-+-|++|+.=.+
T Consensus 91 kng~~ielK~pl~cAd 106 (600)
T KOG0790|consen 91 KNGDVIELKYPLNCAD 106 (600)
T ss_pred cCCCEEEecCCCccCC
Confidence 234567899886433
No 16
>KOG1930|consensus
Probab=99.22 E-value=3.9e-11 Score=85.19 Aligned_cols=84 Identities=30% Similarity=0.414 Sum_probs=63.9
Q ss_pred CChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeC---------------CeEEEEEEE-CCCCeEEe----CCcccC
Q psy8455 1 MSRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQG---------------GTKKHLLLI-DPEGVVRT----KDRMFE 59 (101)
Q Consensus 1 isR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~---------------~~~~h~~I~-~~~~~~~~----~~~~F~ 59 (101)
|+|++|++.|. +++|+|+||+|.+.+|.|-|.++.. ..|+||.|. ...|. -+ +...|.
T Consensus 219 isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGV-kLKGC~nEP~FG 297 (483)
T KOG1930|consen 219 ISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGV-KLKGCDNEPVFG 297 (483)
T ss_pred CCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCce-eccCCCCCCccc
Confidence 79999998877 5699999999999999999999752 358999997 44553 33 237999
Q ss_pred CHHHHHHHHhhCCcCccccCcceEEcCcccc
Q psy8455 60 SVSHLVNYHCQNQLPIISAESALILRNPVAK 90 (101)
Q Consensus 60 sl~~LI~~y~~~~~~l~~~~~~~~L~~Pv~~ 90 (101)
||..||--|.-..+ ..+|+|.-|-..
T Consensus 298 SLSALV~QHSIt~L-----ALPckL~iP~rD 323 (483)
T KOG1930|consen 298 SLSALVYQHSITAL-----ALPCKLVIPDRD 323 (483)
T ss_pred hhHHHHhhccchhh-----hcceeEeccCCC
Confidence 99999955554444 356778766543
No 17
>KOG3601|consensus
Probab=99.08 E-value=1.7e-11 Score=80.32 Aligned_cols=73 Identities=27% Similarity=0.362 Sum_probs=64.3
Q ss_pred CChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEE-ECCCCeEEeCCcccCCHHHHHHHHhhCCc
Q psy8455 1 MSRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL-IDPEGVVRTKDRMFESVSHLVNYHCQNQL 73 (101)
Q Consensus 1 isR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I-~~~~~~~~~~~~~F~sl~~LI~~y~~~~~ 73 (101)
|+|..|++.|+ +++|+||+|.++..||.|.++++....+.|+++ +...|.|......|.|+.++++||..+..
T Consensus 65 i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~ 139 (222)
T KOG3601|consen 65 IPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQ 139 (222)
T ss_pred cccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCccccc
Confidence 57888766666 579999999999999999999999999999988 46678888888999999999999988764
No 18
>KOG3697|consensus
Probab=99.07 E-value=2.6e-10 Score=77.87 Aligned_cols=69 Identities=67% Similarity=1.066 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEEeCCeEEEEEEECCCCeEEeCCcccCCHHHHHHHHhhCCcCccccCcceEEcCccccC
Q psy8455 23 QGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQLPIISAESALILRNPVAKC 91 (101)
Q Consensus 23 ~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~~~~~F~sl~~LI~~y~~~~~~l~~~~~~~~L~~Pv~~~ 91 (101)
.+.+|+|+|+-...+..+|..+.+++|.....+..|+||..||.||..+.+||.+.++...|.+||.|+
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdpegvvrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECCccceecccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence 345788999999999999999999999888889999999999999999999999999999999999875
No 19
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.23 E-value=1.8e-05 Score=52.99 Aligned_cols=70 Identities=16% Similarity=0.350 Sum_probs=50.3
Q ss_pred CChHHHHhcccC-CCCcEEEEeeCCCCCCEEEEEEe-CCeEEEEEEE--C-CC----C-eEEeCCcccCCHHHHHHHHhh
Q psy8455 1 MSRIAKTAFPSR-QDGDFLVRESQGSPGQYVLTGYQ-GGTKKHLLLI--D-PE----G-VVRTKDRMFESVSHLVNYHCQ 70 (101)
Q Consensus 1 isR~~a~~~Ll~-~~G~FLvR~s~~~~g~~~Lsv~~-~~~~~h~~I~--~-~~----~-~~~~~~~~F~sl~~LI~~y~~ 70 (101)
++-.+|++.|-. ..|+++||.|+.....-+++++. ++...|+-|. . .+ | ...+++..|++|.|||.-|..
T Consensus 44 ~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLDEii~r~V~ 123 (220)
T PF14633_consen 44 FNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLDEIIARHVE 123 (220)
T ss_dssp S-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHHHHHHHCHH
T ss_pred CCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHHHHHHHHHH
Confidence 356787777664 47999999998866667888876 6777899995 2 11 2 467788999999999998844
No 20
>KOG3751|consensus
Probab=98.00 E-value=1.2e-06 Score=64.42 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=58.9
Q ss_pred CChHHHHhcccCC----CCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEE--CCCC-eEE-eC--CcccCCHHHHHHHHhh
Q psy8455 1 MSRIAKTAFPSRQ----DGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI--DPEG-VVR-TK--DRMFESVSHLVNYHCQ 70 (101)
Q Consensus 1 isR~~a~~~Ll~~----~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~--~~~~-~~~-~~--~~~F~sl~~LI~~y~~ 70 (101)
|+|+| ..+++++ +|.|++|+|.+.|..|++++....+++||+|. ..+| .|. .+ ...|.++..|+++|+-
T Consensus 526 is~~e-s~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~~ql~~~~ql 604 (622)
T KOG3751|consen 526 ISRDE-SQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDLIQLVEFYQL 604 (622)
T ss_pred cCchh-hhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccccccccchhhc
Confidence 68888 5556642 89999999999998899999999999999996 3344 333 33 2799999999999998
Q ss_pred CCcCc
Q psy8455 71 NQLPI 75 (101)
Q Consensus 71 ~~~~l 75 (101)
++-++
T Consensus 605 ~k~~l 609 (622)
T KOG3751|consen 605 NKGVL 609 (622)
T ss_pred CCCcc
Confidence 86444
No 21
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=96.61 E-value=0.0082 Score=40.34 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=40.5
Q ss_pred CcEEEEeeCCCCCCEEEEEEeCCeEEEEE--EE-CCCCeEEeCCcccCCHHHHHHHHhhC
Q psy8455 15 GDFLVRESQGSPGQYVLTGYQGGTKKHLL--LI-DPEGVVRTKDRMFESVSHLVNYHCQN 71 (101)
Q Consensus 15 G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~--I~-~~~~~~~~~~~~F~sl~~LI~~y~~~ 71 (101)
-.|.+..+...||.|.|+...+...+|.. |. .++| |.+.+..|+++.+|+.+++.+
T Consensus 161 i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~G-f~~r~~~f~~~~~L~~~FK~~ 219 (220)
T PF14633_consen 161 IPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDG-FRFRKQVFPSLDRLINWFKKH 219 (220)
T ss_dssp -EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSS-EEETTEEESSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCc-EEEecccCCCHHHHHHHHhhc
Confidence 36777778888999999998865544443 64 5566 566889999999999998763
No 22
>KOG4566|consensus
Probab=96.48 E-value=0.0069 Score=41.58 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=51.7
Q ss_pred ChHHHHhcccC-CCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCCeEEe------CC--cccCCHHHHHHHHhhCC
Q psy8455 2 SRIAKTAFPSR-QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRT------KD--RMFESVSHLVNYHCQNQ 72 (101)
Q Consensus 2 sR~~a~~~Ll~-~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~~~~~------~~--~~F~sl~~LI~~y~~~~ 72 (101)
+.++|++.|-+ ..|.|+||++...+-.+.|++....+.+..+|...++.|.. .. ..|+++..++.+|....
T Consensus 60 ~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~~~~~~~y~~~~ 139 (258)
T KOG4566|consen 60 TANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDVEVLIHHYRQSR 139 (258)
T ss_pred cchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhHHHHHHhhhhhh
Confidence 34564455543 47999999998877788999999888888888644443332 22 58999999999995544
No 23
>KOG1856|consensus
Probab=96.13 E-value=0.015 Score=46.99 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=49.9
Q ss_pred ChHHHHhccc-CCCCcEEEEeeCCCCCCEEEEEEe-CCeEEEEEEE--CCC------CeEEeCCcccCCHHHHHHHHhh
Q psy8455 2 SRIAKTAFPS-RQDGDFLVRESQGSPGQYVLTGYQ-GGTKKHLLLI--DPE------GVVRTKDRMFESVSHLVNYHCQ 70 (101)
Q Consensus 2 sR~~a~~~Ll-~~~G~FLvR~s~~~~g~~~Lsv~~-~~~~~h~~I~--~~~------~~~~~~~~~F~sl~~LI~~y~~ 70 (101)
+-++|+..|- ...|.++||.|+.....-+++++. ++...|+-|+ ..+ +..++++..|..|.++|.-|..
T Consensus 1115 n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDEiI~r~vq 1193 (1299)
T KOG1856|consen 1115 NAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDEIIARYVQ 1193 (1299)
T ss_pred CHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHHHHHHHHH
Confidence 4456555444 468999999998866667777776 4667888886 222 2456678999999999988854
No 24
>KOG1856|consensus
Probab=96.03 E-value=0.025 Score=45.76 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=51.9
Q ss_pred hHHHHhccc----CCCCcEE---EEeeCCCCCCEEEEEEeCCeEEEEEEE-CCCCeEEeCCcccCCHHHHHHHHhhCC
Q psy8455 3 RIAKTAFPS----RQDGDFL---VRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYHCQNQ 72 (101)
Q Consensus 3 R~~a~~~Ll----~~~G~FL---vR~s~~~~g~~~Lsv~~~~~~~h~~I~-~~~~~~~~~~~~F~sl~~LI~~y~~~~ 72 (101)
+++ .+.+| ..++.+. ...|...||.|.|+.+.+.+++|--|. .++| |.+.+..|+++.+|..|++.+-
T Consensus 1213 ~~~-~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g-~~~rg~~f~tld~L~~~FK~h~ 1288 (1299)
T KOG1856|consen 1213 KKE-VEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEG-FRFRGQNFGTLDELCRWFKRHY 1288 (1299)
T ss_pred HHH-HHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccc-eEEecccchhHHHHHHHHHHHh
Confidence 445 55555 2355444 457888899999999999999998775 5555 6678899999999999998764
No 25
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=89.99 E-value=2.3 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHhccc---CCCCcEEEEeeCCCCCCEEEEEEeC
Q psy8455 4 IAKTAFPS---RQDGDFLVRESQGSPGQYVLTGYQG 36 (101)
Q Consensus 4 ~~a~~~Ll---~~~G~FLvR~s~~~~g~~~Lsv~~~ 36 (101)
+|..++|- .++|+|+.|-|++.-|++++-....
T Consensus 12 devk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 12 DEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp HHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred HHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 44344443 5799999999999999998876553
No 26
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=82.90 E-value=3.1 Score=23.78 Aligned_cols=25 Identities=36% Similarity=0.633 Sum_probs=19.5
Q ss_pred CCCcEEEEeeCCCCCCEEEEEEeCC
Q psy8455 13 QDGDFLVRESQGSPGQYVLTGYQGG 37 (101)
Q Consensus 13 ~~G~FLvR~s~~~~g~~~Lsv~~~~ 37 (101)
.+|.|.|.-....+|.|.+++.+++
T Consensus 54 ~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 54 GDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCCEEEEEEEeCCCEeEEEEEEECC
Confidence 5788888877777788888887765
No 27
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=74.21 E-value=4.8 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=16.1
Q ss_pred CCCcEEEEeeCCCCCCEEEEEEeCC
Q psy8455 13 QDGDFLVRESQGSPGQYVLTGYQGG 37 (101)
Q Consensus 13 ~~G~FLvR~s~~~~g~~~Lsv~~~~ 37 (101)
.+|.|.|.-....+|.|.|+|.+++
T Consensus 68 ~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 68 GDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp SSSEEEEEEEESSSEEEEEEEEESS
T ss_pred CCCEEEEEEEeCccEeEEEEEEECC
Confidence 4666776666666666666666654
No 28
>KOG3667|consensus
Probab=74.07 E-value=8.5 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=28.2
Q ss_pred CChHHHHhccc--CCCCcEEEEeeCCCCCCEEEEEEeCCe-EEEEEEE
Q psy8455 1 MSRIAKTAFPS--RQDGDFLVRESQGSPGQYVLTGYQGGT-KKHLLLI 45 (101)
Q Consensus 1 isR~~a~~~Ll--~~~G~FLvR~s~~~~g~~~Lsv~~~~~-~~h~~I~ 45 (101)
|+++. +..++ +++|+|++|-|++.-|..++......+ ..|+.|.
T Consensus 570 inkq~-~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 570 INKQQ-ERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred cchhh-hhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence 34555 34444 579999999998876766665554322 2577775
No 29
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=58.46 E-value=35 Score=21.40 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEEeCCeEEEEEEECCCCeEEeCCcccCCHHHHHHH
Q psy8455 31 LTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNY 67 (101)
Q Consensus 31 Lsv~~~~~~~h~~I~~~~~~~~~~~~~F~sl~~LI~~ 67 (101)
|.--++|..+.+.|. .+| |..++..|.||..+=..
T Consensus 87 LvREw~G~~h~V~V~-~dG-fey~Gr~y~SLSaIAr~ 121 (136)
T PF11149_consen 87 LVREWNGREHEVTVL-EDG-FEYQGRRYKSLSAIARA 121 (136)
T ss_pred EEEEECCEEEEEEEe-CCC-EEECCccccCHHHHHHH
Confidence 333345555555554 456 88899999999987544
No 30
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=54.47 E-value=16 Score=22.13 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred ccCCCCcEEEEeeCCCCCCEEEEEEeCCe-EEEEEEE
Q psy8455 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGT-KKHLLLI 45 (101)
Q Consensus 10 Ll~~~G~FLvR~s~~~~g~~~Lsv~~~~~-~~h~~I~ 45 (101)
.+++||+|.+++-.. |.|.|.+.+..- ...++|.
T Consensus 25 ~v~~dG~F~f~~Vp~--GsY~L~V~s~~~~F~~~RVd 59 (123)
T PF09430_consen 25 FVRSDGSFVFHNVPP--GSYLLEVHSPDYVFPPYRVD 59 (123)
T ss_pred EecCCCEEEeCCCCC--ceEEEEEECCCccccCEEEE
Confidence 346799999997755 789999876432 3335553
No 31
>KOG1785|consensus
Probab=54.29 E-value=21 Score=26.62 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCCCcEEEEeeCCCCCCEEEEEEe-CCeE
Q psy8455 12 RQDGDFLVRESQGSPGQYVLTGYQ-GGTK 39 (101)
Q Consensus 12 ~~~G~FLvR~s~~~~g~~~Lsv~~-~~~~ 39 (101)
.++|+|+.|-|.+..|++++-... +|.+
T Consensus 277 ~KpGSYIFRlSCTRlGQWAIGYVt~dG~I 305 (563)
T KOG1785|consen 277 KKPGSYIFRLSCTRLGQWAIGYVTADGNI 305 (563)
T ss_pred cCCCceEEeeccCcccceeEEEEcCCCce
Confidence 579999999999999999987655 4443
No 32
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=50.77 E-value=43 Score=18.61 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=13.3
Q ss_pred cccCCHHHHHHHHhhCC
Q psy8455 56 RMFESVSHLVNYHCQNQ 72 (101)
Q Consensus 56 ~~F~sl~~LI~~y~~~~ 72 (101)
..-.+|.++|+.|.+..
T Consensus 33 ~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 33 TYVGPLDDVVETYIKLK 49 (72)
T ss_pred eeeccHHHHHHHHHhcc
Confidence 34478999999998764
No 33
>PF13983 YsaB: YsaB-like lipoprotein
Probab=50.38 E-value=34 Score=18.92 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCcEEEEeeCCCCCCEEEEEEeCCeEEEEE
Q psy8455 14 DGDFLVRESQGSPGQYVLTGYQGGTKKHLL 43 (101)
Q Consensus 14 ~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~ 43 (101)
.|+|-+|........|+-|+-.+|...|..
T Consensus 46 QgSYEm~G~T~r~E~FvCSFD~dGqFLHLS 75 (77)
T PF13983_consen 46 QGSYEMRGYTARKEGFVCSFDADGQFLHLS 75 (77)
T ss_pred ccceEeecccccccceEEeECCCCcEEEee
Confidence 699999977766556999998888888864
No 34
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=43.63 E-value=17 Score=19.62 Aligned_cols=15 Identities=47% Similarity=0.466 Sum_probs=12.9
Q ss_pred CCCCcEE-EEeeCCCC
Q psy8455 12 RQDGDFL-VRESQGSP 26 (101)
Q Consensus 12 ~~~G~FL-vR~s~~~~ 26 (101)
..+|..+ ||.|.+.|
T Consensus 32 ~~dG~~l~vR~SgTEP 47 (73)
T PF00408_consen 32 FEDGWRLLVRPSGTEP 47 (73)
T ss_dssp ETTEEEEEEEEESSSS
T ss_pred CCCceEEEEECCCCCc
Confidence 4689999 99999876
No 35
>KOG0518|consensus
Probab=41.04 E-value=41 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCcEEEEeeCCCCCCEEEEEEeC
Q psy8455 13 QDGDFLVRESQGSPGQYVLTGYQG 36 (101)
Q Consensus 13 ~~G~FLvR~s~~~~g~~~Lsv~~~ 36 (101)
.+|.|-||-....+|.|+|+|.++
T Consensus 905 ~~~~y~vrFtP~e~G~~tl~V~y~ 928 (1113)
T KOG0518|consen 905 GQGTYQVRFTPKEPGNHTLSVKYK 928 (1113)
T ss_pred CCceEEEEecCCCCCceEEEEEec
Confidence 478999999999999999999885
No 36
>PF14822 Vasohibin: Vasohibin
Probab=38.68 E-value=72 Score=22.02 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=34.9
Q ss_pred CEEEEEEe---CCeEEEEEEE-CCCCeEE-e---------C-CcccCCHHHHHHHHhhCCcCccccCcceEEcCcccc
Q psy8455 28 QYVLTGYQ---GGTKKHLLLI-DPEGVVR-T---------K-DRMFESVSHLVNYHCQNQLPIISAESALILRNPVAK 90 (101)
Q Consensus 28 ~~~Lsv~~---~~~~~h~~I~-~~~~~~~-~---------~-~~~F~sl~~LI~~y~~~~~~l~~~~~~~~L~~Pv~~ 90 (101)
.|.++++. +...+|+.+- ..+|.|- + . ...|+|+.+||.-|+..-......-....+..||+.
T Consensus 132 Rfpi~Fks~~~g~~~~HIVL~v~~~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~sY~~~~H~l~kvkiGlpV~H 209 (246)
T PF14822_consen 132 RFPISFKSQFSGRVFRHIVLGVRCGGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKESYEKYGHTLKKVKIGLPVPH 209 (246)
T ss_pred EeeceeEEEEcCcEEEEEEEEEEECCeecccccccchhhcccchhhHHHHHHHHHHHHHHHHhCeEEEEEecccccCC
Confidence 36777765 3445666552 3345441 2 1 258999999999886543222122234455566654
No 37
>KOG2293|consensus
Probab=35.42 E-value=75 Score=24.49 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=36.9
Q ss_pred CChHHHHhcccCCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEE-E-CCCCeEEeCC--cccCCHHHHHHHHhhCC
Q psy8455 1 MSRIAKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL-I-DPEGVVRTKD--RMFESVSHLVNYHCQNQ 72 (101)
Q Consensus 1 isR~~a~~~Ll~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I-~-~~~~~~~~~~--~~F~sl~~LI~~y~~~~ 72 (101)
|||.+| ..-|+++|+|-|-.- |.|.+.|. ++.+.|=.+ . ..+....+.+ -.|..-.++|.-|....
T Consensus 474 ISRRQa-~IkL~n~GsF~IkNl----GK~~I~vn-g~~l~~gq~~~L~~nclveIrg~~FiF~~N~~~v~~~l~~~ 543 (547)
T KOG2293|consen 474 ISRRQA-LIKLKNDGSFFIKNL----GKRSILVN-GGELDRGQKVILKNNCLVEIRGLRFIFEINQEAVGQYLKEN 543 (547)
T ss_pred eeccce-eEEeccCCcEEeccC----cceeEEeC-CccccCCceEEeccCcEEEEccceEEEeecHHHHHHHHHhc
Confidence 566663 333468999987544 66777763 333333222 1 2233344444 35566678888886654
No 38
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=32.13 E-value=93 Score=17.55 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=8.4
Q ss_pred EEEeeCCCCCCEEEEE
Q psy8455 18 LVRESQGSPGQYVLTG 33 (101)
Q Consensus 18 LvR~s~~~~g~~~Lsv 33 (101)
-||.|+-..|.|+..+
T Consensus 29 siRkSEl~d~~~iV~L 44 (79)
T PF09625_consen 29 SIRKSELRDGVYIVQL 44 (79)
T ss_dssp EEEE-SS-TTEEEEEE
T ss_pred HHHHhhcccceEEEEE
Confidence 4677766666565554
No 39
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=30.10 E-value=45 Score=18.22 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=13.8
Q ss_pred HhcccCCCCcEEEEeeCC
Q psy8455 7 TAFPSRQDGDFLVRESQG 24 (101)
Q Consensus 7 ~~~Ll~~~G~FLvR~s~~ 24 (101)
..++|.++|-|++|..-+
T Consensus 12 ~ik~Le~~Gf~~vrqkGS 29 (66)
T COG1724 12 VIKALEKDGFQLVRQKGS 29 (66)
T ss_pred HHHHHHhCCcEEEEeecc
Confidence 455668899999997644
No 40
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=29.41 E-value=48 Score=13.80 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=13.3
Q ss_pred CcccCCHHHHHHHHhhC
Q psy8455 55 DRMFESVSHLVNYHCQN 71 (101)
Q Consensus 55 ~~~F~sl~~LI~~y~~~ 71 (101)
+..|.+..+|++|-+..
T Consensus 8 ~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 8 GKTFSSLSALREHKRSH 24 (27)
T ss_dssp TEEESSHHHHHHHHCTT
T ss_pred CCccCChhHHHHHhHHh
Confidence 46899999999986443
No 41
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=29.30 E-value=86 Score=16.70 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCCcEEEEeeCCCCCCEEEEEEeCCe
Q psy8455 13 QDGDFLVRESQGSPGQYVLTGYQGGT 38 (101)
Q Consensus 13 ~~G~FLvR~s~~~~g~~~Lsv~~~~~ 38 (101)
.+|.|.++.-.. |.|.|.+...+.
T Consensus 36 ~~G~f~~~~l~~--g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 36 SDGRFSFEGLPP--GTYTLRVSAPGY 59 (82)
T ss_dssp TTSEEEEEEE-S--EEEEEEEEBTTE
T ss_pred CCceEEEEccCC--EeEEEEEEECCc
Confidence 478888775544 677777766543
No 42
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=28.80 E-value=1.2e+02 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=10.3
Q ss_pred CCcEEEEeeCCCC---CCEEEEEEe
Q psy8455 14 DGDFLVRESQGSP---GQYVLTGYQ 35 (101)
Q Consensus 14 ~G~FLvR~s~~~~---g~~~Lsv~~ 35 (101)
.|.|+|-.+...| |.|.|.|..
T Consensus 117 pG~YvIIPsT~~p~~~g~F~LrVfs 141 (150)
T cd00214 117 PGEYVIVPSTFEPGEEGEFLLRVFS 141 (150)
T ss_pred CCCEEEEeeecCCCCcccEEEEEEe
Confidence 4555555554332 345555443
No 43
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=27.62 E-value=1.9e+02 Score=21.09 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=28.9
Q ss_pred cEEEEeeCCCCCCEEEEEEe----CCeEEEEEEECCCCeEEeCCcccCCHHHH
Q psy8455 16 DFLVRESQGSPGQYVLTGYQ----GGTKKHLLLIDPEGVVRTKDRMFESVSHL 64 (101)
Q Consensus 16 ~FLvR~s~~~~g~~~Lsv~~----~~~~~h~~I~~~~~~~~~~~~~F~sl~~L 64 (101)
+|+|.+.+. |.-+|.+.. .|...-|-+...+++|.+.+..|+.+..+
T Consensus 63 dy~VCEKsD--GvR~Ll~vte~p~tg~~~~y~~DR~nnfY~v~~~f~p~~~~~ 113 (404)
T COG5226 63 DYLVCEKSD--GVRALLLVTEEPVTGAFRGYFYDRRNNFYEVHTSFPPCSTVL 113 (404)
T ss_pred CeEEEEccC--CeEEEEEEEecccCCCcceEEEeccCceEEeccccCCccccc
Confidence 688887654 555555544 24555566656677787776666644443
No 44
>smart00720 calpain_III calpain_III.
Probab=27.12 E-value=1.4e+02 Score=18.04 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=4.7
Q ss_pred CCcEEEEeeC
Q psy8455 14 DGDFLVRESQ 23 (101)
Q Consensus 14 ~G~FLvR~s~ 23 (101)
.|.|+|=.+.
T Consensus 112 ~G~Y~iVPsT 121 (143)
T smart00720 112 PGEYVIVPST 121 (143)
T ss_pred CCCEEEEEee
Confidence 3445554443
No 45
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=27.01 E-value=1.4e+02 Score=18.49 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=11.9
Q ss_pred EEeeCCCCCCEEEEEEeC
Q psy8455 19 VRESQGSPGQYVLTGYQG 36 (101)
Q Consensus 19 vR~s~~~~g~~~Lsv~~~ 36 (101)
||+++..++.|.|.++..
T Consensus 80 I~DtE~c~~aF~L~~R~p 97 (129)
T cd01229 80 IRDTEDCHNAFALLVRPP 97 (129)
T ss_pred eeccccccceeEEEEeCC
Confidence 356666667777777753
No 46
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=26.86 E-value=1e+02 Score=18.51 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=12.2
Q ss_pred CCCcEEEEeeCCCC---CCEEEEEEeC
Q psy8455 13 QDGDFLVRESQGSP---GQYVLTGYQG 36 (101)
Q Consensus 13 ~~G~FLvR~s~~~~---g~~~Lsv~~~ 36 (101)
+.|+|+|=.|...+ |.|.|.+...
T Consensus 115 ~~G~YvIVPsT~~~~~~g~F~L~v~s~ 141 (147)
T PF01067_consen 115 PPGTYVIVPSTYEPGQEGEFTLRVFSD 141 (147)
T ss_dssp -SEEEEEEEEESSTT--EEEEEEEEES
T ss_pred CCCCEEEEEecCCCCCeeeEEEEEEEC
Confidence 35666666554333 3456655543
No 47
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=25.60 E-value=1.1e+02 Score=20.72 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=15.2
Q ss_pred CCCcEEEEeeCCCCCCEEEEEEe
Q psy8455 13 QDGDFLVRESQGSPGQYVLTGYQ 35 (101)
Q Consensus 13 ~~G~FLvR~s~~~~g~~~Lsv~~ 35 (101)
++|.||+|.... +.|++..+.
T Consensus 144 ~pG~YLLrh~~~--d~f~~i~k~ 164 (220)
T PF10505_consen 144 QPGSYLLRHTPG--DSFVLIYKS 164 (220)
T ss_pred CCCcEEEEecCC--CCcEEEEEc
Confidence 699999998873 456665554
No 48
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=23.50 E-value=78 Score=17.44 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=13.9
Q ss_pred CChHHHHhcccCCCCcEEEEe
Q psy8455 1 MSRIAKTAFPSRQDGDFLVRE 21 (101)
Q Consensus 1 isR~~a~~~Ll~~~G~FLvR~ 21 (101)
|+.++ ++.|.-++|.|.==+
T Consensus 13 ms~~d-a~~l~~~dg~~v~ve 32 (71)
T PF06130_consen 13 MSPED-AEKLFGQDGQFVSVE 32 (71)
T ss_pred CCHHH-HHHhCCCCCCEEEEE
Confidence 57778 677777888887433
No 49
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=23.02 E-value=69 Score=18.41 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=14.1
Q ss_pred cccCCHHHHHHHHhhCCc
Q psy8455 56 RMFESVSHLVNYHCQNQL 73 (101)
Q Consensus 56 ~~F~sl~~LI~~y~~~~~ 73 (101)
..-.++++||.+|.+.+-
T Consensus 7 tK~rni~eLi~fY~ky~~ 24 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSP 24 (85)
T ss_pred HHHhhHHHHHHHHHHcCc
Confidence 355789999999987654
No 50
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=22.97 E-value=69 Score=17.11 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.3
Q ss_pred HHHHHHHhhCCcC
Q psy8455 62 SHLVNYHCQNQLP 74 (101)
Q Consensus 62 ~~LI~~y~~~~~~ 74 (101)
.||.+||+..+.+
T Consensus 51 ~eLF~yY~~~s~~ 63 (64)
T PF08350_consen 51 EELFEYYKKRSEP 63 (64)
T ss_pred HHHHHHHHHhCcc
Confidence 5799999987654
No 51
>PRK04081 hypothetical protein; Provisional
Probab=22.63 E-value=2.5e+02 Score=18.88 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=26.5
Q ss_pred CCCCcEEEEeeCCCCCCEEEEEEeCCeEEEEEEECCCC
Q psy8455 12 RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEG 49 (101)
Q Consensus 12 ~~~G~FLvR~s~~~~g~~~Lsv~~~~~~~h~~I~~~~~ 49 (101)
++.|.|+|-+-.. ||.|.+.=-....-.++.|++.+|
T Consensus 45 ~kqGafviIeE~a-~G~YKI~eE~Ps~~Trvilr~~dG 81 (207)
T PRK04081 45 QQQGAFVIIEEQA-DGSYKILEEYPSSETRVVLRDLDG 81 (207)
T ss_pred hhcCcEEEEEecC-CCceEeeeecCCCcceEEEecCCC
Confidence 3689999987755 788877665555566777776555
No 52
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=21.95 E-value=93 Score=15.08 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=8.5
Q ss_pred CCCCCEEEEEEe
Q psy8455 24 GSPGQYVLTGYQ 35 (101)
Q Consensus 24 ~~~g~~~Lsv~~ 35 (101)
++||.|.|.++.
T Consensus 10 T~PG~Y~l~~~a 21 (41)
T TIGR03769 10 TKPGTYTLTVQA 21 (41)
T ss_pred CCCeEEEEEEEE
Confidence 357888887765
No 53
>PF09634 DUF2025: Protein of unknown function (DUF2025); InterPro: IPR018595 This protein is produced from gene PA1123 in Pseudomonas. It appears to be present in the biofilm layer and may be a lipoprotein. It contains three alpha helices and six beta strands and is thought to be monomeric.; PDB: 2HG6_A.
Probab=21.91 E-value=50 Score=19.32 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=13.6
Q ss_pred HHhccc------CCCCcEEEEeeCCCCC
Q psy8455 6 KTAFPS------RQDGDFLVRESQGSPG 27 (101)
Q Consensus 6 a~~~Ll------~~~G~FLvR~s~~~~g 27 (101)
|+++|. .+.|.++||-|+..-|
T Consensus 11 AADqLkGFVGfn~KtG~~ivRFSEDsFG 38 (106)
T PF09634_consen 11 AADQLKGFVGFNRKTGQHIVRFSEDSFG 38 (106)
T ss_dssp GGGS---EEEEETTTTEEEEES-GGG-S
T ss_pred HHHHhcccccccccCceEEEEecccccC
Confidence 456664 3689999999987544
No 54
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.07 E-value=66 Score=23.10 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCCcEEEEeeCC---CCCCEEEEE-EeCCeEEEEEEECCCCeEEeCCcccCCHHHHHHHHhhC
Q psy8455 12 RQDGDFLVRESQG---SPGQYVLTG-YQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71 (101)
Q Consensus 12 ~~~G~FLvR~s~~---~~g~~~Lsv-~~~~~~~h~~I~~~~~~~~~~~~~F~sl~~LI~~y~~~ 71 (101)
.+.|+||||.--. ..|...+-= ...+....|++++.. ..-+.+.=++++|...
T Consensus 261 ~~qGDFlIR~lLG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~-------as~~dL~~l~er~~~e 317 (389)
T COG4398 261 PGQGDFLIRGLLGADPSTGAIAIGEVVRVGATLQFQVRDAA-------AADKDLRLLVERAAAE 317 (389)
T ss_pred CCCCceEeeeccccCCCCCceeecceeccCcEEEEEEcccc-------cchhHHHHHHHHHHhh
Confidence 4689999996532 234333311 123444555554321 2234566678888763
Done!