BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8456
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ORV|A Chain A, Human Thymidine Kinase 1 In Complex With Tp4a
pdb|2ORV|B Chain B, Human Thymidine Kinase 1 In Complex With Tp4a
Length = 234
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 119/200 (59%), Gaps = 47/200 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
+VILGPMFSGK+TEL+RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A
Sbjct: 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACL 80
Query: 213 LNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAAL 272
L + + VIGIDEGQF
Sbjct: 81 LRDVAQEALGVAVIGIDEGQF--------------------------------------- 101
Query: 273 NVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 332
FPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM
Sbjct: 102 -------FPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCM 154
Query: 333 SCFRDAAFTKRIGQEKEVRI 352
CFR+AA+TKR+G EKEV +
Sbjct: 155 ECFREAAYTKRLGTEKEVEV 174
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A L + + VIGI
Sbjct: 38 RRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEALGVAVIGI 96
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSC 138
DEGQFFPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM C
Sbjct: 97 DEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMEC 156
Query: 139 FRDAAFTKRIGQEKEV 154
FR+AA+TKR+G EKEV
Sbjct: 157 FREAAYTKRLGTEKEV 172
>pdb|1W4R|A Chain A, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|B Chain B, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|C Chain C, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|D Chain D, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|E Chain E, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|F Chain F, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|G Chain G, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|H Chain H, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
Length = 195
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 119/200 (59%), Gaps = 47/200 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
+VILGPMFSGK+TEL+RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A
Sbjct: 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACL 81
Query: 213 LNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAAL 272
L + + VIGIDEGQF
Sbjct: 82 LRDVAQEALGVAVIGIDEGQF--------------------------------------- 102
Query: 273 NVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 332
FPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM
Sbjct: 103 -------FPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCM 155
Query: 333 SCFRDAAFTKRIGQEKEVRI 352
CFR+AA+TKR+G EKEV +
Sbjct: 156 ECFREAAYTKRLGTEKEVEV 175
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A L + + VIGI
Sbjct: 39 RRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEALGVAVIGI 97
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSC 138
DEGQFFPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM C
Sbjct: 98 DEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMEC 157
Query: 139 FRDAAFTKRIGQEKEV 154
FR+AA+TKR+G EKEV
Sbjct: 158 FREAAYTKRLGTEKEV 173
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 234 VEVIGGSDKYMAVCRECYKQKA 255
VEVIGG+DKY +VCR CY +KA
Sbjct: 173 VEVIGGADKYHSVCRLCYFKKA 194
>pdb|1XBT|A Chain A, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|B Chain B, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|C Chain C, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|D Chain D, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|E Chain E, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|F Chain F, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|G Chain G, Crystal Structure Of Human Thymidine Kinase 1
pdb|1XBT|H Chain H, Crystal Structure Of Human Thymidine Kinase 1
Length = 193
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 119/200 (59%), Gaps = 47/200 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
+VILGPMFSGK+TEL+RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A
Sbjct: 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACL 80
Query: 213 LNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAAL 272
L + + VIGIDEGQF
Sbjct: 81 LRDVAQEALGVAVIGIDEGQF--------------------------------------- 101
Query: 273 NVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 332
FPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM
Sbjct: 102 -------FPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCM 154
Query: 333 SCFRDAAFTKRIGQEKEVRI 352
CFR+AA+TKR+G EKEV +
Sbjct: 155 ECFREAAYTKRLGTEKEVEV 174
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A L + + VIGI
Sbjct: 38 RRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEALGVAVIGI 96
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSC 138
DEGQFFPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM C
Sbjct: 97 DEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMEC 156
Query: 139 FRDAAFTKRIGQEKEV 154
FR+AA+TKR+G EKEV
Sbjct: 157 FREAAYTKRLGTEKEV 172
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 234 VEVIGGSDKYMAVCRECYKQKA 255
VEVIGG+DKY +VCR CY +KA
Sbjct: 172 VEVIGGADKYHSVCRLCYFKKA 193
>pdb|2WVJ|A Chain A, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|B Chain B, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|C Chain C, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|D Chain D, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|E Chain E, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|F Chain F, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|G Chain G, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
pdb|2WVJ|H Chain H, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts
The Specificity From Thymidine Towards The Nucleoside
Analogue Azidothymidine
Length = 193
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 119/200 (59%), Gaps = 47/200 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
+VILGPMFSGK+TEL+RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A
Sbjct: 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACL 80
Query: 213 LNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAAL 272
L + + VIGIDEGQF
Sbjct: 81 LRDVAQEALGVAVIGIDEGQF--------------------------------------- 101
Query: 273 NVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 332
FPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM
Sbjct: 102 -------FPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCM 154
Query: 333 SCFRDAAFTKRIGQEKEVRI 352
CFR+AA++KR+G EKEV +
Sbjct: 155 ECFREAAYSKRLGTEKEVEV 174
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A L + + VIGI
Sbjct: 38 RRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEALGVAVIGI 96
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSC 138
DEGQFFPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLTAVCM C
Sbjct: 97 DEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMEC 156
Query: 139 FRDAAFTKRIGQEKEV 154
FR+AA++KR+G EKEV
Sbjct: 157 FREAAYSKRLGTEKEV 172
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 234 VEVIGGSDKYMAVCRECYKQKA 255
VEVIGG+DKY +VCR CY +KA
Sbjct: 172 VEVIGGADKYHSVCRLCYFKKA 193
>pdb|2J87|A Chain A, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|B Chain B, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|C Chain C, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|D Chain D, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
Length = 177
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 121/204 (59%), Gaps = 47/204 (23%)
Query: 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV 208
G ++I+GPMFSGK+TELIRR+RRYQ A Y+C+ ++Y+ D+RY T + THD+ A+
Sbjct: 3 GGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYGT-GLWTHDKNNFEAL 61
Query: 209 SAVELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANE 268
A +L ++ D VIGIDEGQF
Sbjct: 62 EATKLCDVLQSITDFSVIGIDEGQF----------------------------------- 86
Query: 269 NAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 328
FPD+V F E MAN GKIV+VAALDGTFQR FN+IL+L+ L+E V KLT
Sbjct: 87 -----------FPDIVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKLT 135
Query: 329 AVCMSCFRDAAFTKRIGQEKEVRI 352
AVCM CF++A+F+KR+G+E E+ I
Sbjct: 136 AVCMKCFKEASFSKRLGEETEIEI 159
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 2/140 (1%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RRYQ A Y+C+ ++Y+ D+RY T + THD+ A+ A +L ++ D VIGI
Sbjct: 23 RRVRRYQIAQYKCVTIKYSNDNRYGT-GLWTHDKNNFEALEATKLCDVLQSITDFSVIGI 81
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSC 138
DEGQFFPD+V F E MAN GKIV+VAALDGTFQR FN+IL+L+ L+E V KLTAVCM C
Sbjct: 82 DEGQFFPDIVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKLTAVCMKC 141
Query: 139 FRDAAFTKRIGQEKEV-ILG 157
F++A+F+KR+G+E E+ I+G
Sbjct: 142 FKEASFSKRLGEETEIEIIG 161
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 234 VEVIGGSDKYMAVCRECY 251
+E+IGG+D Y +VCR+CY
Sbjct: 157 IEIIGGNDMYQSVCRKCY 174
>pdb|2J9R|A Chain A, Thymidine Kinase From B. Anthracis In Complex With Dt
Length = 214
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 46/193 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
EVI G MFSGK+ ELIRR+RR Q+A ++ + D+RY E V +H+ K+ AV
Sbjct: 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA 90
Query: 213 LNKLIPH-TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+ H T+++DVI IDE QF +
Sbjct: 91 SKDIFKHITEEMDVIAIDEVQFFD------------------------------------ 114
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 331
D+V + +AN G V+VA LD F+ F + L+ +AE V KL AVC
Sbjct: 115 ---------GDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVC 165
Query: 332 MSCFRDAAFTKRI 344
+C A+ T+R+
Sbjct: 166 SACGSPASRTQRL 178
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH-TKDIDVIG 77
RR+RR Q+A ++ + D+RY E V +H+ K+ AV + H T+++DVI
Sbjct: 47 RRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIA 106
Query: 78 IDEGQFF-PDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 136
IDE QFF D+V + +AN G V+VA LD F+ F + L+ +AE V KL AVC
Sbjct: 107 IDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCS 166
Query: 137 SCFRDAAFTKRI 148
+C A+ T+R+
Sbjct: 167 ACGSPASRTQRL 178
>pdb|2JA1|A Chain A, Thymidine Kinase From B. Cereus With Ttp Bound As
Phosphate Donor
Length = 197
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 88/193 (45%), Gaps = 46/193 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
EVI G MFSGK+ ELIRR+RR Q+A ++ + D+RY E V +H+ K+ AV
Sbjct: 13 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA 72
Query: 213 LNKLIPH-TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+ H T+++DVI IDE QF +
Sbjct: 73 SKDIFEHITEELDVIAIDEVQFFD------------------------------------ 96
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 331
D+V + +AN G V+VA LD F+ F + L+ +AE V KL AVC
Sbjct: 97 ---------GDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVC 147
Query: 332 MSCFRDAAFTKRI 344
C A+ T+R+
Sbjct: 148 SVCGSPASRTQRL 160
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH-TKDIDVIG 77
RR+RR Q+A ++ + D+RY E V +H+ K+ AV + H T+++DVI
Sbjct: 29 RRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFEHITEELDVIA 88
Query: 78 IDEGQFF-PDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 136
IDE QFF D+V + +AN G V+VA LD F+ F + L+ +AE V KL AVC
Sbjct: 89 IDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCS 148
Query: 137 SCFRDAAFTKRI 148
C A+ T+R+
Sbjct: 149 VCGSPASRTQRL 160
>pdb|3E2I|A Chain A, Crystal Structure Of Thymidine Kinase From S. Aureus
Length = 219
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 17 FCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH-TKDIDV 75
RR+RR YA + ++ + A DDRY EKV +H+ + A++ + +++ H ++DV
Sbjct: 45 LIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIXTHDLTNVDV 104
Query: 76 IGIDEGQFFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAV 134
IGIDE QFF D +VS E ++ G V+VA LD F+ F L ++E V KL AV
Sbjct: 105 IGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDXDFRGEPFEPXPKLXAVSEQVTKLQAV 164
Query: 135 CMSCFRDAAFTKRI 148
C C ++ T+R+
Sbjct: 165 CAVCGSSSSRTQRL 178
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
E I G FSGK+ ELIRR+RR YA + ++ + A DDRY EKV +H+ + A++ +
Sbjct: 31 ECITGSXFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISK 90
Query: 213 LNKLIPH-TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+++ H ++DVIGIDE QF +
Sbjct: 91 ASEIXTHDLTNVDVIGIDEVQFFD------------------------------------ 114
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 331
++VS E ++ G V+VA LD F+ F L ++E V KL AVC
Sbjct: 115 ---------DEIVSIVEKLSADGHRVIVAGLDXDFRGEPFEPXPKLXAVSEQVTKLQAVC 165
Query: 332 MSCFRDAAFTKRIGQEKEVRIE 353
C ++ T+R+ K +I+
Sbjct: 166 AVCGSSSSRTQRLINGKPAKID 187
>pdb|1XX6|A Chain A, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
Kinase With Adp. Northeast Structural Genomics Target
Car26.
pdb|1XX6|B Chain B, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
Kinase With Adp. Northeast Structural Genomics Target
Car26
Length = 191
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH-TKDIDVIG 77
RRIRR + A + + + D+RY E V +H +K AV+ +++ + +D +VI
Sbjct: 27 RRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHXGEKEQAVAIKNSREILKYFEEDTEVIA 86
Query: 78 IDEGQFFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 136
IDE QFF D +V +A +G+ V+ A LD F+ F I L +AE V+K+ A+C+
Sbjct: 87 IDEVQFFDDEIVEIVNKIAESGRRVICAGLDXDFRGKPFGPIPELXAIAEFVDKIQAICV 146
Query: 137 SCFRDAAFTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184
C A T+R+ K P F LI Y+ +C +V
Sbjct: 147 VCGNPATRTQRLINGK-----PAFYDDPVVLIGAXESYEARCRKCHVV 189
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 46/193 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
EVI+GP +SGK+ ELIRRIRR + A + + + D+RY E V +H +K AV+
Sbjct: 11 EVIVGPXYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHXGEKEQAVAIKN 70
Query: 213 LNKLIPH-TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+++ + +D +VI IDE QF +
Sbjct: 71 SREILKYFEEDTEVIAIDEVQFFD------------------------------------ 94
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 331
++V +A +G+ V+ A LD F+ F I L +AE V+K+ A+C
Sbjct: 95 ---------DEIVEIVNKIAESGRRVICAGLDXDFRGKPFGPIPELXAIAEFVDKIQAIC 145
Query: 332 MSCFRDAAFTKRI 344
+ C A T+R+
Sbjct: 146 VVCGNPATRTQRL 158
>pdb|2B8T|A Chain A, Crystal Structure Of Thymidine Kinase From U.Urealyticum
In Complex With Thymidine
pdb|2B8T|B Chain B, Crystal Structure Of Thymidine Kinase From U.Urealyticum
In Complex With Thymidine
pdb|2B8T|C Chain C, Crystal Structure Of Thymidine Kinase From U.Urealyticum
In Complex With Thymidine
pdb|2B8T|D Chain D, Crystal Structure Of Thymidine Kinase From U.Urealyticum
In Complex With Thymidine
Length = 223
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 61/211 (28%)
Query: 143 AFTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQ 202
AF+K+IG E I GPMF+GKT ELIRR+ R +YA+ + ++ + + DT +
Sbjct: 6 AFSKKIGW-IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK----PKIDTRSIRNIQS 60
Query: 203 QKLTAVSAVE-------LNKLIPHT--KDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQ 253
+ T++ +VE LN ++ ++ + VIGIDE QF
Sbjct: 61 RTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF-------------------- 100
Query: 254 KAPIKRSPFKTLANENAALNVPPPPEFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFN 312
F D + A +A G +V+++ LD F+ F
Sbjct: 101 --------------------------FDDRICEVANILAENGFVVIISGLDKNFKGEPFG 134
Query: 313 DILSLIPLAECVEKLTAVCMSCFRDAAFTKR 343
I L A+ + KLTA+C C +A + R
Sbjct: 135 PIAKLFTYADKITKLTAICNECGAEATHSLR 165
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVE-------LNKLIPHT- 70
RR+ R +YA+ + ++ + + DT + + T++ +VE LN ++ ++
Sbjct: 31 RRLHRLEYADVKYLVFK----PKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86
Query: 71 -KDIDVIGIDEGQFFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECV 128
+ VIGIDE QFF D + A +A G +V+++ LD F+ F I L A+ +
Sbjct: 87 NDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKI 146
Query: 129 EKLTAVCMSCFRDAAFTKR 147
KLTA+C C +A + R
Sbjct: 147 TKLTAICNECGAEATHSLR 165
>pdb|2UZ3|A Chain A, Crystal Structure Of Thymidine Kinase With Dttp From U.
Urealyticum
pdb|2UZ3|B Chain B, Crystal Structure Of Thymidine Kinase With Dttp From U.
Urealyticum
pdb|2UZ3|C Chain C, Crystal Structure Of Thymidine Kinase With Dttp From U.
Urealyticum
pdb|2UZ3|D Chain D, Crystal Structure Of Thymidine Kinase With Dttp From U.
Urealyticum
Length = 243
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 61/211 (28%)
Query: 143 AFTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQ 202
AF+K+IG E I GPMF+GKT ELIRR+ R +YA+ + ++ + + DT +
Sbjct: 26 AFSKKIGW-IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK----PKIDTRSIRNIQS 80
Query: 203 QKLTAVSAVE-------LNKLIPHT--KDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQ 253
+ T++ +VE LN ++ ++ + VIGIDE QF
Sbjct: 81 RTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF-------------------- 120
Query: 254 KAPIKRSPFKTLANENAALNVPPPPEFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFN 312
F D + A +A G +V+++ LD F+ F
Sbjct: 121 --------------------------FDDRICEVANILAENGFVVIISGLDKNFKGEPFG 154
Query: 313 DILSLIPLAECVEKLTAVCMSCFRDAAFTKR 343
I L A+ + KLTA+C C +A + R
Sbjct: 155 PIAKLFTYADKITKLTAICNECGAEATHSLR 185
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVE-------LNKLIPHT- 70
RR+ R +YA+ + ++ + + DT + + T++ +VE LN ++ ++
Sbjct: 51 RRLHRLEYADVKYLVFK----PKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 106
Query: 71 -KDIDVIGIDEGQFFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECV 128
+ VIGIDE QFF D + A +A G +V+++ LD F+ F I L A+ +
Sbjct: 107 NDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKI 166
Query: 129 EKLTAVCMSCFRDAAFTKR 147
KLTA+C C +A + R
Sbjct: 167 TKLTAICNECGAEATHSLR 185
>pdb|2ORW|A Chain A, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In
Complex With Tp4a
pdb|2ORW|B Chain B, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In
Complex With Tp4a
pdb|2QPO|A Chain A, Thermotoga Maritima Thymidine Kinase In The Apo Form
pdb|2QPO|B Chain B, Thermotoga Maritima Thymidine Kinase In The Apo Form
pdb|2QPO|C Chain C, Thermotoga Maritima Thymidine Kinase In The Apo Form
pdb|2QPO|D Chain D, Thermotoga Maritima Thymidine Kinase In The Apo Form
pdb|2QQ0|A Chain A, Thymidine Kinase From Thermotoga Maritima In Complex With
Thymidine + Appnhp
pdb|2QQ0|B Chain B, Thymidine Kinase From Thermotoga Maritima In Complex With
Thymidine + Appnhp
pdb|2QQE|A Chain A, Thymidine Kinase From Thermotoga Maritima In Complex With
Thymidine
pdb|2QQE|B Chain B, Thymidine Kinase From Thermotoga Maritima In Complex With
Thymidine
Length = 184
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 52/204 (25%)
Query: 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA---VSA 210
VI GPM+SGKTTEL+ + Y+ + + + D RY + + +H + A
Sbjct: 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERP 66
Query: 211 VELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENA 270
E+ K I +D + IDE QF
Sbjct: 67 EEMRKYIE--EDTRGVFIDEVQFFN----------------------------------- 89
Query: 271 ALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAV 330
P + + + + G V A LD T ++ F L+ LA+ V K AV
Sbjct: 90 ----------PSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139
Query: 331 CMSCFR-DAAFTKRI-GQEKEVRI 352
C C +A T ++ G E+E+ +
Sbjct: 140 CHRCGEYNATLTLKVAGGEEEIDV 163
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 237 IGGSDKYMAVCRECY 251
+GG +KY+AVCR+CY
Sbjct: 163 VGGQEKYIAVCRDCY 177
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 53 QKLTAVSAVELNK-LIPHTKDIDVIGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQ 111
Q T + EL+ LI TKDI +EG++ DV+ + GK ++LD
Sbjct: 229 QTFTEWNEGELSSYLIDITKDIFTKKDEEGKYLVDVILDEAANKGTGKWTSQSSLD---- 284
Query: 112 RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMF--SGKTTELIR 169
+ LSLI E + A +S +D +R+ K V+ GP +G E I
Sbjct: 285 ---LGEPLSLI-----TESVFARYISSLKD----QRVAASK-VLSGPQAQPAGDKAEFIE 331
Query: 170 RIRRYQYANYRCMIVRYAK 188
++RR A Y IV YA+
Sbjct: 332 KVRR---ALYLGKIVSYAQ 347
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 53 QKLTAVSAVELNK-LIPHTKDIDVIGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQ 111
Q T + EL+ LI TKDI ++G + DV+ + GK +ALD
Sbjct: 229 QTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALD---- 284
Query: 112 RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMF--SGKTTELIR 169
+ LSLI E + A +S +D +R+ K V+ GP +G E I
Sbjct: 285 ---LGEPLSLI-----TESVFARYISSLKD----QRVAASK-VLSGPQAQPAGDKAEFIE 331
Query: 170 RIRRYQYANYRCMIVRYAK 188
++RR A Y IV YA+
Sbjct: 332 KVRR---ALYLGKIVSYAQ 347
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 53 QKLTAVSAVELNK-LIPHTKDIDVIGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQ 111
Q T + EL+ LI TKDI ++G + DV+ + GK +ALD
Sbjct: 229 QTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALD---- 284
Query: 112 RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMF--SGKTTELIR 169
+ LSLI E + A +S +D +R+ K V+ GP +G E I
Sbjct: 285 ---LGEPLSLI-----TESVFARYISSLKD----QRVAASK-VLSGPQAQPAGDKAEFIE 331
Query: 170 RIRRYQYANYRCMIVRYAK 188
++RR A Y IV YA+
Sbjct: 332 KVRR---ALYLGKIVSYAQ 347
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 104 AALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTK 146
A+D F G NDI +P+ E + L A+ S RD T+
Sbjct: 84 GAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTE 126
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 300 AALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTK 342
A+D F G NDI +P+ E + L A+ S RD T+
Sbjct: 84 GAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTE 126
>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
pdb|2P0A|B Chain B, The Crystal Structure Of Human Synapsin Iii (Syn3) In
Complex With Amppnp
Length = 344
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 278 PEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRD 337
P FP VV + A GKI V LD F DI S++ +A+ T F D
Sbjct: 168 PHFPVVVKLGHAHAGMGKIKVENQLD-------FQDITSVVAMAK-----TYATTEAFID 215
Query: 338 AAFTKRI 344
+ + RI
Sbjct: 216 SKYDIRI 222
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio
Cholerae
Length = 226
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 74 DVIGIDEGQ-FFPDVVSFAESMANAGKIVVVAALD--GTFQRTGFNDI 118
DVIG ++ Q +F + F ES AGK++ A D F+ T F D+
Sbjct: 9 DVIGNEKQQAYFQQTLQFVESQRQAGKVIYPPAKDVFNAFRFTEFGDV 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,058,216
Number of Sequences: 62578
Number of extensions: 408540
Number of successful extensions: 956
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 58
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)