RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8455
(101 letters)
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 106 bits (267), Expect = 7e-32
Identities = 54/79 (68%), Positives = 62/79 (78%)
Query: 12 RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
+ +GDFLVRES +PGQYVLTG Q G KHLLL+DPEGVVRTKD FESVSHL++YH N
Sbjct: 24 QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDN 83
Query: 72 QLPIISAESALILRNPVAK 90
LPIISA S L L+ PV +
Sbjct: 84 HLPIISAGSELCLQQPVER 102
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 97.8 bits (244), Expect = 3e-28
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 12 RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
++ GDFLVRES G PG+YVL+ Y G ++H ++ + + R + F ++ L+++H
Sbjct: 34 KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLIDHHYTT 93
Query: 72 QLPIISAESALILRNPVAK 90
+ I+ +S ++L NP+ K
Sbjct: 94 KQV-ITKKSGVVLLNPIPK 111
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 91.3 bits (227), Expect = 2e-25
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVR-TKDRMF 58
M R A++ +R DG FLVR+ ++ ++ KH+ ++ EG+ R T+ + F
Sbjct: 33 MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAF 92
Query: 59 ESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
++ LV ++ QN L L+ P +
Sbjct: 93 RGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 89.3 bits (222), Expect = 5e-25
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 7 TAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL-IDPEGVVRTKDRMFESVSHLV 65
+ G FLVR+S+ G+ VLT G KHL L ++ G R + F+S+ ++
Sbjct: 26 LEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDML 85
Query: 66 NYHCQNQLPIISA-ESALILRNPV 88
+ + +P+ S S ++L + V
Sbjct: 86 EHFRVHPIPLESGGSSDVVLVSYV 109
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 89.4 bits (222), Expect = 7e-25
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 12 RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
GDFLVRESQ +YVL+ G +H ++ + + R + F S+ L+++
Sbjct: 33 VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLST 91
Query: 72 QLPIISAESALILRNPVAK 90
Q P ++ +S ++L V
Sbjct: 92 QQP-LTKKSGVVLHRAVPS 109
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 83.8 bits (208), Expect = 8e-23
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQ 72
+GDFL+R+S+ SP + ++ G KH + + V R F ++ LV ++ +
Sbjct: 26 VEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAP 85
Query: 73 LPIISAESALILRNPV 88
+ L L +
Sbjct: 86 IFTSEHGEKLYLVRAL 101
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 80.4 bits (199), Expect = 3e-21
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGS-PGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRM- 57
+SR DG FLVR++ G Y LT +GG K + + +G D +
Sbjct: 18 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLT 77
Query: 58 FESVSHLVNYHCQNQLPIISAESALILRNPVAKC 91
F SV L+N++ L + + + L PV+K
Sbjct: 78 FSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 79.6 bits (197), Expect = 5e-21
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFESVSHLVNYH 68
R DG FL+RES+ +PG + L+ G +H +L D G F S++ LV+YH
Sbjct: 24 KQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH 83
Query: 69 CQNQLPIISAESALILRNPV 88
+ L V
Sbjct: 84 RSTSVSRNQQIF-LRDIEQV 102
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex;
HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB:
1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A*
1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 78.4 bits (194), Expect = 9e-21
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFESVSHLVNYH 68
R DG FL+RES+ +PG + L+ G +H +L D G F S++ LV+YH
Sbjct: 21 KQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH 80
Query: 69 CQNQLPIISAESALILRN 86
+S + LR+
Sbjct: 81 RSTS---VSRNQQIFLRD 95
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 77.7 bits (192), Expect = 2e-20
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMF 58
+SR A+T ++ G FLVR+S PG YVL+ + H ++ P + D+ F
Sbjct: 26 VSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEF 85
Query: 59 ESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
+ + L+ ++ + L + L P +
Sbjct: 86 DHLPALLEFYKIHYLDTTT------LIEPAPR 111
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 73.1 bits (180), Expect = 2e-18
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL--IDPEGVVRTKDRMFESVSHLVNY 67
Q G FL+RES+ G + L+ G KH + +D G T+ ++F +++ VNY
Sbjct: 35 SENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNY 94
Query: 68 HCQNQLPIISAESALILRNPVAK 90
+ + L P K
Sbjct: 95 YTTTSDGLCVK-----LEKPCLK 112
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 75.6 bits (185), Expect = 8e-18
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQ-GSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRM- 57
+SR DG FLVR++ G Y LT +GG K + + +G D +
Sbjct: 17 ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLT 76
Query: 58 FESVSHLVNYHCQNQLPIISAESALILRNPVAKC 91
F SV L+N++ L + + + L PV+K
Sbjct: 77 FSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 110
Score = 46.7 bits (110), Expect = 1e-07
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPE--GVVRTKDRM 57
+R A+ ++DG FLVRES G Y + G KH ++ +
Sbjct: 308 SNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNL 366
Query: 58 FESVSHL 64
+ S+ L
Sbjct: 367 YSSLKEL 373
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 69.9 bits (172), Expect = 2e-17
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYHC 69
+ G F++R SQ SPG + ++ +H ++ D +G F S++ LV+Y+
Sbjct: 27 GKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYR 86
Query: 70 QNQLPIISAESALILRN 86
IS + + LR+
Sbjct: 87 TTS---ISKQKQVFLRD 100
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 68.5 bits (168), Expect = 8e-17
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVR-TKDRMFESVSHLVNYHCQN 71
DG FL R S+ +PG + L+ + G H+ + + F +++ LV Y+ ++
Sbjct: 28 VDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEH 87
Query: 72 QLPIISAESALI-LRNPVAK 90
+ +I L+ P+
Sbjct: 88 HGQLKEKNGDVIELKYPLNC 107
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 69.1 bits (169), Expect = 9e-17
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPE--GVVR---TKDRMFESVSHL 64
+DG FLVRES+ P Y L+ ++ G +H + GV++ T + F S+ L
Sbjct: 46 TGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYAL 105
Query: 65 VNYHCQNQLPIISAESALILRNPVAK-CATGAHTG 98
+ ++ + + AE L L +PV +G +G
Sbjct: 106 IQHYREA--HLRCAEFELRLTDPVPNPNPSGPSSG 138
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 67.2 bits (164), Expect = 3e-16
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 25/109 (22%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL--------------- 44
+SR A ++ G FLVR+S SPG YVL+ + H ++
Sbjct: 7 LSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQ 66
Query: 45 ---IDPEGVVRTKDRMFESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
+R D+ F+S+ L+ ++ + L + L PV++
Sbjct: 67 PPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTT------LIEPVSR 109
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 68.0 bits (166), Expect = 3e-16
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQ--YVLTGYQGGTKKHLLLIDPE-------GVVRTKDRMFES 60
S +DG FL+R+S G + Y L + ++ + E G + + F S
Sbjct: 41 RSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGS 100
Query: 61 VSHLVNYHCQNQLPIISAES----ALILRNPVAKCA 92
V +VN H N L +I +++ + L+ V +
Sbjct: 101 VVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSS 136
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.0 bits (159), Expect = 2e-15
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVR-TKDRMF 58
M R S G +L+RE ++ ++ KH+ +++ + + T+ + F
Sbjct: 23 MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKF 82
Query: 59 ESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
+S+ LV Y+ + L + L+ P +
Sbjct: 83 DSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 64.6 bits (158), Expect = 3e-15
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTK------DRMFESVSH 63
DG FLVRESQ +P +VL+ KH L++ E R F +
Sbjct: 33 QGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQ 92
Query: 64 LVNYHCQNQ--LPIISAESALILRNPVAKCA 92
LV +H N+ LP +LR+ + A
Sbjct: 93 LVEFHQLNRGILPC-------LLRHCCTRVA 116
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 64.6 bits (158), Expect = 4e-15
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYH 68
Q FLVR S +PG Y L + + P R + S+ +++++
Sbjct: 34 TVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHY 93
Query: 69 CQNQLPIISAESALILRNPVAK 90
+ Q+ L+ PV
Sbjct: 94 RKEQI-----VEGYYLKEPVPM 110
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 62.6 bits (153), Expect = 2e-14
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFESVSHLVNYHC 69
+ G FLVRES PG Y L G +H ++ + ++ FE++ LV ++
Sbjct: 26 PPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYT 85
Query: 70 QNQLPIISAESALILRNPVAK 90
+ + + L P
Sbjct: 86 SDADGLCTR-----LIKPKVM 101
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 62.7 bits (153), Expect = 2e-14
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT-----GYQGGTKKH--LLLIDPEGVVRTKDRMFESVS 62
G FL+RES+ + G Y L+ +G KH + +D G T FE++
Sbjct: 24 FGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQ 83
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
LV ++ + +A + L P K
Sbjct: 84 QLVQHYSER-----AAGLSSRLVVPSHK 106
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 65.0 bits (159), Expect = 4e-14
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 12 RQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
GDFLVRESQ +YVL+ G +H ++ + + R + F S+ L+++
Sbjct: 30 VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLST 88
Query: 72 QLPIISAESALILRNPVAK 90
Q P+ +S ++L V K
Sbjct: 89 QQPLTK-KSGVVLHRAVPK 106
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 63.4 bits (154), Expect = 8e-14
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQ 72
+DG FLVR+ P Y ++ G KH + V + F+S+ L++Y+ ++
Sbjct: 143 RDGAFLVRKRN-EPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHP 201
Query: 73 LPIISAESALILRNPVAK 90
L + LR P+ +
Sbjct: 202 LYRK-----MKLRYPINE 214
Score = 49.9 bits (119), Expect = 8e-09
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-----DPEGVVRTKDRMFESVSHL 64
DG FLVRES+ G Y L+ ++ G +H + T + +F+S+ L
Sbjct: 32 TGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDL 91
Query: 65 VNYHCQNQL 73
+ ++ Q L
Sbjct: 92 ITHYQQVPL 100
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 59.6 bits (145), Expect = 2e-13
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVRTK------DRMFESVSH 63
DG FL+R+SQ +P +VLT K+ ++ E +T + F +
Sbjct: 24 QGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQ 83
Query: 64 LVNYHCQNQLPIISAESALILRNPVAK 90
LV+++ N+ + L++ +
Sbjct: 84 LVDFYQLNKGVLPCK-----LKHHCIR 105
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 59.1 bits (144), Expect = 3e-13
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFESVSHLVNYHC 69
+DG FLVRES PG YVL G H +L + + F ++ +V ++
Sbjct: 23 PPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYS 82
Query: 70 QNQLPIISAESALILRNPVAK 90
+++ I + L P K
Sbjct: 83 KDKGAICTK-----LVRPKRK 98
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 62.1 bits (151), Expect = 6e-13
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH--LLLIDPEGVVRTKDRM 57
+SR A+ S +G FLVRES+ SPGQ ++ G H + + + +
Sbjct: 112 VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 171
Query: 58 FESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
F +++ LV++H +I+ L P K
Sbjct: 172 FNTLAELVHHHSTVADGLITT-----LHYPAPK 199
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 58.1 bits (141), Expect = 2e-12
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEG------VVRTKDRMFESVSH 63
DG FLVR+SQ +P +VL+ G KH +I E + F +
Sbjct: 45 QGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQ 104
Query: 64 LVNYHCQNQLPIISAESALILRNPVAK 90
LV ++ N+ + L++ A+
Sbjct: 105 LVEFYQLNKGVLPCK-----LKHYCAR 126
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 59.1 bits (143), Expect = 2e-12
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLL--------IDPEGVV 51
M+ AK +G FL+R+S S ++ +L + +D V
Sbjct: 24 MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83
Query: 52 RTKDRMFESVSHLVNYHCQNQLPIISAESA-------LILRNPVAK 90
++K + F+SV HL++Y+ Q + A L L P+
Sbjct: 84 KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYT 129
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 56.9 bits (138), Expect = 3e-12
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEG-VVRTKDRM 57
+R A+ ++DG FLVRES G Y + G KH ++ G +
Sbjct: 17 SNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNL 75
Query: 58 FESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
+ S+ LV ++ L + + L PV
Sbjct: 76 YSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 56.6 bits (137), Expect = 5e-12
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT------GYQGGTKKH--LLLIDPEGVVRTKDRMFESV 61
++G F+VR+S G+Y ++ G G +H + + +F ++
Sbjct: 29 QEGKEGGFIVRDSS-KAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFSTI 87
Query: 62 SHLVNYHCQNQLPIISAESALILRNPVAKCATGAHTGQSL 101
L+NYH N +IS L+ PV++ A +
Sbjct: 88 PELINYHQHNSAGLISR-----LKYPVSQQNKNAPSTHHH 122
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 56.7 bits (137), Expect = 6e-12
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEG----VVRTKD 55
++R A+ + DG FLVR+S L+ G H + G +
Sbjct: 31 ITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDV 90
Query: 56 RMFESVSHLVNYHCQN----------QLPIISAESALILRNPVAK 90
S+ L+ + + SA + L NPV++
Sbjct: 91 EGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSR 135
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 55.4 bits (134), Expect = 1e-11
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEG------VVRTKDRMFESVS 62
+ +DG FLVR S+ Y L +L + + R F +
Sbjct: 28 RTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLD 87
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
L+ ++ + + +++ L+ PV
Sbjct: 88 QLIEFYKKENMGLVTH-----LQYPVPL 110
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 54.6 bits (132), Expect = 2e-11
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT------GYQGGTKKH-LLLIDPEG-VVRTKDRMFESV 61
++G F+VR S G Y ++ + GT KH + + E + ++ F+S+
Sbjct: 29 QKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSI 87
Query: 62 SHLVNYHCQNQLPIISAESALILRNPVA 89
L++YH N +I+ LR+PV+
Sbjct: 88 PKLIHYHQHNSAGMITR-----LRHPVS 110
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 57.3 bits (138), Expect = 3e-11
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH--LLLIDPEGVVRTKDRMFESVSHLVNY 67
DG FL+R+ S G YVL+ H + + + L +
Sbjct: 27 AGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEF 86
Query: 68 HCQNQLPIISAESALILRNPVAKC 91
+ ++ + LR P +
Sbjct: 87 YSRDPDGLPCN-----LRKPCNRP 105
Score = 51.1 bits (122), Expect = 4e-09
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH--LLLIDPEGVVRTKDRMFESVSHLVNY 67
++ DG FL+R + G Y L+ G T H + + F+++ LV Y
Sbjct: 180 GAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEY 238
Query: 68 HCQNQ 72
Sbjct: 239 LKLKA 243
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 54.2 bits (131), Expect = 3e-11
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEG------VVRTKDRMFESVS 62
+ DG +L+R+S+ PG Y L G + G R F +
Sbjct: 22 ATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK 81
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
+L++ + I+ L+ PV K
Sbjct: 82 NLISAFQKPDQGIVIP-----LQYPVEK 104
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 53.8 bits (130), Expect = 4e-11
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEG------VVRTKDRMFESVS 62
DG+FL+R+S+ PG L + + G T +F ++
Sbjct: 21 KGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQ 80
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
LV+ + + ++ L NP+ +
Sbjct: 81 ELVSKYGKPGQGLVVH-----LSNPIMR 103
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution
structure, backbone dynamics, transferase; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 100
Score = 53.3 bits (129), Expect = 5e-11
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDRM-FESVSHLVNY 67
G FL+R S+ YVL+ +H + G + + + F S+ LVNY
Sbjct: 21 EGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY 80
Query: 68 HCQNQLPIISAESALILRNPVAK 90
H L L P K
Sbjct: 81 HRAQSLSHGLR-----LAAPCRK 98
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 56.4 bits (136), Expect = 5e-11
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT-----GYQGGTKKH--LLLIDPEGVVRTKDRMFESVS 62
G FLVRES+ + G Y L+ +G KH + +D G T F S+
Sbjct: 167 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ 226
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
LV Y+ ++ + L
Sbjct: 227 QLVAYYSKHADGLCHR-----LTTVCPT 249
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 53.6 bits (129), Expect = 8e-11
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEG------VVRTKDRMFESVS 62
+ DG +L+R+S+ PG Y L G + G R F +
Sbjct: 22 ATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK 81
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
+L++ + I+ L+ PV K
Sbjct: 82 NLISAFQKPDQGIVIP-----LQYPVEK 104
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 53.0 bits (128), Expect = 9e-11
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEG-VVRTKDRMFESVSHLVNYH 68
S +G FLVRES+ SPGQ ++ G H + +G V T + F +++ LV++H
Sbjct: 34 SLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHH 93
Query: 69 CQNQLPIISAESALILRNPVAKC 91
+ L P KC
Sbjct: 94 STV-----ADGLVTTLHYPAPKC 111
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 52.7 bits (127), Expect = 1e-10
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 9 FPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFESVSHLVNY 67
+DG FL+R+ + Y +T G KH + D V FES+ LV+Y
Sbjct: 36 MRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSY 94
Query: 68 HCQNQLPIISAESALILRNPVAK 90
+ ++ L LR PV
Sbjct: 95 YEKHALYRKMR-----LRYPVTP 112
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 54.5 bits (131), Expect = 2e-10
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDR-MFESVSHLVNY 67
++ DG FL+R + G Y L+ G T H L+ D G + F+++ LV Y
Sbjct: 178 GAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEY 236
Query: 68 HCQNQ 72
Sbjct: 237 LKLKA 241
Score = 53.0 bits (127), Expect = 6e-10
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDR-MFESVSHLVNY 67
DG FL+R+ S G YVL+ H + G + L +
Sbjct: 25 AGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEF 84
Query: 68 HCQNQLPII 76
+ ++ +
Sbjct: 85 YSRDPDGLP 93
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 54.3 bits (130), Expect = 3e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLL-LIDPEGVVR-TKDRM 57
++R A+ ++DG FL+RES G Y + G KH + G +
Sbjct: 201 INRTQAEEMLSGKRDGTFLIRESS-QRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNL 259
Query: 58 FESVSHLVNYHCQNQLPIISAESALILRNPVAK 90
+ S+ LV ++ L + + L +PV
Sbjct: 260 YGSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 54.4 bits (131), Expect = 3e-10
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT-----GYQGGTKKH--LLLIDPEGVVRTKDRMFESVS 62
G FLVRES+ + G Y L+ +G KH + +D G T F S+
Sbjct: 84 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ 143
Query: 63 HLVNYHCQNQLPIIS 77
LV Y+ ++ +
Sbjct: 144 QLVAYYSKHADGLCH 158
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 51.8 bits (125), Expect = 3e-10
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKH--LLLIDPEGVVRTKDRMFESVSHLVNYH 68
S +G FLVRES+ SPGQ ++ G H + + + + F +++ LV++H
Sbjct: 23 SGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHH 82
Query: 69 CQNQLPIISAESALILRNPVAK 90
+ L P K
Sbjct: 83 STV-----ADGLITTLHYPAPK 99
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 54.3 bits (131), Expect = 3e-10
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDRMFESVSHLVNYHC 69
+ G FLVRES PG Y L G +H ++ + ++ FE++ LV ++
Sbjct: 98 PPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYT 157
Query: 70 QNQLPIISAESALILRNPVAK 90
+ + + L P
Sbjct: 158 TDADGLCTR-----LIKPKVM 173
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 53.9 bits (128), Expect = 3e-10
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTG-YQGGTKKHLLLIDPEGVVRTKDRMF 58
+SR A+T ++ G FLVR+S PG YVL+ +++ P + D+ F
Sbjct: 19 VSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEF 78
Query: 59 ESVSHLVNYHCQNQ 72
+ + L+ ++ +
Sbjct: 79 DHLPALLEFYKIHY 92
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2
domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1
d.93.1.1 PDB: 1csy_A* 1csz_A*
Length = 254
Score = 53.4 bits (128), Expect = 5e-10
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVR-TKDRMFESVSHLVNY 67
DG +L+R+S+ G + L+ G H + + G R S + L +Y
Sbjct: 24 GGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCHY 83
Query: 68 HCQN 71
H Q
Sbjct: 84 HSQE 87
Score = 51.8 bits (124), Expect = 2e-09
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDRM-FESVSHLVNY 67
S+ +G FL+R + G Y L G H + D G + + F+++ LV +
Sbjct: 177 GSKTNGKFLIRARD-NNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEH 235
Query: 68 HCQNQLPIISAESALILRNPVAK 90
+ ++ L P K
Sbjct: 236 YSYKADGLLRV-----LTVPCQK 253
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide);
HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB:
1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A*
1cwd_L* 1cwe_A*
Length = 105
Score = 50.4 bits (121), Expect = 8e-10
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT-----GYQGGTKKH-LLLIDPEGVVRTKDRM-FESVS 62
P G FL+RES+ + G + L+ QG KH + G R+ F +
Sbjct: 23 PGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLH 82
Query: 63 HLVNYHCQNQ 72
LV ++
Sbjct: 83 ELVRHYTNAS 92
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 50.4 bits (121), Expect = 1e-09
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEG--VVRTKDRMFESVSHLVN 66
S+ G FL+R S G Y L+ + H ++ + +G ++ + S+ LV
Sbjct: 33 ESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVT 91
Query: 67 YHCQNQLPIISAESALILRNPVAK 90
+H Q + +L P +
Sbjct: 92 FHQQKPIEPRR----ELLTQPCRQ 111
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 50.7 bits (121), Expect = 1e-09
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLT---------------GYQGGTKKHLLL 44
+SR A + G FL+R+S G Y L +H L+
Sbjct: 27 LSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLI 86
Query: 45 IDPEGVVR----TKDRMFESVSHLVNYHCQNQL 73
V+ + F S+S LV+ H + +
Sbjct: 87 ETGPKGVKIKGCPSEPYFGSLSALVSQHSISPI 119
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 51.1 bits (122), Expect = 1e-09
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL--------LLIDPEGVV 51
++ A + G FL+R+S + L+ K+L + +
Sbjct: 30 VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89
Query: 52 RTKDRMFESVSHLVNYHCQN 71
F+ V LV+++
Sbjct: 90 TQPVPRFDCVLKLVHHYMPP 109
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 50.0 bits (120), Expect = 2e-09
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 10 PSRQDGDFLVRESQGSPGQYVL----TGYQGGTKKH-LLLIDPEGVVRTKDR-MFESVSH 63
P + G FL+RES+ + G + L QG KH + G R F ++
Sbjct: 31 PMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQA 90
Query: 64 LVNYHCQNQLPIISAESALILRNPVAKCA 92
LV ++ + + L P A
Sbjct: 91 LVQHYSKKGDGLCQK-----LTLPCVNLA 114
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 51.6 bits (124), Expect = 3e-09
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT-----GYQGGTKKH--LLLIDPEGVVRTKDRMFESVS 62
P G F++R+S+ + G Y L+ QG T KH + +D G + F ++
Sbjct: 89 PGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQ 148
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAK 90
LV+++ + + L P
Sbjct: 149 ELVDHYKKGNDGLCQ-----KLSVPCMS 171
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 50.3 bits (120), Expect = 4e-09
Identities = 9/88 (10%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 11 SRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEG-----VVRTKDRMFESVSHLV 65
+ +G FL+R+S + ++ + H + ++ L+
Sbjct: 52 GKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLL 111
Query: 66 NYHCQNQLPIISAESALILRNPVAKCAT 93
++ + +L P+ +
Sbjct: 112 EHYKDPSACMF---FEPLLSTPLIRTFP 136
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 50.3 bits (119), Expect = 7e-09
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-------------- 45
+SR A ++ G FLVR+S SPG YVL+ + H ++
Sbjct: 20 LSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQ 79
Query: 46 ----DPEGVVRTKDRMFESVSHLVNYHCQNQ 72
+R D+ F+S+ L+ ++ +
Sbjct: 80 PPPGVSPSRLRIGDQEFDSLPALLEFYKIHY 110
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET:
CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A
1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 48.1 bits (115), Expect = 8e-09
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT------GYQGGTKKH----LLLIDPEGVVRTKDRMFE 59
+ ++G F+VR+S+ +PG Y ++ + KH P+ + +F+
Sbjct: 27 DTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFD 85
Query: 60 SVSHLVNYHCQN 71
S+ L+ YH N
Sbjct: 86 SIPLLIQYHQYN 97
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 48.8 bits (116), Expect = 8e-09
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 1 MSRI-AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH--------LLLIDPEGVV 51
++ A + G FL+R+S + L+ K+ + +
Sbjct: 41 VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRS 100
Query: 52 RTKDRMFESVSHLVNYHCQNQLPIISAESALILRNP 87
F+ V LV+++ Q S
Sbjct: 101 TQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYS 136
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 49.3 bits (117), Expect = 1e-08
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKH-LLLIDPEGVVRTKDRMFESVSHLVNYH 68
R DG FL+RES+ +PG + L+ G +H +L D G F S++ LV+YH
Sbjct: 76 KQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH 135
Query: 69 CQNQL 73
+
Sbjct: 136 RSTSV 140
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 46.9 bits (112), Expect = 3e-08
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT------GYQGGTKKH-LLLIDPEG-VVRTKDRMFESV 61
++G F+VR+S+ G Y ++ KH + + G + F+S+
Sbjct: 34 QESKEGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSI 92
Query: 62 SHLVNYHCQNQLPIISAESALILRNPVAK 90
L+ YH N +++ LR PV
Sbjct: 93 PELIWYHQHNAAGLMTR-----LRYPVGL 116
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 45.9 bits (108), Expect = 6e-08
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 5 AKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTK-KHLLLIDPEGVVR-TKDRMFESVS 62
A + QDG + +R S G+ ++ + K ++ + + + + +F SV
Sbjct: 35 ATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVG 94
Query: 63 HLVNYHCQNQLPIISAESALILRNPVAKCATGA 95
+V ++ + LP + +L+LR+P + +
Sbjct: 95 SMVEHYHTHVLP---SHQSLLLRHPYGYTSGPS 124
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 41.9 bits (97), Expect = 6e-06
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 1 MSR-IAKTAFPSRQDGDFLVRESQGSPGQYVLT------------------GYQGGTKKH 41
+SR A ++ G FLVR+S SPG YVL+ +
Sbjct: 18 LSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQ 77
Query: 42 LLLIDPEGVVRTKDRMFESVSHLVNYHCQNQLP 74
+R D+ F+S+ L+ ++ + L
Sbjct: 78 PPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 110
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 41.0 bits (96), Expect = 1e-05
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 1 MSRIAKTAFPSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHL-LLIDPEGVVRTKDRMFE 59
+SR A +G +L+RESQ PG Y L G ++ L D + V ++ FE
Sbjct: 58 ISREAADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHFVG--EKRFE 115
Query: 60 SVSHLV 65
S+ LV
Sbjct: 116 SIHDLV 121
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 40.4 bits (94), Expect = 1e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGY-----QGGTKKHLLLI-DPEGVVR-TKDRMFESVS 62
P G FL+RES+ + G + L+ QG KH + G + F +
Sbjct: 93 PGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLH 152
Query: 63 HLVNYHCQN 71
LV ++
Sbjct: 153 ELVRHYTNA 161
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm,
phosphoprotein, SH2 domain, signaling protein; HET:
PTR; 1.90A {Homo sapiens}
Length = 125
Score = 39.0 bits (91), Expect = 3e-05
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT---GYQGGTKKH-LLLIDPEGVV--RTKDRMFESVSH 63
+ G+ ++R Y +T KH ++ + K ++
Sbjct: 33 KNPSLGNMILRPGS-DSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFS 91
Query: 64 LVNYHCQN 71
+++Y +
Sbjct: 92 VIDYFVKE 99
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 37.9 bits (87), Expect = 1e-04
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLT---GYQGGTKKHLLLIDPE--------GVVRTKDRMF 58
P G FL+R+S PG+Y LT +G H L+ E V+ ++ F
Sbjct: 60 PQVSIGTFLMRDSS-RPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSF 118
Query: 59 ESVSHLVNYHCQNQLP 74
+ L+N+ L
Sbjct: 119 PDIPALLNHFKMRVLT 134
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein
tyrosine phosphatase, SHP-1, signaling, hydrolase;
2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 36.0 bits (83), Expect = 8e-04
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYHCQN 71
G FL R S+ + G + L+ G H+ + + F +++ LV Y+ Q
Sbjct: 23 VHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQ 82
Query: 72 Q 72
Q
Sbjct: 83 Q 83
Score = 31.8 bits (72), Expect = 0.024
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 15 GDFLVRESQGSPGQYVLT 32
FLVRES PG +VL+
Sbjct: 131 WTFLVRESLSQPGDFVLS 148
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 35.7 bits (82), Expect = 0.001
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYHCQN 71
G FL R S+ + G + L+ G H+ + + F +++ LV Y+ Q
Sbjct: 23 VHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQ 82
Query: 72 Q 72
Q
Sbjct: 83 Q 83
Score = 31.8 bits (72), Expect = 0.021
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 15 GDFLVRESQGSPGQYVLT 32
FLVRES PG +VL+
Sbjct: 131 WTFLVRESLSQPGDFVLS 148
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 35.2 bits (81), Expect = 0.001
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 13 QDGDFLVRESQGSPGQYVLTGYQGGTKKHLLLI-DPEGVVRTKDRMFESVSHLVNYHCQN 71
DG FL R S+ +PG L+ + G H+ + + F +++ LV Y+ ++
Sbjct: 25 VDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEH 84
Query: 72 QLPIISAESALI-LRNPV 88
+ +I L+ P+
Sbjct: 85 HGQLKEKNGDVIELKYPL 102
Score = 33.7 bits (77), Expect = 0.006
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 13 QDGDFLVRESQGSPGQYVLT 32
+ G FLVRESQ PG +VL+
Sbjct: 131 KHGSFLVRESQSHPGDFVLS 150
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 32.8 bits (74), Expect = 0.009
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGY---QGGTKKHLLLI--------DPEGVVRTKDRMF 58
P G FL+R+S PG+Y LT +G H L+ V+ ++ F
Sbjct: 31 PQVSIGTFLMRDSS-RPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSF 89
Query: 59 ESVSHLVNYHCQNQLP 74
+ L+N+ L
Sbjct: 90 PDIPALLNHFKMRVLT 105
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 29.3 bits (65), Expect = 0.10
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 10 PSRQDGDFLVRESQGSPGQYVLTGYQGGTKKHLL---LIDPEG---VVRTKDRM-FESVS 62
+ G+ L+R S +T Q H++ + EG V+ + S+
Sbjct: 39 RYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLD 98
Query: 63 HLVNYHCQN 71
+VNY +
Sbjct: 99 AVVNYFVSH 107
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 29.2 bits (64), Expect = 0.22
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 11 SRQDGDFLVRESQGSPGQYVLT---GYQGGTKKHLLL--IDPEGVVRTKDRMFESVSHLV 65
++ G F++R S+ +PGQ+ + KH L+ D +T S V
Sbjct: 369 NQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKTFPDFLSEHSQFV 428
Query: 66 NYHCQNQLP 74
N +
Sbjct: 429 NLLQWTKDT 437
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.25
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 25/84 (29%)
Query: 18 LVRESQGSPGQY----VLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHL--------- 64
+V G V G + ++ I+P V + + E++ ++
Sbjct: 1785 VVFY----RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYVVERVGKRTG 1838
Query: 65 -----VNYHCQNQLPIISAE-SAL 82
VNY+ +NQ + + + AL
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRAL 1862
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 28.3 bits (62), Expect = 0.34
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 24 GSPGQ-YVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
G P + GY G + L+ +DP + ++HCQ+
Sbjct: 261 GKPNSAHYFIGYVG---EELIYLDPHTTQPAVEPTDGCFIPDESFHCQH 306
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport,
thiol Pro transport, UBL conjugation pathway, structural
genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Length = 355
Score = 28.0 bits (61), Expect = 0.53
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 24 GSPGQ-YVLTGYQGGTKKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQN 71
G P Y G+ G L+ +DP D + +HC
Sbjct: 255 GKPNNAYYFIGFLG---DELIFLDPHTTQTFVDTEENGTVNDQTFHCLQ 300
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 26.8 bits (59), Expect = 1.1
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 11 SRQDGDFLVRESQGSPGQYVLT-----------GYQGGTKKHLLLIDPEGVVRTKDRMFE 59
S++ GDF++R+S +T Q K++ L + VV + +
Sbjct: 25 SKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVVEGQR--YH 82
Query: 60 SVSHLVNYHCQN 71
+ ++ + QN
Sbjct: 83 DLDQIIVEYLQN 94
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 26.0 bits (58), Expect = 1.7
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 30 VLTGYQGGTKKHLLLIDPEGVVR 52
V G + ++D G++R
Sbjct: 113 VFNEQAGIANRGTFVVDRSGIIR 135
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 1.8
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 87 PVAKCATGAH 96
PV CAT
Sbjct: 1102 PVGACATSVE 1111
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 25.8 bits (57), Expect = 2.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 41 HLLLIDPEGVVRTKDRMFE 59
L L+D V KD +
Sbjct: 116 TLYLLDKNKTVLLKDATLQ 134
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 25.8 bits (57), Expect = 2.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 41 HLLLIDPEGVVRTKDRMFE 59
+ L+D V KD E
Sbjct: 112 TIYLLDGRKRVILKDTSME 130
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 25.4 bits (55), Expect = 3.8
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 26 PGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMF---------ESVSHLVNYHCQNQLPII 76
PG YV ++ G LL + +R +D + E L + II
Sbjct: 96 PGPYVCAEWEMGGLPWWLLKKKDIKLREQDPYYMERVKLFLNEVGKQLADLQISKGGNII 155
Query: 77 SAE 79
+
Sbjct: 156 MVQ 158
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 24.7 bits (54), Expect = 4.9
Identities = 2/15 (13%), Positives = 9/15 (60%)
Query: 41 HLLLIDPEGVVRTKD 55
L+++ +G + + +
Sbjct: 111 ALVIVKKDGTLISMN 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 5.5
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 59 ESVSHLVNYHCQNQLPIISAESALILRNP-VAKCAT 93
+++ L Q L + + +SA P +A AT
Sbjct: 20 QALKKL-----QASLKLYADDSA-----PALAIKAT 45
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair
protein, suicidal enzyme, hyperthermostability; 1.80A
{Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Length = 174
Score = 24.7 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 31 LTGYQGG--TKKHLLLIDPEGVVR 52
+ Y G KK LL I EGV
Sbjct: 150 IGYYSSGIEEKKFLLEI--EGVKE 171
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 24.9 bits (55), Expect = 6.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 26 PGQYVLTGYQGGTKKHLLLIDPEGVVRTKD 55
PG +V Q G K+ +L +GV R
Sbjct: 254 PGMFVHAQLQEGVKQKAILAPQQGVTRDLK 283
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 24.5 bits (54), Expect = 6.9
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 26 PGQYVLTGYQGGTKKHLLLIDPEGVVRT 53
PG +V + G + +L+ +G+
Sbjct: 246 PGMFVRARLEEGLNPNAILVPQQGLEHH 273
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 24.9 bits (54), Expect = 6.9
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 53 TKDRMFESVSHLVNYHCQNQLPIISAESAL 82
E + YH Q PI L
Sbjct: 80 KIRHNIEDGGVQLAYHYQQNTPIGDGPVLL 109
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 24.8 bits (53), Expect = 6.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 26 PGQYVLTGYQGGTKKHLLLIDPEGVVRTKDRMF 58
PG Y+ ++ G LL ++R+ D +
Sbjct: 99 PGPYICAEWEMGGLPAWLLEKESILLRSSDPDY 131
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical
protein, TRI-lobal structure, structural genomics, PSI;
2.80A {Mycoplasma pneumoniae}
Length = 218
Score = 24.4 bits (52), Expect = 7.5
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 39 KKHLLLIDPEGVVRTKDRMFESVSHLVNYHCQNQLPIISAESALILRNPV 88
K+ + I E V +E + V + ++ +AL+ V
Sbjct: 150 KEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMV 199
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 24.5 bits (53), Expect = 8.3
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 6 KTAFPSRQDGDFL-------------VRESQGSPG 27
K FPSR G FL V+ + PG
Sbjct: 213 KYKFPSRSSGIFLWNFEQLKMNLDDIVKAAMNVPG 247
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 24.1 bits (53), Expect = 8.6
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 14 DGDFLVRESQGSPGQYVLTGYQGGTKKHLLLIDPEGVVR 52
D + V + + + K+ + ++ P+G V
Sbjct: 97 DYNREVIKLYNVYHEDLKGLK-MVAKRAVFIVKPDGTVA 134
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene
mycotoxin, deoxynivaleno toxin, fusarium graminearum,
coenzyme A; 1.75A {Fusarium sporotrichioides} PDB:
3fp0_A*
Length = 519
Score = 24.6 bits (52), Expect = 8.8
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 1 MSRIAKTAFPSRQDGDFLVRESQGSPGQYV 30
MS + +A P + + + S Q
Sbjct: 1 MSASSSSALPPLVPALYRWKSTGSSGRQVQ 30
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 24.1 bits (53), Expect = 9.5
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 44 LIDPEGVVR 52
LID VR
Sbjct: 128 LIDKNMKVR 136
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 24.0 bits (53), Expect = 9.7
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 42 LLLIDPEGVVR 52
+IDP+GV++
Sbjct: 122 TFIIDPDGVIQ 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,471,124
Number of extensions: 73195
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 130
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)