Query psy8456
Match_columns 353
No_of_seqs 236 out of 1346
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:20:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e2i_A Thymidine kinase; Zn-bi 100.0 7.9E-50 2.7E-54 370.5 14.4 142 9-150 37-180 (219)
2 1w4r_A Thymidine kinase; type 100.0 3.8E-49 1.3E-53 360.3 10.9 140 10-150 30-169 (195)
3 3e2i_A Thymidine kinase; Zn-bi 100.0 3.6E-47 1.2E-51 352.6 16.4 157 149-350 27-184 (219)
4 1w4r_A Thymidine kinase; type 100.0 3.9E-47 1.3E-51 347.0 10.4 158 146-350 16-173 (195)
5 2j9r_A Thymidine kinase; TK1, 100.0 2.2E-46 7.4E-51 346.4 13.3 142 10-151 38-181 (214)
6 2orv_A Thymidine kinase; TP4A 100.0 9.1E-46 3.1E-50 346.3 13.5 140 10-150 29-168 (234)
7 1xx6_A Thymidine kinase; NESG, 100.0 2.9E-44 1E-48 325.0 12.8 142 10-151 18-161 (191)
8 2j9r_A Thymidine kinase; TK1, 100.0 1.3E-43 4.4E-48 327.8 16.4 157 148-349 26-183 (214)
9 2orv_A Thymidine kinase; TP4A 100.0 1.6E-43 5.3E-48 331.2 12.9 157 147-350 16-172 (234)
10 1xx6_A Thymidine kinase; NESG, 100.0 1.3E-41 4.5E-46 307.6 16.0 156 149-349 7-163 (191)
11 2b8t_A Thymidine kinase; deoxy 100.0 3.1E-38 1E-42 292.4 13.3 140 10-150 22-168 (223)
12 2orw_A Thymidine kinase; TMTK, 100.0 1.6E-37 5.4E-42 277.2 14.8 143 8-150 11-156 (184)
13 2orw_A Thymidine kinase; TMTK, 100.0 5.4E-36 1.8E-40 267.3 14.9 156 150-350 3-160 (184)
14 2b8t_A Thymidine kinase; deoxy 100.0 6.8E-36 2.3E-40 276.7 14.4 158 146-349 8-171 (223)
15 2kjq_A DNAA-related protein; s 97.1 0.0017 5.7E-08 55.3 8.7 61 149-234 35-95 (149)
16 2r2a_A Uncharacterized protein 96.9 0.0014 4.8E-08 58.9 6.3 23 152-174 7-29 (199)
17 3bos_A Putative DNA replicatio 96.7 0.0053 1.8E-07 53.2 8.6 65 150-234 52-116 (242)
18 3e1s_A Exodeoxyribonuclease V, 96.7 0.0018 6E-08 67.0 6.3 38 150-187 204-241 (574)
19 1g5t_A COB(I)alamin adenosyltr 96.6 0.0016 5.5E-08 59.1 4.3 134 150-332 29-182 (196)
20 1rif_A DAR protein, DNA helica 96.5 0.011 3.9E-07 54.1 9.4 35 153-187 131-166 (282)
21 1g5t_A COB(I)alamin adenosyltr 96.4 0.0022 7.4E-08 58.3 4.2 115 11-135 39-181 (196)
22 1l8q_A Chromosomal replication 96.3 0.0029 1E-07 59.1 4.8 73 151-234 38-110 (324)
23 3upu_A ATP-dependent DNA helic 96.3 0.0035 1.2E-07 62.2 5.3 36 152-187 47-83 (459)
24 3ec2_A DNA replication protein 96.3 0.0064 2.2E-07 51.8 6.2 35 150-184 38-73 (180)
25 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.003 1E-07 54.7 3.9 37 150-186 23-59 (235)
26 2zr9_A Protein RECA, recombina 96.1 0.016 5.6E-07 56.0 9.0 82 150-234 61-151 (349)
27 2fz4_A DNA repair protein RAD2 96.1 0.012 4.1E-07 53.3 7.4 32 153-187 111-142 (237)
28 2oca_A DAR protein, ATP-depend 96.0 0.0068 2.3E-07 59.8 5.4 95 152-250 130-249 (510)
29 3hr8_A Protein RECA; alpha and 95.9 0.045 1.6E-06 53.5 11.1 82 150-234 61-151 (356)
30 2z4s_A Chromosomal replication 95.9 0.0079 2.7E-07 59.7 5.6 72 151-234 131-206 (440)
31 2fwr_A DNA repair protein RAD2 95.7 0.012 4E-07 57.5 5.9 90 152-248 110-214 (472)
32 3vkw_A Replicase large subunit 95.7 0.0023 7.8E-08 64.8 0.7 37 150-191 161-197 (446)
33 3jvv_A Twitching mobility prot 95.5 0.077 2.6E-06 51.6 10.9 81 149-232 122-206 (356)
34 2jlq_A Serine protease subunit 95.3 0.03 1E-06 55.3 7.4 37 151-187 20-57 (451)
35 2w58_A DNAI, primosome compone 95.2 0.014 4.9E-07 50.3 4.1 35 151-185 55-89 (202)
36 3llm_A ATP-dependent RNA helic 95.1 0.07 2.4E-06 47.6 8.6 38 150-187 76-118 (235)
37 3h1t_A Type I site-specific re 95.0 0.047 1.6E-06 55.2 7.9 36 152-187 200-244 (590)
38 3io5_A Recombination and repai 94.8 0.2 6.7E-06 49.0 11.3 80 152-234 30-123 (333)
39 1jbk_A CLPB protein; beta barr 94.8 0.041 1.4E-06 45.3 5.7 25 152-176 45-69 (195)
40 2p65_A Hypothetical protein PF 94.8 0.018 6E-07 47.7 3.4 24 152-175 45-68 (187)
41 1yks_A Genome polyprotein [con 94.6 0.043 1.5E-06 54.2 6.2 39 150-188 8-47 (440)
42 2z83_A Helicase/nucleoside tri 94.6 0.028 9.7E-07 55.7 4.9 39 150-188 21-60 (459)
43 1hv8_A Putative ATP-dependent 94.6 0.044 1.5E-06 50.4 5.7 37 152-188 46-84 (367)
44 1wp9_A ATP-dependent RNA helic 94.6 0.03 1E-06 52.7 4.7 36 152-187 25-61 (494)
45 1xjc_A MOBB protein homolog; s 94.5 0.085 2.9E-06 46.4 7.3 35 152-186 6-40 (169)
46 1xp8_A RECA protein, recombina 94.5 0.075 2.5E-06 52.0 7.5 82 150-234 74-164 (366)
47 2v6i_A RNA helicase; membrane, 94.5 0.055 1.9E-06 53.2 6.5 39 150-188 2-41 (431)
48 1u94_A RECA protein, recombina 94.4 0.098 3.4E-06 50.9 8.2 82 150-234 63-153 (356)
49 3oiy_A Reverse gyrase helicase 94.3 0.07 2.4E-06 51.0 6.8 36 152-187 38-73 (414)
50 1w36_D RECD, exodeoxyribonucle 94.1 0.034 1.2E-06 57.5 4.5 39 149-187 163-205 (608)
51 2kjq_A DNAA-related protein; s 94.0 0.12 4E-06 43.7 6.8 71 10-105 46-122 (149)
52 3e1s_A Exodeoxyribonuclease V, 93.9 0.021 7E-07 59.0 2.4 90 10-105 214-313 (574)
53 2whx_A Serine protease/ntpase/ 93.9 0.067 2.3E-06 55.6 6.2 39 149-187 185-224 (618)
54 3upu_A ATP-dependent DNA helic 93.9 0.063 2.2E-06 53.1 5.6 96 9-105 54-162 (459)
55 2qgz_A Helicase loader, putati 93.9 0.041 1.4E-06 52.0 4.0 36 151-186 153-189 (308)
56 2z0m_A 337AA long hypothetical 93.8 0.075 2.6E-06 48.3 5.6 34 151-187 32-65 (337)
57 3kl4_A SRP54, signal recogniti 93.7 0.046 1.6E-06 54.9 4.4 37 150-186 97-133 (433)
58 1vec_A ATP-dependent RNA helic 93.7 0.22 7.5E-06 42.5 8.1 38 151-188 41-81 (206)
59 2zts_A Putative uncharacterize 93.7 0.15 5.1E-06 44.5 7.2 38 150-187 30-68 (251)
60 3e70_C DPA, signal recognition 93.5 0.2 6.9E-06 48.1 8.3 134 149-306 128-282 (328)
61 2pl3_A Probable ATP-dependent 93.3 0.17 5.7E-06 44.5 6.9 37 151-187 63-106 (236)
62 2r8r_A Sensor protein; KDPD, P 93.2 0.52 1.8E-05 43.5 10.3 34 153-186 9-42 (228)
63 3iuy_A Probable ATP-dependent 93.1 0.093 3.2E-06 46.0 4.8 37 152-188 59-104 (228)
64 2wv9_A Flavivirin protease NS2 93.1 0.12 4.2E-06 54.3 6.6 40 149-188 240-280 (673)
65 2yvu_A Probable adenylyl-sulfa 93.0 0.098 3.4E-06 44.5 4.7 36 150-185 13-48 (186)
66 1s2m_A Putative ATP-dependent 93.0 0.12 4.1E-06 48.5 5.7 35 153-187 61-98 (400)
67 2v3c_C SRP54, signal recogniti 93.0 0.12 4.3E-06 51.5 6.1 82 151-234 100-192 (432)
68 3a8t_A Adenylate isopentenyltr 92.9 0.17 5.8E-06 49.4 6.8 24 150-173 40-63 (339)
69 3pey_A ATP-dependent RNA helic 92.9 0.087 3E-06 48.8 4.6 38 151-188 45-85 (395)
70 2qby_A CDC6 homolog 1, cell di 92.9 0.051 1.7E-06 50.4 3.0 36 150-185 45-83 (386)
71 2chg_A Replication factor C sm 92.9 0.094 3.2E-06 44.1 4.4 25 153-177 41-65 (226)
72 2va8_A SSO2462, SKI2-type heli 92.8 0.13 4.4E-06 53.3 6.2 39 150-188 46-85 (715)
73 3lw7_A Adenylate kinase relate 92.7 0.082 2.8E-06 43.2 3.6 27 152-182 3-29 (179)
74 3syl_A Protein CBBX; photosynt 92.6 0.3 1E-05 44.5 7.7 27 152-178 69-95 (309)
75 2ewv_A Twitching motility prot 92.6 0.78 2.7E-05 44.5 11.1 37 149-185 135-172 (372)
76 2dr3_A UPF0273 protein PH0284; 92.4 0.13 4.3E-06 45.0 4.7 38 150-187 23-60 (247)
77 2z0h_A DTMP kinase, thymidylat 92.4 0.13 4.5E-06 43.5 4.7 33 153-185 3-35 (197)
78 1fnn_A CDC6P, cell division co 92.4 0.16 5.6E-06 47.3 5.7 34 152-185 46-80 (389)
79 2zj8_A DNA helicase, putative 92.3 0.21 7.1E-06 52.0 6.9 38 150-187 39-77 (720)
80 4a2p_A RIG-I, retinoic acid in 92.3 0.14 4.7E-06 50.2 5.3 38 151-188 23-65 (556)
81 1sxj_A Activator 1 95 kDa subu 92.3 0.22 7.7E-06 50.0 6.9 33 151-186 78-110 (516)
82 3eiq_A Eukaryotic initiation f 92.2 0.11 3.9E-06 48.7 4.4 37 152-188 79-118 (414)
83 3dm5_A SRP54, signal recogniti 92.1 0.068 2.3E-06 53.9 2.9 40 150-191 100-139 (443)
84 1nks_A Adenylate kinase; therm 92.1 0.11 3.8E-06 43.5 3.9 33 152-184 3-35 (194)
85 1z63_A Helicase of the SNF2/RA 92.1 0.39 1.3E-05 47.1 8.3 35 153-187 59-95 (500)
86 3tbk_A RIG-I helicase domain; 92.0 0.14 4.7E-06 49.9 4.9 37 151-187 20-61 (555)
87 1ex7_A Guanylate kinase; subst 92.0 0.13 4.3E-06 45.7 4.2 19 152-171 3-21 (186)
88 1qde_A EIF4A, translation init 91.9 0.11 3.7E-06 45.2 3.6 36 152-187 53-91 (224)
89 3bos_A Putative DNA replicatio 91.8 0.59 2E-05 40.1 8.2 36 70-105 102-145 (242)
90 1t6n_A Probable ATP-dependent 91.6 0.31 1.1E-05 42.2 6.3 36 152-187 53-91 (220)
91 3uie_A Adenylyl-sulfate kinase 91.6 0.17 5.8E-06 43.8 4.5 33 150-182 25-57 (200)
92 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.15 5E-06 49.8 4.3 33 151-186 124-156 (331)
93 2v1u_A Cell division control p 91.5 0.32 1.1E-05 45.1 6.6 27 151-177 45-71 (387)
94 2ykg_A Probable ATP-dependent 91.4 0.16 5.4E-06 51.9 4.8 38 150-187 28-70 (696)
95 3u61_B DNA polymerase accessor 91.4 0.26 8.9E-06 45.5 5.8 65 151-234 49-117 (324)
96 2p6r_A Afuhel308 helicase; pro 91.3 0.14 4.7E-06 53.2 4.3 39 150-188 40-78 (702)
97 1wrb_A DJVLGB; RNA helicase, D 91.3 0.39 1.3E-05 42.7 6.7 36 152-187 62-109 (253)
98 3dmq_A RNA polymerase-associat 91.3 0.33 1.1E-05 52.9 7.3 35 153-187 173-209 (968)
99 2qor_A Guanylate kinase; phosp 91.2 0.11 3.7E-06 45.2 2.8 24 149-173 11-34 (204)
100 3fho_A ATP-dependent RNA helic 91.2 0.14 4.8E-06 51.1 4.0 38 151-188 159-199 (508)
101 1xti_A Probable ATP-dependent 91.1 0.39 1.3E-05 44.6 6.8 37 151-187 46-85 (391)
102 3cmw_A Protein RECA, recombina 91.1 0.52 1.8E-05 54.7 9.0 81 151-234 733-822 (1706)
103 2pez_A Bifunctional 3'-phospho 91.1 0.23 7.8E-06 41.9 4.7 36 150-185 5-40 (179)
104 1nn5_A Similar to deoxythymidy 91.0 0.23 8E-06 42.5 4.7 36 150-185 9-44 (215)
105 1qhx_A CPT, protein (chloramph 90.9 0.076 2.6E-06 44.5 1.6 17 151-167 4-20 (178)
106 1fuu_A Yeast initiation factor 90.8 0.18 6E-06 47.0 4.1 35 153-187 61-98 (394)
107 2pbr_A DTMP kinase, thymidylat 90.7 0.25 8.5E-06 41.5 4.6 32 153-184 3-34 (195)
108 1njg_A DNA polymerase III subu 90.7 0.22 7.6E-06 42.1 4.3 23 152-174 47-69 (250)
109 3bor_A Human initiation factor 90.7 0.19 6.4E-06 44.7 4.0 35 153-187 70-107 (237)
110 3pfi_A Holliday junction ATP-d 90.6 0.83 2.8E-05 42.3 8.5 61 153-234 58-118 (338)
111 2wwf_A Thymidilate kinase, put 90.5 0.27 9.4E-06 42.1 4.8 36 150-185 10-45 (212)
112 1u0l_A Probable GTPase ENGC; p 90.5 0.28 9.5E-06 45.9 5.1 84 83-171 100-189 (301)
113 4gl2_A Interferon-induced heli 90.4 0.073 2.5E-06 54.5 1.1 38 151-188 23-66 (699)
114 1zp6_A Hypothetical protein AT 90.4 0.097 3.3E-06 44.3 1.7 22 149-171 8-29 (191)
115 3eph_A TRNA isopentenyltransfe 90.3 0.19 6.5E-06 50.3 4.0 23 152-174 4-26 (409)
116 2i4i_A ATP-dependent RNA helic 90.3 0.46 1.6E-05 44.7 6.5 37 151-187 53-110 (417)
117 4b3f_X DNA-binding protein smu 90.3 0.22 7.6E-06 51.4 4.7 38 150-187 205-242 (646)
118 2j0s_A ATP-dependent RNA helic 90.3 0.28 9.5E-06 46.3 5.0 36 152-187 76-114 (410)
119 1rif_A DAR protein, DNA helica 90.2 0.67 2.3E-05 42.1 7.4 105 6-112 134-264 (282)
120 3fmp_B ATP-dependent RNA helic 90.0 0.18 6E-06 49.3 3.5 37 151-187 132-171 (479)
121 3l9o_A ATP-dependent RNA helic 90.0 0.17 5.8E-06 56.2 3.7 39 150-188 199-237 (1108)
122 1m7g_A Adenylylsulfate kinase; 90.0 0.29 9.8E-06 42.7 4.5 36 150-185 25-61 (211)
123 1ofh_A ATP-dependent HSL prote 89.7 0.72 2.5E-05 41.5 7.1 33 151-186 51-83 (310)
124 3cmu_A Protein RECA, recombina 89.6 1.4 4.9E-05 52.0 11.0 132 151-312 733-877 (2050)
125 1gm5_A RECG; helicase, replica 89.5 0.56 1.9E-05 50.2 7.1 36 152-187 391-426 (780)
126 4a4z_A Antiviral helicase SKI2 89.5 0.49 1.7E-05 51.9 6.8 39 150-188 54-92 (997)
127 2ehv_A Hypothetical protein PH 89.5 0.33 1.1E-05 42.4 4.6 37 149-185 29-66 (251)
128 3pvs_A Replication-associated 89.5 0.51 1.8E-05 47.0 6.4 21 153-174 53-73 (447)
129 2plr_A DTMP kinase, probable t 89.4 0.25 8.5E-06 42.1 3.6 32 151-183 5-36 (213)
130 4a2q_A RIG-I, retinoic acid in 89.4 0.27 9.1E-06 51.9 4.5 38 151-188 264-306 (797)
131 1kht_A Adenylate kinase; phosp 89.3 0.3 1E-05 40.9 3.9 28 151-178 4-31 (192)
132 1cr0_A DNA primase/helicase; R 89.3 0.33 1.1E-05 44.5 4.6 39 149-187 34-73 (296)
133 3crm_A TRNA delta(2)-isopenten 89.1 0.28 9.7E-06 47.4 4.1 22 152-173 7-28 (323)
134 2xgj_A ATP-dependent RNA helic 89.1 0.39 1.3E-05 52.8 5.7 37 151-187 102-138 (1010)
135 1hqc_A RUVB; extended AAA-ATPa 89.0 0.81 2.8E-05 41.8 7.0 63 151-234 39-102 (324)
136 3o8b_A HCV NS3 protease/helica 88.9 0.86 2.9E-05 48.1 7.9 36 149-187 231-266 (666)
137 1wp9_A ATP-dependent RNA helic 88.9 1.9 6.3E-05 40.4 9.5 31 7-37 30-61 (494)
138 3exa_A TRNA delta(2)-isopenten 88.8 0.18 6.1E-06 49.0 2.4 24 151-174 4-27 (322)
139 3cmw_A Protein RECA, recombina 88.8 0.82 2.8E-05 53.1 8.2 81 151-234 384-473 (1706)
140 4eaq_A DTMP kinase, thymidylat 88.7 0.3 1E-05 43.9 3.8 35 149-184 25-59 (229)
141 1gtv_A TMK, thymidylate kinase 88.7 0.14 4.7E-06 44.1 1.5 34 152-185 2-35 (214)
142 2px0_A Flagellar biosynthesis 88.7 0.37 1.3E-05 45.3 4.6 38 149-186 104-142 (296)
143 4dzz_A Plasmid partitioning pr 88.7 0.46 1.6E-05 40.4 4.7 78 154-233 6-86 (206)
144 2v54_A DTMP kinase, thymidylat 88.6 0.21 7.3E-06 42.5 2.6 33 150-184 4-36 (204)
145 2cvh_A DNA repair and recombin 88.6 0.44 1.5E-05 40.9 4.6 34 150-186 20-53 (220)
146 3foz_A TRNA delta(2)-isopenten 88.4 0.14 4.8E-06 49.6 1.4 24 150-173 10-33 (316)
147 1p5z_B DCK, deoxycytidine kina 88.4 0.17 5.9E-06 45.8 1.9 36 134-169 8-43 (263)
148 2oca_A DAR protein, ATP-depend 88.4 0.42 1.4E-05 46.9 4.8 103 7-110 135-262 (510)
149 2r2a_A Uncharacterized protein 88.3 0.55 1.9E-05 41.8 5.1 36 72-107 87-132 (199)
150 2bdt_A BH3686; alpha-beta prot 88.2 0.17 5.7E-06 43.1 1.7 21 150-171 2-22 (189)
151 1vma_A Cell division protein F 88.2 0.41 1.4E-05 45.5 4.5 37 150-186 104-140 (306)
152 2jlq_A Serine protease subunit 88.1 0.85 2.9E-05 44.8 6.9 29 9-37 28-57 (451)
153 3rc3_A ATP-dependent RNA helic 88.0 0.81 2.8E-05 48.2 7.0 35 149-187 154-188 (677)
154 3vkw_A Replicase large subunit 87.9 0.076 2.6E-06 53.7 -0.8 87 10-105 171-267 (446)
155 1yrb_A ATP(GTP)binding protein 87.8 0.5 1.7E-05 41.9 4.6 35 151-186 15-49 (262)
156 1um8_A ATP-dependent CLP prote 87.8 1.6 5.5E-05 41.3 8.4 32 151-185 73-104 (376)
157 1np6_A Molybdopterin-guanine d 87.7 0.53 1.8E-05 41.0 4.6 35 152-186 8-42 (174)
158 1l8q_A Chromosomal replication 87.7 0.43 1.5E-05 44.2 4.2 35 71-105 97-138 (324)
159 4eun_A Thermoresistant glucoki 87.6 0.45 1.5E-05 41.1 4.0 25 150-174 29-53 (200)
160 1sxj_B Activator 1 37 kDa subu 87.5 0.48 1.6E-05 42.9 4.4 22 153-174 45-66 (323)
161 4gp7_A Metallophosphoesterase; 87.5 0.21 7.1E-06 42.5 1.8 21 149-169 8-28 (171)
162 3kb2_A SPBC2 prophage-derived 87.5 0.33 1.1E-05 39.9 3.0 22 152-173 3-24 (173)
163 3cmu_A Protein RECA, recombina 87.5 0.67 2.3E-05 54.7 6.5 81 151-234 384-473 (2050)
164 1kag_A SKI, shikimate kinase I 87.5 0.21 7.3E-06 41.5 1.8 19 151-169 5-23 (173)
165 2v6i_A RNA helicase; membrane, 87.4 1.4 4.7E-05 43.2 7.8 30 8-37 10-40 (431)
166 1sxj_C Activator 1 40 kDa subu 87.3 0.2 6.9E-06 47.0 1.7 22 153-174 49-70 (340)
167 2gno_A DNA polymerase III, gam 87.2 0.84 2.9E-05 43.1 6.0 22 151-172 19-40 (305)
168 3a4m_A L-seryl-tRNA(SEC) kinas 87.2 0.53 1.8E-05 42.8 4.5 33 152-184 6-38 (260)
169 2zr9_A Protein RECA, recombina 87.2 1.6 5.3E-05 42.1 7.9 97 9-108 70-198 (349)
170 4ddu_A Reverse gyrase; topoiso 87.0 0.67 2.3E-05 51.4 5.9 38 151-188 94-131 (1104)
171 3b9q_A Chloroplast SRP recepto 87.0 0.54 1.8E-05 44.4 4.5 37 149-185 99-135 (302)
172 4edh_A DTMP kinase, thymidylat 86.8 0.58 2E-05 41.9 4.4 38 150-187 6-43 (213)
173 2db3_A ATP-dependent RNA helic 86.6 1.3 4.5E-05 43.0 7.1 37 151-187 94-138 (434)
174 1gku_B Reverse gyrase, TOP-RG; 86.5 0.86 2.9E-05 50.2 6.4 38 151-188 72-109 (1054)
175 2whx_A Serine protease/ntpase/ 86.5 1.4 4.9E-05 45.6 7.8 29 9-37 195-224 (618)
176 3hjn_A DTMP kinase, thymidylat 86.4 0.62 2.1E-05 41.0 4.3 34 154-187 4-37 (197)
177 1xwi_A SKD1 protein; VPS4B, AA 86.3 0.69 2.3E-05 43.6 4.8 69 151-234 46-117 (322)
178 1e9r_A Conjugal transfer prote 86.3 0.56 1.9E-05 45.5 4.3 39 152-190 55-93 (437)
179 1knq_A Gluconate kinase; ALFA/ 86.2 0.6 2.1E-05 38.9 4.0 20 150-169 8-27 (175)
180 2chq_A Replication factor C sm 86.2 0.48 1.6E-05 42.8 3.6 21 153-173 41-61 (319)
181 3uk6_A RUVB-like 2; hexameric 86.1 0.51 1.7E-05 44.1 3.8 24 150-174 70-93 (368)
182 4ag6_A VIRB4 ATPase, type IV s 86.1 0.63 2.1E-05 44.6 4.5 39 150-188 35-73 (392)
183 3vaa_A Shikimate kinase, SK; s 86.1 0.43 1.5E-05 41.2 3.1 25 150-174 25-49 (199)
184 3vfd_A Spastin; ATPase, microt 86.1 0.66 2.2E-05 44.5 4.7 33 151-186 149-181 (389)
185 4a2w_A RIG-I, retinoic acid in 86.1 0.3 1E-05 52.9 2.5 38 151-188 264-306 (936)
186 3h4m_A Proteasome-activating n 85.9 0.43 1.5E-05 43.0 3.1 68 152-234 53-122 (285)
187 2qz4_A Paraplegin; AAA+, SPG7, 85.9 0.54 1.9E-05 41.5 3.7 67 152-234 41-110 (262)
188 1jjv_A Dephospho-COA kinase; P 85.8 0.25 8.5E-06 42.6 1.4 16 152-167 4-19 (206)
189 1in4_A RUVB, holliday junction 85.7 1.1 3.7E-05 42.2 5.9 22 151-173 52-73 (334)
190 2j41_A Guanylate kinase; GMP, 85.7 0.31 1E-05 41.5 1.9 22 150-172 6-27 (207)
191 2eyu_A Twitching motility prot 85.6 0.83 2.9E-05 42.1 4.9 37 149-185 24-61 (261)
192 1y63_A LMAJ004144AAA protein; 85.6 0.28 9.6E-06 41.9 1.6 19 150-168 10-28 (184)
193 3tr0_A Guanylate kinase, GMP k 85.5 0.32 1.1E-05 41.5 1.9 24 149-173 6-29 (205)
194 2zu0_C Probable ATP-dependent 85.4 0.4 1.4E-05 44.3 2.7 54 118-172 10-67 (267)
195 1vht_A Dephospho-COA kinase; s 85.3 0.59 2E-05 40.6 3.6 27 152-182 6-32 (218)
196 1rj9_A FTSY, signal recognitio 85.2 0.65 2.2E-05 43.9 4.1 38 149-186 101-138 (304)
197 2rhm_A Putative kinase; P-loop 85.2 0.5 1.7E-05 39.7 3.0 22 151-172 6-27 (193)
198 3cm0_A Adenylate kinase; ATP-b 85.2 0.48 1.6E-05 39.8 2.8 24 151-174 5-28 (186)
199 1zu4_A FTSY; GTPase, signal re 85.1 0.75 2.6E-05 43.8 4.5 36 150-185 105-140 (320)
200 3bh0_A DNAB-like replicative h 85.1 0.81 2.8E-05 43.0 4.7 40 149-188 67-106 (315)
201 2z83_A Helicase/nucleoside tri 85.1 1.7 5.7E-05 42.9 7.2 29 9-37 30-59 (459)
202 2jaq_A Deoxyguanosine kinase; 85.0 0.51 1.8E-05 39.8 3.0 22 153-174 3-24 (205)
203 3trf_A Shikimate kinase, SK; a 84.9 0.55 1.9E-05 39.5 3.1 24 151-174 6-29 (185)
204 1yks_A Genome polyprotein [con 84.8 2 6.7E-05 42.2 7.5 29 9-37 17-46 (440)
205 1zak_A Adenylate kinase; ATP:A 84.8 0.46 1.6E-05 41.6 2.6 23 152-174 7-29 (222)
206 3sqw_A ATP-dependent RNA helic 84.6 1.1 3.8E-05 45.1 5.8 38 150-187 60-104 (579)
207 3v9p_A DTMP kinase, thymidylat 84.6 0.92 3.1E-05 41.3 4.6 37 150-186 25-65 (227)
208 3ec2_A DNA replication protein 84.6 1.3 4.5E-05 37.2 5.3 36 70-105 98-140 (180)
209 3iuy_A Probable ATP-dependent 84.5 1.9 6.5E-05 37.4 6.5 15 70-84 165-179 (228)
210 1jr3_A DNA polymerase III subu 84.5 1.7 5.7E-05 40.3 6.5 22 152-173 40-61 (373)
211 2og2_A Putative signal recogni 84.2 0.85 2.9E-05 44.4 4.5 37 149-185 156-192 (359)
212 1rz3_A Hypothetical protein rb 84.2 0.98 3.4E-05 39.1 4.5 35 150-184 22-56 (201)
213 2fwr_A DNA repair protein RAD2 84.1 1.1 3.8E-05 43.4 5.3 76 7-85 115-205 (472)
214 2wsm_A Hydrogenase expression/ 84.1 1.6 5.4E-05 37.5 5.8 34 152-186 32-65 (221)
215 1n0w_A DNA repair protein RAD5 84.0 0.68 2.3E-05 40.3 3.4 37 150-186 24-66 (243)
216 3n70_A Transport activator; si 83.8 0.87 3E-05 37.4 3.8 22 152-174 26-47 (145)
217 2ze6_A Isopentenyl transferase 83.7 0.59 2E-05 42.5 3.0 22 152-173 3-24 (253)
218 2l8b_A Protein TRAI, DNA helic 83.7 2.1 7.3E-05 38.6 6.5 116 150-322 51-174 (189)
219 2z4s_A Chromosomal replication 83.5 0.77 2.6E-05 45.3 4.0 34 72-105 194-234 (440)
220 1a5t_A Delta prime, HOLB; zinc 83.5 1.3 4.5E-05 41.7 5.4 23 152-174 26-48 (334)
221 3lv8_A DTMP kinase, thymidylat 83.4 1.2 4.1E-05 40.7 4.9 37 150-186 27-64 (236)
222 3ld9_A DTMP kinase, thymidylat 83.4 0.82 2.8E-05 41.6 3.8 38 149-186 20-59 (223)
223 1qvr_A CLPB protein; coiled co 83.4 1.1 3.6E-05 48.0 5.2 21 153-174 194-214 (854)
224 3mwy_W Chromo domain-containin 83.3 1.6 5.5E-05 46.2 6.5 34 153-186 258-294 (800)
225 4tmk_A Protein (thymidylate ki 83.3 1.3 4.3E-05 39.8 4.9 37 150-186 3-40 (213)
226 1ly1_A Polynucleotide kinase; 83.3 0.39 1.3E-05 39.8 1.4 16 152-167 4-19 (181)
227 1kgd_A CASK, peripheral plasma 83.2 0.58 2E-05 39.9 2.5 22 149-170 4-25 (180)
228 3hr8_A Protein RECA; alpha and 83.1 2.4 8.2E-05 41.2 7.2 121 9-132 70-228 (356)
229 3iij_A Coilin-interacting nucl 83.1 0.62 2.1E-05 39.1 2.7 24 151-174 12-35 (180)
230 1nij_A Hypothetical protein YJ 83.1 0.58 2E-05 44.1 2.8 36 151-188 5-40 (318)
231 1sxj_E Activator 1 40 kDa subu 83.1 0.78 2.7E-05 42.5 3.6 20 153-172 39-58 (354)
232 1aky_A Adenylate kinase; ATP:A 83.0 0.61 2.1E-05 40.7 2.7 24 151-174 5-28 (220)
233 1j8m_F SRP54, signal recogniti 83.0 1.2 4.1E-05 41.9 4.9 37 150-186 98-134 (297)
234 1iqp_A RFCS; clamp loader, ext 82.8 0.43 1.5E-05 43.3 1.6 22 153-174 49-70 (327)
235 2yhs_A FTSY, cell division pro 82.8 1 3.5E-05 46.2 4.5 36 149-184 292-327 (503)
236 2fz4_A DNA repair protein RAD2 82.6 1.4 4.6E-05 39.6 4.9 75 8-85 116-205 (237)
237 3lfu_A DNA helicase II; SF1 he 82.4 0.98 3.3E-05 45.7 4.3 38 150-187 22-63 (647)
238 3t61_A Gluconokinase; PSI-biol 82.4 0.72 2.5E-05 39.6 2.9 24 151-174 19-42 (202)
239 2if2_A Dephospho-COA kinase; a 82.4 0.42 1.4E-05 40.9 1.4 15 153-167 4-18 (204)
240 4a1f_A DNAB helicase, replicat 82.2 1.4 4.9E-05 42.6 5.1 40 149-188 45-84 (338)
241 4a74_A DNA repair and recombin 82.2 0.84 2.9E-05 39.3 3.2 37 150-186 25-67 (231)
242 3tau_A Guanylate kinase, GMP k 82.2 0.52 1.8E-05 41.2 1.9 24 149-172 7-30 (208)
243 2wv9_A Flavivirin protease NS2 82.0 3.2 0.00011 43.6 8.1 29 9-37 250-279 (673)
244 1htw_A HI0065; nucleotide-bind 82.0 0.55 1.9E-05 40.2 1.9 24 149-173 32-55 (158)
245 3kta_A Chromosome segregation 81.9 1 3.4E-05 37.8 3.5 28 145-173 21-48 (182)
246 1w5s_A Origin recognition comp 81.9 0.24 8.3E-06 46.6 -0.4 35 151-185 51-93 (412)
247 1nlf_A Regulatory protein REPA 81.9 1.1 3.9E-05 40.6 4.1 27 149-175 29-55 (279)
248 2c95_A Adenylate kinase 1; tra 81.7 0.87 3E-05 38.3 3.1 23 151-173 10-32 (196)
249 1znw_A Guanylate kinase, GMP k 81.7 0.56 1.9E-05 40.8 1.9 24 149-173 19-42 (207)
250 3bgw_A DNAB-like replicative h 81.6 1.4 4.9E-05 43.7 5.1 40 149-188 196-235 (444)
251 2w0m_A SSO2452; RECA, SSPF, un 81.6 0.64 2.2E-05 39.8 2.2 120 9-134 32-192 (235)
252 3c8u_A Fructokinase; YP_612366 81.3 1.7 5.9E-05 37.6 5.0 30 150-179 22-51 (208)
253 2bbw_A Adenylate kinase 4, AK4 81.2 0.9 3.1E-05 40.5 3.1 25 150-174 27-51 (246)
254 3oiy_A Reverse gyrase helicase 81.1 5.5 0.00019 37.7 8.8 30 8-37 44-73 (414)
255 1e4v_A Adenylate kinase; trans 81.1 0.78 2.7E-05 39.9 2.6 22 153-174 3-24 (214)
256 2xb4_A Adenylate kinase; ATP-b 81.0 1.1 3.7E-05 39.5 3.6 22 153-174 3-24 (223)
257 4e22_A Cytidylate kinase; P-lo 81.0 0.54 1.8E-05 42.6 1.6 22 150-171 27-48 (252)
258 3fb4_A Adenylate kinase; psych 80.9 0.82 2.8E-05 39.5 2.7 22 153-174 3-24 (216)
259 3b9p_A CG5977-PA, isoform A; A 80.9 1.4 4.8E-05 39.9 4.4 33 150-185 54-86 (297)
260 3be4_A Adenylate kinase; malar 80.9 1.1 3.8E-05 39.2 3.6 23 152-174 7-29 (217)
261 2w00_A HSDR, R.ECOR124I; ATP-b 80.7 1.8 6E-05 47.9 5.8 38 152-189 302-341 (1038)
262 3a00_A Guanylate kinase, GMP k 80.6 0.64 2.2E-05 39.7 1.9 22 151-173 2-23 (186)
263 2r6a_A DNAB helicase, replicat 80.6 1.5 5E-05 43.3 4.7 40 149-188 202-242 (454)
264 1via_A Shikimate kinase; struc 80.6 0.86 3E-05 38.2 2.6 22 152-173 6-27 (175)
265 3umf_A Adenylate kinase; rossm 80.5 1 3.6E-05 40.7 3.3 25 150-174 29-53 (217)
266 1uf9_A TT1252 protein; P-loop, 80.4 0.55 1.9E-05 39.8 1.3 16 152-167 10-25 (203)
267 3hu3_A Transitional endoplasmi 80.4 1.5 5.2E-05 44.2 4.8 66 153-234 241-309 (489)
268 2oap_1 GSPE-2, type II secreti 80.3 1.2 4.3E-05 45.2 4.2 34 150-184 260-293 (511)
269 1ukz_A Uridylate kinase; trans 80.3 0.91 3.1E-05 38.8 2.7 20 151-170 16-35 (203)
270 2bwj_A Adenylate kinase 5; pho 80.2 1 3.4E-05 38.0 2.9 23 151-173 13-35 (199)
271 3tif_A Uncharacterized ABC tra 80.1 0.67 2.3E-05 41.9 1.9 23 149-172 30-52 (235)
272 2z43_A DNA repair and recombin 80.0 1 3.6E-05 42.3 3.3 39 150-188 107-151 (324)
273 3h1t_A Type I site-specific re 80.0 3.4 0.00012 41.5 7.3 31 7-37 205-244 (590)
274 1p9r_A General secretion pathw 79.9 0.92 3.2E-05 45.0 3.0 67 119-185 134-202 (418)
275 2gk6_A Regulator of nonsense t 79.9 1.3 4.3E-05 45.8 4.1 39 150-188 195-234 (624)
276 2r62_A Cell division protease 79.8 1.3 4.5E-05 39.4 3.8 20 153-173 47-66 (268)
277 2l8b_A Protein TRAI, DNA helic 79.8 3.1 0.00011 37.5 6.1 102 11-125 62-173 (189)
278 4fcw_A Chaperone protein CLPB; 79.6 1.2 4.2E-05 40.3 3.5 34 151-185 48-82 (311)
279 4dzz_A Plasmid partitioning pr 79.6 1.6 5.6E-05 36.9 4.1 93 10-106 12-107 (206)
280 3lnc_A Guanylate kinase, GMP k 79.5 0.63 2.2E-05 41.0 1.5 21 150-170 27-47 (231)
281 1tev_A UMP-CMP kinase; ploop, 79.4 1.1 3.8E-05 37.3 3.0 18 152-169 5-22 (196)
282 2pcj_A ABC transporter, lipopr 79.4 0.71 2.4E-05 41.4 1.8 23 149-172 29-51 (224)
283 1f2t_A RAD50 ABC-ATPase; DNA d 79.3 1.2 4.2E-05 37.3 3.2 25 148-173 21-45 (149)
284 1qf9_A UMP/CMP kinase, protein 79.3 1.1 3.8E-05 37.2 2.9 18 152-169 8-25 (194)
285 1ak2_A Adenylate kinase isoenz 79.3 0.97 3.3E-05 40.0 2.7 24 151-174 17-40 (233)
286 1zd8_A GTP:AMP phosphotransfer 79.3 0.75 2.6E-05 40.4 1.9 22 151-172 8-29 (227)
287 1sxj_D Activator 1 41 kDa subu 79.1 2.4 8.2E-05 38.9 5.4 22 153-174 61-82 (353)
288 3b6e_A Interferon-induced heli 79.1 1.1 3.6E-05 38.1 2.8 38 151-188 49-92 (216)
289 1ls1_A Signal recognition part 79.1 1.8 6E-05 40.6 4.5 38 149-186 97-134 (295)
290 2vp4_A Deoxynucleoside kinase; 79.0 0.88 3E-05 40.3 2.3 31 150-184 20-50 (230)
291 3d3q_A TRNA delta(2)-isopenten 78.9 6.5 0.00022 38.1 8.6 23 152-174 9-31 (340)
292 2cdn_A Adenylate kinase; phosp 78.9 1.2 4E-05 38.2 3.0 24 151-174 21-44 (201)
293 1s96_A Guanylate kinase, GMP k 78.9 0.78 2.7E-05 41.2 1.9 24 149-173 15-38 (219)
294 1v5w_A DMC1, meiotic recombina 78.8 1.2 4.1E-05 42.4 3.3 74 113-188 86-166 (343)
295 2qp9_X Vacuolar protein sortin 78.7 1.4 4.7E-05 42.0 3.7 67 152-234 86-155 (355)
296 3eie_A Vacuolar protein sortin 78.6 1.1 3.9E-05 41.7 3.0 68 151-234 52-122 (322)
297 2i3b_A HCR-ntpase, human cance 78.6 1.5 5E-05 38.5 3.6 28 151-178 2-29 (189)
298 1cke_A CK, MSSA, protein (cyti 78.5 1.2 4.1E-05 38.5 3.0 21 152-172 7-27 (227)
299 3dl0_A Adenylate kinase; phosp 78.4 0.85 2.9E-05 39.4 2.0 21 153-173 3-23 (216)
300 1zuh_A Shikimate kinase; alpha 78.3 1.3 4.5E-05 36.7 3.0 18 151-168 8-25 (168)
301 1z6g_A Guanylate kinase; struc 78.3 0.81 2.8E-05 40.5 1.8 26 149-174 22-47 (218)
302 1c9k_A COBU, adenosylcobinamid 78.2 1.8 6E-05 38.4 4.0 77 153-234 2-85 (180)
303 3b85_A Phosphate starvation-in 78.1 0.95 3.3E-05 40.3 2.2 24 149-173 21-44 (208)
304 1d2n_A N-ethylmaleimide-sensit 78.1 1.7 5.8E-05 39.1 3.9 69 152-234 66-136 (272)
305 3nwj_A ATSK2; P loop, shikimat 78.0 1.2 4.2E-05 40.9 3.0 23 150-172 48-70 (250)
306 2q6t_A DNAB replication FORK h 78.0 2.1 7E-05 42.1 4.8 39 150-188 200-239 (444)
307 1gvn_B Zeta; postsegregational 77.8 1.1 3.9E-05 41.6 2.8 21 150-170 33-53 (287)
308 3asz_A Uridine kinase; cytidin 77.7 0.9 3.1E-05 39.1 1.9 18 150-167 6-23 (211)
309 1sgw_A Putative ABC transporte 77.7 0.86 2.9E-05 40.9 1.8 22 149-171 34-55 (214)
310 2pt5_A Shikimate kinase, SK; a 77.7 1.2 4.2E-05 36.6 2.6 18 153-170 3-20 (168)
311 1lvg_A Guanylate kinase, GMP k 77.6 1.3 4.5E-05 38.4 2.9 25 150-174 4-28 (198)
312 2vli_A Antibiotic resistance p 77.6 0.98 3.3E-05 37.6 2.0 19 151-169 6-24 (183)
313 2z0m_A 337AA long hypothetical 77.5 3.7 0.00013 36.9 6.0 27 8-37 39-65 (337)
314 1ji0_A ABC transporter; ATP bi 77.4 0.91 3.1E-05 41.1 1.9 23 149-172 31-53 (240)
315 1e6c_A Shikimate kinase; phosp 77.3 1.4 4.7E-05 36.3 2.9 21 152-172 4-24 (173)
316 1m3s_A Hypothetical protein YC 77.1 6.9 0.00023 33.1 7.3 91 86-188 26-116 (186)
317 2xzl_A ATP-dependent helicase 77.1 2 7E-05 46.0 4.8 39 150-188 375-414 (802)
318 2p5t_B PEZT; postsegregational 77.1 1.1 3.6E-05 40.5 2.3 23 150-172 32-54 (253)
319 1g6h_A High-affinity branched- 77.1 0.93 3.2E-05 41.5 1.9 22 149-171 32-53 (257)
320 2r8r_A Sensor protein; KDPD, P 77.0 5.6 0.00019 36.6 7.1 88 10-104 16-123 (228)
321 3o8b_A HCV NS3 protease/helica 76.9 3.2 0.00011 43.9 6.1 26 9-37 241-266 (666)
322 2cbz_A Multidrug resistance-as 76.8 0.97 3.3E-05 40.9 1.9 19 149-167 30-48 (237)
323 3gfo_A Cobalt import ATP-bindi 76.7 0.96 3.3E-05 42.2 1.9 23 149-172 33-55 (275)
324 2v1x_A ATP-dependent DNA helic 76.7 2 7E-05 44.1 4.5 35 150-187 59-93 (591)
325 2zan_A Vacuolar protein sortin 76.6 2.1 7E-05 42.3 4.4 69 151-234 168-239 (444)
326 1b0u_A Histidine permease; ABC 76.4 1 3.4E-05 41.5 1.9 22 149-171 31-52 (262)
327 1tf7_A KAIC; homohexamer, hexa 76.4 1.9 6.5E-05 43.3 4.1 36 151-186 282-317 (525)
328 2grj_A Dephospho-COA kinase; T 76.3 0.87 3E-05 40.1 1.4 16 152-167 14-29 (192)
329 2zj8_A DNA helicase, putative 76.2 6.7 0.00023 40.6 8.3 28 10-37 49-77 (720)
330 3sr0_A Adenylate kinase; phosp 76.1 1.5 5.2E-05 39.0 3.0 22 153-174 3-24 (206)
331 2pze_A Cystic fibrosis transme 76.1 1 3.6E-05 40.4 1.9 22 149-171 33-54 (229)
332 1xp8_A RECA protein, recombina 76.1 5 0.00017 38.9 6.9 72 10-84 84-164 (366)
333 2cvh_A DNA repair and recombin 76.1 2.6 9E-05 35.9 4.4 118 9-132 29-183 (220)
334 1mv5_A LMRA, multidrug resista 76.0 1 3.5E-05 40.8 1.8 24 145-168 22-46 (243)
335 1vpl_A ABC transporter, ATP-bi 75.9 1 3.6E-05 41.4 1.9 22 149-171 40-61 (256)
336 2xxa_A Signal recognition part 75.9 2.4 8.1E-05 42.2 4.6 36 151-186 101-137 (433)
337 3p32_A Probable GTPase RV1496/ 75.8 1.8 6.2E-05 41.2 3.6 36 152-187 81-116 (355)
338 2gxq_A Heat resistant RNA depe 75.6 1.7 5.9E-05 36.7 3.1 37 151-187 39-81 (207)
339 4g1u_C Hemin import ATP-bindin 75.5 1.1 3.7E-05 41.5 1.9 23 149-172 36-58 (266)
340 1vim_A Hypothetical protein AF 75.5 7.6 0.00026 33.7 7.3 91 86-188 36-126 (200)
341 1w36_D RECD, exodeoxyribonucle 75.4 7.3 0.00025 40.1 8.3 33 72-105 262-296 (608)
342 2ff7_A Alpha-hemolysin translo 75.3 1.1 3.8E-05 40.8 1.9 22 149-171 34-55 (247)
343 2olj_A Amino acid ABC transpor 75.3 1.1 3.8E-05 41.5 1.9 36 283-328 198-233 (263)
344 2pjz_A Hypothetical protein ST 75.2 1.2 4E-05 41.3 2.0 27 143-172 25-51 (263)
345 1hv8_A Putative ATP-dependent 75.1 4.7 0.00016 36.6 6.1 31 7-37 51-83 (367)
346 2xhz_A KDSD, YRBH, arabinose 5 75.1 4.9 0.00017 33.8 5.8 95 86-188 37-133 (183)
347 2qt1_A Nicotinamide riboside k 75.1 0.99 3.4E-05 38.8 1.4 19 150-168 21-39 (207)
348 2yz2_A Putative ABC transporte 75.0 1.1 3.9E-05 41.1 1.9 22 149-171 32-53 (266)
349 2ce7_A Cell division protein F 75.0 2.8 9.5E-05 42.3 4.9 66 153-234 52-120 (476)
350 2j37_W Signal recognition part 75.0 2.5 8.4E-05 43.1 4.5 35 152-186 103-137 (504)
351 2d2e_A SUFC protein; ABC-ATPas 74.8 1.2 4E-05 40.6 1.9 23 149-172 28-50 (250)
352 2iyv_A Shikimate kinase, SK; t 74.8 1.7 5.9E-05 36.4 2.8 18 152-169 4-21 (184)
353 1xjc_A MOBB protein homolog; s 74.7 5.6 0.00019 34.6 6.2 28 10-37 14-41 (169)
354 2qm8_A GTPase/ATPase; G protei 74.5 2.7 9.4E-05 40.0 4.5 38 150-187 55-92 (337)
355 2qi9_C Vitamin B12 import ATP- 74.5 1.2 4.1E-05 40.8 1.9 36 283-328 172-207 (249)
356 2ffh_A Protein (FFH); SRP54, s 74.2 2.4 8.3E-05 42.2 4.2 38 149-186 97-134 (425)
357 3qf7_A RAD50; ABC-ATPase, ATPa 74.0 1.3 4.5E-05 42.6 2.1 27 145-172 18-44 (365)
358 2www_A Methylmalonic aciduria 74.0 3.1 0.00011 39.7 4.8 37 150-186 74-110 (349)
359 2ihy_A ABC transporter, ATP-bi 74.0 1.2 4.3E-05 41.4 1.9 43 128-171 21-67 (279)
360 3qks_A DNA double-strand break 73.9 1.6 5.4E-05 38.4 2.5 27 146-173 19-45 (203)
361 3sqw_A ATP-dependent RNA helic 73.9 23 0.00077 35.5 11.3 27 70-96 173-205 (579)
362 2ghi_A Transport protein; mult 73.8 1.3 4.4E-05 40.7 1.9 24 145-168 40-64 (260)
363 2nq2_C Hypothetical ABC transp 73.8 1.3 4.5E-05 40.6 2.0 23 149-172 30-52 (253)
364 1u94_A RECA protein, recombina 73.8 4 0.00014 39.5 5.5 95 9-106 72-198 (356)
365 2wjy_A Regulator of nonsense t 73.7 2.3 7.9E-05 45.6 4.1 39 150-188 371-410 (800)
366 1r6b_X CLPA protein; AAA+, N-t 73.6 3.3 0.00011 43.2 5.2 31 153-186 491-521 (758)
367 2pl3_A Probable ATP-dependent 73.6 8.8 0.0003 33.3 7.3 30 8-37 70-106 (236)
368 1ye8_A Protein THEP1, hypothet 73.6 1.3 4.4E-05 38.3 1.8 22 153-174 3-24 (178)
369 2ixe_A Antigen peptide transpo 73.5 1.3 4.5E-05 41.0 1.9 44 128-172 16-66 (271)
370 4hlc_A DTMP kinase, thymidylat 73.3 2.5 8.5E-05 37.4 3.6 32 154-186 6-37 (205)
371 3tlx_A Adenylate kinase 2; str 73.1 1.8 6.1E-05 38.9 2.7 23 152-174 31-53 (243)
372 3d8b_A Fidgetin-like protein 1 73.0 2 7E-05 40.8 3.2 33 151-186 118-150 (357)
373 1qde_A EIF4A, translation init 72.9 4.4 0.00015 34.8 5.1 30 8-37 59-91 (224)
374 3io5_A Recombination and repai 72.6 5.9 0.0002 38.6 6.3 104 9-116 37-179 (333)
375 3qkt_A DNA double-strand break 72.2 1.9 6.4E-05 40.8 2.7 24 148-172 21-44 (339)
376 2p67_A LAO/AO transport system 72.1 3.3 0.00011 39.2 4.4 37 150-186 56-92 (341)
377 1pzn_A RAD51, DNA repair and r 72.0 2.3 7.8E-05 40.7 3.3 71 114-186 96-173 (349)
378 3ney_A 55 kDa erythrocyte memb 72.0 1.9 6.3E-05 38.6 2.5 24 149-172 18-41 (197)
379 3lfu_A DNA helicase II; SF1 he 71.8 3.2 0.00011 41.9 4.4 34 72-105 213-247 (647)
380 2p6r_A Afuhel308 helicase; pro 71.8 7.8 0.00027 39.9 7.5 29 10-38 50-78 (702)
381 1q57_A DNA primase/helicase; d 71.7 1.8 6.3E-05 43.0 2.6 39 150-188 242-281 (503)
382 3sho_A Transcriptional regulat 71.6 7.8 0.00027 32.7 6.3 94 86-188 28-124 (187)
383 2onk_A Molybdate/tungstate ABC 71.6 1.5 5.2E-05 39.9 1.8 22 151-173 25-46 (240)
384 4b4t_J 26S protease regulatory 71.5 3.1 0.00011 41.4 4.2 68 152-234 184-253 (405)
385 1byi_A Dethiobiotin synthase; 71.4 3.8 0.00013 35.3 4.3 34 154-187 5-39 (224)
386 1uj2_A Uridine-cytidine kinase 71.0 2.2 7.5E-05 38.2 2.8 17 152-168 24-40 (252)
387 2f6r_A COA synthase, bifunctio 70.5 1.4 4.7E-05 40.7 1.3 16 152-167 77-92 (281)
388 3fe2_A Probable ATP-dependent 70.5 7.1 0.00024 34.3 6.0 92 11-105 77-215 (242)
389 3etn_A Putative phosphosugar i 70.2 12 0.0004 33.2 7.4 95 86-188 43-145 (220)
390 2va8_A SSO2462, SKI2-type heli 70.2 16 0.00055 37.6 9.4 30 9-38 55-85 (715)
391 2axn_A 6-phosphofructo-2-kinas 70.1 3.6 0.00012 41.8 4.4 36 151-186 36-71 (520)
392 3i5x_A ATP-dependent RNA helic 69.8 34 0.0012 33.6 11.4 171 11-187 122-348 (563)
393 3m6a_A ATP-dependent protease 69.8 6.5 0.00022 39.8 6.2 26 149-175 107-132 (543)
394 3dm5_A SRP54, signal recogniti 69.6 2.6 8.9E-05 42.4 3.2 73 10-84 110-194 (443)
395 3of5_A Dethiobiotin synthetase 69.4 3.9 0.00013 36.8 4.0 35 153-187 7-42 (228)
396 2f1r_A Molybdopterin-guanine d 69.4 2.7 9.2E-05 36.3 2.9 35 152-186 4-38 (171)
397 2bbs_A Cystic fibrosis transme 69.3 1.8 6.2E-05 40.7 1.9 22 149-171 63-84 (290)
398 3ly5_A ATP-dependent RNA helic 69.2 11 0.00037 33.8 7.0 30 8-37 99-135 (262)
399 1ltq_A Polynucleotide kinase; 69.1 1.6 5.5E-05 39.7 1.4 22 280-301 190-211 (301)
400 2w58_A DNAI, primosome compone 68.9 2.5 8.6E-05 35.9 2.6 34 72-105 115-156 (202)
401 3fvq_A Fe(3+) IONS import ATP- 68.8 1.8 6.3E-05 42.2 1.9 29 145-174 24-53 (359)
402 2pt7_A CAG-ALFA; ATPase, prote 68.6 1.8 6.2E-05 41.2 1.7 25 150-175 171-195 (330)
403 1uaa_A REP helicase, protein ( 68.6 4.5 0.00015 41.6 4.8 35 71-105 206-241 (673)
404 3llm_A ATP-dependent RNA helic 68.5 19 0.00063 31.6 8.3 29 9-37 85-118 (235)
405 3fxa_A SIS domain protein; str 68.3 7.2 0.00025 33.5 5.4 95 86-189 33-130 (201)
406 3kl4_A SRP54, signal recogniti 68.1 3.9 0.00013 40.9 4.1 72 10-83 107-190 (433)
407 3lda_A DNA repair protein RAD5 68.0 3.2 0.00011 40.9 3.4 37 150-186 178-220 (400)
408 2eyq_A TRCF, transcription-rep 67.9 3.5 0.00012 45.8 4.1 37 152-188 626-662 (1151)
409 2yv5_A YJEQ protein; hydrolase 67.8 6.8 0.00023 36.5 5.5 95 75-172 84-186 (302)
410 1z47_A CYSA, putative ABC-tran 67.7 2 7E-05 41.7 1.9 24 149-173 40-63 (355)
411 2yyz_A Sugar ABC transporter, 67.7 2 7E-05 41.7 1.9 25 149-174 28-52 (359)
412 3qxc_A Dethiobiotin synthetase 67.7 5.3 0.00018 36.6 4.6 45 144-188 15-60 (242)
413 3jvv_A Twitching mobility prot 67.5 31 0.001 33.2 10.2 95 10-109 133-232 (356)
414 1jeo_A MJ1247, hypothetical pr 67.4 8.5 0.00029 32.3 5.6 90 86-188 29-119 (180)
415 1q3t_A Cytidylate kinase; nucl 67.3 3.4 0.00012 36.5 3.2 18 151-168 17-34 (236)
416 2it1_A 362AA long hypothetical 67.2 2.1 7.2E-05 41.7 1.9 29 145-174 23-52 (362)
417 2gza_A Type IV secretion syste 67.1 1.9 6.6E-05 41.4 1.6 35 149-183 174-208 (361)
418 1g29_1 MALK, maltose transport 66.9 2.2 7.4E-05 41.7 1.9 25 149-174 28-52 (372)
419 1v43_A Sugar-binding transport 66.5 2.2 7.6E-05 41.7 1.9 25 149-174 36-60 (372)
420 3te6_A Regulatory protein SIR3 66.0 2.5 8.5E-05 40.5 2.1 25 152-176 47-71 (318)
421 3rlf_A Maltose/maltodextrin im 66.0 2.3 7.9E-05 41.9 1.9 25 149-174 28-52 (381)
422 3pxi_A Negative regulator of g 65.9 8.8 0.0003 40.1 6.4 67 153-234 524-591 (758)
423 3pey_A ATP-dependent RNA helic 65.8 13 0.00043 34.1 6.8 30 8-37 52-84 (395)
424 1m8p_A Sulfate adenylyltransfe 65.6 5.3 0.00018 41.1 4.6 34 152-185 398-432 (573)
425 3ake_A Cytidylate kinase; CMP 65.6 3.8 0.00013 34.6 3.0 18 152-169 4-21 (208)
426 1bif_A 6-phosphofructo-2-kinas 65.6 5.3 0.00018 39.5 4.5 35 151-185 40-74 (469)
427 2i1q_A DNA repair and recombin 65.6 3.2 0.00011 38.5 2.8 39 150-188 98-152 (322)
428 2ocp_A DGK, deoxyguanosine kin 65.3 2.8 9.6E-05 37.1 2.2 22 152-173 4-25 (241)
429 1x6v_B Bifunctional 3'-phospho 65.3 5.2 0.00018 42.0 4.5 35 151-185 53-87 (630)
430 2v9p_A Replication protein E1; 65.1 3.7 0.00013 39.1 3.1 30 145-174 120-150 (305)
431 4ddu_A Reverse gyrase; topoiso 65.1 12 0.0004 41.5 7.5 29 9-37 102-130 (1104)
432 2jeo_A Uridine-cytidine kinase 65.0 2.5 8.7E-05 37.6 1.8 23 150-173 25-47 (245)
433 3ly5_A ATP-dependent RNA helic 64.8 5.1 0.00018 36.0 3.9 36 152-187 93-135 (262)
434 3dkp_A Probable ATP-dependent 64.1 3.8 0.00013 35.9 2.8 37 151-187 67-107 (245)
435 3u61_B DNA polymerase accessor 63.9 8.6 0.00029 35.2 5.3 35 71-105 104-143 (324)
436 3bh0_A DNAB-like replicative h 63.8 19 0.00065 33.5 7.8 31 9-39 77-107 (315)
437 3fht_A ATP-dependent RNA helic 63.7 3.9 0.00013 38.0 3.0 38 151-188 65-105 (412)
438 3fgn_A Dethiobiotin synthetase 63.6 6.6 0.00023 36.1 4.4 36 153-188 29-65 (251)
439 3d31_A Sulfate/molybdate ABC t 63.5 1.9 6.4E-05 41.8 0.7 24 149-173 25-48 (348)
440 3cr8_A Sulfate adenylyltranfer 63.4 3.5 0.00012 42.4 2.8 24 150-174 369-392 (552)
441 3zvl_A Bifunctional polynucleo 63.4 2.3 8E-05 41.5 1.4 20 150-169 258-277 (416)
442 3tui_C Methionine import ATP-b 63.4 2.8 9.4E-05 41.1 1.9 25 149-174 53-77 (366)
443 2r44_A Uncharacterized protein 63.4 12 0.00042 34.3 6.3 22 151-173 47-68 (331)
444 1sxj_A Activator 1 95 kDa subu 63.3 8.3 0.00028 38.5 5.5 37 71-107 147-188 (516)
445 1s2m_A Putative ATP-dependent 63.2 21 0.00071 33.1 7.9 31 7-37 65-98 (400)
446 3fdi_A Uncharacterized protein 63.1 2.5 8.4E-05 37.2 1.4 21 152-172 8-28 (201)
447 2qby_A CDC6 homolog 1, cell di 62.7 2.9 0.0001 38.4 1.9 43 71-113 127-178 (386)
448 2gks_A Bifunctional SAT/APS ki 62.6 6.4 0.00022 40.2 4.5 34 152-185 374-407 (546)
449 3u4q_B ATP-dependent helicase/ 62.6 5.7 0.00019 43.8 4.4 33 152-184 3-38 (1166)
450 2chg_A Replication factor C sm 62.4 7.1 0.00024 32.3 4.1 34 71-104 101-138 (226)
451 3ber_A Probable ATP-dependent 62.4 7.1 0.00024 34.8 4.3 37 151-187 81-120 (249)
452 1e69_A Chromosome segregation 62.2 3.6 0.00012 38.5 2.4 25 147-172 21-45 (322)
453 2o0j_A Terminase, DNA packagin 62.0 33 0.0011 33.6 9.3 81 8-91 186-295 (385)
454 3fht_A ATP-dependent RNA helic 61.7 9.2 0.00031 35.4 5.1 30 8-37 72-104 (412)
455 1uaa_A REP helicase, protein ( 61.5 6.1 0.00021 40.6 4.2 38 150-187 15-56 (673)
456 2g0t_A Conserved hypothetical 61.4 75 0.0026 30.8 11.7 203 8-232 34-253 (350)
457 1tf7_A KAIC; homohexamer, hexa 61.3 7.5 0.00026 39.0 4.7 37 149-185 38-75 (525)
458 3gd7_A Fusion complex of cysti 60.9 3.2 0.00011 40.8 1.9 24 149-173 46-69 (390)
459 1oxx_K GLCV, glucose, ABC tran 60.4 1.9 6.5E-05 41.8 0.1 29 145-174 25-54 (353)
460 1q0u_A Bstdead; DEAD protein, 60.4 3.2 0.00011 35.8 1.6 37 151-187 42-81 (219)
461 3aez_A Pantothenate kinase; tr 59.9 3.4 0.00012 39.1 1.8 25 149-174 89-113 (312)
462 1pui_A ENGB, probable GTP-bind 59.6 3.6 0.00012 34.7 1.8 18 150-167 26-43 (210)
463 1wrb_A DJVLGB; RNA helicase, D 59.5 26 0.00089 30.6 7.5 15 70-84 172-186 (253)
464 2oxc_A Probable ATP-dependent 59.3 4.4 0.00015 35.3 2.3 36 152-187 63-101 (230)
465 4a2p_A RIG-I, retinoic acid in 59.1 9 0.00031 37.2 4.7 31 7-37 29-64 (556)
466 1r6b_X CLPA protein; AAA+, N-t 59.0 9 0.00031 39.9 5.0 24 151-174 208-231 (758)
467 3auy_A DNA double-strand break 58.9 3.8 0.00013 39.2 2.0 27 146-173 21-47 (371)
468 1byi_A Dethiobiotin synthase; 58.4 7.3 0.00025 33.5 3.6 29 10-38 12-40 (224)
469 3bor_A Human initiation factor 58.2 15 0.00051 32.1 5.7 30 8-37 75-107 (237)
470 2xau_A PRE-mRNA-splicing facto 58.2 7.7 0.00026 41.2 4.4 38 150-187 109-149 (773)
471 1ojl_A Transcriptional regulat 58.2 8.7 0.0003 35.7 4.3 83 154-301 29-144 (304)
472 3gmt_A Adenylate kinase; ssgci 58.2 4.9 0.00017 36.9 2.5 21 154-174 12-32 (230)
473 1fnn_A CDC6P, cell division co 58.1 2.9 0.0001 38.7 1.0 39 71-109 124-170 (389)
474 1sq5_A Pantothenate kinase; P- 58.1 7 0.00024 36.3 3.6 23 150-173 80-102 (308)
475 2h92_A Cytidylate kinase; ross 57.9 4.9 0.00017 34.5 2.4 17 152-168 5-21 (219)
476 1oix_A RAS-related protein RAB 57.8 4.9 0.00017 33.9 2.3 19 152-170 31-49 (191)
477 3eiq_A Eukaryotic initiation f 57.8 10 0.00034 35.3 4.7 31 7-37 84-117 (414)
478 2hf9_A Probable hydrogenase ni 57.7 6.6 0.00022 33.6 3.1 35 152-187 40-74 (226)
479 2f9l_A RAB11B, member RAS onco 57.6 5 0.00017 33.8 2.3 18 153-170 8-25 (199)
480 3nh6_A ATP-binding cassette SU 57.3 2.8 9.6E-05 39.8 0.7 28 145-173 74-102 (306)
481 3dmq_A RNA polymerase-associat 57.2 26 0.0009 38.0 8.4 32 6-37 176-209 (968)
482 2npi_A Protein CLP1; CLP1-PCF1 57.2 3.9 0.00013 40.9 1.8 25 149-174 137-161 (460)
483 2o5v_A DNA replication and rep 56.9 4.4 0.00015 39.3 2.1 27 146-173 22-48 (359)
484 3tmk_A Thymidylate kinase; pho 56.8 6.2 0.00021 35.5 2.9 27 150-176 5-31 (216)
485 3t1o_A Gliding protein MGLA; G 56.7 5.4 0.00019 32.7 2.3 20 153-173 17-36 (198)
486 1tk9_A Phosphoheptose isomeras 56.5 15 0.0005 30.9 5.1 40 150-189 109-148 (188)
487 2qby_B CDC6 homolog 3, cell di 56.5 11 0.00037 34.9 4.6 35 151-185 46-88 (384)
488 3r20_A Cytidylate kinase; stru 56.4 6.4 0.00022 35.9 3.0 40 256-303 94-137 (233)
489 1ixz_A ATP-dependent metallopr 56.4 4.8 0.00016 35.6 2.1 21 153-174 52-72 (254)
490 2dhr_A FTSH; AAA+ protein, hex 56.3 11 0.00037 38.2 4.9 66 153-234 67-135 (499)
491 1kao_A RAP2A; GTP-binding prot 56.3 5.7 0.00019 31.4 2.3 18 153-170 6-23 (167)
492 1ko7_A HPR kinase/phosphatase; 56.0 11 0.00039 36.0 4.8 83 72-173 80-167 (314)
493 3u4q_A ATP-dependent helicase/ 55.9 6.3 0.00022 44.0 3.4 38 150-187 23-66 (1232)
494 1lv7_A FTSH; alpha/beta domain 55.9 6 0.00021 35.0 2.6 29 153-184 48-76 (257)
495 1z63_A Helicase of the SNF2/RA 55.9 57 0.0019 31.5 9.9 32 6-37 62-95 (500)
496 2ga8_A Hypothetical 39.9 kDa p 55.8 6.4 0.00022 38.6 3.0 19 153-171 27-45 (359)
497 3tbk_A RIG-I helicase domain; 55.8 9.3 0.00032 36.9 4.2 32 6-37 25-61 (555)
498 4i1u_A Dephospho-COA kinase; s 55.8 3.3 0.00011 37.4 0.9 25 154-182 13-37 (210)
499 3sop_A Neuronal-specific septi 55.7 4 0.00014 37.7 1.5 19 154-173 6-24 (270)
500 3syl_A Protein CBBX; photosynt 55.7 21 0.00073 32.0 6.4 34 73-106 131-177 (309)
No 1
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-50 Score=370.45 Aligned_cols=142 Identities=35% Similarity=0.570 Sum_probs=123.9
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhccc-CCCccEEEEccccChH-H
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH-TKDIDVIGIDEGQFFP-D 86 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~-~~~~dvV~IDEaQFF~-d 86 (353)
.-|||||+||++++||..+|++|++|||++|+||+.+.|+||+|++++|+.+.++.++... .+++|||+|||||||+ +
T Consensus 37 M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~IDEaQFf~~~ 116 (219)
T 3e2i_A 37 MFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDE 116 (219)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEECCGGGSCTH
T ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEEechhcCCHH
Confidence 3689999999999999999999999999999999999999999999999999998888754 4789999999999998 7
Q ss_pred HHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccccccccc
Q psy8456 87 VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQ 150 (353)
Q Consensus 87 Iv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~g 150 (353)
++++++.+++.|++|||||||+||+++||+++++||++||+|+||+|+|++||++|+||+|+++
T Consensus 117 ~v~~l~~la~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~ 180 (219)
T 3e2i_A 117 IVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN 180 (219)
T ss_dssp HHHHHHHHHHTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEeecccccccCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEEC
Confidence 9999998899999999999999999999999999999999999999999999999999999865
No 2
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=100.00 E-value=3.8e-49 Score=360.30 Aligned_cols=140 Identities=55% Similarity=0.959 Sum_probs=132.4
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccCCCccEEEEccccChHHHHH
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQFFPDVVS 89 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~~~~dvV~IDEaQFF~dIv~ 89 (353)
-|||||+||++++||..+|++|+++||++|+||+ +.|+||+|...+|+.+++..++.....++|||+|||||||+++++
T Consensus 30 gsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQFfk~~ve 108 (195)
T 1w4r_A 30 FSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVE 108 (195)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGGGCTTHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchhhhHHHHH
Confidence 4899999999999999999999999999999999 459999999999999998888875556799999999999987899
Q ss_pred HHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccccccccc
Q psy8456 90 FAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQ 150 (353)
Q Consensus 90 l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~g 150 (353)
+++.+++.|++|||||||+||+++||+++++||++||+|+||+|+|+.||++|++|+|+++
T Consensus 109 ~~~~L~~~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~ 169 (195)
T 1w4r_A 109 FCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT 169 (195)
T ss_dssp HHHHHHHTTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred HHHHHHHCCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 3
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=100.00 E-value=3.6e-47 Score=352.60 Aligned_cols=157 Identities=38% Similarity=0.612 Sum_probs=136.6
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhccc-CCCccEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPH-TKDIDVIG 227 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~-~~~~~~i~ 227 (353)
.|++++|+|||||||||+|+++++||+.+|++|++++|++|+||+...|+||+|.+.+|+++.++.++... ..++|||+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~ 106 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIG 106 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999888887654 47899999
Q ss_pred EecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEecccccc
Q psy8456 228 IDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQ 307 (353)
Q Consensus 228 IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~df~ 307 (353)
|||||||+ +++|+++.+|++.|++|||||||+||+
T Consensus 107 IDEaQFf~---------------------------------------------~~~v~~l~~la~~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 107 IDEVQFFD---------------------------------------------DEIVSIVEKLSADGHRVIVAGLDMDFR 141 (219)
T ss_dssp ECCGGGSC---------------------------------------------THHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred EechhcCC---------------------------------------------HHHHHHHHHHHHCCCEEEEeecccccc
Confidence 99999941 468888999999999999999999999
Q ss_pred CCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCeeE
Q psy8456 308 RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEV 350 (353)
Q Consensus 308 ~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~~ 350 (353)
++||+++++||++||+|+||+|+||.||++|+||+|+++|+++
T Consensus 142 ~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~g~~~ 184 (219)
T 3e2i_A 142 GEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPA 184 (219)
T ss_dssp SCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEETTEEC
T ss_pred cCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEECCccc
Confidence 9999999999999999999999999999999999999998765
No 4
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=100.00 E-value=3.9e-47 Score=347.04 Aligned_cols=158 Identities=59% Similarity=1.018 Sum_probs=145.7
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccE
Q psy8456 146 KRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDV 225 (353)
Q Consensus 146 ~Ri~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~ 225 (353)
.+..+++++|+|||||||||+|+++++||..+|++|+++||++|+||+ +.|+||+|...+|+.+.+..++.....++||
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~~~~~Dv 94 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAV 94 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHHHHTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHhccCCCE
Confidence 344588999999999999999999999999999999999999999999 5599999999999998888887766667999
Q ss_pred EEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEecccc
Q psy8456 226 IGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGT 305 (353)
Q Consensus 226 i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~d 305 (353)
|+|||+|| |++++++++.|++.|++|||+|||+|
T Consensus 95 IlIDEaQF----------------------------------------------fk~~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 95 IGIDEGQF----------------------------------------------FPDIVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp EEESSGGG----------------------------------------------CTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred EEEEchhh----------------------------------------------hHHHHHHHHHHHHCCCeEEEEecccc
Confidence 99999999 67799999999999999999999999
Q ss_pred ccCCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCeeE
Q psy8456 306 FQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEV 350 (353)
Q Consensus 306 f~~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~~ 350 (353)
|+++||+++++|||+||+|+||+|+||.||++|+||+|+++++++
T Consensus 129 F~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~~~~~ 173 (195)
T 1w4r_A 129 FQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEV 173 (195)
T ss_dssp TTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCCCSS
T ss_pred cccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcCCCCE
Confidence 999999999999999999999999999999999999999876553
No 5
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=100.00 E-value=2.2e-46 Score=346.37 Aligned_cols=142 Identities=35% Similarity=0.560 Sum_probs=116.3
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccC-CCccEEEEccccChH-HH
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHT-KDIDVIGIDEGQFFP-DV 87 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~-~~~dvV~IDEaQFF~-dI 87 (353)
-|||||+||++++||..+|++|++|||.+|+||+.+.|+||+|++++|+.+++..++.... +++|+|+|||||||+ ++
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEaQF~~~~~ 117 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEVQFFDGDI 117 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCGGGSCTTH
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECcccCCHHH
Confidence 5899999999999999999999999999999999999999999999999988887776544 369999999999996 67
Q ss_pred HHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceecccccccccccccccc
Q psy8456 88 VSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQE 151 (353)
Q Consensus 88 v~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~ge 151 (353)
+++++.+++.|++|||+|||+||+++||+++++||++||+|+||+++|+.||++|++|+|++++
T Consensus 118 V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~~~g 181 (214)
T 2j9r_A 118 VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDG 181 (214)
T ss_dssp HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEEETT
T ss_pred HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEEeCC
Confidence 7999998989999999999999999999999999999999999999999999999999998654
No 6
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=100.00 E-value=9.1e-46 Score=346.27 Aligned_cols=140 Identities=55% Similarity=0.959 Sum_probs=122.8
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccCCCccEEEEccccChHHHHH
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQFFPDVVS 89 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~~~~dvV~IDEaQFF~dIv~ 89 (353)
-|||||+||++++||..+|++|++|||.+|+||+ +.|+||+|.+++|+.+.+..++.....++|+|+|||||||+++++
T Consensus 29 gsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQF~~~v~e 107 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDIVE 107 (234)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSGGGCTTHHH
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchhhhhhHHH
Confidence 5999999999999999999999999999999999 899999999999998888877765557899999999999988999
Q ss_pred HHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccccccccc
Q psy8456 90 FAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQ 150 (353)
Q Consensus 90 l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~g 150 (353)
+++.+++.|++|||+||++||+++||+++++||++||+|+||+++|+.||++|++|+|+++
T Consensus 108 l~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~ 168 (234)
T 2orv_A 108 FCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT 168 (234)
T ss_dssp HHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred HHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 7
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=100.00 E-value=2.9e-44 Score=325.02 Aligned_cols=142 Identities=32% Similarity=0.492 Sum_probs=124.9
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccC-CCccEEEEccccChH-HH
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHT-KDIDVIGIDEGQFFP-DV 87 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~-~~~dvV~IDEaQFF~-dI 87 (353)
-|||||+||++++||..+|++|+++||.+|+||+.+.|+||+|+..+|..+.+..++.... +++|+|+|||||||+ ++
T Consensus 18 gsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViIDEaqfl~~~~ 97 (191)
T 1xx6_A 18 YSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAIDEVQFFDDEI 97 (191)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEECSGGGSCTHH
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEECCCCCCHHH
Confidence 5899999999999999999999999999999999889999999999998888877776433 459999999999995 77
Q ss_pred HHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceecccccccccccccccc
Q psy8456 88 VSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQE 151 (353)
Q Consensus 88 v~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~ge 151 (353)
+++++.+++.|++||++||++||+++||+++++|+++||.|+|++++|+.||++|+||+|++++
T Consensus 98 v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~g 161 (191)
T 1xx6_A 98 VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLING 161 (191)
T ss_dssp HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEETT
T ss_pred HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcCC
Confidence 8889998888999999999999999999999999999999999999999999999999998653
No 8
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=100.00 E-value=1.3e-43 Score=327.84 Aligned_cols=157 Identities=39% Similarity=0.595 Sum_probs=129.0
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCC-CccEE
Q psy8456 148 IGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTK-DIDVI 226 (353)
Q Consensus 148 i~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~~i 226 (353)
..+++++++|||||||||+|+++++||..+|++|++++|.+|+||+...++||+|...++..+.+..++..... ++|+|
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvV 105 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVI 105 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887777765543 69999
Q ss_pred EEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEeccccc
Q psy8456 227 GIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTF 306 (353)
Q Consensus 227 ~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~df 306 (353)
+|||+|||+ +++|++++.|++.|++|||+|||+||
T Consensus 106 iIDEaQF~~---------------------------------------------~~~V~~l~~l~~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 106 AIDEVQFFD---------------------------------------------GDIVEVVQVLANRGYRVIVAGLDQDF 140 (214)
T ss_dssp EECCGGGSC---------------------------------------------TTHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred EEECcccCC---------------------------------------------HHHHHHHHHHhhCCCEEEEEeccccc
Confidence 999999941 56778888888889999999999999
Q ss_pred cCCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCee
Q psy8456 307 QRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKE 349 (353)
Q Consensus 307 ~~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~ 349 (353)
+++||+++.+||++||.|+||+++|+.||++|+||+|+++|++
T Consensus 141 ~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~~~g~~ 183 (214)
T 2j9r_A 141 RGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEP 183 (214)
T ss_dssp TSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEEETTEE
T ss_pred ccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEEeCCCc
Confidence 9999999999999999999999999999999999999999887
No 9
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=100.00 E-value=1.6e-43 Score=331.17 Aligned_cols=157 Identities=60% Similarity=1.025 Sum_probs=133.5
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEE
Q psy8456 147 RIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVI 226 (353)
Q Consensus 147 Ri~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i 226 (353)
+..+.+++++|||||||||+||++++||..+|++|++++|.+|+||+ ..++||+|.+.+|+.+....++.....++|+|
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvV 94 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVI 94 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEE
Confidence 34588999999999999999999999999999999999999999999 99999999999998887766666555789999
Q ss_pred EEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEeccccc
Q psy8456 227 GIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTF 306 (353)
Q Consensus 227 ~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~df 306 (353)
+|||+|| |++++++++.+++.|++|||+||++||
T Consensus 95 iIDEaQF----------------------------------------------~~~v~el~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 95 GIDEGQF----------------------------------------------FPDIVEFCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp EESSGGG----------------------------------------------CTTHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred EEEchhh----------------------------------------------hhhHHHHHHHHHhCCCEEEEEeccccc
Confidence 9999999 455788888888999999999999999
Q ss_pred cCCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCeeE
Q psy8456 307 QRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEV 350 (353)
Q Consensus 307 ~~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~~ 350 (353)
+++||+++.+||++||.|+||+++|+.||++|+||+|+++++++
T Consensus 129 ~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~~~~~ 172 (234)
T 2orv_A 129 QRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEV 172 (234)
T ss_dssp TSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCCCSS
T ss_pred ccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcCCCCE
Confidence 99999999999999999999999999999999999999877653
No 10
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=100.00 E-value=1.3e-41 Score=307.64 Aligned_cols=156 Identities=37% Similarity=0.568 Sum_probs=136.5
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccC-CCccEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHT-KDIDVIG 227 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~-~~~~~i~ 227 (353)
.+++++++|||||||||+|+++++||..+|++|++++|.+|+||+...++||.|...++..+.+..+++... .++|+|+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvVi 86 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIA 86 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEE
Confidence 478999999999999999999999999999999999999999999999999999988888877666665443 3599999
Q ss_pred EecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEecccccc
Q psy8456 228 IDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQ 307 (353)
Q Consensus 228 IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~df~ 307 (353)
|||+||++ ++++++++.|++.|++|+++||++||+
T Consensus 87 IDEaqfl~---------------------------------------------~~~v~~l~~l~~~~~~Vi~~Gl~~df~ 121 (191)
T 1xx6_A 87 IDEVQFFD---------------------------------------------DEIVEIVNKIAESGRRVICAGLDMDFR 121 (191)
T ss_dssp ECSGGGSC---------------------------------------------THHHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred EECCCCCC---------------------------------------------HHHHHHHHHHHhCCCEEEEEecccccc
Confidence 99999941 677888888888899999999999999
Q ss_pred CCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCee
Q psy8456 308 RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKE 349 (353)
Q Consensus 308 ~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~ 349 (353)
++||+++.+|+++||.|+|++++|+.||++|+||+|+++|++
T Consensus 122 ~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~g~~ 163 (191)
T 1xx6_A 122 GKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKP 163 (191)
T ss_dssp SCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEETTEE
T ss_pred cCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcCCCc
Confidence 999999999999999999999999999999999999999887
No 11
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=100.00 E-value=3.1e-38 Score=292.41 Aligned_cols=140 Identities=26% Similarity=0.467 Sum_probs=128.5
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhccc------CCCccEEEEccccC
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPH------TKDIDVIGIDEGQF 83 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~------~~~~dvV~IDEaQF 83 (353)
-+||||+|++.++|+..+|++|++++|.+|+| +...|.||.|...++..+.+..++... ..++|+|+|||+||
T Consensus 22 GsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 22 FAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF 100 (223)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 58999999999999999999999999999999 888899999999888877776666421 24699999999999
Q ss_pred hH-HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccccccccc
Q psy8456 84 FP-DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQ 150 (353)
Q Consensus 84 F~-dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~g 150 (353)
|+ ++++++..+++.|++|+++||++||+++||++++.|+++||.|++|+++|+.||++|++|+|+.+
T Consensus 101 l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~~ 168 (223)
T 2b8t_A 101 FDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKID 168 (223)
T ss_dssp SCTHHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEET
T ss_pred CcHHHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEecC
Confidence 96 88888899999999999999999999999999999999999999999999999999999999854
No 12
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=100.00 E-value=1.6e-37 Score=277.17 Aligned_cols=143 Identities=22% Similarity=0.302 Sum_probs=122.6
Q ss_pred CCCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccC-CCccEEEEccccChH-
Q psy8456 8 DRINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHT-KDIDVIGIDEGQFFP- 85 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~-~~~dvV~IDEaQFF~- 85 (353)
.+-+||||.|++.++++..+|++|++++|.+|+||+.+.|.||+|...++..+.++.++.... +++|+|+|||+|||+
T Consensus 11 ~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~Q~~~~ 90 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNP 90 (184)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCGGGSCT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECcccCCH
Confidence 356899999999999999999999999999999999999999999999988888887776443 479999999999994
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceecccc-ccccccccccc
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCF-RDAAFTKRIGQ 150 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG-~~A~f~~Ri~g 150 (353)
++++++..+++.|++|+++||++||+++||++++.|+++||.|++|+++|+.|| ++|++|+|+++
T Consensus 91 ~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~ 156 (184)
T 2orw_A 91 SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG 156 (184)
T ss_dssp THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSS
T ss_pred HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcC
Confidence 778888878888999999999999999999999999999999999999999999 99999999864
No 13
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=100.00 E-value=5.4e-36 Score=267.26 Aligned_cols=156 Identities=28% Similarity=0.406 Sum_probs=133.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccC-CCccEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHT-KDIDVIGI 228 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~-~~~~~i~I 228 (353)
+.+.+++|||||||||.|++.++++..+|++|++++|..|+||+.+.+.||+|....+....++.+++... +++|+|+|
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviI 82 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFI 82 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEE
Confidence 67899999999999999999999999999999999999999999999999999988888877777776554 47999999
Q ss_pred ecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEeccccccC
Q psy8456 229 DEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQR 308 (353)
Q Consensus 229 DE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~gLd~df~~ 308 (353)
||+||+ -+++++++..+++.|++|+++||++||++
T Consensus 83 DE~Q~~---------------------------------------------~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~~ 117 (184)
T 2orw_A 83 DEVQFF---------------------------------------------NPSLFEVVKDLLDRGIDVFCAGLDLTHKQ 117 (184)
T ss_dssp CCGGGS---------------------------------------------CTTHHHHHHHHHHTTCEEEEEEESBCTTS
T ss_pred ECcccC---------------------------------------------CHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence 999994 16777788888888999999999999999
Q ss_pred CCchhHHhhhhcccceEEeeeeccccc-cccceeEEeeCCeeE
Q psy8456 309 TGFNDILSLIPLAECVEKLTAVCMSCF-RDAAFTKRIGQEKEV 350 (353)
Q Consensus 309 ~~F~~~~~L~~~ad~v~kl~a~C~~Cg-~~A~~~~R~~~~~~~ 350 (353)
++|+.+..|+++||.|+||+++|+.|| ++|++|+|+++++++
T Consensus 118 ~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~~~~~ 160 (184)
T 2orw_A 118 NPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEE 160 (184)
T ss_dssp CBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSSCSCS
T ss_pred CCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcCCCCE
Confidence 999999999999999999999999999 999999999877654
No 14
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=100.00 E-value=6.8e-36 Score=276.68 Aligned_cols=158 Identities=31% Similarity=0.499 Sum_probs=139.8
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhccc------
Q psy8456 146 KRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPH------ 219 (353)
Q Consensus 146 ~Ri~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~------ 219 (353)
....+.+.+++|||||||||+|++.++++..+|++|++++|.+|+| +...+.+|.|...++..+....++...
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 3345789999999999999999999999999999999999999999 888999999988888776554444321
Q ss_pred CCCccEEEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEE
Q psy8456 220 TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVV 299 (353)
Q Consensus 220 ~~~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~ 299 (353)
..++|+|+|||+||+ -+++++++..|++.|++|++
T Consensus 87 ~~~~dvViIDEaQ~l---------------------------------------------~~~~ve~l~~L~~~gi~Vil 121 (223)
T 2b8t_A 87 NDETKVIGIDEVQFF---------------------------------------------DDRICEVANILAENGFVVII 121 (223)
T ss_dssp CTTCCEEEECSGGGS---------------------------------------------CTHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEEecCccC---------------------------------------------cHHHHHHHHHHHhCCCeEEE
Confidence 246999999999995 25677788888889999999
Q ss_pred EeccccccCCCchhHHhhhhcccceEEeeeeccccccccceeEEeeCCee
Q psy8456 300 AALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKE 349 (353)
Q Consensus 300 ~gLd~df~~~~F~~~~~L~~~ad~v~kl~a~C~~Cg~~A~~~~R~~~~~~ 349 (353)
+||++||+++||+.+..|+++||.|++|+++|+.||++|++|+|+.+|++
T Consensus 122 ~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~~g~~ 171 (223)
T 2b8t_A 122 SGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKH 171 (223)
T ss_dssp ECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEETTEE
T ss_pred EeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEecCCCc
Confidence 99999999999999999999999999999999999999999999999876
No 15
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.12 E-value=0.0017 Score=55.28 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=40.4
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGI 228 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i~I 228 (353)
.++..+++||.||||||-+--....+...|++++.+... +-.. . .+ ..++++++|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~-~~~~-------~--------------~~---~~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA-SMPL-------T--------------DA---AFEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT-TSCC-------C--------------GG---GGGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH-HhhH-------H--------------HH---HhCCCEEEE
Confidence 356778999999999987666666666567666655321 1110 0 11 235799999
Q ss_pred eccccc
Q psy8456 229 DEGQFV 234 (353)
Q Consensus 229 DE~QF~ 234 (353)
||.+.+
T Consensus 90 DE~~~~ 95 (149)
T 2kjq_A 90 DQVEKL 95 (149)
T ss_dssp ESTTCC
T ss_pred eCcccc
Confidence 999985
No 16
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.87 E-value=0.0014 Score=58.89 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+.+++|++|||||+.....+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999876655444
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0053 Score=53.25 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=42.1
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGID 229 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i~ID 229 (353)
+..-+++||.|+|||+-+-..++.....+.++..+....-. ..+.+.+....+.++++||
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~vliiD 111 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA--------------------SISTALLEGLEQFDLICID 111 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG--------------------GSCGGGGTTGGGSSEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--------------------HHHHHHHHhccCCCEEEEe
Confidence 34568999999999987766666666667777665432100 0011122223557899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|+|.+
T Consensus 112 e~~~~ 116 (242)
T 3bos_A 112 DVDAV 116 (242)
T ss_dssp TGGGG
T ss_pred ccccc
Confidence 99986
No 18
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.71 E-value=0.0018 Score=66.96 Aligned_cols=38 Identities=13% Similarity=-0.005 Sum_probs=33.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+...+|.||.|+||||-+...++.+...|++|++..|+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 56789999999999999988888888999999998874
No 19
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.57 E-value=0.0016 Score=59.11 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=76.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecC-CCCCCCceeeccCcccce-----------------eecc
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKD-DRYDTEKVSTHDQQKLTA-----------------VSAV 211 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D-~R~~~~~i~s~~g~~~~a-----------------~~~~ 211 (353)
+.+.++.| -|.||||..+-.+.|+--+|++|+++.-... ..+++..+..+-+..+.. ....
T Consensus 29 g~i~v~tG-~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 44555555 5699999999999999999999999954443 223322232222210000 0001
Q ss_pred cHhhhccc--CCCccEEEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHH
Q psy8456 212 ELNKLIPH--TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAES 289 (353)
Q Consensus 212 ~~~~~~~~--~~~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~ 289 (353)
.++..... ..+||+|++||.=...- =+| ++ .++++++..+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~----~g~-------------l~---------------------~~ev~~~l~~ 149 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVA----YDY-------------LP---------------------LEEVISALNA 149 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHH----TTS-------------SC---------------------HHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcccc----CCC-------------CC---------------------HHHHHHHHHh
Confidence 12222222 37899999999843100 000 00 1334443321
Q ss_pred HHhCCCEEEEEeccccccCCCchhHHhhhhcccceEEeeeecc
Q psy8456 290 MANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCM 332 (353)
Q Consensus 290 ~~~~g~~Vi~~gLd~df~~~~F~~~~~L~~~ad~v~kl~a~C~ 332 (353)
.-.+..||+-|= .+ ...|+++||-|++++.+=+
T Consensus 150 -Rp~~~~vIlTGr------~a---p~~l~e~AD~VTem~~vkH 182 (196)
T 1g5t_A 150 -RPGHQTVIITGR------GC---HRDILDLADTVSELRPVKH 182 (196)
T ss_dssp -SCTTCEEEEECS------SC---CHHHHHHCSEEEECCCSCC
T ss_pred -CcCCCEEEEECC------CC---cHHHHHhCcceeeecceeC
Confidence 124788998874 33 3579999999999976643
No 20
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.47 E-value=0.011 Score=54.06 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=28.6
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCC-EEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANY-RCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~-~~~~~k~~ 187 (353)
-++.+|||||||...+..+..+...+. +++++-|.
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt 166 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT 166 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSS
T ss_pred eEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 478999999999998877777655554 99999885
No 21
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.42 E-value=0.0022 Score=58.27 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHHHHHcCceEEEEeeccC-CCCCCCceeeccCCceeeee----cCC-------------hhhhccc--C
Q psy8456 11 NPYIVHFCRRIRRYQYANYRCMIVRYAKD-DRYDTEKVATHDQQKLTAVS----AVE-------------LNKLIPH--T 70 (353)
Q Consensus 11 ~GKSteLLrr~~ry~~agkkvlv~Kp~iD-tRy~~~~I~Sr~G~~~~Ai~----i~~-------------l~ei~~~--~ 70 (353)
.||||..+-.+.|.--+|++|+++.--.. ..+++..+..+.+..+.... .+. +...... .
T Consensus 39 kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~~~l~~ 118 (196)
T 1g5t_A 39 KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLAD 118 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999943322 22333333344332222110 000 1111112 3
Q ss_pred CCccEEEEcccc------ChHHHHHHHHHHHh--CCCEEEEEecccccccCCchhHhhhhccccceEecccee
Q psy8456 71 KDIDVIGIDEGQ------FFPDVVSFAESMAN--AGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 135 (353)
Q Consensus 71 ~~~dvV~IDEaQ------FF~dIv~l~~~l~~--~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC 135 (353)
++||+|++||.= ++ ++.++.+.+.+ .+..||+-|= .+ .+.|+++||-|++++.+=
T Consensus 119 ~~yDlvILDEi~~al~~g~l-~~~ev~~~l~~Rp~~~~vIlTGr------~a---p~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYL-PLEEVISALNARPGHQTVIITGR------GC---HRDILDLADTVSELRPVK 181 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSS-CHHHHHHHHHTSCTTCEEEEECS------SC---CHHHHHHCSEEEECCCSC
T ss_pred CCCCEEEEeCCCccccCCCC-CHHHHHHHHHhCcCCCEEEEECC------CC---cHHHHHhCcceeeeccee
Confidence 679999999993 33 34455555664 4889999986 33 357999999999997654
No 22
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.35 E-value=0.0029 Score=59.08 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=40.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEEEEec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGIDE 230 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i~IDE 230 (353)
..-+++||.|+||||-+-..++.....+.+++.+.... .... -..+........+.....+.++++|||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~vL~iDE 106 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD--------FAQA---MVEHLKKGTINEFRNMYKSVDLLLLDD 106 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH--------HHHH---HHHHHHHTCHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH--------HHHH---HHHHHHcCcHHHHHHHhcCCCEEEEcC
Confidence 45689999999999765555555555567666554321 0000 000000011122222223578999999
Q ss_pred cccc
Q psy8456 231 GQFV 234 (353)
Q Consensus 231 ~QF~ 234 (353)
+|++
T Consensus 107 i~~l 110 (324)
T 1l8q_A 107 VQFL 110 (324)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9996
No 23
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.29 E-value=0.0035 Score=62.16 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=31.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCC-EEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANY-RCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~-~~~~~k~~ 187 (353)
..++.|+-|||||+-|...+..+...|. +++++.|+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 6789999999999988888888888887 78888775
No 24
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.27 E-value=0.0064 Score=51.77 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=25.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHH-HhCCEEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQ-YANYRCMIV 184 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~-~~~~~~~~~ 184 (353)
+...+++||.||||||-+-..+..+. ..|..++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 56678999999999987666666664 567665543
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.23 E-value=0.003 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.059 Sum_probs=31.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+++.+++||.+|||||-+..-+......+.+|+++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 5788999999999999988888787777888887764
No 26
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.14 E-value=0.016 Score=56.04 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=52.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceee---cccHhh---hcc---cC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVS---AVELNK---LIP---HT 220 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~---~~~~~~---~~~---~~ 220 (353)
+++..|+||.+|||||-+++.+.+....|.+|+++......+ .....+.|....-+. ..+..+ ++. ..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~---~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD---PEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC---HHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 568899999999999999999999998999999887643111 011112222111111 112222 221 23
Q ss_pred CCccEEEEeccccc
Q psy8456 221 KDIDVIGIDEGQFV 234 (353)
Q Consensus 221 ~~~~~i~IDE~QF~ 234 (353)
.++++|+|||.+.+
T Consensus 138 ~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 138 GALDIIVIDSVAAL 151 (349)
T ss_dssp TCCSEEEEECGGGC
T ss_pred CCCCEEEEcChHhh
Confidence 56999999999975
No 27
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.10 E-value=0.012 Score=53.27 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.4
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
-++.||||+|||...+..+... +.+++++-|.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~ 142 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPT 142 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 6889999999998887766553 7888888886
No 28
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.95 E-value=0.0068 Score=59.84 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=56.9
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCC-EEEEEeeecC---------CCC---CCCceee-ccCccc-------ceeec
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANY-RCMIVRYAKD---------DRY---DTEKVST-HDQQKL-------TAVSA 210 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~-~~~~~k~~~D---------~R~---~~~~i~s-~~g~~~-------~a~~~ 210 (353)
.-++.||||||||...+..+..+...++ +++++-|... .++ ....+.. +.|... .-+.+
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i 209 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVV 209 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEEE
Confidence 4589999999999999888887766666 9999999631 112 1112211 111111 12333
Q ss_pred ccHhhhccc----CCCccEEEEecccccceecCCccchhhhhhh
Q psy8456 211 VELNKLIPH----TKDIDVIGIDEGQFVEVIGGSDKYMAVCREC 250 (353)
Q Consensus 211 ~~~~~~~~~----~~~~~~i~IDE~QF~~~~~~~~~~~~~~~~~ 250 (353)
.....+... .+++++|+|||+|.+. .+.|..+.+..
T Consensus 210 ~T~~~l~~~~~~~~~~~~liIiDE~H~~~----~~~~~~il~~~ 249 (510)
T 2oca_A 210 GTWQTVVKQPKEWFSQFGMMMNDECHLAT----GKSISSIISGL 249 (510)
T ss_dssp EEHHHHTTSCGGGGGGEEEEEEETGGGCC----HHHHHHHGGGC
T ss_pred EeHHHHhhchhhhhhcCCEEEEECCcCCC----cccHHHHHHhc
Confidence 333334332 4678999999999852 24455554444
No 29
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.93 E-value=0.045 Score=53.49 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=51.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccce---eecccHhhhc---c---cC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA---VSAVELNKLI---P---HT 220 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a---~~~~~~~~~~---~---~~ 220 (353)
+.+..|+||.+|||||-+++.+..++..|.+|+++......+. ....+.|..... ....+..+++ . ..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~---~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP---VYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch---HHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4678899999999999999999999989999988754321110 011122221111 1112222221 1 13
Q ss_pred CCccEEEEeccccc
Q psy8456 221 KDIDVIGIDEGQFV 234 (353)
Q Consensus 221 ~~~~~i~IDE~QF~ 234 (353)
..+++|+||.++-+
T Consensus 138 ~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 138 GVVDLIVVDSVAAL 151 (356)
T ss_dssp SCCSEEEEECTTTC
T ss_pred cCCCeEEehHhhhh
Confidence 57899999999964
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.89 E-value=0.0079 Score=59.70 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=38.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH-HHh--CCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCC-CccEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY-QYA--NYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTK-DIDVI 226 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~-~~~--~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~~i 226 (353)
+.-+++||.|+|||| |++.+.++ ... +.+++.+.... ... .-..++.......+..... +.+++
T Consensus 131 ~~lll~Gp~G~GKTt-La~aia~~l~~~~~~~~v~~v~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTH-LLQSIGNYVVQNEPDLRVMYITSEK--------FLN---DLVDSMKEGKLNEFREKYRKKVDIL 198 (440)
T ss_dssp CCEEEECSSSSSHHH-HHHHHHHHHHHHCCSSCEEEEEHHH--------HHH---HHHHHHHTTCHHHHHHHHTTTCSEE
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHHhCCCCeEEEeeHHH--------HHH---HHHHHHHcccHHHHHHHhcCCCCEE
Confidence 456899999999997 55555554 333 55555444321 000 0000000011122222234 78999
Q ss_pred EEeccccc
Q psy8456 227 GIDEGQFV 234 (353)
Q Consensus 227 ~IDE~QF~ 234 (353)
+|||+|++
T Consensus 199 ~IDEi~~l 206 (440)
T 2z4s_A 199 LIDDVQFL 206 (440)
T ss_dssp EEECGGGG
T ss_pred EEeCcccc
Confidence 99999996
No 31
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.72 E-value=0.012 Score=57.55 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=52.5
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCC---------CCCCCceee-ccCccc-ceeecccHhhhccc-
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDD---------RYDTEKVST-HDQQKL-TAVSAVELNKLIPH- 219 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~---------R~~~~~i~s-~~g~~~-~a~~~~~~~~~~~~- 219 (353)
.-++.+|||||||...+..+... +.+++++-|...- +++...+.. +.+... ..+.+.....+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~ 186 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCCcCCEEEEEcHHHHHHH
Confidence 36889999999999888777654 8899999997321 122221222 222211 12223322222211
Q ss_pred ---CCCccEEEEecccccceecCCccchhhhh
Q psy8456 220 ---TKDIDVIGIDEGQFVEVIGGSDKYMAVCR 248 (353)
Q Consensus 220 ---~~~~~~i~IDE~QF~~~~~~~~~~~~~~~ 248 (353)
.+++++|+|||+|.+ ....|..+.+
T Consensus 187 ~~~~~~~~liIvDEaH~~----~~~~~~~~~~ 214 (472)
T 2fwr_A 187 EKLGNRFMLLIFDEVHHL----PAESYVQIAQ 214 (472)
T ss_dssp HHHTTTCSEEEEETGGGT----TSTTTHHHHH
T ss_pred HHhcCCCCEEEEECCcCC----CChHHHHHHH
Confidence 256999999999985 2345554433
No 32
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.67 E-value=0.0023 Score=64.77 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDR 191 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R 191 (353)
..+.+|.|+-|||||+.+.+.+.. ++++++.|..-.+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa 197 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAA 197 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHH
Confidence 457899999999999999887642 5678888865333
No 33
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.53 E-value=0.077 Score=51.60 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=43.5
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEeeecCCCCCC-CceeeccCcccceeecccHhhhccc--CCCcc
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVRYAKDDRYDT-EKVSTHDQQKLTAVSAVELNKLIPH--TKDID 224 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k~~~D~R~~~-~~i~s~~g~~~~a~~~~~~~~~~~~--~~~~~ 224 (353)
.+++.+++||.||||||-|---+..+... +.+++.+.....-.... ....+....... .....+.+.. ..++|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~---~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRD---TLGFSEALRSALREDPD 198 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTT---BSCHHHHHHHHTTSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccc---cCCHHHHHHHHhhhCcC
Confidence 45688999999999999876655555544 66666554322211110 011111100000 0122222221 47899
Q ss_pred EEEEeccc
Q psy8456 225 VIGIDEGQ 232 (353)
Q Consensus 225 ~i~IDE~Q 232 (353)
+|++||.-
T Consensus 199 villDEp~ 206 (356)
T 3jvv_A 199 IILVGEMR 206 (356)
T ss_dssp EEEESCCC
T ss_pred EEecCCCC
Confidence 99999974
No 34
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.33 E-value=0.03 Score=55.31 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=31.1
Q ss_pred ceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+..++.+|.|||||+. ++..+......|.+++++.|.
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Pt 57 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPT 57 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCC
Confidence 4558899999999995 888777777788899999885
No 35
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.20 E-value=0.014 Score=50.25 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=24.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
..-+++||.|+|||+-+-..++.....+.+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45689999999999855444444455567766554
No 36
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.14 E-value=0.07 Score=47.56 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH-HHhCC----EEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY-QYANY----RCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~-~~~~~----~~~~~k~~ 187 (353)
++..++.||.||||||.+...+... ...+. ++++..|.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~ 118 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccc
Confidence 5667899999999999776665554 33333 77777764
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.02 E-value=0.047 Score=55.17 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=29.5
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHh---------CCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYA---------NYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~---------~~~~~~~k~~ 187 (353)
.-++.+|||||||...+..+.++..+ +.+++++-|.
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~ 244 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADR 244 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-
T ss_pred ceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCC
Confidence 35788999999999988888887654 5899999884
No 38
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.83 E-value=0.2 Score=48.98 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=51.1
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHh--CCEEEEEeeecCCCCCCCceeeccCccccee---ecccHhhh----c-----
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYA--NYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV---SAVELNKL----I----- 217 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~--~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~---~~~~~~~~----~----- 217 (353)
+..|.||.+|||||-+++.+.+++.. |.+|+.+.....-+- .-..+.|...+.+ ...+..++ +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999876 788988765432210 0112223222211 11222222 1
Q ss_pred ccCCCccEEEEeccccc
Q psy8456 218 PHTKDIDVIGIDEGQFV 234 (353)
Q Consensus 218 ~~~~~~~~i~IDE~QF~ 234 (353)
-...++++|+||=+|-+
T Consensus 107 i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNL 123 (333)
T ss_dssp CCTTCCEEEEEECSTTC
T ss_pred hhccCceEEEEeccccc
Confidence 12357999999999975
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.83 E-value=0.041 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.192 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQY 176 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~ 176 (353)
.-+++||.|+|||+-+-..++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3589999999999866555555443
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.80 E-value=0.018 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=17.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQ 175 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~ 175 (353)
.-+++||.|+|||+-+-..++...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 348999999999976555544443
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.63 E-value=0.043 Score=54.19 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=30.7
Q ss_pred cceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++..++.||.|||||.. ++-.+......|.+++++-|..
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr 47 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTR 47 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchH
Confidence 55678999999999997 4556666666788999998853
No 42
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.61 E-value=0.028 Score=55.71 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=32.4
Q ss_pred cceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++..++.+|.|||||+. ++-.+..+...|.+++++-|..
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr 60 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTR 60 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchH
Confidence 45668899999999997 7777777777889999999854
No 43
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.56 E-value=0.044 Score=50.35 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHH--hCCEEEEEeeec
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQY--ANYRCMIVRYAK 188 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~--~~~~~~~~k~~~ 188 (353)
.-++.+|+|||||...+..+..+.. .+.+++++-|..
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 4578899999999887766655432 477899998863
No 44
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.55 E-value=0.03 Score=52.70 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=29.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHH-HhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQ-YANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~-~~~~~~~~~k~~ 187 (353)
.-++.+|||+|||...+..+..+. ..+.+++++-|.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 457899999999999888876653 468899999996
No 45
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.53 E-value=0.085 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=30.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
...+.|+.+|||||-+.+-+..+...|++|.+++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 45689999999999888888888888999999984
No 46
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.49 E-value=0.075 Score=51.95 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=52.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCccccee---ecccHhh---hcc---cC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV---SAVELNK---LIP---HT 220 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~---~~~~~~~---~~~---~~ 220 (353)
+.+.+|.|+.+||||+-.++.+.+....|.+|+++....... .....+.|....-+ ......+ ++. ..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~---~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD---PVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh---HHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 567889999999999999999999988899999887653211 00111222211111 1112222 221 13
Q ss_pred CCccEEEEeccccc
Q psy8456 221 KDIDVIGIDEGQFV 234 (353)
Q Consensus 221 ~~~~~i~IDE~QF~ 234 (353)
..+++|+||..+.+
T Consensus 151 ~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 151 GAIDVVVVDSVAAL 164 (366)
T ss_dssp TCCSEEEEECTTTC
T ss_pred CCCCEEEEeChHHh
Confidence 57999999999986
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.46 E-value=0.055 Score=53.18 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=31.2
Q ss_pred cceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++..++.||.|||||.- ++..++.....|.+++++-|..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~ 41 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTR 41 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHH
Confidence 34568999999999997 4666667777888999998854
No 48
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.43 E-value=0.098 Score=50.86 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=52.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceee------cccHhhhcc---cC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVS------AVELNKLIP---HT 220 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~------~~~~~~~~~---~~ 220 (353)
+.+.++.|+.+|||||-.++.+.+....|.+|+++.....-. .....+-|....-+. ...+.+++. ..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~---~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD---PIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc---HHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 568899999999999999999999998999999887643110 001112222111111 111222222 13
Q ss_pred CCccEEEEeccccc
Q psy8456 221 KDIDVIGIDEGQFV 234 (353)
Q Consensus 221 ~~~~~i~IDE~QF~ 234 (353)
.++++|+||..+.+
T Consensus 140 ~~~~lVVIDsl~~l 153 (356)
T 1u94_A 140 GAVDVIVVDSVAAL 153 (356)
T ss_dssp TCCSEEEEECGGGC
T ss_pred cCCCEEEEcCHHHh
Confidence 57999999999975
No 49
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.34 E-value=0.07 Score=50.96 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=28.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
..++.+|.|||||...+-.+......|.+++++-|.
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt 73 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 73 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 458899999999996655555555678899999886
No 50
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.14 E-value=0.034 Score=57.49 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHH----hCCEEEEEeee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQY----ANYRCMIVRYA 187 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~----~~~~~~~~k~~ 187 (353)
.+...++.|+.|+||||-+...+..+.. .+.++++..|+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 4678899999999999888777776653 46689988885
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.00 E-value=0.12 Score=43.69 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhhhcccCCCccEEEEccccChH----
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQFFP---- 85 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~ei~~~~~~~dvV~IDEaQFF~---- 85 (353)
-+|||+-+-..+..+...|.+++.+.. -+... . ++ ..++++++|||.+.++
T Consensus 46 G~GKTtL~~~i~~~~~~~g~~~~~~~~-~~~~~--~-------------------~~---~~~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 46 GAGKSHLLQAWVAQALEAGKNAAYIDA-ASMPL--T-------------------DA---AFEAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp TTTTCHHHHHHHHHHHTTTCCEEEEET-TTSCC--C-------------------GG---GGGCSEEEEESTTCCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEcH-HHhhH--H-------------------HH---HhCCCEEEEeCccccChHHH
Confidence 468887666665555555655544432 11110 0 11 2358999999999984
Q ss_pred -HHHHHHHHHHhCCCE-EEEEe
Q psy8456 86 -DVVSFAESMANAGKI-VVVAA 105 (353)
Q Consensus 86 -dIv~l~~~l~~~G~~-VivaG 105 (353)
.+.++.+.+.+.|++ +++.+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits 122 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGS 122 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEC
Confidence 356777777778887 66655
No 52
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.95 E-value=0.021 Score=58.98 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCChhh-----hc---ccCCCccEEEEccc
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNK-----LI---PHTKDIDVIGIDEG 81 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~l~e-----i~---~~~~~~dvV~IDEa 81 (353)
=+|||+-+...+..+...|.+|++..|.- |.. ..+....| .++..+.++.. .. ....++|+|+|||+
T Consensus 214 GTGKTt~i~~l~~~l~~~g~~Vl~~ApT~--~Aa-~~L~e~~~--~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEa 288 (574)
T 3e1s_A 214 GTGKSTTTKAVADLAESLGLEVGLCAPTG--KAA-RRLGEVTG--RTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEV 288 (574)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSH--HHH-HHHHHHHT--SCEEEHHHHTTEETTEESCSSSSCCSCSEEEECCG
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEecCcH--HHH-HHhHhhhc--ccHHHHHHHHcCCcchhhhhhcccccCCEEEEcCc
Confidence 47999999888888899999999998842 211 11111111 11221111110 10 11236899999999
Q ss_pred cChH--HHHHHHHHHHhCCCEEEEEe
Q psy8456 82 QFFP--DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 82 QFF~--dIv~l~~~l~~~G~~VivaG 105 (353)
|.++ .+..+.+.+ ..|..|++.|
T Consensus 289 sml~~~~~~~Ll~~~-~~~~~lilvG 313 (574)
T 3e1s_A 289 SMMGDALMLSLLAAV-PPGARVLLVG 313 (574)
T ss_dssp GGCCHHHHHHHHTTS-CTTCEEEEEE
T ss_pred cCCCHHHHHHHHHhC-cCCCEEEEEe
Confidence 9996 344443322 3688888877
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.93 E-value=0.067 Score=55.60 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=32.4
Q ss_pred ccceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeee
Q psy8456 149 GQEKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~ 187 (353)
.++..++.+|.|||||+. ++..+.+....+.+++++.|.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~Pt 224 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPT 224 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcCh
Confidence 355678999999999998 677887777788899999885
No 54
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.87 E-value=0.063 Score=53.10 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=54.3
Q ss_pred CCCchHHHHHHHHHHHHHcCc-eEEEEeeccCC------CCCCCceee-ccCCceeeeecCChhhh----cccCCCccEE
Q psy8456 9 RINPYIVHFCRRIRRYQYANY-RCMIVRYAKDD------RYDTEKVAT-HDQQKLTAVSAVELNKL----IPHTKDIDVI 76 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agk-kvlv~Kp~iDt------Ry~~~~I~S-r~G~~~~Ai~i~~l~ei----~~~~~~~dvV 76 (353)
.-+|||+-|...+..+...|. ++++..|.--. |-+.. ..| |.-.............+ ......+++|
T Consensus 54 aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~-~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (459)
T 3upu_A 54 AGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE-ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVL 132 (459)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC-EEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc-hhhHHHHhccCcccccccchhcccccccccCCCEE
Confidence 358999988888888888887 78998884210 11111 111 21111111000000001 0123468999
Q ss_pred EEccccChH-HHHHHHHHHHhCCCEEEEEe
Q psy8456 77 GIDEGQFFP-DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 77 ~IDEaQFF~-dIv~l~~~l~~~G~~VivaG 105 (353)
+|||+|.++ .+......+...+..|++.|
T Consensus 133 iiDE~~~~~~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 133 ICDEVSMYDRKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp EESCGGGCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECchhCCHHHHHHHHHhccCCCEEEEEC
Confidence 999999996 44443333444788899888
No 55
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.86 E-value=0.041 Score=52.02 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=26.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHH-HhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQ-YANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~-~~~~~~~~~k~ 186 (353)
..-+++||.|+|||+-+...++... ..|.+|+.+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 4558999999999976666666666 77888876653
No 56
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.81 E-value=0.075 Score=48.28 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=26.3
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+.-++.+|+|||||...+..+.. .+.+++++-|.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCC
Confidence 44688999999999876655433 48889999886
No 57
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.73 E-value=0.046 Score=54.88 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=33.2
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+.+.+++||-||||||-+..-+..+...|++|+++.-
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5677889999999999999999999999999998764
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.71 E-value=0.22 Score=42.54 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=25.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH-H--HhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY-Q--YANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~-~--~~~~~~~~~k~~~ 188 (353)
..-++.+|+|||||...+-.+-.. . ..+.+++++-|..
T Consensus 41 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 346889999999997554433332 1 2355788888853
No 59
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.71 E-value=0.15 Score=44.53 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=31.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH-HHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY-QYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~-~~~~~~~~~~k~~ 187 (353)
+.+.++.|+.++|||+-.++-+.+. ...|.+|+++...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5688999999999999999988775 5568889888654
No 60
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.51 E-value=0.2 Score=48.12 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=78.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCC-CCCC-Cce---eeccCccc-----ceeecccHhhhc-
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDD-RYDT-EKV---STHDQQKL-----TAVSAVELNKLI- 217 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~-R~~~-~~i---~s~~g~~~-----~a~~~~~~~~~~- 217 (353)
.+.+..++||.||||||-+-.-+..+...+.+|++..- |. |.+. +.. ..+.|..+ ...+.....+-+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~--D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS--DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee--cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36788899999999999888878778888888887643 32 2110 000 01112100 000100111111
Q ss_pred -ccCCCccEEEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCC-------ccHHHHHHH
Q psy8456 218 -PHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEF-------PDVVSFAES 289 (353)
Q Consensus 218 -~~~~~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f-------~~~~~~~~~ 289 (353)
....++|+++||.+-.. +.......+|..+...+..++| .+ .++++.+..
T Consensus 206 ~~~~~~~d~vliDtaG~~---------------------~~~~~l~~eL~~i~ral~~de~-llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRS---------------------ETNRNLMDEMKKIARVTKPNLV-IFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp HHHHHTCSEEEEEECCSC---------------------CTTTCHHHHHHHHHHHHCCSEE-EEEEEGGGTTHHHHHHHH
T ss_pred HHHhccchhhHHhhccch---------------------hHHHHHHHHHHHHHHHhcCCCC-EEEEecHHHHHHHHHHHH
Confidence 11256889999987653 2245567777777665554443 22 468888887
Q ss_pred HH-hCCC-EEEEEeccccc
Q psy8456 290 MA-NAGK-IVVVAALDGTF 306 (353)
Q Consensus 290 ~~-~~g~-~Vi~~gLd~df 306 (353)
+. ..|+ .|++-=||++-
T Consensus 264 ~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 264 FNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp HHHHSCCCEEEEECGGGCS
T ss_pred HHHhcCCCEEEEeCcCCcc
Confidence 77 4577 46667777754
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.33 E-value=0.17 Score=44.54 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=25.6
Q ss_pred ceeeeeccCCCCchhHHHHHHH-HHH------HhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIR-RYQ------YANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~-~~~------~~~~~~~~~k~~ 187 (353)
+.-++.+|+|||||...+--+- ... ..+.+++++-|.
T Consensus 63 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 3468899999999987443332 221 347789999886
No 62
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.24 E-value=0.52 Score=43.54 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=30.1
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
-++.|+-|+||||-.+..++....+|++|+++.-
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5678999999999999999999999999986654
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.10 E-value=0.093 Score=45.95 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=24.5
Q ss_pred eeeeeccCCCCchhHHH-HHHHHH--------HHhCCEEEEEeeec
Q psy8456 152 KEVILGPMFSGKTTELI-RRIRRY--------QYANYRCMIVRYAK 188 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li-~~~~~~--------~~~~~~~~~~k~~~ 188 (353)
.-++.+|.|||||...+ -.+... ...+.+++++-|..
T Consensus 59 ~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 45889999999997533 223322 23677889888864
No 64
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.09 E-value=0.12 Score=54.27 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred ccceeeeeccCCCCchhH-HHHHHHHHHHhCCEEEEEeeec
Q psy8456 149 GQEKEVILGPMFSGKTTE-LIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~-Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.++..++.+|.|||||+. ++..+......+.+++++-|..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr 280 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTR 280 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHH
Confidence 356678999999999997 6767767677888999999853
No 65
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.99 E-value=0.098 Score=44.54 Aligned_cols=36 Identities=28% Similarity=0.151 Sum_probs=29.1
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+.+.++.|+|+|||||-.-.-...+...|.++.++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 557789999999999987777777777788887664
No 66
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.99 E-value=0.12 Score=48.55 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=25.4
Q ss_pred eeeeccCCCCchhHHHHHHHHHHH---hCCEEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQY---ANYRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~---~~~~~~~~k~~ 187 (353)
-++.+|+|||||...+-.+..... .+.+++++-|.
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 588999999999865554443321 45688988886
No 67
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.98 E-value=0.12 Score=51.45 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=50.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCC--Cceee---ccCccc------ceeecccHhhhccc
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDT--EKVST---HDQQKL------TAVSAVELNKLIPH 219 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~--~~i~s---~~g~~~------~a~~~~~~~~~~~~ 219 (353)
....++|+.|+||||-...-+..+...|++|+++.. |.+... +...+ +.|... +..+..-+.+.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~--D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA--DTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC--SCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec--cccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999889999998865 433211 00000 001000 00001112233333
Q ss_pred CCCccEEEEeccccc
Q psy8456 220 TKDIDVIGIDEGQFV 234 (353)
Q Consensus 220 ~~~~~~i~IDE~QF~ 234 (353)
..++|+|+||.+-.+
T Consensus 178 ~~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 178 FKKADVLIIDTAGRH 192 (432)
T ss_dssp TSSCSEEEEECCCSC
T ss_pred hhCCCEEEEcCCCCc
Confidence 478999999999874
No 68
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.93 E-value=0.17 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=19.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+.+-+|+|||+|||||-.++-+.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347799999999999877766544
No 69
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.93 E-value=0.087 Score=48.84 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=27.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHH---HhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQ---YANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~---~~~~~~~~~k~~~ 188 (353)
..-++.+|+|||||...+..+...- ..+.+++++-|..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 85 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR 85 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH
Confidence 4568899999999987655544431 2467899998854
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.92 E-value=0.051 Score=50.41 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.8
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHh---CCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYA---NYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~---~~~~~~~k 185 (353)
+..-+++||-|+||||-+-..++..... +..++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3466899999999998766655555544 66666655
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.90 E-value=0.094 Score=44.13 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=17.7
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHh
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYA 177 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~ 177 (353)
.+++||-|+|||+-+-..++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 6899999999997555444444333
No 72
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.83 E-value=0.13 Score=53.34 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=31.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH-HHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY-QYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~-~~~~~~~~~~k~~~ 188 (353)
++.-++.||.|||||+.....+.+. ...|.+++++-|..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 4567899999999999987776554 33688999999865
No 73
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.65 E-value=0.082 Score=43.16 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCM 182 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~ 182 (353)
+-++.||+||||||- .+.+ +.-|..++
T Consensus 3 ~I~l~G~~GsGKsT~-a~~L---~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEF-AKLL---KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHH-HHHH---HHTTCEEE
T ss_pred EEEEECCCCCCHHHH-HHHH---HHCCCcEE
Confidence 357899999999984 4555 44466554
No 74
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.62 E-value=0.3 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhC
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYAN 178 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~ 178 (353)
--+++||.|+|||+-.-..++.+...+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 458999999999965554444444433
No 75
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.61 E-value=0.78 Score=44.48 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=27.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k 185 (353)
.+++..++||.||||||-|-.-+..+... ..+++++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 46678999999999999877776666655 45665554
No 76
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.42 E-value=0.13 Score=45.02 Aligned_cols=38 Identities=13% Similarity=-0.043 Sum_probs=33.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+++.+++||.+|||||-+++-+......|.+|+++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56889999999999999999998888888899988654
No 77
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.40 E-value=0.13 Score=43.53 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=26.1
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
-++.|+++|||||-.-+-..++...|..++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 478999999999988777777777898887554
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.37 E-value=0.16 Score=47.34 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=23.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVR 185 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k 185 (353)
.-+++||.|+||||-+-..++..... +..++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 57899999999998775555544443 45555444
No 79
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.29 E-value=0.21 Score=51.97 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=29.0
Q ss_pred cceeeeeccCCCCchhHHHHHHH-HHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIR-RYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~-~~~~~~~~~~~~k~~ 187 (353)
++.-++.||.|||||+.....+- .....|.+++++-|.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45578999999999988744443 334468999999996
No 80
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.28 E-value=0.14 Score=50.19 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=28.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh-----CCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA-----NYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~-----~~~~~~~k~~~ 188 (353)
...++.+|||||||...+--+...... +.+++++-|..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 65 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 65 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCH
Confidence 346889999999998876666555444 77899998863
No 81
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.27 E-value=0.22 Score=50.04 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
..-+++||.|+|||+-+-..++. .|..++-+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~---l~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE---LGYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH---TTCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeC
Confidence 35689999999999755444333 3777665543
No 82
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.21 E-value=0.11 Score=48.72 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=26.7
Q ss_pred eeeeeccCCCCchhHHHHHHHHH-HH--hCCEEEEEeeec
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY-QY--ANYRCMIVRYAK 188 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~-~~--~~~~~~~~k~~~ 188 (353)
.-++.+|+|||||...+..+... .. .+.+++++-|..
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 35889999999998855544433 22 567899998863
No 83
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.12 E-value=0.068 Score=53.87 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=34.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDR 191 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R 191 (353)
..+.+++|+-||||||-+..-++.+...|++|+++.- |++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~--D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS--DTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC--CCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC--CCc
Confidence 4567889999999999999999999999999999863 554
No 84
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.10 E-value=0.11 Score=43.50 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+-++.|+++|||||-.-.-..++...|..+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 357899999999997766666676677777766
No 85
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=92.08 E-value=0.39 Score=47.06 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=27.9
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhC--CEEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYAN--YRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~--~~~~~~k~~ 187 (353)
-++..+||+|||-..+..+..+...+ .+++|+-|.
T Consensus 59 ~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 95 (500)
T 1z63_A 59 ICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL 95 (500)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH
Confidence 35667999999999888888776554 789999884
No 86
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.00 E-value=0.14 Score=49.91 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=29.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh-----CCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA-----NYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~-----~~~~~~~k~~ 187 (353)
..-++.+|||||||...+--+...... +.+++++-|.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 446889999999998876666555444 7889999986
No 87
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.97 E-value=0.13 Score=45.74 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=14.6
Q ss_pred eeeeeccCCCCchhHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~ 171 (353)
.-+++||.||||||- ++++
T Consensus 3 pIVi~GPSG~GK~Tl-~~~L 21 (186)
T 1ex7_A 3 PIVISGPSGTGKSTL-LKKL 21 (186)
T ss_dssp CEEEECCTTSSHHHH-HHHH
T ss_pred EEEEECCCCCCHHHH-HHHH
Confidence 458999999999984 4443
No 88
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.88 E-value=0.11 Score=45.23 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=25.5
Q ss_pred eeeeeccCCCCchhH-HHHHHHHHH--HhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTE-LIRRIRRYQ--YANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~-Li~~~~~~~--~~~~~~~~~k~~ 187 (353)
.-++.+|+|||||.. ++-.+.+.. ..+.+++++-|.
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 358899999999977 444444432 245688888886
No 89
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.80 E-value=0.59 Score=40.11 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCCccEEEEccccChH--H-----HHHHHHHHHhCCCE-EEEEe
Q psy8456 70 TKDIDVIGIDEGQFFP--D-----VVSFAESMANAGKI-VVVAA 105 (353)
Q Consensus 70 ~~~~dvV~IDEaQFF~--d-----Iv~l~~~l~~~G~~-VivaG 105 (353)
..+..+|+|||+|.++ . +.++.+...+.+.. +++.+
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~ 145 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSA 145 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3557899999999984 2 34444445556655 55554
No 90
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.64 E-value=0.31 Score=42.21 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=25.7
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHH---hCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQY---ANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~---~~~~~~~~k~~ 187 (353)
.-++.+|+|||||...+-.+..... .+.+++++-|.
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 3688999999999876655544421 24489999886
No 91
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.58 E-value=0.17 Score=43.82 Aligned_cols=33 Identities=18% Similarity=-0.026 Sum_probs=24.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCM 182 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~ 182 (353)
+.+.+++|||||||||-+-.-...+...|..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~ 57 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCY 57 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 567889999999999876665566666676543
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.47 E-value=0.15 Score=49.81 Aligned_cols=33 Identities=15% Similarity=-0.043 Sum_probs=26.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
...+++||.++|||+-.++.+.. .|.+|+.+.-
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 34589999999999998888776 6677766655
No 93
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.46 E-value=0.32 Score=45.05 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA 177 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~ 177 (353)
..-+++||.|+|||+-+-..++.....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999998665555555443
No 94
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.44 E-value=0.16 Score=51.93 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=28.2
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhC-----CEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYAN-----YRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~-----~~~~~~k~~ 187 (353)
+...++.+|||||||...+--+......+ .+++++-|.
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt 70 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 70 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSS
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECC
Confidence 34568999999999998777666553332 678888885
No 95
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.38 E-value=0.26 Score=45.53 Aligned_cols=65 Identities=20% Similarity=0.037 Sum_probs=35.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecc-cHhhhc---ccCCCccEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV-ELNKLI---PHTKDIDVI 226 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~-~~~~~~---~~~~~~~~i 226 (353)
...++.||.|+|||+-.-..++. .+..++-+..+. .+ .. .+. .+.+.. +...+..++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~---l~~~~~~i~~~~------------~~--~~--~i~~~~~~~~~~~~~~~~~~vl 109 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD---VNADMMFVNGSD------------CK--ID--FVRGPLTNFASAASFDGRQKVI 109 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH---TTEEEEEEETTT------------CC--HH--HHHTHHHHHHHBCCCSSCEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH---hCCCEEEEcccc------------cC--HH--HHHHHHHHHHhhcccCCCCeEE
Confidence 45678888999999655443332 255555554321 01 00 000 111111 223478999
Q ss_pred EEeccccc
Q psy8456 227 GIDEGQFV 234 (353)
Q Consensus 227 ~IDE~QF~ 234 (353)
+|||+|++
T Consensus 110 iiDEi~~l 117 (324)
T 3u61_B 110 VIDEFDRS 117 (324)
T ss_dssp EEESCCCG
T ss_pred EEECCccc
Confidence 99999997
No 96
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.34 E-value=0.14 Score=53.18 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=31.5
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++.-++.+|.|||||+.....+.+.-..|.+++++-|..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r 78 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLR 78 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcH
Confidence 455689999999999988777666555688999999865
No 97
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.27 E-value=0.39 Score=42.71 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=24.1
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHH------------hCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQY------------ANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~------------~~~~~~~~k~~ 187 (353)
.-++.+|+|||||...+--+-..-. .+.+++++-|.
T Consensus 62 ~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt 109 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109 (253)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSS
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECC
Confidence 4578899999999864443333221 23578888886
No 98
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=91.26 E-value=0.33 Score=52.93 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=30.8
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCC--EEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANY--RCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~--~~~~~k~~ 187 (353)
-++.++||+|||-..+..+..+...|+ +++++-|.
T Consensus 173 ~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~ 209 (968)
T 3dmq_A 173 VLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE 209 (968)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH
Confidence 477889999999999999999888876 99999985
No 99
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.18 E-value=0.11 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=18.3
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+.+.+++||+|||||| |.+.+..
T Consensus 11 ~~~~i~l~G~sGsGKsT-l~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGT-LIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHH-HHHHHHH
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHH
Confidence 45678899999999999 5555543
No 100
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.18 E-value=0.14 Score=51.13 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=26.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh---CCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA---NYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~---~~~~~~~k~~~ 188 (353)
+..++.+|+|||||.-.+..+...-.. +.+++++-|..
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 566889999999998755444433222 44899988864
No 101
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.13 E-value=0.39 Score=44.63 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=26.3
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHH---HhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQ---YANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~---~~~~~~~~~k~~ 187 (353)
..-++.+|+|||||...+-.+...- ..+.+++++-|.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 3468899999999987655554431 235689999886
No 102
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.07 E-value=0.52 Score=54.71 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=52.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccce---eecccHhhhccc------CC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA---VSAVELNKLIPH------TK 221 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a---~~~~~~~~~~~~------~~ 221 (353)
++.++.||.++||||-+++.+.+....|.+|+++.-....+- ....+.|....- .....+.++... ..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~q---l~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHH---HHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Confidence 478899999999999999999999989999998865432210 011222321111 111233333211 35
Q ss_pred CccEEEEeccccc
Q psy8456 222 DIDVIGIDEGQFV 234 (353)
Q Consensus 222 ~~~~i~IDE~QF~ 234 (353)
++++|+||+.|.+
T Consensus 810 ~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 810 AVDVIVVDSVAAL 822 (1706)
T ss_dssp CCSEEEESCSTTC
T ss_pred CCCEEEEechhhh
Confidence 7999999999985
No 103
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.06 E-value=0.23 Score=41.95 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=24.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+...++.|+|+|||||-+-.-...+...|..++.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 456678999999999965544444455677666443
No 104
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.97 E-value=0.23 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=28.8
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+.+.++.|+|+|||||-.-.-..++...+..+..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 456789999999999987777777777888876553
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.95 E-value=0.076 Score=44.49 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred ceeeeeccCCCCchhHH
Q psy8456 151 EKEVILGPMFSGKTTEL 167 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~L 167 (353)
.+.+++|+|+|||||-.
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45689999999999854
No 106
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.79 E-value=0.18 Score=46.98 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=24.5
Q ss_pred eeeeccCCCCchhHHHH-HHHHHH--HhCCEEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIR-RIRRYQ--YANYRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~-~~~~~~--~~~~~~~~~k~~ 187 (353)
-++.+|+|||||...+- .+.... ..+.+++++-|.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 57899999999977433 333322 246689999886
No 107
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.73 E-value=0.25 Score=41.48 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=24.9
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
-++.|+++|||||-.-.-..++...|..++-.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999997766666666678877654
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.70 E-value=0.22 Score=42.08 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..+++||.|+||||-+-..++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999998665544444
No 109
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.70 E-value=0.19 Score=44.66 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=24.6
Q ss_pred eeeeccCCCCchhHHHHHHHHH-H--HhCCEEEEEeee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY-Q--YANYRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~-~--~~~~~~~~~k~~ 187 (353)
-++.+|+|||||...+-.+... . ..+.+++++-|.
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 5889999999997744443332 1 246688988886
No 110
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.58 E-value=0.83 Score=42.27 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=35.1
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEEEEeccc
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQ 232 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i~IDE~Q 232 (353)
-+++||.|+|||+- ++.+.+ ..+.....+....-. ....+..++....+..+++|||+|
T Consensus 58 vll~G~~GtGKT~l-a~~ia~--~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~vl~lDEi~ 116 (338)
T 3pfi_A 58 ILFSGPAGLGKTTL-ANIISY--EMSANIKTTAAPMIE------------------KSGDLAAILTNLSEGDILFIDEIH 116 (338)
T ss_dssp EEEECSTTSSHHHH-HHHHHH--HTTCCEEEEEGGGCC------------------SHHHHHHHHHTCCTTCEEEEETGG
T ss_pred EEEECcCCCCHHHH-HHHHHH--HhCCCeEEecchhcc------------------chhHHHHHHHhccCCCEEEEechh
Confidence 58999999999965 444422 234444333221100 111233333334567899999999
Q ss_pred cc
Q psy8456 233 FV 234 (353)
Q Consensus 233 F~ 234 (353)
.+
T Consensus 117 ~l 118 (338)
T 3pfi_A 117 RL 118 (338)
T ss_dssp GC
T ss_pred hc
Confidence 86
No 111
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.48 E-value=0.27 Score=42.10 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=27.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+.+-++.|+|+|||||-.-.-...+...+..+.+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 456789999999999976666666777788776544
No 112
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.47 E-value=0.28 Score=45.93 Aligned_cols=84 Identities=13% Similarity=-0.004 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccc------ccccccccceeeee
Q psy8456 83 FFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDA------AFTKRIGQEKEVIL 156 (353)
Q Consensus 83 FF~dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A------~f~~Ri~geI~vi~ 156 (353)
+|..+..+...+...++++++.|=..|-..+. .+..+..+++...++ .-+..|..+. .|+. +.+.+..++
T Consensus 100 s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~--~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~-l~geiv~l~ 175 (301)
T 1u0l_A 100 STYIIDKFLVLAEKNELETVMVINKMDLYDED--DLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEY-LKGKISTMA 175 (301)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHH-HSSSEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch--hHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHH-hcCCeEEEE
Confidence 45566666666667899999999988874321 112223333332221 1111233221 2222 246788999
Q ss_pred ccCCCCchhHHHHHH
Q psy8456 157 GPMFSGKTTELIRRI 171 (353)
Q Consensus 157 G~M~sGKt~~Li~~~ 171 (353)
||.||||||-| +.+
T Consensus 176 G~sG~GKSTll-~~l 189 (301)
T 1u0l_A 176 GLSGVGKSSLL-NAI 189 (301)
T ss_dssp CSTTSSHHHHH-HHH
T ss_pred CCCCCcHHHHH-HHh
Confidence 99999999754 444
No 113
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=90.36 E-value=0.073 Score=54.47 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.7
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhC------CEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYAN------YRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~------~~~~~~k~~~ 188 (353)
...++.+|||||||...+--+..+...+ .+++++-|..
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~ 66 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKV 66 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCH
Confidence 4568999999999988777766553322 7889999864
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.36 E-value=0.097 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=17.2
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.+.+.+++|||||||||-+ +.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~-~~L 29 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA-EAL 29 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHH
Confidence 3667889999999999854 444
No 115
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.32 E-value=0.19 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+.+|+||.+|||||-.++.+.++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 56899999999998877776665
No 116
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.32 E-value=0.46 Score=44.69 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=24.7
Q ss_pred ceeeeeccCCCCchhH-HHHHHHHHHHhC--------------------CEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTE-LIRRIRRYQYAN--------------------YRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~-Li~~~~~~~~~~--------------------~~~~~~k~~ 187 (353)
+.-++.+|+|||||.. ++-.+......+ .+++++-|.
T Consensus 53 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 4458899999999974 444444433222 468888886
No 117
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.30 E-value=0.22 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=34.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
..+.+|.||.|+|||+-+...+...-..|.++++..|+
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 35889999999999999999999998999999999985
No 118
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.27 E-value=0.28 Score=46.31 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHH---HHhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY---QYANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~---~~~~~~~~~~k~~ 187 (353)
.-++.+|+|||||...+-.+... ...+.+++++-|.
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 35889999999997655544433 2356789999985
No 119
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=90.23 E-value=0.67 Score=42.12 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=56.7
Q ss_pred ccCCCCchHHHHHHHHHHHHHcCc-eEEEEeeccCC---------CCCC---Cceee-ccCCc------e-eeeecCChh
Q psy8456 6 RDDRINPYIVHFCRRIRRYQYANY-RCMIVRYAKDD---------RYDT---EKVAT-HDQQK------L-TAVSAVELN 64 (353)
Q Consensus 6 ~~~~~~GKSteLLrr~~ry~~agk-kvlv~Kp~iDt---------Ry~~---~~I~S-r~G~~------~-~Ai~i~~l~ 64 (353)
.+..-+|||.-.+..+..+...+. +++++-|...- +++. ..+.. ..|.. . .-+.+.+..
T Consensus 134 ~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 213 (282)
T 1rif_A 134 NLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQ 213 (282)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEEEECHH
T ss_pred EcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEEEEchH
Confidence 355678999998888777665554 99999984210 0111 01111 11111 1 112333333
Q ss_pred hhcc----cCCCccEEEEccccChH-HHHHHHHHHHhCCCEEEEEeccccccc
Q psy8456 65 KLIP----HTKDIDVIGIDEGQFFP-DVVSFAESMANAGKIVVVAALDGTFQR 112 (353)
Q Consensus 65 ei~~----~~~~~dvV~IDEaQFF~-dIv~l~~~l~~~G~~VivaGLd~DFr~ 112 (353)
-+.. ...++++|+|||||-+. . .+...+........+.||..+..+
T Consensus 214 ~l~~~~~~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 214 TVVKQPKEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp HHTTSCGGGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCCT
T ss_pred HHHhhHHHHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCCC
Confidence 3321 23568999999999996 2 222233333234566677766543
No 120
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.04 E-value=0.18 Score=49.32 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=25.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhC---CEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYAN---YRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~---~~~~~~k~~ 187 (353)
...++.+|+|||||...+-.+-..-..+ .+++++-|.
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 5568899999999988544443332222 278888885
No 121
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.17 Score=56.18 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=33.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
+...++.+|.|||||.-....+......|.+++++.|..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Ptr 237 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 237 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcH
Confidence 345689999999999988888888878899999999963
No 122
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.96 E-value=0.29 Score=42.73 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=27.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHH-HhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQ-YANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~-~~~~~~~~~k 185 (353)
+...++.|+|+|||||-.-.-...+. ..|.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45678899999999997666556665 6787776664
No 123
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.71 E-value=0.72 Score=41.54 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=21.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.--+++||.|+|||+ |.+.+.+.. +..++.+..
T Consensus 51 ~~vll~G~~GtGKT~-la~~la~~l--~~~~~~i~~ 83 (310)
T 1ofh_A 51 KNILMIGPTGVGKTE-IARRLAKLA--NAPFIKVEA 83 (310)
T ss_dssp CCEEEECCTTSSHHH-HHHHHHHHH--TCCEEEEEG
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHh--CCCEEEEcc
Confidence 345899999999995 555554433 555554443
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.55 E-value=1.4 Score=52.00 Aligned_cols=132 Identities=13% Similarity=0.034 Sum_probs=75.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcc---cceeecccHhhhc---cc---CC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQK---LTAVSAVELNKLI---PH---TK 221 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~---~~a~~~~~~~~~~---~~---~~ 221 (353)
++.++.|+.++|||+-+++.+.+.+..|.+|+++.-....+-- ...+.|.. +--.+..++.++. .. ..
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql---~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~ 809 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH---HHHHcCCCccceEEecCCCHHHHHHHHHHHhhcc
Confidence 5678999999999999999999998888889988765433210 11122211 1111112233332 11 25
Q ss_pred CccEEEEecccccceecCCccchhhhhhhhccCCCCCcch---HHHHHHHhhccCCCCCCCCccHHHHHHHHH-hCCCEE
Q psy8456 222 DIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSP---FKTLANENAALNVPPPPEFPDVVSFAESMA-NAGKIV 297 (353)
Q Consensus 222 ~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~g~~V 297 (353)
.+++|+||..|-+.. ......++-++.| +.+++.+.. -...|| +.|++|
T Consensus 810 ~~~LVIIDsLq~i~~------------~~~~~~~~Gs~~q~La~Reis~ilr---------------~Lk~lAke~~v~V 862 (2050)
T 3cmu_A 810 AVDVIVVDSVAALTP------------KAEIEGEIGDSHMGLAARMMSQAMR---------------KLAGNLKQSNTLL 862 (2050)
T ss_dssp CCSEEEESCGGGCCC------------HHHHHSCTTCCCTTHHHHHHHHHHH---------------HHHHHHHTTTCEE
T ss_pred CCCEEEEcchhhhcc------------cccccCCCCchhhHHHHHHHHHHHH---------------HHHHHHHHhCCEE
Confidence 789999999997510 0111123344555 444444332 234455 489999
Q ss_pred EEEeccccccCCCch
Q psy8456 298 VVAALDGTFQRTGFN 312 (353)
Q Consensus 298 i~~gLd~df~~~~F~ 312 (353)
++.+=-..=-...|+
T Consensus 863 I~l~Qv~r~~e~~fg 877 (2050)
T 3cmu_A 863 IFINQIRMKIGVMFG 877 (2050)
T ss_dssp EEEECCEECTTCCSS
T ss_pred EEeccccccchhhcC
Confidence 887754443334564
No 125
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.52 E-value=0.56 Score=50.24 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=31.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
.-++.||+|||||.-.+..+...-..|.+++++-|.
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 357899999999999888887777789999999986
No 126
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=89.50 E-value=0.49 Score=51.90 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=31.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
+...++.+|.|||||+-.+-.+......|.+++++.|..
T Consensus 54 g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~Ptr 92 (997)
T 4a4z_A 54 GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIK 92 (997)
T ss_dssp TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 345789999999999865556666667789999999964
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.49 E-value=0.33 Score=42.38 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=27.3
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHH-HhCCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQ-YANYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~-~~~~~~~~~k 185 (353)
.|++..++||.||||||-|..-+.... ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 367889999999999997766664444 5666666654
No 128
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.47 E-value=0.51 Score=47.00 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=15.7
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-+++||.|+|||| |.+.+.+.
T Consensus 53 vLL~GppGtGKTt-lAr~ia~~ 73 (447)
T 3pvs_A 53 MILWGPPGTGKTT-LAEVIARY 73 (447)
T ss_dssp EEEECSTTSSHHH-HHHHHHHH
T ss_pred EEEECCCCCcHHH-HHHHHHHH
Confidence 5889999999986 45555543
No 129
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.41 E-value=0.25 Score=42.10 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=23.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMI 183 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~ 183 (353)
.+.++.|+++|||||-.-.-...+...| .++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 4568999999999997766666666566 5543
No 130
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.35 E-value=0.27 Score=51.94 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=29.6
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh-----CCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA-----NYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~-----~~~~~~~k~~~ 188 (353)
...++.+|||||||...+--+...... +.+++++-|..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~ 306 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCH
Confidence 346889999999998877776665444 78899998854
No 131
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.33 E-value=0.3 Score=40.90 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=20.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYAN 178 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~ 178 (353)
.+-++.|+++|||||-.-.-..++...|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3568999999999996555555555455
No 132
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.27 E-value=0.33 Score=44.48 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=32.3
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEeee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVRYA 187 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k~~ 187 (353)
.|++.+++||.+|||||-+...+...... |.+|+++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 46789999999999999999888887765 7788877643
No 133
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.12 E-value=0.28 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+.+|+|||+|||||--.+-+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999866655544
No 134
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.39 Score=52.77 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=30.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
..-++.+|.|||||....-.+......|.+++++.|.
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 4468899999999998766666666788999999996
No 135
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.02 E-value=0.81 Score=41.79 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhccc-CCCccEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPH-TKDIDVIGID 229 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~-~~~~~~i~ID 229 (353)
..-+++||-|+|||+- ++.+.+.. +..+..+.... +. ...++...+.. ..+..+++||
T Consensus 39 ~~vll~G~~GtGKT~l-a~~i~~~~--~~~~~~~~~~~--------~~----------~~~~l~~~l~~~~~~~~~l~lD 97 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL-AHVIAHEL--GVNLRVTSGPA--------IE----------KPGDLAAILANSLEEGDILFID 97 (324)
T ss_dssp CCCEEECCTTCCCHHH-HHHHHHHH--TCCEEEECTTT--------CC----------SHHHHHHHHTTTCCTTCEEEET
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHh--CCCEEEEeccc--------cC----------ChHHHHHHHHHhccCCCEEEEE
Confidence 3468999999999964 44444322 44433322110 00 01223333333 4567899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|+|.+
T Consensus 98 Ei~~l 102 (324)
T 1hqc_A 98 EIHRL 102 (324)
T ss_dssp TTTSC
T ss_pred CCccc
Confidence 99986
No 136
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=88.93 E-value=0.86 Score=48.15 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
.++.-++.+|.|||||+.+...+. ..|.+++++.|.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~g~~vLVl~PT 266 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQGYKVLVLNPS 266 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HTTCCEEEEESC
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HCCCeEEEEcch
Confidence 345567899999999998876544 367899999995
No 137
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.93 E-value=1.9 Score=40.37 Aligned_cols=31 Identities=0% Similarity=-0.332 Sum_probs=24.8
Q ss_pred cCCCCchHHHHHHHHHHHH-HcCceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRYQ-YANYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~-~agkkvlv~Kp~ 37 (353)
+..-+|||...+.-+..+. ..+.+++++-|.
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 5667999999888876554 468899999995
No 138
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.82 E-value=0.18 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+.+|+||.+|||||-.++.+.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 356899999999998877766553
No 139
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.80 E-value=0.82 Score=53.13 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=52.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccce---eecccHhhh---cc---cCC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA---VSAVELNKL---IP---HTK 221 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a---~~~~~~~~~---~~---~~~ 221 (353)
.+.+|.||.++||||-.++.+.+....|.+|+++........ ....+.|....- ...++..++ +. ...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~---~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~ 460 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 460 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH---HHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999998876542210 011222222111 111222222 21 135
Q ss_pred CccEEEEeccccc
Q psy8456 222 DIDVIGIDEGQFV 234 (353)
Q Consensus 222 ~~~~i~IDE~QF~ 234 (353)
++++|+||..|-+
T Consensus 461 ~~~lVVIDSL~al 473 (1706)
T 3cmw_A 461 AVDVIVVDSVAAL 473 (1706)
T ss_dssp CCSEEEESCSTTC
T ss_pred CCCEEEECCHHHh
Confidence 7999999999975
No 140
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.73 E-value=0.3 Score=43.92 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.8
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
.+...++.||.+|||||.+-+-...+.. |..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4567789999999999988777777766 7777654
No 141
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.72 E-value=0.14 Score=44.07 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=26.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+.++.|+.||||||-+-.-...+...|..|.+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3578999999999977666666666777777664
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.71 E-value=0.37 Score=45.33 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRY 186 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~ 186 (353)
.+.+..++||.||||||-+..-+..+.. +|++|+++.-
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3567889999999999999998888875 8999998874
No 143
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.67 E-value=0.46 Score=40.40 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=46.6
Q ss_pred eeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecc--cHhhhccc-CCCccEEEEec
Q psy8456 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV--ELNKLIPH-TKDIDVIGIDE 230 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~--~~~~~~~~-~~~~~~i~IDE 230 (353)
|..+--|+||||-...-+..+...|++|+++.. |...+...........++.++.. .+.+++.. ..+||+|+||=
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~--D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDT--DPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC--CTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC--CCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEEC
Confidence 334557899999999999999889999999975 32222111111111123333322 23333332 46799999996
Q ss_pred ccc
Q psy8456 231 GQF 233 (353)
Q Consensus 231 ~QF 233 (353)
.-.
T Consensus 84 ~~~ 86 (206)
T 4dzz_A 84 AGS 86 (206)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 144
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.64 E-value=0.21 Score=42.55 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=22.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+.+-++.|+|+|||||-.-.-..++ .|..++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEE
Confidence 3456899999999999765544444 35666644
No 145
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.62 E-value=0.44 Score=40.85 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=28.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+++.+++||.+|||||-+..-+. ..|.+|+++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 56889999999999998888777 56888888764
No 146
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.45 E-value=0.14 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..+.+|+||.+|||||-.++.+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 346789999999999887776655
No 147
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.38 E-value=0.17 Score=45.77 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=17.2
Q ss_pred eecccccccccccccccceeeeeccCCCCchhHHHH
Q psy8456 134 VCMSCFRDAAFTKRIGQEKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 134 vC~~CG~~A~f~~Ri~geI~vi~G~M~sGKt~~Li~ 169 (353)
-|..|-..+.-++...+...++.|+++|||||.+-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 8 PKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp ---------------CCEEEEEECSTTSSHHHHHTT
T ss_pred hhccCCCCcccccccCceEEEEECCCCCCHHHHHHH
Confidence 355566665555554556778999999999997643
No 148
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=88.35 E-value=0.42 Score=46.94 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=57.5
Q ss_pred cCCCCchHHHHHHHHHHHHHcCc-eEEEEeeccC---------CCC---CCCceee-ccCCce------ee-eecCChhh
Q psy8456 7 DDRINPYIVHFCRRIRRYQYANY-RCMIVRYAKD---------DRY---DTEKVAT-HDQQKL------TA-VSAVELNK 65 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~agk-kvlv~Kp~iD---------tRy---~~~~I~S-r~G~~~------~A-i~i~~l~e 65 (353)
++.-+|||.-.+.-+..+...++ +++++-|... .++ ....+.. +.|... .+ +.+.+...
T Consensus 135 ~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~ 214 (510)
T 2oca_A 135 LPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT 214 (510)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHH
T ss_pred eCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEEEEeHHH
Confidence 45669999999888877766666 9999999521 112 1112221 112111 11 22333332
Q ss_pred hcc----cCCCccEEEEccccChHHHHHHHHHHHhCCCEEEEEeccccc
Q psy8456 66 LIP----HTKDIDVIGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTF 110 (353)
Q Consensus 66 i~~----~~~~~dvV~IDEaQFF~dIv~l~~~l~~~G~~VivaGLd~DF 110 (353)
+.. ...++++|+|||+|.+.. .++...+......+.+.||..+-
T Consensus 215 l~~~~~~~~~~~~liIiDE~H~~~~-~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 215 VVKQPKEWFSQFGMMMNDECHLATG-KSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp HTTSCGGGGGGEEEEEEETGGGCCH-HHHHHHGGGCTTCCEEEEEESCG
T ss_pred HhhchhhhhhcCCEEEEECCcCCCc-ccHHHHHHhcccCcEEEEEEeCC
Confidence 321 245689999999999962 12223334444445566776655
No 149
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.26 E-value=0.55 Score=41.82 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred CccEEEEccccCh--H--------HHHHHHHHHHhCCCEEEEEecc
Q psy8456 72 DIDVIGIDEGQFF--P--------DVVSFAESMANAGKIVVVAALD 107 (353)
Q Consensus 72 ~~dvV~IDEaQFF--~--------dIv~l~~~l~~~G~~VivaGLd 107 (353)
...+|+|||||.+ + .+....+.-...|..|++.|-.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 3679999999998 2 2223333333568899999876
No 150
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.25 E-value=0.17 Score=43.09 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.0
Q ss_pred cceeeeeccCCCCchhHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~ 171 (353)
+.+.+++||++|||||- ++.+
T Consensus 2 g~ii~l~G~~GaGKSTl-~~~L 22 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT-CKRL 22 (189)
T ss_dssp EEEEEEECSTTSSHHHH-HHHH
T ss_pred CeEEEEECCCCCcHHHH-HHHH
Confidence 34678999999999984 4444
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.23 E-value=0.41 Score=45.51 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=32.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+.+..++||.||||||-+..-+..+...|.+|+++.-
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4577899999999999999999999888999998753
No 152
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=88.07 E-value=0.85 Score=44.84 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=24.0
Q ss_pred CCCchHHH-HHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVH-FCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSte-LLrr~~ry~~agkkvlv~Kp~ 37 (353)
.-||||+. ++..+.+....|.+++++-|.
T Consensus 28 TGsGKT~~~~~~~l~~~~~~~~~~lvl~Pt 57 (451)
T 2jlq_A 28 PGAGKTKRILPSIVREALLRRLRTLILAPT 57 (451)
T ss_dssp TTSSCCTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCHhhHHHHHHHHHHHhcCCcEEEECCC
Confidence 45899995 777777777788999999993
No 153
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=88.02 E-value=0.81 Score=48.24 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=24.3
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
.++..++.||.|||||+-+++++.. ++ +.+++-|.
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~---~~-~gl~l~Pt 188 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFS---AK-SGVYCGPL 188 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH---SS-SEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHh---cC-CeEEEeCH
Confidence 4567789999999999977766543 23 33555553
No 154
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.95 E-value=0.076 Score=53.67 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeecc---CCce-eeeecCChhhh-ccc-C---CCccEEEEcc
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHD---QQKL-TAVSAVELNKL-IPH-T---KDIDVIGIDE 80 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~---G~~~-~Ai~i~~l~ei-~~~-~---~~~dvV~IDE 80 (353)
-+|||+.+.+.+. .++++++.|..-.+ ..+..+. |... ....+...... ++. . -.+|+|+|||
T Consensus 171 GsGKTt~I~~~~~-----~~~~lVlTpT~~aa---~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 171 GCGKTKEILSRVN-----FEEDLILVPGRQAA---EMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDE 242 (446)
T ss_dssp TSCHHHHHHHHCC-----TTTCEEEESCHHHH---HHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEET
T ss_pred CCCHHHHHHHHhc-----cCCeEEEeCCHHHH---HHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeC
Confidence 4899999988764 26789999953332 2222221 1100 00111111111 111 1 1389999999
Q ss_pred ccChH-HHHHHHHHHHhCCCEEEEEe
Q psy8456 81 GQFFP-DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 81 aQFF~-dIv~l~~~l~~~G~~VivaG 105 (353)
++-++ .....+-.+. ....|++.|
T Consensus 243 ~sm~~~~~l~~l~~~~-~~~~vilvG 267 (446)
T 3vkw_A 243 GLMLHTGCVNFLVEMS-LCDIAYVYG 267 (446)
T ss_dssp GGGSCHHHHHHHHHHT-TCSEEEEEE
T ss_pred cccCCHHHHHHHHHhC-CCCEEEEec
Confidence 99987 4333332222 338888887
No 155
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.85 E-value=0.5 Score=41.91 Aligned_cols=35 Identities=31% Similarity=0.221 Sum_probs=31.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.+.++.|..|+||||-+.+-+..+. .|++|+++..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 5678999999999999999888888 9999998863
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.77 E-value=1.6 Score=41.34 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=20.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.--+++||+|+|||+ |.+.+.+.. +..++.+.
T Consensus 73 ~~ill~Gp~GtGKT~-la~~la~~l--~~~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTL-MAQTLAKHL--DIPIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHH-HHHHHHHHT--TCCEEEEE
T ss_pred CCEEEECCCCCCHHH-HHHHHHHHh--CCCEEEec
Confidence 346899999999995 555554432 55555443
No 157
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.73 E-value=0.53 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=29.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
...++|+.||||||-+-+-+..+...|.++-.++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 56789999999999877777777778888887775
No 158
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.67 E-value=0.43 Score=44.22 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=25.8
Q ss_pred CCccEEEEccccChH-------HHHHHHHHHHhCCCEEEEEe
Q psy8456 71 KDIDVIGIDEGQFFP-------DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~-------dIv~l~~~l~~~G~~VivaG 105 (353)
.+.++++|||+|+++ .+..+.+.+.+.|+.+++.+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS 138 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 347899999999985 13345555667888888877
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.63 E-value=0.45 Score=41.12 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=18.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+.+.+++||+||||||-+-.-...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678899999999998654444443
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.52 E-value=0.48 Score=42.91 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=16.5
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++||-|+|||+-+-..++..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999997555444443
No 161
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.52 E-value=0.21 Score=42.51 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.7
Q ss_pred ccceeeeeccCCCCchhHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~ 169 (353)
.+++..++||.||||||-+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467889999999999997653
No 162
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.50 E-value=0.33 Score=39.85 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=16.1
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+-++.||+||||||-.-.-..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999965444333
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.47 E-value=0.67 Score=54.68 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=51.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccce---eecccHhhh---cc---cCC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA---VSAVELNKL---IP---HTK 221 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a---~~~~~~~~~---~~---~~~ 221 (353)
.+.+|.||.++||||-+++.+.+....|.+|+++........ ....+.|....- ....++.++ +. ...
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~---~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~ 460 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 460 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH---HHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH---HHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhc
Confidence 478899999999999999999999988899998876542210 001112221111 111222222 22 135
Q ss_pred CccEEEEeccccc
Q psy8456 222 DIDVIGIDEGQFV 234 (353)
Q Consensus 222 ~~~~i~IDE~QF~ 234 (353)
.+++|+||..|-+
T Consensus 461 ~~~lIVIDSL~al 473 (2050)
T 3cmu_A 461 AVDVIVVDSVAAL 473 (2050)
T ss_dssp CCSEEEESCGGGC
T ss_pred CCcEEEECCHHHh
Confidence 7999999999975
No 164
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.46 E-value=0.21 Score=41.49 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.0
Q ss_pred ceeeeeccCCCCchhHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~ 169 (353)
...+++|||+|||||-+-.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4568999999999985433
No 165
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.38 E-value=1.4 Score=43.18 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=23.6
Q ss_pred CCCCchHHHH-HHHHHHHHHcCceEEEEeec
Q psy8456 8 DRINPYIVHF-CRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteL-Lrr~~ry~~agkkvlv~Kp~ 37 (353)
+.-||||.-. +..++.....|.+++++-|.
T Consensus 10 ~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 10 HPGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp CTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 3459999984 66666777788999999994
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.25 E-value=0.2 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.8
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++||.|+||||-+...++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999998665554443
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.24 E-value=0.84 Score=43.11 Aligned_cols=22 Identities=14% Similarity=-0.078 Sum_probs=16.4
Q ss_pred ceeeeeccCCCCchhHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~ 172 (353)
...+++||-++||||-...-++
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999875554444
No 168
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.21 E-value=0.53 Score=42.77 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=24.8
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+.++.|++||||||-.-.-...+...|..++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 568999999999997655555556678777654
No 169
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.15 E-value=1.6 Score=42.09 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeee---cCChhhhc---c---cCCCccEEEEc
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVS---AVELNKLI---P---HTKDIDVIGID 79 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~---i~~l~ei~---~---~~~~~dvV~ID 79 (353)
.=+||||-+++.+.+....|.+|+++.-....+ .....+.|...+.+. ..+..++. . ...++++|+||
T Consensus 70 pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~---~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVID 146 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAAGGIAAFIDAEHALD---PEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVID 146 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC---HHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 348999999999999998999999887642111 112233443322211 12233322 1 13569999999
Q ss_pred cccChH---H----------------HHHHHHH----HHhCCCEEEEEeccc
Q psy8456 80 EGQFFP---D----------------VVSFAES----MANAGKIVVVAALDG 108 (353)
Q Consensus 80 EaQFF~---d----------------Iv~l~~~----l~~~G~~VivaGLd~ 108 (353)
|.+.+- + +.+.... +.+.|++|++..-..
T Consensus 147 sl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 147 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp CGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 999862 1 1222333 357799998876543
No 170
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.05 E-value=0.67 Score=51.41 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=30.7
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
...++.+|.|||||+-.+-.+......|.+++++-|..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~Ptr 131 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTV 131 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSH
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechH
Confidence 45688999999999977776666667789999999863
No 171
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.97 E-value=0.54 Score=44.44 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.+++..++||.||||||-+-.-+..+...+.+|++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3678889999999999998888888887788888764
No 172
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.81 E-value=0.58 Score=41.93 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=31.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+..-++.|+.+|||||.+-.-...+...|..|..++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 45678899999999999988888888889999876543
No 173
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.60 E-value=1.3 Score=43.00 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=25.7
Q ss_pred ceeeeeccCCCCchhHH-HHHHHHHHHh-------CCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTEL-IRRIRRYQYA-------NYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~L-i~~~~~~~~~-------~~~~~~~k~~ 187 (353)
..-++.+|+|||||... +-.+.+.... +.+++++-|.
T Consensus 94 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Pt 138 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPT 138 (434)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSS
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecC
Confidence 45688999999999853 3344444332 4589999885
No 174
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.52 E-value=0.86 Score=50.17 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=31.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
+..++.+|.|||||+-++-.+.+....|.+++++-|..
T Consensus 72 ~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~Ptr 109 (1054)
T 1gku_B 72 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTS 109 (1054)
T ss_dssp CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccH
Confidence 44688999999999877777777777788999999864
No 175
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=86.51 E-value=1.4 Score=45.57 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=23.9
Q ss_pred CCCchHHH-HHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVH-FCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSte-LLrr~~ry~~agkkvlv~Kp~ 37 (353)
.=||||+. ++..++++...+.+++++-|.
T Consensus 195 TGSGKT~~~~lpil~~l~~~~~~vLvl~Pt 224 (618)
T 2whx_A 195 PGAGKTKRILPSIVREALKRRLRTLILAPT 224 (618)
T ss_dssp TTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEcCh
Confidence 34899998 677887777788899999993
No 176
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.42 E-value=0.62 Score=41.02 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.5
Q ss_pred eeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
++=|+-||||||.+-.-...++..|.+|++.+.-
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4569999999999888778888999999877643
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.32 E-value=0.69 Score=43.58 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee-cCCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA-KDDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIG 227 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~-~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ 227 (353)
.--+++||.|+|||+-. +.+.+.. .+..++.+... +-..| .|. ....+..+.. ......+|+
T Consensus 46 ~~iLL~GppGtGKT~la-~ala~~~-~~~~~~~i~~~~l~~~~--------~g~-----~~~~~~~lf~~a~~~~~~vl~ 110 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA-KAVATEA-NNSTFFSISSSDLVSKW--------LGE-----SEKLVKNLFQLARENKPSIIF 110 (322)
T ss_dssp SEEEEESSSSSCHHHHH-HHHHHHT-TSCEEEEEECCSSCCSS--------CCS-----CHHHHHHHHHHHHHTSSEEEE
T ss_pred ceEEEECCCCccHHHHH-HHHHHHc-CCCcEEEEEhHHHHhhh--------hhH-----HHHHHHHHHHHHHhcCCcEEE
Confidence 45689999999999644 4443321 25555544432 11111 111 1112222321 134578999
Q ss_pred Eeccccc
Q psy8456 228 IDEGQFV 234 (353)
Q Consensus 228 IDE~QF~ 234 (353)
|||++.+
T Consensus 111 iDEid~l 117 (322)
T 1xwi_A 111 IDEIDSL 117 (322)
T ss_dssp EETTTGG
T ss_pred eecHHHh
Confidence 9999975
No 178
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.28 E-value=0.56 Score=45.51 Aligned_cols=39 Identities=21% Similarity=0.078 Sum_probs=32.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCC
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDD 190 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~ 190 (353)
=.+++|+++||||+-+-..+.+....|..++++-|.-|.
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 357999999999998766777777889999999997654
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.20 E-value=0.6 Score=38.94 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.1
Q ss_pred cceeeeeccCCCCchhHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~ 169 (353)
+.+.+++||++|||||-+-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 56778999999999985433
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.18 E-value=0.48 Score=42.84 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=15.9
Q ss_pred eeeeccCCCCchhHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+++||-|+|||+-+-..++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 689999999999755444444
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.12 E-value=0.51 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+..-+++||.|+|||+ |.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~-la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTA-IAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHH
Confidence 3467899999999997 45555444
No 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.11 E-value=0.63 Score=44.63 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=32.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
+.-.+|+||++|||||-+-..+..+...|.+++++-|.-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 444689999999999988887777777899999988753
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.10 E-value=0.43 Score=41.16 Aligned_cols=25 Identities=28% Similarity=0.145 Sum_probs=19.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+...+++|||+|||||-.-.-...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567899999999998765555444
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.09 E-value=0.66 Score=44.52 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=22.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.--+++||.|+|||+ |.+.+. ...+..++.+..
T Consensus 149 ~~vLL~GppGtGKT~-la~aia--~~~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTM-LAKAVA--AESNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHH-HHHHHH--HHTTCEEEEECS
T ss_pred ceEEEECCCCCCHHH-HHHHHH--HhhcCcEEEeeH
Confidence 446899999999996 445542 345666665543
No 185
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=86.08 E-value=0.3 Score=52.91 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=28.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh-----CCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA-----NYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~-----~~~~~~~k~~~ 188 (353)
...++.+|||||||...+--+...... +.+++++-|..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~ 306 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCH
Confidence 446899999999998876666554333 77899998854
No 186
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.91 E-value=0.43 Score=43.01 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=35.7
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIGID 229 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ID 229 (353)
--+++||.|+|||+-+ +.+.+ ..+..++.+....- .....|. ....+..++. ......+++||
T Consensus 53 ~~ll~G~~GtGKT~la-~~la~--~~~~~~~~v~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~vl~iD 117 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLA-KAVAT--ETNATFIRVVGSEL-------VKKFIGE-----GASLVKDIFKLAKEKAPSIIFID 117 (285)
T ss_dssp EEEEESSSSSSHHHHH-HHHHH--HTTCEEEEEEGGGG-------CCCSTTH-----HHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eEEEECCCCCcHHHHH-HHHHH--HhCCCEEEEehHHH-------HHhccch-----HHHHHHHHHHHHHHcCCeEEEEE
Confidence 4689999999999654 44432 34555554433110 0000111 0111222221 13456899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|++.+
T Consensus 118 Eid~l 122 (285)
T 3h4m_A 118 EIDAI 122 (285)
T ss_dssp TTHHH
T ss_pred CHHHh
Confidence 99985
No 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.87 E-value=0.54 Score=41.50 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=33.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec-CCCCCCCceeeccCcccceeecccHhhhccc--CCCccEEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK-DDRYDTEKVSTHDQQKLTAVSAVELNKLIPH--TKDIDVIGI 228 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~-D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~--~~~~~~i~I 228 (353)
--+++||.|+|||+- .+.+.+ ..+..++.+.... ...+ .|. ....+..++.. .....+++|
T Consensus 41 ~vll~G~~GtGKT~l-a~~la~--~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~a~~~~~~vl~i 104 (262)
T 2qz4_A 41 GALLLGPPGCGKTLL-AKAVAT--EAQVPFLAMAGAEFVEVI--------GGL-----GAARVRSLFKEARARAPCIVYI 104 (262)
T ss_dssp EEEEESCTTSSHHHH-HHHHHH--HHTCCEEEEETTTTSSSS--------TTH-----HHHHHHHHHHHHHHTCSEEEEE
T ss_pred eEEEECCCCCCHHHH-HHHHHH--HhCCCEEEechHHHHhhc--------cCh-----hHHHHHHHHHHHHhcCCeEEEE
Confidence 358999999999964 444443 2355555444321 0001 010 11122222221 235689999
Q ss_pred eccccc
Q psy8456 229 DEGQFV 234 (353)
Q Consensus 229 DE~QF~ 234 (353)
||+|.+
T Consensus 105 Deid~l 110 (262)
T 2qz4_A 105 DEIDAV 110 (262)
T ss_dssp ECC---
T ss_pred eCcchh
Confidence 999985
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.84 E-value=0.25 Score=42.58 Aligned_cols=16 Identities=38% Similarity=0.202 Sum_probs=13.1
Q ss_pred eeeeeccCCCCchhHH
Q psy8456 152 KEVILGPMFSGKTTEL 167 (353)
Q Consensus 152 I~vi~G~M~sGKt~~L 167 (353)
+..++|||+|||||-.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568999999999854
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.72 E-value=1.1 Score=42.21 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+..+++||.|+||||- ++.+-+
T Consensus 52 ~~~ll~Gp~G~GKTTL-a~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL-AHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHH-HHHHHH
T ss_pred CeEEEECCCCCcHHHH-HHHHHH
Confidence 4568999999999975 444443
No 190
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.72 E-value=0.31 Score=41.53 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=17.0
Q ss_pred cceeeeeccCCCCchhHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+.+.+++||+||||||-+ +.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~-~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVR-KRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHH-HHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHH
Confidence 557789999999999854 4443
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.57 E-value=0.83 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=26.3
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k 185 (353)
.+++..++||.||||||-|---+.-+... ..++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 46788999999999999776655555544 44555443
No 192
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.56 E-value=0.28 Score=41.93 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=15.1
Q ss_pred cceeeeeccCCCCchhHHH
Q psy8456 150 QEKEVILGPMFSGKTTELI 168 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li 168 (353)
+..-+++|+|+|||||-.-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3456899999999998643
No 193
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=85.54 E-value=0.32 Score=41.49 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|.+..++||.||||||- ++.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl-~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL-VRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHH-HHHHHH
T ss_pred CCcEEEEECcCCCCHHHH-HHHHHh
Confidence 366788999999999985 444443
No 194
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.36 E-value=0.4 Score=44.31 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=29.0
Q ss_pred HhhhhccccceEeccceecccccc-cc--ccccc-ccceeeeeccCCCCchhHHHHHHH
Q psy8456 118 ILSLIPLAECVEKLTAVCMSCFRD-AA--FTKRI-GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 118 ~~~Ll~lAD~I~kL~AvC~~CG~~-A~--f~~Ri-~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+.-|.|..+.+.+++.++..-|.. +- .|+.+ .|++..++||.||||||- ++.+.
T Consensus 10 ~~~~~~~~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTL-lk~l~ 67 (267)
T 2zu0_C 10 SSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL-SATLA 67 (267)
T ss_dssp ----------CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHH-HHHHH
T ss_pred cCCCcCCCCceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHH-HHHHh
Confidence 455777777777777777544432 21 23444 467889999999999985 44443
No 195
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.35 E-value=0.59 Score=40.63 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCM 182 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~ 182 (353)
+..+.|+++|||||- .+.+.. .|..++
T Consensus 6 ~I~i~G~~GSGKST~-~~~L~~---lg~~~i 32 (218)
T 1vht_A 6 IVALTGGIGSGKSTV-ANAFAD---LGINVI 32 (218)
T ss_dssp EEEEECCTTSCHHHH-HHHHHH---TTCEEE
T ss_pred EEEEECCCCCCHHHH-HHHHHH---cCCEEE
Confidence 567999999999984 344433 465443
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.23 E-value=0.65 Score=43.95 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=31.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.++...++||.||||||-+-.-+..+...+.+|++..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 35678899999999999888888888777888887643
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.20 E-value=0.5 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=16.3
Q ss_pred ceeeeeccCCCCchhHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+.++.|+|+|||||-.-.-..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999996544333
No 198
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.16 E-value=0.48 Score=39.79 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
...++.|+|+|||||-.-.-..++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999655444433
No 199
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.14 E-value=0.75 Score=43.83 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.8
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
+....++||.||||||-+..-+..+...|++|+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456778999999999999999888888899999875
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.13 E-value=0.81 Score=43.01 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=35.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.+++.+|.|+.++||||-+++.+.+....|.+|++|....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3678999999999999999999988888889999998653
No 201
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=85.10 E-value=1.7 Score=42.89 Aligned_cols=29 Identities=7% Similarity=-0.069 Sum_probs=24.1
Q ss_pred CCCchHHH-HHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVH-FCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSte-LLrr~~ry~~agkkvlv~Kp~ 37 (353)
.-||||+. ++-.++.+...|.+++++-|.
T Consensus 30 TGsGKT~~~~l~il~~~~~~~~~~lvl~Pt 59 (459)
T 2z83_A 30 PGSGKTRKILPQIIKDAIQQRLRTAVLAPT 59 (459)
T ss_dssp TTSCTTTTHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEECch
Confidence 35899998 777777777788999999994
No 202
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.96 E-value=0.51 Score=39.84 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=16.6
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.++.|+|+|||||-.-.-...+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 4789999999999665544444
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.94 E-value=0.55 Score=39.45 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=17.3
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..-+++|||+|||||-.-.-..++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999998655544443
No 204
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=84.83 E-value=2 Score=42.21 Aligned_cols=29 Identities=3% Similarity=-0.053 Sum_probs=22.4
Q ss_pred CCCchHHH-HHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVH-FCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSte-LLrr~~ry~~agkkvlv~Kp~ 37 (353)
.-||||.- ++..+......|.+++++-|.
T Consensus 17 TGSGKT~~~l~~~l~~~~~~~~~~lil~Pt 46 (440)
T 1yks_A 17 PGAGKTRRFLPQILAECARRRLRTLVLAPT 46 (440)
T ss_dssp TTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcch
Confidence 45999998 466666666778899999993
No 205
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.78 E-value=0.46 Score=41.57 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=17.1
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.-++.|||||||||..-.-..++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999655444443
No 206
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=84.61 E-value=1.1 Score=45.10 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=24.7
Q ss_pred cceeeeeccCCCCchhHHHH-HHHHHHHh------CCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIR-RIRRYQYA------NYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~-~~~~~~~~------~~~~~~~k~~ 187 (353)
+...++.+|+|||||...+- .+...... +.+++++-|.
T Consensus 60 ~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 34567889999999986333 33333222 3488999886
No 207
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.57 E-value=0.92 Score=41.28 Aligned_cols=37 Identities=24% Similarity=0.096 Sum_probs=27.8
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHh----CCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYA----NYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~----~~~~~~~k~ 186 (353)
+..-++.||.+|||||..-+-...+... |..|.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re 65 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE 65 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC
Confidence 5677889999999999988888888777 999876653
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=84.56 E-value=1.3 Score=37.20 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CCCccEEEEccccCh--H-----HHHHHHHHHHhCCCEEEEEe
Q psy8456 70 TKDIDVIGIDEGQFF--P-----DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 70 ~~~~dvV~IDEaQFF--~-----dIv~l~~~l~~~G~~VivaG 105 (353)
..+++++++||.+.. + .+.++.+...+.|+++++..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITT 140 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 346899999999843 2 24455666667899988865
No 209
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.54 E-value=1.9 Score=37.44 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=12.6
Q ss_pred CCCccEEEEccccCh
Q psy8456 70 TKDIDVIGIDEGQFF 84 (353)
Q Consensus 70 ~~~~dvV~IDEaQFF 84 (353)
..++++|+|||||-+
T Consensus 165 ~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 165 LRSITYLVIDEADKM 179 (228)
T ss_dssp CTTCCEEEECCHHHH
T ss_pred cccceEEEEECHHHH
Confidence 467899999999964
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.48 E-value=1.7 Score=40.32 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=16.5
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..+++||-|+||||-+-..++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999766444433
No 211
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.19 E-value=0.85 Score=44.44 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.+++..++||.||||||-+-.-+..+...+.+|++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3678889999999999998888888877788888764
No 212
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.16 E-value=0.98 Score=39.11 Aligned_cols=35 Identities=20% Similarity=0.003 Sum_probs=25.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+.+..++|+.+|||||-+-.-...+...|..+.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45678999999999997665555555567666655
No 213
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=84.11 E-value=1.1 Score=43.40 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=44.6
Q ss_pred cCCCCchHHHHHHHHHHHHHcCceEEEEeeccCCC---------CCCCceee-ccCCceee-eecCChhhhc----ccCC
Q psy8456 7 DDRINPYIVHFCRRIRRYQYANYRCMIVRYAKDDR---------YDTEKVAT-HDQQKLTA-VSAVELNKLI----PHTK 71 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtR---------y~~~~I~S-r~G~~~~A-i~i~~l~ei~----~~~~ 71 (353)
++.-+|||...+..+... +++++++-|...-- ++...+.. +.+....+ +.+.+..-+. ...+
T Consensus 115 ~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~~~~~ 191 (472)
T 2fwr_A 115 LPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGN 191 (472)
T ss_dssp CCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTHHHHTT
T ss_pred eCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCCcCCEEEEEcHHHHHHHHHhcC
Confidence 456699999988887765 88999999962211 22221222 22222222 2233322221 1125
Q ss_pred CccEEEEccccChH
Q psy8456 72 DIDVIGIDEGQFFP 85 (353)
Q Consensus 72 ~~dvV~IDEaQFF~ 85 (353)
++++|+|||+|-+.
T Consensus 192 ~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 192 RFMLLIFDEVHHLP 205 (472)
T ss_dssp TCSEEEEETGGGTT
T ss_pred CCCEEEEECCcCCC
Confidence 69999999999985
No 214
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.11 E-value=1.6 Score=37.47 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=24.4
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
..+++|+.||||||-+-+-+..... .+++.++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~-~~~~~~i~~ 65 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN-EVKIGAMLG 65 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT-TSCEEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc-CCeEEEEec
Confidence 4578999999999977666665533 366766653
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.95 E-value=0.68 Score=40.28 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH------hCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY------ANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~------~~~~~~~~k~ 186 (353)
+++..++||.+|||||-+...+..+.. .+.+++.+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 568899999999999998888776433 2567776654
No 216
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.76 E-value=0.87 Score=37.44 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
--+++||.|+||| .|.+.++++
T Consensus 26 ~vll~G~~GtGKt-~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRM-TGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHH-HHHHHHHHS
T ss_pred CEEEECCCCCCHH-HHHHHHHHh
Confidence 3589999999998 567777765
No 217
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.68 E-value=0.59 Score=42.48 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=16.8
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+.+|+|||+|||||-..+-+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5689999999999965554444
No 218
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.66 E-value=2.1 Score=38.60 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=69.6
Q ss_pred cceeeeeccCCCCchhHHHHH-HHHHHHhCCEEEEEeeecCCCCC-------CCceeeccCcccceeecccHhhhcccCC
Q psy8456 150 QEKEVILGPMFSGKTTELIRR-IRRYQYANYRCMIVRYAKDDRYD-------TEKVSTHDQQKLTAVSAVELNKLIPHTK 221 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~-~~~~~~~~~~~~~~k~~~D~R~~-------~~~i~s~~g~~~~a~~~~~~~~~~~~~~ 221 (353)
....++.|+-+|+|+++.+.. +.-.+..|++|.++.|.--.+-. .+.+.|+....-+.. ...
T Consensus 51 ~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~----------~~t 120 (189)
T 2l8b_A 51 PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGM----------AFT 120 (189)
T ss_dssp CCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSC----------CCC
T ss_pred CceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCC----------CCC
Confidence 457788999999999995544 45568899999999985422210 011111111000000 013
Q ss_pred CccEEEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhCCCEEEEEe
Q psy8456 222 DIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAA 301 (353)
Q Consensus 222 ~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~g~~Vi~~g 301 (353)
.-++++||||..+ +-++...| .+.....|-.|+..+
T Consensus 121 p~s~lIVD~AekL-----------------------S~kE~~~L---------------------ld~A~~~naqvvll~ 156 (189)
T 2l8b_A 121 PGSTVIVDQGEKL-----------------------SLKETLTL---------------------LDGAARHNVQVLITD 156 (189)
T ss_dssp CCCEEEEEESSSH-----------------------HHHHHHHH---------------------HHHHHHTTCCEEEEE
T ss_pred CCCEEEEechhhc-----------------------CHHHHHHH---------------------HHHHHhcCCEEEEeC
Confidence 4568999999997 22333333 333336666776643
Q ss_pred ccccccCCCchhHHhhhhccc
Q psy8456 302 LDGTFQRTGFNDILSLIPLAE 322 (353)
Q Consensus 302 Ld~df~~~~F~~~~~L~~~ad 322 (353)
.. +|.+++...+++.-|-
T Consensus 157 --~~-~RqG~GnAl~vl~~ag 174 (189)
T 2l8b_A 157 --SG-QRTGTGSALMAMKDAG 174 (189)
T ss_dssp --SS-TTTCSHHHHHHHHHTT
T ss_pred --Cc-ccccCCCHHHHHHhCC
Confidence 33 8888888888887553
No 219
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.55 E-value=0.77 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=25.3
Q ss_pred CccEEEEccccChH-------HHHHHHHHHHhCCCEEEEEe
Q psy8456 72 DIDVIGIDEGQFFP-------DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 72 ~~dvV~IDEaQFF~-------dIv~l~~~l~~~G~~VivaG 105 (353)
++++++|||+|++. .+..+.+.+.+.|+.+++.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt 234 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 78999999999994 14444555567788888764
No 220
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.55 E-value=1.3 Score=41.66 Aligned_cols=23 Identities=13% Similarity=-0.063 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..+++||-|+|||+-...-++..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHHH
Confidence 46899999999997665555443
No 221
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.43 E-value=1.2 Score=40.72 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=30.5
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCE-EEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYR-CMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~-~~~~k~ 186 (353)
+..-++.|+.+|||||.+-.-...+...|.. +.+++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re 64 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE 64 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC
Confidence 4567889999999999988888888889988 666653
No 222
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.40 E-value=0.82 Score=41.61 Aligned_cols=38 Identities=21% Similarity=0.006 Sum_probs=31.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEE-Eee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMI-VRY 186 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~-~k~ 186 (353)
.+...++.|+++|||||..-.-...+.. .|.+|.+ .+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 3567788999999999998887788888 8988887 543
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.38 E-value=1.1 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.8
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-+++||.|+|||+ |++.+.+.
T Consensus 194 vlL~G~pG~GKT~-la~~la~~ 214 (854)
T 1qvr_A 194 PVLIGEPGVGKTA-IVEGLAQR 214 (854)
T ss_dssp CEEEECTTSCHHH-HHHHHHHH
T ss_pred eEEEcCCCCCHHH-HHHHHHHH
Confidence 5899999999997 45555444
No 224
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=83.32 E-value=1.6 Score=46.21 Aligned_cols=34 Identities=24% Similarity=0.131 Sum_probs=25.7
Q ss_pred eeeeccCCCCchhHHHHHHHHHH---HhCCEEEEEee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQ---YANYRCMIVRY 186 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~---~~~~~~~~~k~ 186 (353)
-++.-+||+|||-..+..+..+. ..+..++|+-|
T Consensus 258 ~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P 294 (800)
T 3mwy_W 258 GILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP 294 (800)
T ss_dssp EEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 46788899999988877776542 33567888888
No 225
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.28 E-value=1.3 Score=39.79 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=29.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCC-EEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANY-RCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~-~~~~~k~ 186 (353)
+..-++.|+.+|||||.+-.-...+...|. .|.+.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re 40 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE 40 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC
Confidence 445678999999999998888888888897 6665554
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.26 E-value=0.39 Score=39.77 Aligned_cols=16 Identities=31% Similarity=0.119 Sum_probs=13.5
Q ss_pred eeeeeccCCCCchhHH
Q psy8456 152 KEVILGPMFSGKTTEL 167 (353)
Q Consensus 152 I~vi~G~M~sGKt~~L 167 (353)
+.++.|+++|||||-.
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4578999999999854
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.19 E-value=0.58 Score=39.86 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=17.1
Q ss_pred ccceeeeeccCCCCchhHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRR 170 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~ 170 (353)
.+.+.+++||.||||||-+-.-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999854443
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.12 E-value=2.4 Score=41.24 Aligned_cols=121 Identities=11% Similarity=-0.011 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeee---cCChhhhc---c---cCCCccEEEEc
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVS---AVELNKLI---P---HTKDIDVIGID 79 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~---i~~l~ei~---~---~~~~~dvV~ID 79 (353)
.=+||||-+++.+..+...|.+|+.+...-..+ .....|.|...+... ..+..++. . ....+++|+||
T Consensus 70 pGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVID 146 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVD 146 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEeh
Confidence 458999999999999998999998875532111 112233443322211 22333332 1 13578999999
Q ss_pred cccCh-H--HH----------------HHH----HHHHHhCCCEEEEEecccccccCCch-----hHhhhh-ccccceEe
Q psy8456 80 EGQFF-P--DV----------------VSF----AESMANAGKIVVVAALDGTFQRTGFN-----DILSLI-PLAECVEK 130 (353)
Q Consensus 80 EaQFF-~--dI----------------v~l----~~~l~~~G~~VivaGLd~DFr~~pF~-----~~~~Ll-~lAD~I~k 130 (353)
.+|-+ + ++ .++ ...+.+.|++|++.+--.+=-+..|+ .-++.+ -+++-+..
T Consensus 147 Si~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~ 226 (356)
T 3hr8_A 147 SVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRME 226 (356)
T ss_dssp CTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEE
T ss_pred HhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEE
Confidence 99865 2 11 122 22333679999998765332233342 123334 35555555
Q ss_pred cc
Q psy8456 131 LT 132 (353)
Q Consensus 131 L~ 132 (353)
|.
T Consensus 227 l~ 228 (356)
T 3hr8_A 227 VR 228 (356)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.12 E-value=0.62 Score=39.14 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=17.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..-+++|+|+|||||-.-.-...+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356899999999998655544443
No 230
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.12 E-value=0.58 Score=44.06 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.7
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.+.+++|+.||||||-|-.-+ .. ..|+++.++.|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~-~~-~~~~~~aVi~~d~ 40 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL-NE-QHGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH-HS-CCCCCEEEECSSC
T ss_pred cEEEEEecCCCCHHHHHHHHH-hh-cCCCcEEEEEecC
Confidence 356899999999999764443 33 2688899888853
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.05 E-value=0.78 Score=42.54 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.5
Q ss_pred eeeeccCCCCchhHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+++||.|+||||-+-.-++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999986544444
No 232
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.05 E-value=0.61 Score=40.69 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=17.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-..++.|+|+|||||..-.-..++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 346889999999999755444443
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.99 E-value=1.2 Score=41.90 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=32.5
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+.+..++|+.|+||||-+..-+..+...|++|+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5667789999999999999999999889999998864
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.80 E-value=0.43 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=16.4
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++||-|+|||+-+-..++..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999997655444443
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.75 E-value=1 Score=46.20 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
.+.+..++|+.||||||-|-.-+..+...+.+|++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 366888999999999998887777777778888876
No 236
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=82.61 E-value=1.4 Score=39.61 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=40.9
Q ss_pred CCCCchHHHHHHHHHHHHHcCceEEEEeeccCCC---------CCCCceeeccC-Ccee-eeecCChhhhc----ccCCC
Q psy8456 8 DRINPYIVHFCRRIRRYQYANYRCMIVRYAKDDR---------YDTEKVATHDQ-QKLT-AVSAVELNKLI----PHTKD 72 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtR---------y~~~~I~Sr~G-~~~~-Ai~i~~l~ei~----~~~~~ 72 (353)
..-+|||...+..+... +.+++++-|...-- ++...+..-.| .... -+.+.+..-+. .....
T Consensus 116 ~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~~~~~~ 192 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNR 192 (237)
T ss_dssp SSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHHHhccc
Confidence 44589999988877653 78899999963211 11110211111 1111 12222222221 11246
Q ss_pred ccEEEEccccChH
Q psy8456 73 IDVIGIDEGQFFP 85 (353)
Q Consensus 73 ~dvV~IDEaQFF~ 85 (353)
+++|+|||+|.+.
T Consensus 193 ~~llIiDEaH~l~ 205 (237)
T 2fz4_A 193 FMLLIFDEVHHLP 205 (237)
T ss_dssp CSEEEEECSSCCC
T ss_pred CCEEEEECCccCC
Confidence 8999999999996
No 237
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=82.45 E-value=0.98 Score=45.72 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=31.5
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhC----CEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYAN----YRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~----~~~~~~k~~ 187 (353)
++..+|.|+.|||||+-|+.++......+ .+++++.++
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 45568999999999999999998886653 688888764
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.43 E-value=0.72 Score=39.58 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=17.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+.++.|++||||||-.-.-...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999654433433
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.41 E-value=0.42 Score=40.94 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=12.8
Q ss_pred eeeeccCCCCchhHH
Q psy8456 153 EVILGPMFSGKTTEL 167 (353)
Q Consensus 153 ~vi~G~M~sGKt~~L 167 (353)
-.|+|+|+|||||-+
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 478999999999854
No 240
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.21 E-value=1.4 Score=42.55 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=36.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.+++.++.|+.++||||-+++.+.+....|.+|++|....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3678999999999999999999999988999999998754
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.20 E-value=0.84 Score=39.26 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=26.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH------hCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY------ANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~------~~~~~~~~k~ 186 (353)
+++..++||.+|||||-+..-+..+.. .+..++.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 678899999999999988777665543 2445655543
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.17 E-value=0.52 Score=41.20 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=18.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+.+.+++||+||||||-+-.-+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 366788999999999986544433
No 243
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=82.05 E-value=3.2 Score=43.60 Aligned_cols=29 Identities=7% Similarity=-0.085 Sum_probs=23.4
Q ss_pred CCCchHHH-HHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVH-FCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSte-LLrr~~ry~~agkkvlv~Kp~ 37 (353)
.=||||+. ++..++.....|.+++++-|.
T Consensus 250 TGSGKTl~~ll~il~~l~~~~~~~lilaPT 279 (673)
T 2wv9_A 250 PGAGKTRRILPQIIKDAIQKRLRTAVLAPT 279 (673)
T ss_dssp TTTTTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEccH
Confidence 45999998 677777767788899999994
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.02 E-value=0.55 Score=40.18 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=17.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+++..++||++|||||- ++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL-lr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL-TRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHH
Confidence 356778999999999975 444444
No 245
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.86 E-value=1 Score=37.82 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=19.9
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHH
Q psy8456 145 TKRIGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 145 ~~Ri~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+..+..++.+|+||.+|||||- ++.+.-
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStl-l~ai~~ 48 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNI-GDAILF 48 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHH-HHHHHH
T ss_pred EEecCCCcEEEECCCCCCHHHH-HHHHHH
Confidence 3444456899999999999975 444443
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.86 E-value=0.24 Score=46.63 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=23.5
Q ss_pred ceeee--eccCCCCchhHHHHHHHHHHHh------CCEEEEEe
Q psy8456 151 EKEVI--LGPMFSGKTTELIRRIRRYQYA------NYRCMIVR 185 (353)
Q Consensus 151 eI~vi--~G~M~sGKt~~Li~~~~~~~~~------~~~~~~~k 185 (353)
..-++ +||.|+|||+-+-..++..... +..++.+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 35577 9999999998766666555443 44555444
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.85 E-value=1.1 Score=40.65 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQ 175 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~ 175 (353)
.+++..|+||.+|||||-++.-+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467889999999999999988887554
No 248
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.74 E-value=0.87 Score=38.29 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=16.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+-++.|+++|||||-.-.-..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999954443333
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.71 E-value=0.56 Score=40.77 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++..++||.||||||-+ +.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl-~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVV-RCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHh
Confidence 3668889999999999854 44443
No 250
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.64 E-value=1.4 Score=43.72 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=35.8
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.+++.+|.|+.++||||-+++.+.+....|.+|++|....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3678999999999999999999999988899999998764
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.57 E-value=0.64 Score=39.79 Aligned_cols=120 Identities=8% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceee---ccCCc--------eeeee-----------cC--Chh
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVAT---HDQQK--------LTAVS-----------AV--ELN 64 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~S---r~G~~--------~~Ai~-----------i~--~l~ 64 (353)
.=+||||-+...+......+.+|+++....... .+.. +.|.. +..+. .. +..
T Consensus 32 ~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD----SIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPE 107 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH----HHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBCSSCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH----HHHHHHHHhcchHHHHhhCCEEEEeccccccCceeeecCCCHH
Confidence 458999999888878777788888876433210 0000 01100 00000 00 222
Q ss_pred hhc----c--cCCCcc--EEEEccccCh---H-----HHHHHHHHH-HhCCCEEEEEecccccccCCchhHhhhhccccc
Q psy8456 65 KLI----P--HTKDID--VIGIDEGQFF---P-----DVVSFAESM-ANAGKIVVVAALDGTFQRTGFNDILSLIPLAEC 127 (353)
Q Consensus 65 ei~----~--~~~~~d--vV~IDEaQFF---~-----dIv~l~~~l-~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~ 127 (353)
++. . ...+++ +|++||.+.+ + ++.+....+ .+.|+.|++..=+.+....... ..+..+||.
T Consensus 108 ~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~--~~~~~~~d~ 185 (235)
T 2w0m_A 108 ELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFG--FGVEHVADG 185 (235)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-------------CHHHHCSE
T ss_pred HHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc--cchheeeeE
Confidence 221 1 124688 9999999954 2 344444444 3579999988766533222222 345567788
Q ss_pred eEeccce
Q psy8456 128 VEKLTAV 134 (353)
Q Consensus 128 I~kL~Av 134 (353)
|..|...
T Consensus 186 vi~l~~~ 192 (235)
T 2w0m_A 186 IIRFRRM 192 (235)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8777543
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.33 E-value=1.7 Score=37.64 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=20.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANY 179 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~ 179 (353)
+.+..|+||.+|||||-+-.-...+...|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~ 51 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGL 51 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 567789999999999965444444444343
No 253
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=81.24 E-value=0.9 Score=40.48 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=18.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..+.+++||+||||||-+-.-..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999765544443
No 254
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.10 E-value=5.5 Score=37.69 Aligned_cols=30 Identities=3% Similarity=-0.287 Sum_probs=22.9
Q ss_pred CCCCchHHHHHHHHHHHHHcCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~~agkkvlv~Kp~ 37 (353)
..-+|||.-.+-.+......|.+++++-|.
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt 73 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPT 73 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 345899996666655555678999999995
No 255
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.07 E-value=0.78 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=16.6
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-++.|+++|||||..-.-...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999765554444
No 256
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.01 E-value=1.1 Score=39.54 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=16.4
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-++.|+++|||||..-.-..++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999655544444
No 257
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.97 E-value=0.54 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=16.7
Q ss_pred cceeeeeccCCCCchhHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~ 171 (353)
+.+..|+|||||||||-+-.-.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999998654433
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=80.93 E-value=0.82 Score=39.47 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=16.0
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-+++||++|||||-.-.-..++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998654443443
No 259
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.93 E-value=1.4 Score=39.94 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=20.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
..--+++||.|+|||+-+ +.+.+ ..+...+-+.
T Consensus 54 ~~~vll~Gp~GtGKT~la-~~la~--~~~~~~~~i~ 86 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA-RAVAT--ECSATFLNIS 86 (297)
T ss_dssp CSEEEEESSSSSCHHHHH-HHHHH--HTTCEEEEEE
T ss_pred CCeEEEECcCCCCHHHHH-HHHHH--HhCCCeEEee
Confidence 445689999999999654 44433 2344444333
No 260
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.93 E-value=1.1 Score=39.18 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.-++.|+|+|||||..-.-..++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999755444444
No 261
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=80.70 E-value=1.8 Score=47.93 Aligned_cols=38 Identities=24% Similarity=0.077 Sum_probs=27.8
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHh--CCEEEEEeeecC
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYA--NYRCMIVRYAKD 189 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~--~~~~~~~k~~~D 189 (353)
.-++..++|||||.-.+..++..... ..+|+++.|..+
T Consensus 302 ~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKD 341 (1038)
T ss_dssp SEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGG
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHH
Confidence 34889999999999877666444322 368999998644
No 262
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.64 E-value=0.64 Score=39.71 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=16.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+..++||.||||||- ++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl-~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL-LKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHH-HHHHHh
Confidence 4567999999999984 444443
No 263
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=80.63 E-value=1.5 Score=43.32 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=34.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEeeec
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRYAK 188 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~~~ 188 (353)
.+++.++.|+.++||||-+++.+.+... .|.+|+++....
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3678899999999999999999998876 588999987654
No 264
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=80.61 E-value=0.86 Score=38.15 Aligned_cols=22 Identities=32% Similarity=0.238 Sum_probs=15.8
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..++.|+|+|||||-.-.-..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999854443333
No 265
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.47 E-value=1 Score=40.69 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..+-+++||.+|||||.--+-+.+|
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999876666665
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.40 E-value=0.55 Score=39.80 Aligned_cols=16 Identities=38% Similarity=0.221 Sum_probs=13.3
Q ss_pred eeeeeccCCCCchhHH
Q psy8456 152 KEVILGPMFSGKTTEL 167 (353)
Q Consensus 152 I~vi~G~M~sGKt~~L 167 (353)
+..|+|+|+|||||-.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4578999999999853
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.39 E-value=1.5 Score=44.17 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=36.3
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee-cCCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEEEe
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA-KDDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIGID 229 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~-~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ID 229 (353)
-+++||.|+|||+ |.+.+.+ ..+..++.+... +-..+. |. ....+..++. ......+++||
T Consensus 241 vLL~GppGtGKT~-lAraia~--~~~~~fv~vn~~~l~~~~~--------g~-----~~~~~~~~f~~A~~~~p~iLfLD 304 (489)
T 3hu3_A 241 ILLYGPPGTGKTL-IARAVAN--ETGAFFFLINGPEIMSKLA--------GE-----SESNLRKAFEEAEKNAPAIIFID 304 (489)
T ss_dssp EEEECSTTSSHHH-HHHHHHH--HCSSEEEEEEHHHHHTSCT--------TH-----HHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEECcCCCCHHH-HHHHHHH--HhCCCEEEEEchHhhhhhc--------ch-----hHHHHHHHHHHHHhcCCcEEEec
Confidence 5899999999986 5566643 346665554421 111110 11 0111222221 12446799999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|++.+
T Consensus 305 EId~l 309 (489)
T 3hu3_A 305 ELDAI 309 (489)
T ss_dssp SHHHH
T ss_pred chhhh
Confidence 99985
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.33 E-value=1.2 Score=45.17 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+....++||.||||||-| +.+-.+.....+++.+
T Consensus 260 g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEE
Confidence 445789999999999876 4444443334444433
No 269
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=80.30 E-value=0.91 Score=38.77 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=15.5
Q ss_pred ceeeeeccCCCCchhHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRR 170 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~ 170 (353)
.+-++.|+++|||||-.-+-
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35688999999999865433
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.19 E-value=1 Score=38.02 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+.++.|+++|||||-.-.-..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999864443333
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.12 E-value=0.67 Score=41.93 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=18.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..|+||.||||||- ++.+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL-l~~l~ 52 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM-LNIIG 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHT
T ss_pred CCCEEEEECCCCCcHHHH-HHHHh
Confidence 467888999999999984 55544
No 272
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.01 E-value=1 Score=42.28 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHh------CCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYA------NYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~------~~~~~~~k~~~ 188 (353)
+.+.+|+||.+||||+-+++.+.+.+.. +.+|+++....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5688999999999999999988876554 77888876543
No 273
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.01 E-value=3.4 Score=41.48 Aligned_cols=31 Identities=6% Similarity=-0.184 Sum_probs=24.8
Q ss_pred cCCCCchHHHHHHHHHHHHH---------cCceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRYQY---------ANYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~---------agkkvlv~Kp~ 37 (353)
+..-+|||...+..+.++.. .+++++++-|.
T Consensus 205 ~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~ 244 (590)
T 3h1t_A 205 MATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADR 244 (590)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-
T ss_pred ecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCC
Confidence 34569999999998888876 45899999994
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.93 E-value=0.92 Score=45.01 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=36.6
Q ss_pred hhhhccccceEeccceeccccccccc-c-cccccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 119 LSLIPLAECVEKLTAVCMSCFRDAAF-T-KRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 119 ~~Ll~lAD~I~kL~AvC~~CG~~A~f-~-~Ri~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.++++-...+..|..+...=+....+ . ....+++.+++||.||||||-|--.+........++++.-
T Consensus 134 iR~~~~~~~~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 134 MRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp ECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred EEecccccCCCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 35555443455555554311111111 1 1234678899999999999977665554433344555543
No 275
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.90 E-value=1.3 Score=45.76 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=32.3
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~~~ 188 (353)
+...+|.||.|+|||+-+...+..+.. .+.++++..|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 457899999999999999888877755 678999887753
No 276
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.85 E-value=1.3 Score=39.44 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=14.8
Q ss_pred eeeeccCCCCchhHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~ 173 (353)
-+++||.|+|||+- ++.+.+
T Consensus 47 vll~G~~GtGKT~l-a~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLL-AKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHH-HHHHHH
T ss_pred EEEECCCCCcHHHH-HHHHHH
Confidence 57999999999864 444433
No 277
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=79.81 E-value=3.1 Score=37.54 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=64.8
Q ss_pred CchHHHHHH-HHHHHHHcCceEEEEeeccCCCCC-------CCceeeccCCceeeeecCChhhhcccCCCccEEEEcccc
Q psy8456 11 NPYIVHFCR-RIRRYQYANYRCMIVRYAKDDRYD-------TEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQ 82 (353)
Q Consensus 11 ~GKSteLLr-r~~ry~~agkkvlv~Kp~iDtRy~-------~~~I~Sr~G~~~~Ai~i~~l~ei~~~~~~~dvV~IDEaQ 82 (353)
++|+++.+. .+.-.+.+|++|.++.|.--.+-. .+.+.++....-+.. ....-++++||||.
T Consensus 62 s~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~----------~~tp~s~lIVD~Ae 131 (189)
T 2l8b_A 62 AAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGM----------AFTPGSTVIVDQGE 131 (189)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSC----------CCCCCCEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCC----------CCCCCCEEEEechh
Confidence 578888444 356777999999999994321110 011222111110000 01234589999999
Q ss_pred ChH--HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccc
Q psy8456 83 FFP--DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLA 125 (353)
Q Consensus 83 FF~--dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lA 125 (353)
.++ +...|.+.+...|-.|+..+= -++..++....+|.-|
T Consensus 132 kLS~kE~~~Lld~A~~~naqvvll~~---~~RqG~GnAl~vl~~a 173 (189)
T 2l8b_A 132 KLSLKETLTLLDGAARHNVQVLITDS---GQRTGTGSALMAMKDA 173 (189)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEES---STTTCSHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHhcCCEEEEeCC---cccccCCCHHHHHHhC
Confidence 997 899999999999999888653 2667777666666543
No 278
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.58 E-value=1.2 Score=40.33 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=22.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k 185 (353)
..-+++||.|+|||+ |.+.+.+... .+..++.+.
T Consensus 48 ~~~ll~G~~GtGKt~-la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTE-LAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHH-HHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHH-HHHHHHHHHcCCCcceEEee
Confidence 356899999999985 5555555543 344455444
No 279
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.56 E-value=1.6 Score=36.87 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=50.3
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeeecCC--hhhhc-ccCCCccEEEEccccChHH
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVE--LNKLI-PHTKDIDVIGIDEGQFFPD 86 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~i~~--l~ei~-~~~~~~dvV~IDEaQFF~d 86 (353)
-.||||-...-+..+...|++|+++.- |...+...........++.++... +.+++ ....+||+|+||=.-.+..
T Consensus 12 G~GKTt~a~~la~~la~~g~~vlliD~--D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~~~~~~~ 89 (206)
T 4dzz_A 12 GSGKTTAVINIATALSRSGYNIAVVDT--DPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAGSLSV 89 (206)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEEC--CTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEECCSSSSH
T ss_pred CccHHHHHHHHHHHHHHCCCeEEEEEC--CCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 379999999999999999999999976 433221111111111122232221 22222 1235688999887766642
Q ss_pred HHHHHHHHHhCCCEEEEEec
Q psy8456 87 VVSFAESMANAGKIVVVAAL 106 (353)
Q Consensus 87 Iv~l~~~l~~~G~~VivaGL 106 (353)
... ..+...+..+++...
T Consensus 90 ~~~--~~l~~ad~viiv~~~ 107 (206)
T 4dzz_A 90 ITS--AAVMVSDLVIIPVTP 107 (206)
T ss_dssp HHH--HHHHHCSEEEEEECS
T ss_pred HHH--HHHHHCCEEEEEecC
Confidence 211 122234445555544
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.52 E-value=0.63 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.116 Sum_probs=13.0
Q ss_pred cceeeeeccCCCCchhHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRR 170 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~ 170 (353)
+.+..++||.||||||-+-.-
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp CCEEEEECSCC----CHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 567889999999999865443
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=79.41 E-value=1.1 Score=37.29 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=14.6
Q ss_pred eeeeeccCCCCchhHHHH
Q psy8456 152 KEVILGPMFSGKTTELIR 169 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~ 169 (353)
+-++.|+++|||||-.-+
T Consensus 5 ~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999996543
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=79.40 E-value=0.71 Score=41.38 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=17.9
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..++||.||||||- ++.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL-l~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL-LYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHh
Confidence 467888999999999985 44443
No 283
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.32 E-value=1.2 Score=37.26 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=19.2
Q ss_pred cccceeeeeccCCCCchhHHHHHHHH
Q psy8456 148 IGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 148 i~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+..++.+|+||.+|||||- +..+.-
T Consensus 21 f~~g~~~I~G~NGsGKSti-l~Ai~~ 45 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSL-LDAILV 45 (149)
T ss_dssp CCSEEEEEECCTTSSHHHH-HHHHHH
T ss_pred cCCCeEEEECCCCCCHHHH-HHHHHH
Confidence 3467899999999999975 555543
No 284
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=79.32 E-value=1.1 Score=37.24 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=14.4
Q ss_pred eeeeeccCCCCchhHHHH
Q psy8456 152 KEVILGPMFSGKTTELIR 169 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~ 169 (353)
+-++.|+++|||||-.-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 568899999999995433
No 285
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.30 E-value=0.97 Score=39.99 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=18.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..-++.|+|+|||||..-.-..++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346889999999999765555554
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.29 E-value=0.75 Score=40.38 Aligned_cols=22 Identities=36% Similarity=0.282 Sum_probs=16.4
Q ss_pred ceeeeeccCCCCchhHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~ 172 (353)
..-++.|++||||||-.-+-..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999996544433
No 287
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.14 E-value=2.4 Score=38.90 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.4
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++||.|+||||-+-..++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999997655444443
No 288
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.07 E-value=1.1 Score=38.06 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=28.2
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh------CCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA------NYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~------~~~~~~~k~~~ 188 (353)
..-++.+|+|||||.-.+..+...... +.+++++-|..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 92 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKV 92 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHH
Confidence 346889999999999877766654322 67889888863
No 289
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.07 E-value=1.8 Score=40.56 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=32.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.++...++|+.||||||-+..-+..+...|.+|+++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46677788999999999999988888888999998764
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.04 E-value=0.88 Score=40.34 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=21.5
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
+....+.|+.||||||- ++.+..+ +..+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl-~~~L~~~---~g~v~~~ 50 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTY-LNHFEKY---KNDICLL 50 (230)
T ss_dssp CEEEEEECSTTSCHHHH-HHTTGGG---TTTEEEE
T ss_pred ceEEEEECCCCCCHHHH-HHHHHhc---cCCeEEE
Confidence 56778999999999994 4544444 4445544
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.94 E-value=6.5 Score=38.11 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=18.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+.+|.||++|||||-..+-+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 56899999999999766655544
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.86 E-value=1.2 Score=38.20 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=17.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-+.++.|+++|||||-.-.-...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999644433333
No 293
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.86 E-value=0.78 Score=41.20 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=18.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++.+++||.||||||- ++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTL-lk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSL-IQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHhc
Confidence 577889999999999985 444443
No 294
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=78.81 E-value=1.2 Score=42.43 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=44.7
Q ss_pred CCchhHhhhhccccceEeccceeccccccccccccc-ccceeeeeccCCCCchhHHHHHHHHHHH------hCCEEEEEe
Q psy8456 113 TGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRI-GQEKEVILGPMFSGKTTELIRRIRRYQY------ANYRCMIVR 185 (353)
Q Consensus 113 ~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~~~------~~~~~~~~k 185 (353)
..|.....++....++..+++-|..= +....--+ .+++.+++||.+||||+-+++.+.+.+. .+.+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~i~TG~~~L--D~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 86 PGFLTAFEYSEKRKMVFHITTGSQEF--DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CCSEEHHHHHHHGGGCCCBCCSCHHH--HHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred cCCCcHHHHHhhhcccceeecCChhH--HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44666555554434444444433210 11110001 3568899999999999999998887654 477888776
Q ss_pred eec
Q psy8456 186 YAK 188 (353)
Q Consensus 186 ~~~ 188 (353)
...
T Consensus 164 ~E~ 166 (343)
T 1v5w_A 164 TEN 166 (343)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 295
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=78.66 E-value=1.4 Score=42.05 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee-cCCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA-KDDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIGI 228 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~-~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~I 228 (353)
--+++||.|+|||+- .+.+.+. .+..++.+... +-..| .|. ....+..++. ......+|+|
T Consensus 86 ~iLL~GppGtGKT~l-a~ala~~--~~~~~~~v~~~~l~~~~--------~g~-----~~~~~~~~f~~a~~~~~~vl~i 149 (355)
T 2qp9_X 86 GILLYGPPGTGKSYL-AKAVATE--ANSTFFSVSSSDLVSKW--------MGE-----SEKLVKQLFAMARENKPSIIFI 149 (355)
T ss_dssp CEEEECSTTSCHHHH-HHHHHHH--HTCEEEEEEHHHHHSCC----------------CHHHHHHHHHHHHHTSSEEEEE
T ss_pred eEEEECCCCCcHHHH-HHHHHHH--hCCCEEEeeHHHHhhhh--------cch-----HHHHHHHHHHHHHHcCCeEEEE
Confidence 458899999999964 4444433 35555544432 10111 011 1111222221 1245789999
Q ss_pred eccccc
Q psy8456 229 DEGQFV 234 (353)
Q Consensus 229 DE~QF~ 234 (353)
||++.+
T Consensus 150 DEid~l 155 (355)
T 2qp9_X 150 DQVDAL 155 (355)
T ss_dssp ECGGGG
T ss_pred echHhh
Confidence 999975
No 296
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.65 E-value=1.1 Score=41.70 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=37.3
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec-CCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK-DDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIG 227 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~-D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ 227 (353)
.--+++||.|+|||+ |.+.+.+ ..+..++.+.... -..| .|. ....+..+.. ......+|+
T Consensus 52 ~~vLl~GppGtGKT~-la~aia~--~~~~~~~~v~~~~l~~~~--------~g~-----~~~~~~~~f~~a~~~~~~vl~ 115 (322)
T 3eie_A 52 SGILLYGPPGTGKSY-LAKAVAT--EANSTFFSVSSSDLVSKW--------MGE-----SEKLVKQLFAMARENKPSIIF 115 (322)
T ss_dssp CEEEEECSSSSCHHH-HHHHHHH--HHTCEEEEEEHHHHHTTT--------GGG-----HHHHHHHHHHHHHHTSSEEEE
T ss_pred CeEEEECCCCCcHHH-HHHHHHH--HHCCCEEEEchHHHhhcc--------cch-----HHHHHHHHHHHHHhcCCeEEE
Confidence 346899999999995 4555544 3466666554321 0111 011 0111222221 134568999
Q ss_pred Eeccccc
Q psy8456 228 IDEGQFV 234 (353)
Q Consensus 228 IDE~QF~ 234 (353)
|||++.+
T Consensus 116 iDEid~l 122 (322)
T 3eie_A 116 IDQVDAL 122 (322)
T ss_dssp EECGGGG
T ss_pred echhhhh
Confidence 9999975
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=78.58 E-value=1.5 Score=38.53 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhC
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYAN 178 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~ 178 (353)
+...++||.+|||||-|-.-+..+..+|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 4567999999999998777666666555
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.50 E-value=1.2 Score=38.51 Aligned_cols=21 Identities=29% Similarity=0.104 Sum_probs=15.6
Q ss_pred eeeeeccCCCCchhHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~ 172 (353)
...++||+||||||-+-.-..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999986544333
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.44 E-value=0.85 Score=39.45 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=15.3
Q ss_pred eeeeccCCCCchhHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~ 173 (353)
-+++||++|||||-.-.-..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999865443333
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.30 E-value=1.3 Score=36.66 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=14.3
Q ss_pred ceeeeeccCCCCchhHHH
Q psy8456 151 EKEVILGPMFSGKTTELI 168 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li 168 (353)
..-++.|+|+|||||-.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 355789999999998543
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=78.28 E-value=0.81 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.9
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++..++||.||||||-+-.-+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36788999999999998554433333
No 302
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.21 E-value=1.8 Score=38.39 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=41.7
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec--CCCCCCCceeeccCcc---cceeec-ccHhhhccc-CCCccE
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK--DDRYDTEKVSTHDQQK---LTAVSA-VELNKLIPH-TKDIDV 225 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~--D~R~~~~~i~s~~g~~---~~a~~~-~~~~~~~~~-~~~~~~ 225 (353)
.+|+|+-+||||+.-.+.+.. |.+++.+..+. |. .-...|.-|.... ...+.. .++.+.+.. ....++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~-e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~~~~~~~~~ 76 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDD-EMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAPDDA 76 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC-------CHHHHHHHTSCTTEEEECCSSCGGGTSCTTSCTTCE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCH-HHHHHHHHHHhcCCCCcEEEEcHhhHHHHHHhhcccCCe
Confidence 589999999999887776543 55665554433 11 1112344443221 111111 245555433 234579
Q ss_pred EEEeccccc
Q psy8456 226 IGIDEGQFV 234 (353)
Q Consensus 226 i~IDE~QF~ 234 (353)
|+||=...+
T Consensus 77 VLvDclt~w 85 (180)
T 1c9k_A 77 ILLECITTM 85 (180)
T ss_dssp EEEECHHHH
T ss_pred EEEcCHHHH
Confidence 999988753
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.14 E-value=0.95 Score=40.35 Aligned_cols=24 Identities=29% Similarity=0.072 Sum_probs=18.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++..++||.||||||-| +.+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl-~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLA-MAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3678889999999999854 44433
No 304
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.11 E-value=1.7 Score=39.09 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=36.1
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhccc--CCCccEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPH--TKDIDVIGID 229 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~--~~~~~~i~ID 229 (353)
--+++||.|+|||+- .+.+.+. .+..++.+... +.-. |... ......+.+++.. .....+++||
T Consensus 66 ~vLl~G~~GtGKT~l-a~~ia~~--~~~~~~~i~~~-~~~~---------g~~~-~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 66 SVLLEGPPHSGKTAL-AAKIAEE--SNFPFIKICSP-DKMI---------GFSE-TAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHH--HTCSEEEEECG-GGCT---------TCCH-HHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred EEEEECCCCCcHHHH-HHHHHHH--hCCCEEEEeCH-HHhc---------CCch-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 458999999999864 4444443 45555544322 1111 1000 0001122223221 3457899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|++.+
T Consensus 132 Eid~l 136 (272)
T 1d2n_A 132 DIERL 136 (272)
T ss_dssp CHHHH
T ss_pred Chhhh
Confidence 99974
No 305
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.99 E-value=1.2 Score=40.92 Aligned_cols=23 Identities=35% Similarity=0.186 Sum_probs=17.9
Q ss_pred cceeeeeccCCCCchhHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+...+++|+|+|||||-+-.-..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999986544433
No 306
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.98 E-value=2.1 Score=42.14 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=34.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~~~ 188 (353)
+++.+|.|+.++|||+-+++.+.+... .|.+|++|....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 578899999999999999999999876 488999987754
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.81 E-value=1.1 Score=41.55 Aligned_cols=21 Identities=24% Similarity=0.012 Sum_probs=16.4
Q ss_pred cceeeeeccCCCCchhHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRR 170 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~ 170 (353)
+.+.+++||+||||||-.-+-
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457889999999999854443
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.69 E-value=0.9 Score=39.06 Aligned_cols=18 Identities=39% Similarity=0.115 Sum_probs=14.9
Q ss_pred cceeeeeccCCCCchhHH
Q psy8456 150 QEKEVILGPMFSGKTTEL 167 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~L 167 (353)
+.+..|+||.+|||||-+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 456779999999999854
No 309
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.67 E-value=0.86 Score=40.94 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=17.6
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||- ++.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTL-lk~l 55 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL-LKTI 55 (214)
T ss_dssp TTCCEEEECCTTSSHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHH
Confidence 467889999999999985 4444
No 310
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=77.67 E-value=1.2 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=14.1
Q ss_pred eeeeccCCCCchhHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRR 170 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~ 170 (353)
-++.|+++|||||-.-.-
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEESCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478999999999864433
No 311
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.57 E-value=1.3 Score=38.43 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=17.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+...+++||.||||||-+-.-...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567899999999998654443433
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=77.55 E-value=0.98 Score=37.63 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=11.1
Q ss_pred ceeeeeccCCCCchhHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~ 169 (353)
.+-++.|+|+|||||-.-.
T Consensus 6 ~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CEEEEECCC----CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3568999999999986443
No 313
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=77.46 E-value=3.7 Score=36.94 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=20.2
Q ss_pred CCCCchHHHHHHHHHHHHHcCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~~agkkvlv~Kp~ 37 (353)
..-+|||.-.+.-+.. .+.+++++-|.
T Consensus 39 ~TGsGKT~~~~~~~~~---~~~~~liv~P~ 65 (337)
T 2z0m_A 39 KTGSGKTAAYAIPILE---LGMKSLVVTPT 65 (337)
T ss_dssp CTTSSHHHHHHHHHHH---HTCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHh---hcCCEEEEeCC
Confidence 4568999877665543 38899999995
No 314
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.38 E-value=0.91 Score=41.11 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..++||.||||||- ++.+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL-l~~l~ 53 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT-LSAIA 53 (240)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHh
Confidence 467888999999999985 44443
No 315
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=77.25 E-value=1.4 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.078 Sum_probs=15.4
Q ss_pred eeeeeccCCCCchhHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~ 172 (353)
+.++.|+++|||||-.-.-..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 457899999999986444333
No 316
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=77.13 E-value=6.9 Score=33.07 Aligned_cols=91 Identities=10% Similarity=-0.032 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceecccccccccccccccceeeeeccCCCCchh
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMFSGKTT 165 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~geI~vi~G~M~sGKt~ 165 (353)
++.++++.+.+.+ .|+++|.-..+-- + ..++.+..++.-.|...+.. .....+...++++-.+||.|.
T Consensus 26 ~i~~~~~~i~~a~-~I~i~G~G~S~~~------A--~~~~~~l~~~g~~~~~~~~~---~~~~~~~~d~vI~iS~sG~t~ 93 (186)
T 1m3s_A 26 EADQLADHILSSH-QIFTAGAGRSGLM------A--KSFAMRLMHMGFNAHIVGEI---LTPPLAEGDLVIIGSGSGETK 93 (186)
T ss_dssp HHHHHHHHHHHCS-CEEEECSHHHHHH------H--HHHHHHHHHTTCCEEETTST---TCCCCCTTCEEEEECSSSCCH
T ss_pred HHHHHHHHHHcCC-eEEEEecCHHHHH------H--HHHHHHHHhcCCeEEEeCcc---cccCCCCCCEEEEEcCCCCcH
Confidence 5667777777654 7888988443210 0 01111222222122211111 112223345777778899999
Q ss_pred HHHHHHHHHHHhCCEEEEEeeec
Q psy8456 166 ELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 166 ~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++++.++..+.+|-+++.++...
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 99999999999999999887643
No 317
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.13 E-value=2 Score=45.96 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~~~ 188 (353)
+...+|.||.|+|||+-+...+..... .+.++++..|+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 457899999999999999888877654 688999888764
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.11 E-value=1.1 Score=40.49 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=16.8
Q ss_pred cceeeeeccCCCCchhHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+.+.+++|+|||||||-.-.-..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999985444333
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=77.09 E-value=0.93 Score=41.46 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=17.5
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||-| +.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl-k~l 53 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI-NVI 53 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHH
Confidence 4678889999999999854 443
No 320
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=77.04 E-value=5.6 Score=36.63 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCC--CCC-------CCc----eeeccCCceeeeecCChhhhcccCCCccEE
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDD--RYD-------TEK----VATHDQQKLTAVSAVELNKLIPHTKDIDVI 76 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDt--Ry~-------~~~----I~Sr~G~~~~Ai~i~~l~ei~~~~~~~dvV 76 (353)
-.||||-.+..++....+|++|+++-- |+ |.. ... +.+..|... .-.++..+.. .++|+|
T Consensus 16 GvGKTt~a~~la~~l~~~G~~V~v~d~--D~q~~~~~~al~~gl~~~~~~~~~~~~~~~---~e~~l~~~L~--~~pdlv 88 (228)
T 2r8r_A 16 GVGKTYAMLQAAHAQLRQGVRVMAGVV--ETHGRAETEALLNGLPQQPLLRTEYRGMTL---EEMDLDALLK--AAPSLV 88 (228)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEEC--CCTTCHHHHHHHTTSCBCCCEEEEETTEEE---EECCHHHHHH--HCCSEE
T ss_pred CCcHHHHHHHHHHHHHHCCCCEEEEEe--CCCCChhHHHHhcCccccCcceeecCCccc---ccccHHHHHh--cCCCEE
Confidence 379999999999999999999987754 33 210 000 011111110 1123333221 469999
Q ss_pred EEccccCh--H-----HHHHHHHHHHhCCCEEEEE
Q psy8456 77 GIDEGQFF--P-----DVVSFAESMANAGKIVVVA 104 (353)
Q Consensus 77 ~IDEaQFF--~-----dIv~l~~~l~~~G~~Viva 104 (353)
+|||.=.. + ...+.+..+...|+.|+..
T Consensus 89 IVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT 123 (228)
T 2r8r_A 89 LVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTT 123 (228)
T ss_dssp EESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEE
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEE
Confidence 99995432 1 2444445577899999854
No 321
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=76.92 E-value=3.2 Score=43.86 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=20.1
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~ 37 (353)
.=||||+.++..+. .+|.+++++-|.
T Consensus 241 TGSGKT~a~~l~ll---~~g~~vLVl~PT 266 (666)
T 3o8b_A 241 TGSGKSTKVPAAYA---AQGYKVLVLNPS 266 (666)
T ss_dssp TTSCTTTHHHHHHH---HTTCCEEEEESC
T ss_pred CchhHHHHHHHHHH---HCCCeEEEEcch
Confidence 45899998886554 367899999994
No 322
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.76 E-value=0.97 Score=40.91 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.3
Q ss_pred ccceeeeeccCCCCchhHH
Q psy8456 149 GQEKEVILGPMFSGKTTEL 167 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~L 167 (353)
.|++..|+||.||||||-|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999854
No 323
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.72 E-value=0.96 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..|+||.||||||- ++.+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL-l~~l~ 55 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL-FQNFN 55 (275)
T ss_dssp TTSEEEEECCTTSSHHHH-HHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHH
Confidence 467889999999999984 44443
No 324
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=76.68 E-value=2 Score=44.11 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=21.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
++..++.+|.|||||.-.+--+ ...+..++++.|.
T Consensus 59 g~d~lv~~pTGsGKTl~~~lpa---l~~~g~~lVisP~ 93 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCYQLPA---LCSDGFTLVICPL 93 (591)
T ss_dssp TCCEEEECCTTSCTTHHHHHHH---HTSSSEEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHH---HHcCCcEEEEeCH
Confidence 3456889999999997422111 1124567777664
No 325
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.58 E-value=2.1 Score=42.25 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=35.6
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceee-ccCcccceeecccHhhhcc--cCCCccEEE
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVST-HDQQKLTAVSAVELNKLIP--HTKDIDVIG 227 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s-~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ 227 (353)
.--+++||.|+|||+- .+.+.+.. .+..++.+.... +.+ ..|. ....+..++. ....+.+|+
T Consensus 168 ~~vLL~GppGtGKT~l-A~aia~~~-~~~~~~~v~~~~--------l~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~ 232 (444)
T 2zan_A 168 RGILLFGPPGTGKSYL-AKAVATEA-NNSTFFSISSSD--------LVSKWLGE-----SEKLVKNLFQLARENKPSIIF 232 (444)
T ss_dssp SEEEEECSTTSSHHHH-HHHHHHHC-CSSEEEEECCC----------------------CCCTHHHHHHHHHHSCSEEEE
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHc-CCCCEEEEeHHH--------HHhhhcch-----HHHHHHHHHHHHHHcCCeEEE
Confidence 4568999999999954 44444432 245554443321 111 0111 1112223322 134678999
Q ss_pred Eeccccc
Q psy8456 228 IDEGQFV 234 (353)
Q Consensus 228 IDE~QF~ 234 (353)
|||++.+
T Consensus 233 iDEid~l 239 (444)
T 2zan_A 233 IDEIDSL 239 (444)
T ss_dssp ESCTTTT
T ss_pred EechHhh
Confidence 9999975
No 326
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.42 E-value=1 Score=41.53 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=17.5
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||- ++.+
T Consensus 31 ~Ge~~~liG~nGsGKSTL-lk~l 52 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF-LRCI 52 (262)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHH
Confidence 467888999999999985 4444
No 327
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.42 E-value=1.9 Score=43.32 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=29.5
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
++..++||.+|||||-+..-+......|.+++.+.+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 467899999999999988888777667888776654
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.29 E-value=0.87 Score=40.09 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.1
Q ss_pred eeeeeccCCCCchhHH
Q psy8456 152 KEVILGPMFSGKTTEL 167 (353)
Q Consensus 152 I~vi~G~M~sGKt~~L 167 (353)
+-.++|+|+|||||-.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4468999999999854
No 329
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=76.22 E-value=6.7 Score=40.60 Aligned_cols=28 Identities=4% Similarity=-0.142 Sum_probs=20.4
Q ss_pred CCchHHHHHHHH-HHHHHcCceEEEEeec
Q psy8456 10 INPYIVHFCRRI-RRYQYANYRCMIVRYA 37 (353)
Q Consensus 10 ~~GKSteLLrr~-~ry~~agkkvlv~Kp~ 37 (353)
-||||+....-+ +.....|.+++++-|.
T Consensus 49 GsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 49 ASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp GGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred ccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 489998874444 4444468999999995
No 330
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.12 E-value=1.5 Score=39.01 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=17.9
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-+++||.+|||+|.--+-+..|
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999876666665
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.12 E-value=1 Score=40.44 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=17.6
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||-| +.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl-~~l 54 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL-MMI 54 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHH
Confidence 4678889999999999854 444
No 332
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.10 E-value=5 Score=38.94 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeee---cCChhhhc---c---cCCCccEEEEcc
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVS---AVELNKLI---P---HTKDIDVIGIDE 80 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~---i~~l~ei~---~---~~~~~dvV~IDE 80 (353)
-+|||+-.++.+.+....|.+|++|....... .....+.|...+-+. ..+..++. . ...++++|+||.
T Consensus 84 GsGKTtlal~la~~~~~~g~~vlyi~~E~s~~---~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDs 160 (366)
T 1xp8_A 84 SGGKTTLALAIVAQAQKAGGTCAFIDAEHALD---PVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDS 160 (366)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred CCChHHHHHHHHHHHHHCCCeEEEEECCCChh---HHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 48999999999999988899999998753211 112233343222111 12333322 1 235799999999
Q ss_pred ccCh
Q psy8456 81 GQFF 84 (353)
Q Consensus 81 aQFF 84 (353)
.|.+
T Consensus 161 l~~l 164 (366)
T 1xp8_A 161 VAAL 164 (366)
T ss_dssp TTTC
T ss_pred hHHh
Confidence 9987
No 333
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.09 E-value=2.6 Score=35.86 Aligned_cols=118 Identities=7% Similarity=-0.003 Sum_probs=59.9
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCcee---eccCCce----eeee---cCChhh---hc----ccCC
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVA---THDQQKL----TAVS---AVELNK---LI----PHTK 71 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~---Sr~G~~~----~Ai~---i~~l~e---i~----~~~~ 71 (353)
.=+||||-+...+. ..|.+|+++.-.- ..+...+. .+.|... +.+. ..+..+ .. ....
T Consensus 29 ~GsGKTtl~~~l~~---~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (220)
T 2cvh_A 29 YASGKTTLALQTGL---LSGKKVAYVDTEG--GFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVD 103 (220)
T ss_dssp TTSSHHHHHHHHHH---HHCSEEEEEESSC--CCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHH---HcCCcEEEEECCC--CCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhh
Confidence 34899999888877 5678888876432 11111111 1222210 0011 111111 11 1122
Q ss_pred -CccEEEEccccCh-H----------HHHHH---HHHH-HhCCCEEEEEecccc-ccc---CCchhHhhhhccccceEec
Q psy8456 72 -DIDVIGIDEGQFF-P----------DVVSF---AESM-ANAGKIVVVAALDGT-FQR---TGFNDILSLIPLAECVEKL 131 (353)
Q Consensus 72 -~~dvV~IDEaQFF-~----------dIv~l---~~~l-~~~G~~VivaGLd~D-Fr~---~pF~~~~~Ll~lAD~I~kL 131 (353)
++++|+|||.+.+ + ++.++ ...+ .+.|++|++..=... ..+ .|..+ ..+..+||.|..|
T Consensus 104 ~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~-~~~~~~~d~vi~l 182 (220)
T 2cvh_A 104 SNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAE-QTLGYRCKDILRL 182 (220)
T ss_dssp TTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCC-HHHHHTSSEEEEE
T ss_pred cCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCC-cceeecCcEEEEE
Confidence 5999999999977 2 12333 3333 356988887654332 221 22221 2455677877777
Q ss_pred c
Q psy8456 132 T 132 (353)
Q Consensus 132 ~ 132 (353)
.
T Consensus 183 ~ 183 (220)
T 2cvh_A 183 D 183 (220)
T ss_dssp E
T ss_pred E
Confidence 4
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=75.96 E-value=1 Score=40.80 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=18.2
Q ss_pred cccc-ccceeeeeccCCCCchhHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELI 168 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li 168 (353)
|+.+ .|++..|+||.||||||-|-
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3444 46788899999999998643
No 335
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.90 E-value=1 Score=41.41 Aligned_cols=22 Identities=45% Similarity=0.471 Sum_probs=17.5
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||-| +.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLl-k~l 61 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL-RII 61 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHH
Confidence 4678899999999999854 443
No 336
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.87 E-value=2.4 Score=42.18 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=31.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k~ 186 (353)
...+++|+-|+||||-...-+..+... |++|+++.-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 345677999999999999999999998 999999875
No 337
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.83 E-value=1.8 Score=41.22 Aligned_cols=36 Identities=17% Similarity=0.019 Sum_probs=30.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
.-.++|+.|+||||-+.+-+..+...|++|.++...
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 457899999999999888888888889999987653
No 338
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.56 E-value=1.7 Score=36.74 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=26.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH-H-----HhCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY-Q-----YANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~-~-----~~~~~~~~~k~~ 187 (353)
+.-++.+|+|||||...+-.+... . ..+.+++++-|.
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 346789999999998744444333 1 346789999886
No 339
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.51 E-value=1.1 Score=41.51 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..++||.||||||- ++.+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL-l~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL-LRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHT
T ss_pred CCCEEEEECCCCCcHHHH-HHHHh
Confidence 467888999999999985 44443
No 340
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=75.49 E-value=7.6 Score=33.69 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceecccccccccccccccceeeeeccCCCCchh
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMFSGKTT 165 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~geI~vi~G~M~sGKt~ 165 (353)
++.++++.+.+.+ .|+++|.-..+. ++. .++.+...+.-.|..-+ +. ... ..+...++++--+||+|.
T Consensus 36 ~l~~~~~~i~~a~-~I~i~G~G~S~~------~A~--~~~~~l~~~g~~~~~~~-~~-~~~-~~~~~DvvI~iS~SG~t~ 103 (200)
T 1vim_A 36 TVGEMIKLIDSAR-SIFVIGAGRSGY------IAK--AFAMRLMHLGYTVYVVG-ET-VTP-RITDQDVLVGISGSGETT 103 (200)
T ss_dssp HHHHHHHHHHHSS-CEEEECSHHHHH------HHH--HHHHHHHHTTCCEEETT-ST-TCC-CCCTTCEEEEECSSSCCH
T ss_pred HHHHHHHHHhcCC-EEEEEEecHHHH------HHH--HHHHHHHhcCCeEEEeC-Cc-ccc-CCCCCCEEEEEeCCCCcH
Confidence 5667777777654 788999844321 110 11112211211121111 11 111 122345777778999999
Q ss_pred HHHHHHHHHHHhCCEEEEEeeec
Q psy8456 166 ELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 166 ~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
++++.++..+..|-+++.++...
T Consensus 104 ~~i~~~~~ak~~g~~vI~IT~~~ 126 (200)
T 1vim_A 104 SVVNISKKAKDIGSKLVAVTGKR 126 (200)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCT
T ss_pred HHHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999887644
No 341
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.44 E-value=7.3 Score=40.07 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=24.3
Q ss_pred CccEEEEccccChH--HHHHHHHHHHhCCCEEEEEe
Q psy8456 72 DIDVIGIDEGQFFP--DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 72 ~~dvV~IDEaQFF~--dIv~l~~~l~~~G~~VivaG 105 (353)
.+|+++||||+.++ ++..+.+.+ ..+..+++.|
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l-~~~~~liLvG 296 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDAL-PDHARVIFLG 296 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC-CTTCEEEEEE
T ss_pred CCCEEEEechhhCCHHHHHHHHHhC-CCCCEEEEEc
Confidence 68999999999886 344444332 4688899887
No 342
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.28 E-value=1.1 Score=40.82 Aligned_cols=22 Identities=36% Similarity=0.232 Sum_probs=17.5
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..|+||.||||||-| +.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl-~~l 55 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT-KLI 55 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHH
Confidence 4678889999999999854 443
No 343
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=75.26 E-value=1.1 Score=41.46 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccCCCchhHHhhhhcccceEEee
Q psy8456 283 VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 328 (353)
Q Consensus 283 ~~~~~~~~~~~g~~Vi~~gLd~df~~~~F~~~~~L~~~ad~v~kl~ 328 (353)
+.+.+.++++.|+.|++..=|. ..+..+||.|.-|.
T Consensus 198 ~~~~l~~l~~~g~tvi~vtHd~----------~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 198 VLSVMKQLANEGMTMVVVTHEM----------GFAREVGDRVLFMD 233 (263)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH----------HHHHHHCSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEcCCH----------HHHHHhCCEEEEEE
Confidence 6677777776788888875432 22445788887764
No 344
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=75.18 E-value=1.2 Score=41.34 Aligned_cols=27 Identities=52% Similarity=0.594 Sum_probs=19.9
Q ss_pred ccccccccceeeeeccCCCCchhHHHHHHH
Q psy8456 143 AFTKRIGQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 143 ~f~~Ri~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+++.. |++..++||.||||||-| +.+.
T Consensus 25 sl~i~--Ge~~~i~G~NGsGKSTLl-k~l~ 51 (263)
T 2pjz_A 25 NLEVN--GEKVIILGPNGSGKTTLL-RAIS 51 (263)
T ss_dssp EEEEC--SSEEEEECCTTSSHHHHH-HHHT
T ss_pred eEEEC--CEEEEEECCCCCCHHHHH-HHHh
Confidence 34444 778899999999999854 4443
No 345
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.08 E-value=4.7 Score=36.59 Aligned_cols=31 Identities=6% Similarity=-0.006 Sum_probs=22.7
Q ss_pred cCCCCchHHHHHHHHHHHHH--cCceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRYQY--ANYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~--agkkvlv~Kp~ 37 (353)
...-+|||.-.+..+..+.. .+.+++++-|.
T Consensus 51 ~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 51 ARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp CCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred CCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 34569999987776655543 47889999995
No 346
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=75.07 E-value=4.9 Score=33.82 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccc--ccccccceeeeeccCCCCc
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAF--TKRIGQEKEVILGPMFSGK 163 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f--~~Ri~geI~vi~G~M~sGK 163 (353)
++.++++.+.+.+..|+++|.-..+. ++. .++.+...+.-.|......... .....+...++++--+||.
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~------~a~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~ 108 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGH------IGR--KMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGE 108 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHH------HHH--HHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSC
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHH------HHH--HHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCC
Confidence 56777777877766899999854332 000 1111111111111111100000 1111233456777779999
Q ss_pred hhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 164 TTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 164 t~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
|.++++.++..+.+|-+++.++...
T Consensus 109 t~~~~~~~~~ak~~g~~vi~IT~~~ 133 (183)
T 2xhz_A 109 SSEITALIPVLKRLHVPLICITGRP 133 (183)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEESCT
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCC
Confidence 9999999999999999999887643
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.07 E-value=0.99 Score=38.84 Aligned_cols=19 Identities=37% Similarity=0.036 Sum_probs=15.1
Q ss_pred cceeeeeccCCCCchhHHH
Q psy8456 150 QEKEVILGPMFSGKTTELI 168 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li 168 (353)
+.+..|.|+++|||||-+-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467799999999998543
No 348
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=74.99 E-value=1.1 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.5
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..++||.||||||- ++.+
T Consensus 32 ~Ge~~~liG~nGsGKSTL-l~~i 53 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL-LQIV 53 (266)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHH
T ss_pred CCCEEEEECCCCCcHHHH-HHHH
Confidence 467888999999999985 4444
No 349
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.96 E-value=2.8 Score=42.33 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=35.6
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee-cCCCCCCCceeeccCcccceeecccHhhhccc--CCCccEEEEe
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA-KDDRYDTEKVSTHDQQKLTAVSAVELNKLIPH--TKDIDVIGID 229 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~-~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~--~~~~~~i~ID 229 (353)
-+++||.|+|||+- ++.+.+ ..+..++.+... +-..+ .|. .......++.. ...+.+|+||
T Consensus 52 vLL~GppGtGKT~L-araia~--~~~~~f~~is~~~~~~~~--------~g~-----~~~~~r~lf~~A~~~~p~ILfID 115 (476)
T 2ce7_A 52 ILLVGPPGTGKTLL-ARAVAG--EANVPFFHISGSDFVELF--------VGV-----GAARVRDLFAQAKAHAPCIVFID 115 (476)
T ss_dssp EEEECCTTSSHHHH-HHHHHH--HHTCCEEEEEGGGTTTCC--------TTH-----HHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEECCCCCCHHHH-HHHHHH--HcCCCeeeCCHHHHHHHH--------hcc-----cHHHHHHHHHHHHhcCCCEEEEe
Confidence 58999999999864 455543 335554433321 11111 111 11122223221 3467899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|++.+
T Consensus 116 Eid~l 120 (476)
T 2ce7_A 116 EIDAV 120 (476)
T ss_dssp TGGGT
T ss_pred chhhh
Confidence 99985
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.96 E-value=2.5 Score=43.11 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=31.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
...++|+-||||||-+.+-++.+...|++|+++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45678999999999999999999888999999975
No 351
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.80 E-value=1.2 Score=40.63 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..++||.||||||- ++.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL-lk~l~ 50 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL-GKILA 50 (250)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHh
Confidence 467888999999999985 44444
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.77 E-value=1.7 Score=36.40 Aligned_cols=18 Identities=44% Similarity=0.355 Sum_probs=14.1
Q ss_pred eeeeeccCCCCchhHHHH
Q psy8456 152 KEVILGPMFSGKTTELIR 169 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~ 169 (353)
+.+++|+++|||||-.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp SEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 357899999999985433
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.68 E-value=5.6 Score=34.62 Aligned_cols=28 Identities=7% Similarity=-0.035 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeec
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~ 37 (353)
=|||||-+.+.+..+..+|.+|.++|..
T Consensus 14 GsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 14 HSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4899998888888888899999999954
No 354
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=74.49 E-value=2.7 Score=39.97 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=28.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
+....++||.||||||-|-.-...+...+.++.++...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 56778999999999997766666666667777776543
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=74.47 E-value=1.2 Score=40.84 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccCCCchhHHhhhhcccceEEee
Q psy8456 283 VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 328 (353)
Q Consensus 283 ~~~~~~~~~~~g~~Vi~~gLd~df~~~~F~~~~~L~~~ad~v~kl~ 328 (353)
+.+...++++.|+.|++..=|. ..+..+||.+.-|.
T Consensus 172 l~~~l~~l~~~g~tviivtHd~----------~~~~~~~d~v~~l~ 207 (249)
T 2qi9_C 172 LDKILSALSQQGLAIVMSSHDL----------NHTLRHAHRAWLLK 207 (249)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH----------HHHHHHCSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCH----------HHHHHhCCEEEEEE
Confidence 6677777776688888876432 22346788877664
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.23 E-value=2.4 Score=42.22 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=33.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.+....++|+-||||||-+..-+..+...|.+|+++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45667788999999999999998888888999999874
No 357
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=74.00 E-value=1.3 Score=42.64 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.5
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHH
Q psy8456 145 TKRIGQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 145 ~~Ri~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+..+..++.+|+||.||||||-| ..+.
T Consensus 18 ~i~~~~g~~~i~G~NGaGKTTll-~ai~ 44 (365)
T 3qf7_A 18 DIEFQSGITVVEGPNGAGKSSLF-EAIS 44 (365)
T ss_dssp EEECCSEEEEEECCTTSSHHHHH-HHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHH-HHHH
Confidence 44455668999999999999755 5554
No 358
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=73.97 E-value=3.1 Score=39.71 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=28.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+....++|+.||||||-|-+-+......+.++.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 4456799999999999887777777777777776654
No 359
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.97 E-value=1.2 Score=41.42 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=26.4
Q ss_pred eEeccceecccccc-cc--ccccc-ccceeeeeccCCCCchhHHHHHH
Q psy8456 128 VEKLTAVCMSCFRD-AA--FTKRI-GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 128 I~kL~AvC~~CG~~-A~--f~~Ri-~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
+.+++.++..-|.. +- .++.+ .|++..++||.||||||- ++.+
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTL-lk~l 67 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTL-LNIL 67 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHH-HHHH
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHH-HHHH
Confidence 45555555433432 21 23333 467889999999999985 4444
No 360
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.92 E-value=1.6 Score=38.37 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=20.0
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHH
Q psy8456 146 KRIGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 146 ~Ri~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..+..++.+|+||.+|||||- +..+.-
T Consensus 19 i~f~~~~~~I~G~NgsGKSti-l~ai~~ 45 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSL-LDAILV 45 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHH-HHHHHH
T ss_pred EEeCCCeEEEEcCCCCCHHHH-HHHHHH
Confidence 334567999999999999975 455543
No 361
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=73.91 E-value=23 Score=35.50 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=19.6
Q ss_pred CCCccEEEEccccC------hHHHHHHHHHHHh
Q psy8456 70 TKDIDVIGIDEGQF------FPDVVSFAESMAN 96 (353)
Q Consensus 70 ~~~~dvV~IDEaQF------F~dIv~l~~~l~~ 96 (353)
...+++|+|||||- -+++..+...+..
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~ 205 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNE 205 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHH
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhh
Confidence 46789999999994 3466666666654
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.82 E-value=1.3 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=18.3
Q ss_pred cccc-ccceeeeeccCCCCchhHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELI 168 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li 168 (353)
|+.+ .|++..|+||.||||||-|-
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHH
Confidence 3444 46788999999999998643
No 363
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=73.81 E-value=1.3 Score=40.58 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=17.9
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.|++..++||.||||||- ++.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL-l~~l~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL-LDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHHH-HHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHh
Confidence 467888999999999985 44443
No 364
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.75 E-value=4 Score=39.46 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCCceeeccCCceeeee---cCChhhh---cc---cCCCccEEEEc
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVS---AVELNKL---IP---HTKDIDVIGID 79 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~---i~~l~ei---~~---~~~~~dvV~ID 79 (353)
.-+|||+-.++.+.+....|.+|+++....... .....+.|...+.+. .++..++ .. ...++++|+||
T Consensus 72 pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~---~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVID 148 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD---PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 148 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc---HHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEc
Confidence 358999999999999998999999987642110 111223343222211 1122222 21 13579999999
Q ss_pred cccChH---H--------------------HHHHHHHHHhCCCEEEEEec
Q psy8456 80 EGQFFP---D--------------------VVSFAESMANAGKIVVVAAL 106 (353)
Q Consensus 80 EaQFF~---d--------------------Iv~l~~~l~~~G~~VivaGL 106 (353)
..|.+. + +.++...+.+.|++|++..-
T Consensus 149 sl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 149 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp CGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 999872 2 11222333578999987654
No 365
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=73.70 E-value=2.3 Score=45.59 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=32.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH-hCCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY-ANYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~-~~~~~~~~k~~~ 188 (353)
+...+|.||.|+|||+-+...+..+.. .+.++++..|+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn 410 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 410 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcH
Confidence 457899999999999999888887765 678999887753
No 366
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.65 E-value=3.3 Score=43.22 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=21.8
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
-+++||.|+||| .|.+.+.+.. +..++.+.-
T Consensus 491 ~ll~G~~GtGKT-~la~~la~~l--~~~~~~i~~ 521 (758)
T 1r6b_X 491 FLFAGPTGVGKT-EVTVQLSKAL--GIELLRFDM 521 (758)
T ss_dssp EEEECSTTSSHH-HHHHHHHHHH--TCEEEEEEG
T ss_pred EEEECCCCCcHH-HHHHHHHHHh--cCCEEEEec
Confidence 478999999998 5666666554 666665543
No 367
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.61 E-value=8.8 Score=33.31 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHH-HHHH------HcCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRI-RRYQ------YANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~-~ry~------~agkkvlv~Kp~ 37 (353)
..-+|||...+--+ .+.. ..+.+++++-|.
T Consensus 70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 45699999744333 2221 357889999995
No 368
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.55 E-value=1.3 Score=38.34 Aligned_cols=22 Identities=32% Similarity=0.316 Sum_probs=15.8
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
..++||.||||||-|-.-+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999654444333
No 369
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.51 E-value=1.3 Score=40.99 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=26.8
Q ss_pred eEeccceeccccc----ccc--ccccc-ccceeeeeccCCCCchhHHHHHHH
Q psy8456 128 VEKLTAVCMSCFR----DAA--FTKRI-GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 128 I~kL~AvC~~CG~----~A~--f~~Ri-~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
+.+++.++..-+. .+. .|+.+ .|++..|+||.||||||- ++.+.
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTL-lk~l~ 66 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQ 66 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHH-HHHHT
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHH-HHHHh
Confidence 3555556544432 121 23444 467888999999999985 44443
No 370
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=73.34 E-value=2.5 Score=37.45 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=22.9
Q ss_pred eeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
++=|+-||||||.+-.-..++ .+|.+|+.++.
T Consensus 6 ~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~e 37 (205)
T 4hlc_A 6 TFEGPEGSGKTTVINEVYHRL-VKDYDVIMTRE 37 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHH-TTTSCEEEEES
T ss_pred EEECCCCCcHHHHHHHHHHHH-HCCCCEEEeeC
Confidence 456999999999754444444 46888887654
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.12 E-value=1.8 Score=38.89 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.8
Q ss_pred eeeeeccCCCCchhHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.-+++||++|||||-.-+-..++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999765555554
No 372
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.05 E-value=2 Score=40.76 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=21.6
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.--+++||.|+|||+- ++.+.+ ..+..++.+..
T Consensus 118 ~~vLl~GppGtGKT~l-a~aia~--~~~~~~~~i~~ 150 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLI-GKCIAS--QSGATFFSISA 150 (357)
T ss_dssp SEEEEESSTTSSHHHH-HHHHHH--HTTCEEEEEEG
T ss_pred ceEEEECCCCCCHHHH-HHHHHH--HcCCeEEEEeh
Confidence 4568999999999964 444433 34666665543
No 373
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.91 E-value=4.4 Score=34.81 Aligned_cols=30 Identities=3% Similarity=-0.064 Sum_probs=20.1
Q ss_pred CCCCchHHH-HHHHHHHHH--HcCceEEEEeec
Q psy8456 8 DRINPYIVH-FCRRIRRYQ--YANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSte-LLrr~~ry~--~agkkvlv~Kp~ 37 (353)
..-+|||.- ++-.+++.. ..+.+++++-|.
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 456899987 455554443 245689999995
No 374
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=72.59 E-value=5.9 Score=38.57 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=59.1
Q ss_pred CCCchHHHHHHHHHHHHHc--CceEEEEeeccCCCCCCCceeeccCCceeee---ecCChhhh-c---c-----cCCCcc
Q psy8456 9 RINPYIVHFCRRIRRYQYA--NYRCMIVRYAKDDRYDTEKVATHDQQKLTAV---SAVELNKL-I---P-----HTKDID 74 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~a--gkkvlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai---~i~~l~ei-~---~-----~~~~~d 74 (353)
.=+||||-+|+.+.+...+ |.+|+.+...-.-+ ..-..+.|...+.. ..++.+++ . . ....++
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~---~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~ 113 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT---PAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKV 113 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC---HHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh---HHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCce
Confidence 4589999999999998876 78888876532111 01123445433322 12344333 1 1 235799
Q ss_pred EEEEccccCh-H--HH----------------------HHHHHHHHhCCCEEEEEecccccccCCch
Q psy8456 75 VIGIDEGQFF-P--DV----------------------VSFAESMANAGKIVVVAALDGTFQRTGFN 116 (353)
Q Consensus 75 vV~IDEaQFF-~--dI----------------------v~l~~~l~~~G~~VivaGLd~DFr~~pF~ 116 (353)
+|+||=+|-+ + ++ ..+...+...|++|++-+--++ -+..|+
T Consensus 114 lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~~fg 179 (333)
T 3io5_A 114 VVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQEMFS 179 (333)
T ss_dssp EEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC---------
T ss_pred EEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCcccC
Confidence 9999999977 2 11 1122234578999999998776 565553
No 375
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=72.21 E-value=1.9 Score=40.80 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.9
Q ss_pred cccceeeeeccCCCCchhHHHHHHH
Q psy8456 148 IGQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 148 i~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
...++.+|+||.+|||||- +..+.
T Consensus 21 f~~~~~~i~G~NGsGKS~l-leAi~ 44 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSL-LDAIL 44 (339)
T ss_dssp CCSEEEEEECCTTSSHHHH-HHHHH
T ss_pred CCCCeEEEECCCCCCHHHH-HHHHH
Confidence 4567899999999999974 55553
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=72.08 E-value=3.3 Score=39.19 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=29.7
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
+....++|+.||||||-+-.-+..+...|.++.++..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 3456789999999999877777777777888887764
No 377
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.05 E-value=2.3 Score=40.72 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=42.5
Q ss_pred CchhHhhhhccccceEeccceeccccccccccccc-ccceeeeeccCCCCchhHHHHHHHHHHHh------CCEEEEEee
Q psy8456 114 GFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRI-GQEKEVILGPMFSGKTTELIRRIRRYQYA------NYRCMIVRY 186 (353)
Q Consensus 114 pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~~~~------~~~~~~~k~ 186 (353)
.|.....|+.....+..+++-|..= +.....-+ .+++..|+||.+|||||-+...+..++.. |-+|+.+.-
T Consensus 96 ~~~~~~~~~~~~~~~~~isTG~~~L--D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 96 TFMRADEYLKKRATIGRISTGSKSL--DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SCEEHHHHHHHHHTCCEECCSCHHH--HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCccHHHHHhhhccCCeecCCCHHH--HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4665666665444455555544210 11111112 46788999999999999999888776422 346665543
No 378
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.98 E-value=1.9 Score=38.60 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+.+.+++||.||||||-+-.-+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 467889999999999985444333
No 379
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=71.83 E-value=3.2 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=28.9
Q ss_pred CccEEEEccccChH-HHHHHHHHHHhCCCEEEEEe
Q psy8456 72 DIDVIGIDEGQFFP-DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 72 ~~dvV~IDEaQFF~-dIv~l~~~l~~~G~~VivaG 105 (353)
.+++|+|||+|-++ ...+++..+...+..|++.|
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vG 247 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVG 247 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEE
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEc
Confidence 48999999999997 56788888888888888886
No 380
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=71.78 E-value=7.8 Score=39.94 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeecc
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAK 38 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~i 38 (353)
-||||+....-+.+.-..|.+++++-|..
T Consensus 50 GsGKT~~~~l~il~~~~~~~~~l~i~P~r 78 (702)
T 2p6r_A 50 AAGKTLLAEMAMVREAIKGGKSLYVVPLR 78 (702)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhCCcEEEEeCcH
Confidence 48999998777766555688999999953
No 381
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=71.66 E-value=1.8 Score=43.01 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=34.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k~~~ 188 (353)
+++.+|.|+.++|||+-+++.+.+.... |.+|+++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 5688999999999999999999998776 88999887654
No 382
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=71.64 E-value=7.8 Score=32.67 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccc-cc--ccccccceeeeeccCCCC
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDA-AF--TKRIGQEKEVILGPMFSG 162 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A-~f--~~Ri~geI~vi~G~M~sG 162 (353)
++.++++.+.+. ..|+++|.-..+- ... .++.....+.--|......+ .+ .....+...++++--+||
T Consensus 28 ~l~~~~~~i~~a-~~I~i~G~G~S~~-----~a~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG 98 (187)
T 3sho_A 28 AIEAAVEAICRA-DHVIVVGMGFSAA-----VAV---FLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWR 98 (187)
T ss_dssp HHHHHHHHHHHC-SEEEEECCGGGHH-----HHH---HHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSS
T ss_pred HHHHHHHHHHhC-CEEEEEecCchHH-----HHH---HHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCC
Confidence 566777777765 4899999855331 000 11111112222222111111 11 112223345777778999
Q ss_pred chhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 163 KTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 163 Kt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.|.++++.++..+.+|-+++.++...
T Consensus 99 ~t~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 99 YLRDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 99999999999999999999888654
No 383
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=71.55 E-value=1.5 Score=39.88 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=16.9
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
++..++||.||||||-| +.+..
T Consensus 25 e~~~liG~nGsGKSTLl-~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL-ELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHH-HHHHT
T ss_pred EEEEEECCCCCCHHHHH-HHHhC
Confidence 67789999999999854 44443
No 384
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.47 E-value=3.1 Score=41.38 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=39.5
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcc--cCCCccEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIP--HTKDIDVIGID 229 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~--~~~~~~~i~ID 229 (353)
-.+++||.|+|||. |.+.+.+ ..|...+.++.+. -+....|.. ...+.++.. ....+-+|+||
T Consensus 184 GvLL~GPPGTGKTl-lAkAiA~--e~~~~f~~v~~s~-------l~sk~vGes-----e~~vr~lF~~Ar~~aP~IIFiD 248 (405)
T 4b4t_J 184 GVILYGPPGTGKTL-LARAVAH--HTDCKFIRVSGAE-------LVQKYIGEG-----SRMVRELFVMAREHAPSIIFMD 248 (405)
T ss_dssp CEEEESCSSSSHHH-HHHHHHH--HHTCEEEEEEGGG-------GSCSSTTHH-----HHHHHHHHHHHHHTCSEEEEEE
T ss_pred ceEEeCCCCCCHHH-HHHHHHH--hhCCCceEEEhHH-------hhccccchH-----HHHHHHHHHHHHHhCCceEeee
Confidence 45899999999984 4555433 4577777665431 112222321 122333332 23557899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|+.-+
T Consensus 249 EiDai 253 (405)
T 4b4t_J 249 EIDSI 253 (405)
T ss_dssp SSSCC
T ss_pred cchhh
Confidence 99963
No 385
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=71.36 E-value=3.8 Score=35.28 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=28.7
Q ss_pred eeecc-CCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 154 VILGP-MFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 154 vi~G~-M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
++.|. .++||||--+.-+..+..+|++|++++|.
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~ 39 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV 39 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcce
Confidence 34444 79999999999999999999999999874
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.00 E-value=2.2 Score=38.21 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=13.8
Q ss_pred eeeeeccCCCCchhHHH
Q psy8456 152 KEVILGPMFSGKTTELI 168 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li 168 (353)
+-.|.|+|+|||||-.-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45789999999998543
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=70.52 E-value=1.4 Score=40.71 Aligned_cols=16 Identities=25% Similarity=0.065 Sum_probs=13.6
Q ss_pred eeeeeccCCCCchhHH
Q psy8456 152 KEVILGPMFSGKTTEL 167 (353)
Q Consensus 152 I~vi~G~M~sGKt~~L 167 (353)
+-.+.|+|+|||||-.
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999854
No 388
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=70.47 E-value=7.1 Score=34.28 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=0.0
Q ss_pred CchHHH-HHHHHHHHH-------HcCceEEEEeeccCCC----------------CCCCceeeccCCcee----------
Q psy8456 11 NPYIVH-FCRRIRRYQ-------YANYRCMIVRYAKDDR----------------YDTEKVATHDQQKLT---------- 56 (353)
Q Consensus 11 ~GKSte-LLrr~~ry~-------~agkkvlv~Kp~iDtR----------------y~~~~I~Sr~G~~~~---------- 56 (353)
||||.- ++-.+.+.. ..+.+++++-| || .+.....-+.|....
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~P---t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (242)
T 3fe2_A 77 SGKTLSYLLPAIVHINHQPFLERGDGPICLVLAP---TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 153 (242)
T ss_dssp SCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECS---SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhccccccCCCCEEEEEeC---cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCC
Q ss_pred eeecCChhhhc-------ccCCCccEEEEcccc------ChHHHHHHHHHHHhCCCEEEEEe
Q psy8456 57 AVSAVELNKLI-------PHTKDIDVIGIDEGQ------FFPDVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 57 Ai~i~~l~ei~-------~~~~~~dvV~IDEaQ------FF~dIv~l~~~l~~~G~~VivaG 105 (353)
-+.+.++.-+. ....++++|+||||| |.+++..+.+.+...-..+.+++
T Consensus 154 ~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 154 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp SEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred CEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
No 389
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=70.20 E-value=12 Score=33.16 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=55.8
Q ss_pred HHHHHHHHHHh----CCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccc-cc-ccccccccceeeeeccC
Q psy8456 86 DVVSFAESMAN----AGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFR-DA-AFTKRIGQEKEVILGPM 159 (353)
Q Consensus 86 dIv~l~~~l~~----~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~-~A-~f~~Ri~geI~vi~G~M 159 (353)
++.++++.+.+ ....|+++|.-..+-- +. .++-+..++.--|..-.. .. .......+...++++--
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~------A~--~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS 114 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQI------AM--NIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLIS 114 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHH------HH--HHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHHH------HH--HHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEc
Confidence 56677777776 3788999998543310 00 111122222211211111 11 11112223345777778
Q ss_pred CCCchhHHHHHHHHHHH--hCCEEEEEeeec
Q psy8456 160 FSGKTTELIRRIRRYQY--ANYRCMIVRYAK 188 (353)
Q Consensus 160 ~sGKt~~Li~~~~~~~~--~~~~~~~~k~~~ 188 (353)
+||.|.++++.++..+. +|-+++.++...
T Consensus 115 ~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~ 145 (220)
T 3etn_A 115 NSGKTREIVELTQLAHNLNPGLKFIVITGNP 145 (220)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred CCCCCHHHHHHHHHHHhcCCCCeEEEEECCC
Confidence 99999999999999999 999999888644
No 390
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=70.19 E-value=16 Score=37.56 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=22.9
Q ss_pred CCCchHHHHHHHHHHHH-HcCceEEEEeecc
Q psy8456 9 RINPYIVHFCRRIRRYQ-YANYRCMIVRYAK 38 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~-~agkkvlv~Kp~i 38 (353)
.-||||+....-+.+.- ..|.+++++-|..
T Consensus 55 TGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 55 TGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 45999999877665443 4789999999953
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=70.06 E-value=3.6 Score=41.76 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=26.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
.+.+++|.|+|||||---+-.+.+...+..+.++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 467889999999999655555556677777766654
No 392
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.80 E-value=34 Score=33.64 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHcCc-------eEEEEeeccCC----------------CCCCCceeeccCCce-----------e
Q psy8456 11 NPYIVHFCRRIRRYQYANY-------RCMIVRYAKDD----------------RYDTEKVATHDQQKL-----------T 56 (353)
Q Consensus 11 ~GKSteLLrr~~ry~~agk-------kvlv~Kp~iDt----------------Ry~~~~I~Sr~G~~~-----------~ 56 (353)
+|||.-.+--+-.....++ +++++-|...- ......+.+-.|-.- .
T Consensus 122 sGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 201 (563)
T 3i5x_A 122 TGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201 (563)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCC
Q ss_pred e-eecCChhhhcc--------cCCCccEEEEcccc------ChHHHHHHHHHHHhCCC----EEEEEecccccccCCchh
Q psy8456 57 A-VSAVELNKLIP--------HTKDIDVIGIDEGQ------FFPDVVSFAESMANAGK----IVVVAALDGTFQRTGFND 117 (353)
Q Consensus 57 A-i~i~~l~ei~~--------~~~~~dvV~IDEaQ------FF~dIv~l~~~l~~~G~----~VivaGLd~DFr~~pF~~ 117 (353)
+ +.+.++.-+.. ....+++|+||||| |-+++..+...+..... .+-+.+|..+.....-.-
T Consensus 202 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~ 281 (563)
T 3i5x_A 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKL 281 (563)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHH
T ss_pred CCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHH
Q ss_pred HhhhhccccceEeccceecccccccccccccccceeeeeccCCCCchhHHHHHHHHHHHh---CCEEEEEeee
Q psy8456 118 ILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYA---NYRCMIVRYA 187 (353)
Q Consensus 118 ~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~geI~vi~G~M~sGKt~~Li~~~~~~~~~---~~~~~~~k~~ 187 (353)
...++.....+. ..............-...+...+....+-..++..+...... +.+++||-+.
T Consensus 282 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s 348 (563)
T 3i5x_A 282 ANNIMNKKECLF------LDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 348 (563)
T ss_dssp TTTTCCSSEEEE------EESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred HHHhcCCCceEE------EeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCc
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=69.80 E-value=6.5 Score=39.85 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.5
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQ 175 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~ 175 (353)
.+...+++||.|+|||| |++.+.++.
T Consensus 107 ~g~~vll~Gp~GtGKTt-lar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTS-LAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHhc
Confidence 46677899999999995 556665554
No 394
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.60 E-value=2.6 Score=42.38 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCCC--ce---eeccCCceeee-ecCChhhhc----c--cCCCccEEE
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTE--KV---ATHDQQKLTAV-SAVELNKLI----P--HTKDIDVIG 77 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~~--~I---~Sr~G~~~~Ai-~i~~l~ei~----~--~~~~~dvV~ 77 (353)
=+||||-+..-+..+..+|++|+++.- |++.... .. ..+.|...... ...++.++. . ...++|+|+
T Consensus 110 G~GKTTt~~kLA~~l~~~G~kVllv~~--D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVI 187 (443)
T 3dm5_A 110 GSGKTTTVAKLARYFQKRGYKVGVVCS--DTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIII 187 (443)
T ss_dssp TSSHHHHHHHHHHHHHTTTCCEEEEEC--CCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEeC--CCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 489999999999999999999999974 6654310 11 11222221111 112332322 1 125699999
Q ss_pred EccccCh
Q psy8456 78 IDEGQFF 84 (353)
Q Consensus 78 IDEaQFF 84 (353)
||.+=..
T Consensus 188 IDTaGrl 194 (443)
T 3dm5_A 188 VDTAGRH 194 (443)
T ss_dssp EECCCCS
T ss_pred EECCCcc
Confidence 9998665
No 395
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=69.39 E-value=3.9 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=30.9
Q ss_pred eeeecc-CCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 153 EVILGP-MFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 153 ~vi~G~-M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
-+|.|. .++|||+--+--++.+..+|++|..+||-
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv 42 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPV 42 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecce
Confidence 467887 89999999888888899999999999983
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=69.37 E-value=2.7 Score=36.33 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=26.8
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRY 186 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~ 186 (353)
...|+|+.+|||||-+-.-+.-|...|.++=.++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 45689999999999887777778877766554443
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=69.33 E-value=1.8 Score=40.66 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=17.6
Q ss_pred ccceeeeeccCCCCchhHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~ 171 (353)
.|++..|+||.||||||-| +.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl-k~l 84 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL-MMI 84 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH-HHH
T ss_pred CCCEEEEECCCCCcHHHHH-HHH
Confidence 4678899999999999864 443
No 398
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.16 E-value=11 Score=33.85 Aligned_cols=30 Identities=3% Similarity=-0.076 Sum_probs=19.7
Q ss_pred CCCCchHHH-HHHHHHHHHH------cCceEEEEeec
Q psy8456 8 DRINPYIVH-FCRRIRRYQY------ANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSte-LLrr~~ry~~------agkkvlv~Kp~ 37 (353)
..-||||.- ++-.+..... .|.+++++-|.
T Consensus 99 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 99 KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred cCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 345899976 3333333332 57889999994
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=69.08 E-value=1.6 Score=39.69 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=17.8
Q ss_pred CccHHHHHHHHHhCCCEEEEEe
Q psy8456 280 FPDVVSFAESMANAGKIVVVAA 301 (353)
Q Consensus 280 f~~~~~~~~~~~~~g~~Vi~~g 301 (353)
||++.++++.|...|+++.++-
T Consensus 190 ~~g~~e~L~~L~~~g~~~~v~T 211 (301)
T 1ltq_A 190 NPMVVELSKMYALMGYQIVVVS 211 (301)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHHHHHHHCCCeEEEEe
Confidence 7888888888888888876663
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=68.94 E-value=2.5 Score=35.93 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=20.3
Q ss_pred CccEEEEccccChH-------HHH-HHHHHHHhCCCEEEEEe
Q psy8456 72 DIDVIGIDEGQFFP-------DVV-SFAESMANAGKIVVVAA 105 (353)
Q Consensus 72 ~~dvV~IDEaQFF~-------dIv-~l~~~l~~~G~~VivaG 105 (353)
++++++|||++..+ .+. .+.+.....+.++|+.+
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~ts 156 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTS 156 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 46799999997753 132 24443334566666664
No 401
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=68.85 E-value=1.8 Score=42.19 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=20.9
Q ss_pred cccc-ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
|+.+ .|++..++||.|||||| |++.+.-+
T Consensus 24 sl~i~~Ge~~~llGpsGsGKST-LLr~iaGl 53 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTT-LLRCLAGF 53 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHH-HHHHHHTS
T ss_pred EEEEcCCCEEEEECCCCchHHH-HHHHHhcC
Confidence 3444 46788899999999998 45555544
No 402
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.65 E-value=1.8 Score=41.17 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQ 175 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~ 175 (353)
++...++||.|||||| |++.+-.+.
T Consensus 171 g~~v~i~G~~GsGKTT-ll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTT-YIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHH-HHHHGGGGS
T ss_pred CCEEEEECCCCCCHHH-HHHHHhCCC
Confidence 5677899999999999 666666653
No 403
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=68.61 E-value=4.5 Score=41.57 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=29.3
Q ss_pred CCccEEEEccccChH-HHHHHHHHHHhCCCEEEEEe
Q psy8456 71 KDIDVIGIDEGQFFP-DVVSFAESMANAGKIVVVAA 105 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~-dIv~l~~~l~~~G~~VivaG 105 (353)
..+++|+|||+|=++ ...+++..+...+..+++.|
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vG 241 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVG 241 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEEC
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEe
Confidence 468999999999997 55788888887777888888
No 404
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=68.54 E-value=19 Score=31.59 Aligned_cols=29 Identities=3% Similarity=-0.205 Sum_probs=19.0
Q ss_pred CCCchHHHHHHHHHHHH-HcCc----eEEEEeec
Q psy8456 9 RINPYIVHFCRRIRRYQ-YANY----RCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~-~agk----kvlv~Kp~ 37 (353)
.-||||+.+..-+.... ..++ ++++.-|.
T Consensus 85 TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~ 118 (235)
T 3llm_A 85 TGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESS
T ss_pred CCCCcHHhHHHHHhcchhhcCCCCceEEEEeccc
Confidence 45899997766654433 3444 78888784
No 405
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=68.34 E-value=7.2 Score=33.52 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccceEeccceeccccccccc---ccccccceeeeeccCCCC
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMSCFRDAAF---TKRIGQEKEVILGPMFSG 162 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f---~~Ri~geI~vi~G~M~sG 162 (353)
++.++++.+.+....|+++|.-..+- ++. .++.+..++.--|... .+..+ .....+...+++.--+||
T Consensus 33 ~i~~~~~~i~~a~~~I~i~G~G~S~~------~A~--~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~dvvI~iS~sG 103 (201)
T 3fxa_A 33 ALVKTVEKIAECTGKIVVAGCGTSGV------AAK--KLVHSFNCIERPAVFL-TPSDAVHGTLGVLQKEDILILISKGG 103 (201)
T ss_dssp HHHHHHHHHHHCSSCEEEECCTHHHH------HHH--HHHHHHHHTTCCEEEC-CHHHHTTTGGGGCCTTCEEEEECSSS
T ss_pred HHHHHHHHHHhcCCcEEEEEecHHHH------HHH--HHHHHHHhcCCcEEEe-CchHHHhhhhhcCCCCCEEEEEeCCC
Confidence 56777888877755889999844321 110 1121222222122111 11111 111223334666677999
Q ss_pred chhHHHHHHHHHHHhCCEEEEEeeecC
Q psy8456 163 KTTELIRRIRRYQYANYRCMIVRYAKD 189 (353)
Q Consensus 163 Kt~~Li~~~~~~~~~~~~~~~~k~~~D 189 (353)
.|.++++.++..+.+|-+++.++...+
T Consensus 104 ~t~~~~~~~~~ak~~g~~vi~IT~~~~ 130 (201)
T 3fxa_A 104 NTGELLNLIPACKTKGSTLIGVTENPD 130 (201)
T ss_dssp CCHHHHTTHHHHHHHTCEEEEEESCTT
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999999998886543
No 406
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=68.14 E-value=3.9 Score=40.90 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeeccCCCCCC--Ccee---eccCCceeee-ecCChhhhc----c--cCCCccEEE
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDT--EKVA---THDQQKLTAV-SAVELNKLI----P--HTKDIDVIG 77 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~iDtRy~~--~~I~---Sr~G~~~~Ai-~i~~l~ei~----~--~~~~~dvV~ 77 (353)
=+||||-+..-+..+...|++|+++.- |+.... +.+. .+.|...... ...++.++. . ...++|+|+
T Consensus 107 GsGKTTt~~kLA~~l~~~G~kVllv~~--D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvI 184 (433)
T 3kl4_A 107 GSGKTTTAGKLAYFYKKRGYKVGLVAA--DVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIII 184 (433)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEEE--CCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEec--CccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999999875 433211 0111 1223222111 111222221 1 235899999
Q ss_pred EccccC
Q psy8456 78 IDEGQF 83 (353)
Q Consensus 78 IDEaQF 83 (353)
||++-.
T Consensus 185 IDTaGr 190 (433)
T 3kl4_A 185 VDTAGR 190 (433)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999976
No 407
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.97 E-value=3.2 Score=40.87 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=27.6
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH------hCCEEEEEee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY------ANYRCMIVRY 186 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~------~~~~~~~~k~ 186 (353)
+++..|+||.+|||||-+...+-.... .+.+++++..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 457889999999999999876655433 3567777654
No 408
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=67.94 E-value=3.5 Score=45.84 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=32.2
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.-++.||+|||||...+..+......|++++++-|..
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 4589999999999998888877777899999999964
No 409
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=67.79 E-value=6.8 Score=36.52 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=50.3
Q ss_pred EEEEccc--cC-hHHHHHHHHHHHhCCCEEEEEecccccccCC-chhHhhhhccccc----eEeccceeccccccccccc
Q psy8456 75 VIGIDEG--QF-FPDVVSFAESMANAGKIVVVAALDGTFQRTG-FNDILSLIPLAEC----VEKLTAVCMSCFRDAAFTK 146 (353)
Q Consensus 75 vV~IDEa--QF-F~dIv~l~~~l~~~G~~VivaGLd~DFr~~p-F~~~~~Ll~lAD~----I~kL~AvC~~CG~~A~f~~ 146 (353)
++++|=. .| |..+..+...+...++++++.+=..|--.+. .+....+..++.+ +..++|.=. =|-+..+.
T Consensus 84 liV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g-~gi~~L~~- 161 (302)
T 2yv5_A 84 IIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG-EGIDELVD- 161 (302)
T ss_dssp EEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC-TTHHHHHH-
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC-CCHHHHHh-
Confidence 3445643 22 2356666666667899999999888864321 1112333333322 222222110 00011222
Q ss_pred ccccceeeeeccCCCCchhHHHHHHH
Q psy8456 147 RIGQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 147 Ri~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+.+.+..++||.||||||-| +.+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLl-n~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSIL-SRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHH-HHHH
T ss_pred hccCcEEEEECCCCCCHHHHH-HHHH
Confidence 235678899999999999754 4433
No 410
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=67.71 E-value=2 Score=41.72 Aligned_cols=24 Identities=46% Similarity=0.440 Sum_probs=18.5
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++..++||.||||||- ++.+.-
T Consensus 40 ~Ge~~~llGpnGsGKSTL-Lr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTI-LRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHHT
T ss_pred CCCEEEEECCCCCcHHHH-HHHHhC
Confidence 467888999999999985 455443
No 411
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=67.69 E-value=2 Score=41.74 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=19.0
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..++||.||||||- ++.+.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL-Lr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT-LLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHHTS
T ss_pred CCCEEEEEcCCCchHHHH-HHHHHCC
Confidence 467888999999999985 5555443
No 412
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=67.65 E-value=5.3 Score=36.58 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=34.6
Q ss_pred cccccccceeeeecc-CCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 144 FTKRIGQEKEVILGP-MFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 144 f~~Ri~geI~vi~G~-M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
-|.|.....-+|.|. .++|||+--+--++.+..+|++|..+||-.
T Consensus 15 ~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~ 60 (242)
T 3qxc_A 15 ENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIE 60 (242)
T ss_dssp ----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEE
T ss_pred hHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeee
Confidence 355555556788888 999999988888888889999999999843
No 413
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=67.51 E-value=31 Score=33.19 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHHHc-CceEEEEeeccCCCCCC-CceeeccCCceeeeecCChhhhc--ccCCCccEEEEccccChH
Q psy8456 10 INPYIVHFCRRIRRYQYA-NYRCMIVRYAKDDRYDT-EKVATHDQQKLTAVSAVELNKLI--PHTKDIDVIGIDEGQFFP 85 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~a-gkkvlv~Kp~iDtRy~~-~~I~Sr~G~~~~Ai~i~~l~ei~--~~~~~~dvV~IDEaQFF~ 85 (353)
=|||||-|=-.+..+... +.+++.+.-.+.-.... ....+...... ...+..+.+ ....++|+|++||.= +
T Consensus 133 GSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~---~~~~~~~~La~aL~~~PdvillDEp~--d 207 (356)
T 3jvv_A 133 GSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR---DTLGFSEALRSALREDPDIILVGEMR--D 207 (356)
T ss_dssp TSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT---TBSCHHHHHHHHTTSCCSEEEESCCC--S
T ss_pred CCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc---ccCCHHHHHHHHhhhCcCEEecCCCC--C
Confidence 489999775555555543 66666654333221111 01111100000 011222222 245789999999994 4
Q ss_pred -HHHHHHHHHHhCCCEEEEEecccc
Q psy8456 86 -DVVSFAESMANAGKIVVVAALDGT 109 (353)
Q Consensus 86 -dIv~l~~~l~~~G~~VivaGLd~D 109 (353)
+..+.+..+++.|..|++.-=+.+
T Consensus 208 ~e~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 208 LETIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred HHHHHHHHHHHhcCCEEEEEEccCh
Confidence 566666677888999877655443
No 414
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=67.39 E-value=8.5 Score=32.28 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCEEEEEecccccc-cCCchhHhhhhccccceEeccceecccccccccccccccceeeeeccCCCCch
Q psy8456 86 DVVSFAESMANAGKIVVVAALDGTFQ-RTGFNDILSLIPLAECVEKLTAVCMSCFRDAAFTKRIGQEKEVILGPMFSGKT 164 (353)
Q Consensus 86 dIv~l~~~l~~~G~~VivaGLd~DFr-~~pF~~~~~Ll~lAD~I~kL~AvC~~CG~~A~f~~Ri~geI~vi~G~M~sGKt 164 (353)
++.++++.+.+.+ .|+++|.-..+. ... ++....++.-.|..-+ +. . ....+...++++--+||.|
T Consensus 29 ~i~~~~~~i~~a~-~I~i~G~G~S~~~A~~---------~~~~l~~~g~~~~~~~-~~-~-~~~~~~~d~vi~iS~sG~t 95 (180)
T 1jeo_A 29 KLDSLIDRIIKAK-KIFIFGVGRSGYIGRC---------FAMRLMHLGFKSYFVG-ET-T-TPSYEKDDLLILISGSGRT 95 (180)
T ss_dssp HHHHHHHHHHHCS-SEEEECCHHHHHHHHH---------HHHHHHHTTCCEEETT-ST-T-CCCCCTTCEEEEEESSSCC
T ss_pred HHHHHHHHHHhCC-EEEEEeecHHHHHHHH---------HHHHHHHcCCeEEEeC-CC-c-cccCCCCCEEEEEeCCCCc
Confidence 5667777776644 788899854332 111 1111111111111111 11 1 1122334467777789999
Q ss_pred hHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 165 TELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 165 ~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
.++++.++..+.+|-+++.++...
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCC
Confidence 999999999999999999887643
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=67.28 E-value=3.4 Score=36.46 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=14.4
Q ss_pred ceeeeeccCCCCchhHHH
Q psy8456 151 EKEVILGPMFSGKTTELI 168 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li 168 (353)
.+..++|+|+|||||-.-
T Consensus 17 ~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CEEEEECSSCSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356789999999998543
No 416
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.19 E-value=2.1 Score=41.68 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=20.5
Q ss_pred cccc-ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
++.+ .|++..++||.||||||- ++.+.-+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl 52 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTL-LYTIAGI 52 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred EEEECCCCEEEEECCCCchHHHH-HHHHhcC
Confidence 3444 467888999999999985 4554433
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.07 E-value=1.9 Score=41.39 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=22.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHhCCEEEE
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMI 183 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~ 183 (353)
.++...++||.||||||-|---+.-+......+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 35678899999999998654444333333333333
No 418
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=66.90 E-value=2.2 Score=41.68 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=19.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..++||.||||||- ++.+.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL-Lr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTT-LRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHH-HHHHHTS
T ss_pred CCCEEEEECCCCcHHHHH-HHHHHcC
Confidence 467888999999999985 5555443
No 419
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=66.47 E-value=2.2 Score=41.68 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=19.1
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..++||.||||||- ++.+.-+
T Consensus 36 ~Ge~~~llGpnGsGKSTL-Lr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTT-LRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred CCCEEEEECCCCChHHHH-HHHHHcC
Confidence 467888999999999984 5555443
No 420
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=66.01 E-value=2.5 Score=40.49 Aligned_cols=25 Identities=12% Similarity=-0.215 Sum_probs=20.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQY 176 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~ 176 (353)
.-+++||.|+|||+-.-..++..+.
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999877777776654
No 421
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=65.98 E-value=2.3 Score=41.86 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=19.2
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..++||.|||||| |++.+.-+
T Consensus 28 ~Ge~~~llGpsGsGKST-LLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKST-LLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHH-HHHHHHTS
T ss_pred CCCEEEEEcCCCchHHH-HHHHHHcC
Confidence 46788899999999998 45555443
No 422
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.89 E-value=8.8 Score=40.15 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=37.6
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHh-CCEEEEEeeecCCCCCCCceeeccCcccceeecccHhhhcccCCCccEEEEecc
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYA-NYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEG 231 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~-~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~~i~IDE~ 231 (353)
-+++||.|+||| +|.+.+.++... +..++.+.-+. |......+ .| .+.+.+. ...+.++++||+
T Consensus 524 ~Ll~Gp~GtGKT-~lA~ala~~l~~~~~~~i~i~~s~---~~~~~~~~-~~---------~l~~~~~-~~~~~vl~lDEi 588 (758)
T 3pxi_A 524 FIFLGPTGVGKT-ELARALAESIFGDEESMIRIDMSE---YMEKHSTS-GG---------QLTEKVR-RKPYSVVLLDAI 588 (758)
T ss_dssp EEEESCTTSSHH-HHHHHHHHHHHSCTTCEEEEEGGG---GCSSCCCC-------------CHHHHH-HCSSSEEEEECG
T ss_pred EEEECCCCCCHH-HHHHHHHHHhcCCCcceEEEechh---cccccccc-cc---------hhhHHHH-hCCCeEEEEeCc
Confidence 678999999997 567777776543 45555444321 11111111 11 1111111 245789999999
Q ss_pred ccc
Q psy8456 232 QFV 234 (353)
Q Consensus 232 QF~ 234 (353)
+.+
T Consensus 589 ~~~ 591 (758)
T 3pxi_A 589 EKA 591 (758)
T ss_dssp GGS
T ss_pred ccc
Confidence 985
No 423
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=65.84 E-value=13 Score=34.10 Aligned_cols=30 Identities=7% Similarity=-0.073 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHHHHHH---HcCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRIRRYQ---YANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~---~agkkvlv~Kp~ 37 (353)
..-+|||...+.-+...- ..+.+++++-|.
T Consensus 52 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 52 QSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 456899987665554332 256789999995
No 424
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=65.60 E-value=5.3 Score=41.10 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=24.3
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhC-CEEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYAN-YRCMIVR 185 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~-~~~~~~k 185 (353)
+.++.|+|+|||||-.-.-.+++...| +.+.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 457899999999986555555566667 7666554
No 425
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.59 E-value=3.8 Score=34.63 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=14.1
Q ss_pred eeeeeccCCCCchhHHHH
Q psy8456 152 KEVILGPMFSGKTTELIR 169 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~ 169 (353)
+-.|.|+++|||||-.-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 457899999999985433
No 426
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=65.57 E-value=5.3 Score=39.48 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=24.6
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.+.+++|.|+|||||-.-+-.+.+...+..+..+.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 35688999999999976555555555666555543
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=65.55 E-value=3.2 Score=38.48 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=30.2
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH------------hC----CEEEEEeeec
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY------------AN----YRCMIVRYAK 188 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~------------~~----~~~~~~k~~~ 188 (353)
+.+.+|+|+.+||||+-+++.+.+.+. .| .+|+++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 568899999999999999998877532 23 6788776543
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.32 E-value=2.8 Score=37.06 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=16.3
Q ss_pred eeeeeccCCCCchhHHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..++.|+++|||||.+-.-...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999965444333
No 429
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=65.29 E-value=5.2 Score=41.96 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=26.0
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.+.++.|+|+|||||-.-.-..++...|..++.+.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 35689999999999966555555566788777653
No 430
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=65.11 E-value=3.7 Score=39.06 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=21.2
Q ss_pred cccc-ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
++.+ .|+...|+||.||||||-|---+.-+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3444 46788899999999998655444444
No 431
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=65.06 E-value=12 Score=41.54 Aligned_cols=29 Identities=3% Similarity=-0.289 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeec
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYA 37 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~ 37 (353)
.-||||+-.+-.+......|.+++++-|.
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~Pt 130 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPT 130 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEech
Confidence 45899997777766666788999999994
No 432
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=64.96 E-value=2.5 Score=37.62 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=17.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+.+.-|+||.+|||||-+ +.+..
T Consensus 25 g~iigI~G~~GsGKSTl~-k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC-EKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CEEEEEECCCCCCHHHHH-HHHHH
Confidence 456779999999999865 44433
No 433
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.77 E-value=5.1 Score=36.03 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=25.7
Q ss_pred eeeeeccCCCCchhH-HHHHHHHHHH------hCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTE-LIRRIRRYQY------ANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~-Li~~~~~~~~------~~~~~~~~k~~ 187 (353)
.-++.+|.|||||.- ++-.+..... .|.+++++-|.
T Consensus 93 ~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 458899999999976 3333333332 57889999885
No 434
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.09 E-value=3.8 Score=35.87 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=25.8
Q ss_pred ceeeeeccCCCCchhH-HHHHHHHHHH---hCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTE-LIRRIRRYQY---ANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~-Li~~~~~~~~---~~~~~~~~k~~ 187 (353)
+.-++.+|.|||||.. ++-.+..... .|.+++++-|.
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 3458899999999976 4444444332 46689999886
No 435
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=63.88 E-value=8.6 Score=35.17 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=23.5
Q ss_pred CCccEEEEccccChH---HHHHHHHHHHh--CCCEEEEEe
Q psy8456 71 KDIDVIGIDEGQFFP---DVVSFAESMAN--AGKIVVVAA 105 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~---dIv~l~~~l~~--~G~~VivaG 105 (353)
.+..+|+|||+|+++ ....+...+.+ .+..+|+..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 478999999999996 34455555554 356666543
No 436
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=63.81 E-value=19 Score=33.51 Aligned_cols=31 Identities=0% Similarity=-0.160 Sum_probs=26.3
Q ss_pred CCCchHHHHHHHHHHHHHcCceEEEEeeccC
Q psy8456 9 RINPYIVHFCRRIRRYQYANYRCMIVRYAKD 39 (353)
Q Consensus 9 ~~~GKSteLLrr~~ry~~agkkvlv~Kp~iD 39 (353)
.=+|||+-+++.+.+...+|.+|++|.-...
T Consensus 77 pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3489999999999998888899999987643
No 437
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=63.74 E-value=3.9 Score=37.99 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=25.4
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH-H--HhCCEEEEEeeec
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY-Q--YANYRCMIVRYAK 188 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~-~--~~~~~~~~~k~~~ 188 (353)
...++.+|+|||||...+-.+-.. . ..+.+++++-|..
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 456889999999998754444333 2 1234788888853
No 438
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=63.61 E-value=6.6 Score=36.13 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=31.1
Q ss_pred eeeecc-CCCCchhHHHHHHHHHHHhCCEEEEEeeec
Q psy8456 153 EVILGP-MFSGKTTELIRRIRRYQYANYRCMIVRYAK 188 (353)
Q Consensus 153 ~vi~G~-M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~ 188 (353)
-+|.|. .++|||+--+--++.+..+|++|..+||-.
T Consensus 29 i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~ 65 (251)
T 3fgn_A 29 LVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQ 65 (251)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeee
Confidence 578888 699999988888888899999999999843
No 439
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=63.49 E-value=1.9 Score=41.81 Aligned_cols=24 Identities=42% Similarity=0.396 Sum_probs=18.5
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++..++||.||||||- ++.+.-
T Consensus 25 ~Ge~~~llGpnGsGKSTL-Lr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLF-LELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHH-HHHHHT
T ss_pred CCCEEEEECCCCccHHHH-HHHHHc
Confidence 467888999999999985 555443
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=63.44 E-value=3.5 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
+...+++|+||||||| |++.+...
T Consensus 369 G~iI~LiG~sGSGKST-Lar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKST-LARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHH-HHHHHHHH
T ss_pred ceEEEEECCCCChHHH-HHHHHHHh
Confidence 4567899999999998 55555544
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=63.43 E-value=2.3 Score=41.54 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=15.8
Q ss_pred cceeeeeccCCCCchhHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIR 169 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~ 169 (353)
..+.+++|+|+|||||-.-+
T Consensus 258 ~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35778999999999986443
No 442
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=63.39 E-value=2.8 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=19.6
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..|+||.||||||- ++.+...
T Consensus 53 ~Gei~~IiGpnGaGKSTL-lr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTL-IRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred CCCEEEEEcCCCchHHHH-HHHHhcC
Confidence 467888999999999985 5666544
No 443
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.36 E-value=12 Score=34.31 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=16.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+--+++||.|+|||+ |.+.+.+
T Consensus 47 ~~vll~G~pGtGKT~-la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTL-SVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCcHHH-HHHHHHH
Confidence 346899999999995 5555544
No 444
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.35 E-value=8.3 Score=38.53 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=28.1
Q ss_pred CCccEEEEccccChH-----HHHHHHHHHHhCCCEEEEEecc
Q psy8456 71 KDIDVIGIDEGQFFP-----DVVSFAESMANAGKIVVVAALD 107 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~-----dIv~l~~~l~~~G~~VivaGLd 107 (353)
....+|+|||+|.+. .+..+.+.+...+.+|++.+=+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 567899999999984 2456667777788888888754
No 445
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=63.16 E-value=21 Score=33.09 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=20.7
Q ss_pred cCCCCchHHHHHHHHHHHHH---cCceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRYQY---ANYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~---agkkvlv~Kp~ 37 (353)
...-+|||.-.+.-+..... .+.+++++-|.
T Consensus 65 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 65 AKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp CCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 34569999876555543322 45689999995
No 446
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=63.06 E-value=2.5 Score=37.17 Aligned_cols=21 Identities=14% Similarity=-0.143 Sum_probs=15.2
Q ss_pred eeeeeccCCCCchhHHHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~ 172 (353)
+-.|.|+|||||||=--+.+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 567899999999975433333
No 447
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.73 E-value=2.9 Score=38.37 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=27.3
Q ss_pred CCccEEEEccccChH------HHHHHHHHHH---hCCCEEEEEecccccccC
Q psy8456 71 KDIDVIGIDEGQFFP------DVVSFAESMA---NAGKIVVVAALDGTFQRT 113 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~------dIv~l~~~l~---~~G~~VivaGLd~DFr~~ 113 (353)
..+.+|+|||+|.+. .+..+.+.+. ..++.+|+.|-+.++...
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 347799999999984 2445555553 336677888776655433
No 448
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=62.64 E-value=6.4 Score=40.23 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=24.6
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEe
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVR 185 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k 185 (353)
.-++.|+|+|||||-.-.-..++...|+.+.++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4568999999999865555555667787776554
No 449
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=62.62 E-value=5.7 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=28.0
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHh---CCEEEEE
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYA---NYRCMIV 184 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~---~~~~~~~ 184 (353)
+.+|+|.-|||||+-|+.++...... +.+++++
T Consensus 3 l~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~l 38 (1166)
T 3u4q_B 3 AEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFL 38 (1166)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEE
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 57899999999999999999877554 4788877
No 450
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=62.42 E-value=7.1 Score=32.33 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCccEEEEccccChH--HHHHHHHHHHhC--CCEEEEE
Q psy8456 71 KDIDVIGIDEGQFFP--DVVSFAESMANA--GKIVVVA 104 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~--dIv~l~~~l~~~--G~~Viva 104 (353)
.+..+|+|||+|.++ ....+...+... +..+++.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 138 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 457899999999995 344555555543 3344443
No 451
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=62.37 E-value=7.1 Score=34.81 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=25.2
Q ss_pred ceeeeeccCCCCchhHHHHHHH-HHHHh--CCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIR-RYQYA--NYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~-~~~~~--~~~~~~~k~~ 187 (353)
+.-++.+|+|||||...+--+- ..... +.+++++-|.
T Consensus 81 ~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 3467899999999987544443 33332 4568888886
No 452
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.22 E-value=3.6 Score=38.46 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=18.9
Q ss_pred ccccceeeeeccCCCCchhHHHHHHH
Q psy8456 147 RIGQEKEVILGPMFSGKTTELIRRIR 172 (353)
Q Consensus 147 Ri~geI~vi~G~M~sGKt~~Li~~~~ 172 (353)
.+..++.+|+||.+||||| |++.+.
T Consensus 21 ~~~~g~~~i~G~NGsGKS~-ll~ai~ 45 (322)
T 1e69_A 21 GFSDRVTAIVGPNGSGKSN-IIDAIK 45 (322)
T ss_dssp ECCSSEEEEECCTTTCSTH-HHHHHH
T ss_pred ecCCCcEEEECCCCCcHHH-HHHHHH
Confidence 3445589999999999996 555555
No 453
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=62.01 E-value=33 Score=33.56 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=45.0
Q ss_pred CCCCchHHHHHHHHHHHH--HcCceEEEEeeccCCC------------------------CCCCceeeccCCceeeeecC
Q psy8456 8 DRINPYIVHFCRRIRRYQ--YANYRCMIVRYAKDDR------------------------YDTEKVATHDQQKLTAVSAV 61 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~--~agkkvlv~Kp~iDtR------------------------y~~~~I~Sr~G~~~~Ai~i~ 61 (353)
-|=+|||+-+...+-..- ..|.+++++-|..++= .+...|.-.+|..+.+...
T Consensus 186 sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~~~~~I~f~nGs~i~~lsa- 264 (385)
T 2o0j_A 186 SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYAS- 264 (385)
T ss_dssp CSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEECSSEEEETTSCEEEEEEC-
T ss_pred cCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccCCccEEEeCCCCEEEEEEC-
Confidence 366899997666553322 2467899998866430 0111122223444444332
Q ss_pred ChhhhcccCCCccEEEEccccChH---HHHHHH
Q psy8456 62 ELNKLIPHTKDIDVIGIDEGQFFP---DVVSFA 91 (353)
Q Consensus 62 ~l~ei~~~~~~~dvV~IDEaQFF~---dIv~l~ 91 (353)
+...+ .-..++++++||++|++ ++.+.+
T Consensus 265 ~~~sl--rG~~~~~viiDE~a~~~~~~el~~al 295 (385)
T 2o0j_A 265 SPDAV--RGNSFAMIYIEDCAFIPNFHDSWLAI 295 (385)
T ss_dssp SHHHH--HTSCCSEEEEESGGGSTTHHHHHHHH
T ss_pred CCCCc--cCCCCCEEEechhhhcCCCHHHHHHH
Confidence 22222 12357899999999996 444443
No 454
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=61.71 E-value=9.2 Score=35.42 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=18.7
Q ss_pred CCCCchHHHHHHHHHHH-HH--cCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRIRRY-QY--ANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry-~~--agkkvlv~Kp~ 37 (353)
..-+|||.-.+.-+... .. .+.+++++-|.
T Consensus 72 pTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 72 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp CTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 45689998854444333 22 23479999984
No 455
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=61.50 E-value=6.1 Score=40.58 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.9
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHh-C---CEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYA-N---YRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~-~---~~~~~~k~~ 187 (353)
++.-+|.|+-|||||+-|+.++...... | .++++++++
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT 56 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 56 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEecc
Confidence 4456889999999999999998877543 3 688888654
No 456
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=61.38 E-value=75 Score=30.77 Aligned_cols=203 Identities=12% Similarity=0.115 Sum_probs=107.9
Q ss_pred CCCCchHHHHHHHHHHHHHcCce-EEEEeeccCCCCCCCceeeccCCceeeee-cCChhhhcccCCCccEEEEcc---cc
Q psy8456 8 DRINPYIVHFCRRIRRYQYANYR-CMIVRYAKDDRYDTEKVATHDQQKLTAVS-AVELNKLIPHTKDIDVIGIDE---GQ 82 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry~~agkk-vlv~Kp~iDtRy~~~~I~Sr~G~~~~Ai~-i~~l~ei~~~~~~~dvV~IDE---aQ 82 (353)
++..+||..-|.+- . .+.. |-++ |....|+- +++.. |.. ..++ ..++.+... .++|+++|=- .=
T Consensus 34 g~~~aKta~gllr~---~-~~~~iVgvi-~~~~Gkd~-ge~~~--g~~-~gipv~~d~~~al~--~~~d~lvig~a~~gg 102 (350)
T 2g0t_A 34 GTAHAKTTYGLLRH---S-RLFKPVCVV-AEHEGKMA-SDFVK--PVR-YDVPVVSSVEKAKE--MGAEVLIIGVSNPGG 102 (350)
T ss_dssp TSGGGHHHHHHHHH---C-SSEEEEEEE-SSCTTCBG-GGTCC---CC-SCCBEESSHHHHHH--TTCCEEEECCCSCCH
T ss_pred ChHHHHHHHHHHhh---C-CCCeEEEEe-ecCCCCcH-HHhhC--CCC-CCceeeCCHHHHHh--cCCCEEEEEecCCCC
Confidence 45678888655542 0 1133 3444 66555543 22222 222 1222 346776653 2488888854 33
Q ss_pred ChH-HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccc--eEeccceecc-ccccc-ccccccccceeeeec
Q psy8456 83 FFP-DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAEC--VEKLTAVCMS-CFRDA-AFTKRIGQEKEVILG 157 (353)
Q Consensus 83 FF~-dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~--I~kL~AvC~~-CG~~A-~f~~Ri~geI~vi~G 157 (353)
+|+ ...+.+..+.+.|+.|+ +||-. ++...+.|.++|.+ +.=+-....- .=.-+ ..-.++....-+++|
T Consensus 103 ~l~~~~~~~I~~Al~~G~nVv-sglh~-----~l~~~pel~~~A~~~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~G 176 (350)
T 2g0t_A 103 YLEEQIATLVKKALSLGMDVI-SGLHF-----KISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFG 176 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCEEE-ECCCC-------CCHHHHHHHHHHHTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcEE-eCChh-----hhhCCHHHHHHHHHCCCEEEEeCcCCCcccccccceeeecceEEEEec
Confidence 455 67777888889999975 78854 35556666666653 1111000000 00001 111222344567788
Q ss_pred c-CCCCchhHHHHHHHHHHHhCCEEEEEeeecCCCCCCCceeeccCcccceeecc----cHhhhccc--CCCccEEEEec
Q psy8456 158 P-MFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV----ELNKLIPH--TKDIDVIGIDE 230 (353)
Q Consensus 158 ~-M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R~~~~~i~s~~g~~~~a~~~~----~~~~~~~~--~~~~~~i~IDE 230 (353)
. |..|||+--..-.+..+.+|.++-.+++..... .+....|..+.++... ..+.++.. .+++|+++| |
T Consensus 177 TDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~----li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ivV-E 251 (350)
T 2g0t_A 177 TDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGI----LIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFV-E 251 (350)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHH----HTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSEEEE-E
T ss_pred CCCCccCccHHHHHHHHHHhcCCeEEEEccCceee----eeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCEEEE-c
Confidence 7 899999988877788899999998877643110 1112234444444433 33333332 367777765 6
Q ss_pred cc
Q psy8456 231 GQ 232 (353)
Q Consensus 231 ~Q 232 (353)
+|
T Consensus 252 Gq 253 (350)
T 2g0t_A 252 GQ 253 (350)
T ss_dssp CC
T ss_pred cC
Confidence 66
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.27 E-value=7.5 Score=38.96 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=25.4
Q ss_pred ccceeeeeccCCCCchhHHHHHH-HHHHHhCCEEEEEe
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRI-RRYQYANYRCMIVR 185 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~-~~~~~~~~~~~~~k 185 (353)
.|+...++||.||||||-+..-+ .-....+..++.+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46788999999999999877742 33333344455543
No 458
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=60.87 E-value=3.2 Score=40.81 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=18.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.|++..++||.||||||-| +.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLL-r~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLL-SAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHH-HHHHT
T ss_pred CCCEEEEECCCCChHHHHH-HHHhC
Confidence 4678889999999999855 55443
No 459
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=60.42 E-value=1.9 Score=41.75 Aligned_cols=29 Identities=41% Similarity=0.415 Sum_probs=20.5
Q ss_pred cccc-ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
|+.+ .|++..++||.||||||- ++.+.-+
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl 54 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTF-MRIIAGL 54 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHH-HHHHHTS
T ss_pred EEEECCCCEEEEECCCCCcHHHH-HHHHhCC
Confidence 3444 467888999999999985 4554433
No 460
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.37 E-value=3.2 Score=35.80 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=25.1
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH-HH--hCCEEEEEeee
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY-QY--ANYRCMIVRYA 187 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~-~~--~~~~~~~~k~~ 187 (353)
..-++.+|+|||||...+-.+-.. .. .+.+++++-|.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 345789999999998744433332 22 35688988886
No 461
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=59.89 E-value=3.4 Score=39.05 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=18.6
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+.+..|+||.||||||-+ +.+...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~-~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA-RVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCEEEEEECCCCchHHHHH-HHHHhh
Confidence 3567789999999999865 444444
No 462
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=59.56 E-value=3.6 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.6
Q ss_pred cceeeeeccCCCCchhHH
Q psy8456 150 QEKEVILGPMFSGKTTEL 167 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~L 167 (353)
+....++|+.||||||-|
T Consensus 26 ~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445689999999999854
No 463
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.48 E-value=26 Score=30.64 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.5
Q ss_pred CCCccEEEEccccCh
Q psy8456 70 TKDIDVIGIDEGQFF 84 (353)
Q Consensus 70 ~~~~dvV~IDEaQFF 84 (353)
..++++|+|||||-+
T Consensus 172 ~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 172 LEFCKYIVLDEADRM 186 (253)
T ss_dssp CTTCCEEEEETHHHH
T ss_pred hhhCCEEEEeCHHHH
Confidence 356889999999965
No 464
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=59.28 E-value=4.4 Score=35.34 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=25.2
Q ss_pred eeeeeccCCCCchhH-HHHHHHHHH--HhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTE-LIRRIRRYQ--YANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~-Li~~~~~~~--~~~~~~~~~k~~ 187 (353)
..++.+|+|||||.. ++-.+.+.. ..+.+++++-|.
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 357899999999977 444444432 245789999886
No 465
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.08 E-value=9 Score=37.15 Aligned_cols=31 Identities=0% Similarity=-0.250 Sum_probs=23.1
Q ss_pred cCCCCchHHHHHHHHHHHHHc-----CceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRYQYA-----NYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry~~a-----gkkvlv~Kp~ 37 (353)
+..-+|||...+.-+...... +.+++++-|.
T Consensus 29 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 29 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred cCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 456799998877666555444 7889999995
No 466
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.98 E-value=9 Score=39.87 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=16.8
Q ss_pred ceeeeeccCCCCchhHHHHHHHHH
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.--+++||.|+|||+-+-..+...
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 345899999999997544444443
No 467
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=58.88 E-value=3.8 Score=39.15 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=20.8
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHH
Q psy8456 146 KRIGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 146 ~Ri~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.-...++.+|+|+.|||||+ |+..+.-
T Consensus 21 i~f~~gl~vi~G~NGaGKT~-ileAI~~ 47 (371)
T 3auy_A 21 IKFEKGIVAIIGENGSGKSS-IFEAVFF 47 (371)
T ss_dssp EECCSEEEEEEECTTSSHHH-HHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHH-HHHHHHH
Confidence 33456899999999999996 4666664
No 468
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=58.42 E-value=7.3 Score=33.46 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHcCceEEEEeecc
Q psy8456 10 INPYIVHFCRRIRRYQYANYRCMIVRYAK 38 (353)
Q Consensus 10 ~~GKSteLLrr~~ry~~agkkvlv~Kp~i 38 (353)
=.||||=-+.-+..+..+|++|++++|..
T Consensus 12 GvGKTt~a~nLa~~la~~G~rVll~dp~~ 40 (224)
T 1byi_A 12 EVGKTVASCALLQAAKAAGYRTAGYKPVA 40 (224)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEccee
Confidence 47999999999999999999999999854
No 469
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=58.25 E-value=15 Score=32.10 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHHH-H--HcCceEEEEeec
Q psy8456 8 DRINPYIVHFCRRIRRY-Q--YANYRCMIVRYA 37 (353)
Q Consensus 8 ~~~~GKSteLLrr~~ry-~--~agkkvlv~Kp~ 37 (353)
..-+|||...+--+... . ..+.+++++-|.
T Consensus 75 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 75 QSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 34589998754444332 2 246789999995
No 470
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=58.23 E-value=7.7 Score=41.21 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=25.1
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH-h--CCEEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY-A--NYRCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~-~--~~~~~~~k~~ 187 (353)
++..++.||.||||||.|-..+..... . |.+++++.|.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 456789999999999943333222221 2 6678888774
No 471
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.22 E-value=8.7 Score=35.68 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=0.0
Q ss_pred eeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecCCC--------------------CCCCceeeccCcccceeecccH
Q psy8456 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDR--------------------YDTEKVSTHDQQKLTAVSAVEL 213 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D~R--------------------~~~~~i~s~~g~~~~a~~~~~~ 213 (353)
+++|+.|+|||+-.-...+.....+...+.+..+.-.. .-.+.+...+|
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~----------- 97 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG----------- 97 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTT-----------
T ss_pred EEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCC-----------
Q ss_pred hhhcccCCCccEEEEecccccceecCCccchhhhhhhhccCCCCCcchHHHHHHHhhccCCCCCCCCccHHHHHHHHHhC
Q psy8456 214 NKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAESMANA 293 (353)
Q Consensus 214 ~~~~~~~~~~~~i~IDE~QF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 293 (353)
.+++|||++.+ +.+....|.++-+ +.
T Consensus 98 ----------g~L~LDEi~~l-----------------------~~~~q~~Ll~~l~---------------------~~ 123 (304)
T 1ojl_A 98 ----------GTLFLDEIGDI-----------------------SPLMQVRLLRAIQ---------------------ER 123 (304)
T ss_dssp ----------SEEEEESCTTC-----------------------CHHHHHHHHHHHH---------------------SS
T ss_pred ----------CEEEEeccccC-----------------------CHHHHHHHHHHHh---------------------cC
Q ss_pred C-------------CEEEEEe
Q psy8456 294 G-------------KIVVVAA 301 (353)
Q Consensus 294 g-------------~~Vi~~g 301 (353)
. ..||+++
T Consensus 124 ~~~~~g~~~~~~~~~riI~at 144 (304)
T 1ojl_A 124 EVQRVGSNQTISVDVRLIAAT 144 (304)
T ss_dssp BCCBTTBCCCCBCCCEEEEEE
T ss_pred EeeecCCcccccCCeEEEEec
No 472
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=58.16 E-value=4.9 Score=36.87 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.2
Q ss_pred eeeccCCCCchhHHHHHHHHH
Q psy8456 154 VILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~ 174 (353)
-++||++|||||..-+-..+|
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred eeECCCCCCHHHHHHHHHHHh
Confidence 379999999999877766665
No 473
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.10 E-value=2.9 Score=38.70 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=25.3
Q ss_pred CCccEEEEccccChH-H-HHHHHHHH---Hh---CCCEEEEEecccc
Q psy8456 71 KDIDVIGIDEGQFFP-D-VVSFAESM---AN---AGKIVVVAALDGT 109 (353)
Q Consensus 71 ~~~dvV~IDEaQFF~-d-Iv~l~~~l---~~---~G~~VivaGLd~D 109 (353)
.++.+|+|||+|.++ + +..+...+ .. .++.||+.+=+.+
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 457799999999995 3 33444444 33 5777777664443
No 474
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=58.07 E-value=7 Score=36.34 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.2
Q ss_pred cceeeeeccCCCCchhHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
+.+..|+||.+|||||-+ +.+..
T Consensus 80 g~iigI~G~~GsGKSTl~-~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA-RVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHH-HHHHH
T ss_pred CEEEEEECCCCCCHHHHH-HHHHH
Confidence 456779999999999865 44443
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=57.87 E-value=4.9 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.8
Q ss_pred eeeeeccCCCCchhHHH
Q psy8456 152 KEVILGPMFSGKTTELI 168 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li 168 (353)
+..++|+|+|||||-.-
T Consensus 5 ~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45789999999998543
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=57.85 E-value=4.9 Score=33.94 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=14.7
Q ss_pred eeeeeccCCCCchhHHHHH
Q psy8456 152 KEVILGPMFSGKTTELIRR 170 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~ 170 (353)
..+++|+.+|||||-|-+-
T Consensus 31 kv~lvG~~g~GKSTLl~~l 49 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3478999999999865443
No 477
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.81 E-value=10 Score=35.27 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=20.8
Q ss_pred cCCCCchHHHHHHHHHHH-HH--cCceEEEEeec
Q psy8456 7 DDRINPYIVHFCRRIRRY-QY--ANYRCMIVRYA 37 (353)
Q Consensus 7 ~~~~~GKSteLLrr~~ry-~~--agkkvlv~Kp~ 37 (353)
...-+|||...+.-+... .. .+.+++++-|.
T Consensus 84 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 84 AQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 345689998855544433 22 56789999995
No 478
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=57.69 E-value=6.6 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.4
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee
Q psy8456 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA 187 (353)
Q Consensus 152 I~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~ 187 (353)
..+++|..+|||||-+.+-+..... ..++.++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~-~~~~~~i~~d 74 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKD-KYKIACIAGD 74 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-TCCEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc-CCeEEEEECC
Confidence 4578899999999887777766433 3556555543
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=57.65 E-value=5 Score=33.83 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.1
Q ss_pred eeeeccCCCCchhHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRR 170 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~ 170 (353)
.+++|+.+|||||-|-+-
T Consensus 8 v~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 468999999999855443
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=57.28 E-value=2.8 Score=39.78 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=20.0
Q ss_pred cccc-ccceeeeeccCCCCchhHHHHHHHH
Q psy8456 145 TKRI-GQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 145 ~~Ri-~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
|+.+ .|+...|+||.||||||-| +.+-+
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl-~ll~g 102 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTIL-RLLFR 102 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHH-HHHTT
T ss_pred eEEEcCCCEEEEECCCCchHHHHH-HHHHc
Confidence 3444 4678889999999999865 44433
No 481
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=57.22 E-value=26 Score=38.01 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=27.8
Q ss_pred ccCCCCchHHHHHHHHHHHHHcCc--eEEEEeec
Q psy8456 6 RDDRINPYIVHFCRRIRRYQYANY--RCMIVRYA 37 (353)
Q Consensus 6 ~~~~~~GKSteLLrr~~ry~~agk--kvlv~Kp~ 37 (353)
-|+--+|||...+..++.+...|+ ++|++-|.
T Consensus 176 ad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~ 209 (968)
T 3dmq_A 176 ADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE 209 (968)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH
Confidence 466779999999999999888876 89999994
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=57.15 E-value=3.9 Score=40.95 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.7
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHH
Q psy8456 149 GQEKEVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 149 ~geI~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.|++..|+||.+|||||- ++.+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTL-lr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSL-SRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHH-HHHHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhCc
Confidence 467889999999999985 5555555
No 483
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=56.89 E-value=4.4 Score=39.29 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=19.9
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHH
Q psy8456 146 KRIGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 146 ~Ri~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
..+..++.+++||.+||||| |++.+.-
T Consensus 22 ~~~~~g~~~i~G~nG~GKtt-ll~ai~~ 48 (359)
T 2o5v_A 22 LNFPEGVTGIYGENGAGKTN-LLEAAYL 48 (359)
T ss_dssp EECCSEEEEEECCTTSSHHH-HHHHHHH
T ss_pred EEEcCCeEEEECCCCCChhH-HHHHHHH
Confidence 33445589999999999997 5666654
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=56.80 E-value=6.2 Score=35.46 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=21.2
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHH
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQY 176 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~ 176 (353)
+..-++.|+.+|||||..-.-..++..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 556788999999999987776666543
No 485
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=56.73 E-value=5.4 Score=32.69 Aligned_cols=20 Identities=50% Similarity=0.629 Sum_probs=16.3
Q ss_pred eeeeccCCCCchhHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~ 173 (353)
-+++|+.++||||-+ +.+.+
T Consensus 17 i~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHh
Confidence 478999999999887 76654
No 486
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=56.51 E-value=15 Score=30.86 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=33.4
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeeecC
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKD 189 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~~D 189 (353)
+...++++--+||+|.++++.++..+.+|-+++.++...+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3445777888999999999999999999999998876543
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.45 E-value=11 Score=34.92 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=24.7
Q ss_pred ceeeeeccCCCCchhHHHHHHHHHHHh--------CCEEEEEe
Q psy8456 151 EKEVILGPMFSGKTTELIRRIRRYQYA--------NYRCMIVR 185 (353)
Q Consensus 151 eI~vi~G~M~sGKt~~Li~~~~~~~~~--------~~~~~~~k 185 (353)
..-+++||-|+|||+-+-..++..... +..++.+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 356899999999998765555555444 66666554
No 488
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=56.38 E-value=6.4 Score=35.90 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCcchHHHHHHHhhccCCCCCCCCc----cHHHHHHHHHhCCCEEEEEecc
Q psy8456 256 PIKRSPFKTLANENAALNVPPPPEFP----DVVSFAESMANAGKIVVVAALD 303 (353)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~f~----~~~~~~~~~~~~g~~Vi~~gLd 303 (353)
.+....|..+++.+++ .| .|++.-++++..+-.+++-|=|
T Consensus 94 ~ir~~~v~~~~s~va~--------~~~vr~~l~~~qr~~a~~~~~~V~~GRd 137 (233)
T 3r20_A 94 EIRGDAVTGAVSAVSA--------VPAVRTRLVDIQRKLATEGGRVVVEGRD 137 (233)
T ss_dssp GGGSHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTSSSCEEEEESS
T ss_pred hhcchHHHHHHHHHhc--------chHHHHHHHHHHHHHHHhcCcEEEeccc
Confidence 3566778888777773 43 4677778888772345555643
No 489
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.37 E-value=4.8 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=15.8
Q ss_pred eeeeccCCCCchhHHHHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRIRRY 174 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~ 174 (353)
.+++||.|+||||- ++.+...
T Consensus 52 ~ll~G~~G~GKTtl-~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHL-ARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHH
Confidence 68999999999965 4554443
No 490
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=56.28 E-value=11 Score=38.23 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=35.1
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEEeee-cCCCCCCCceeeccCcccceeecccHhhhcccC--CCccEEEEe
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYA-KDDRYDTEKVSTHDQQKLTAVSAVELNKLIPHT--KDIDVIGID 229 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~k~~-~D~R~~~~~i~s~~g~~~~a~~~~~~~~~~~~~--~~~~~i~ID 229 (353)
.+++||.|+|||+ |++.+... .+...+.+... +...+ .| .....+..+.... ..+.+++||
T Consensus 67 vLL~GppGtGKTt-LaraIa~~--~~~~~i~i~g~~~~~~~--------~g-----~~~~~v~~lfq~a~~~~p~il~ID 130 (499)
T 2dhr_A 67 VLLVGPPGVGKTH-LARAVAGE--ARVPFITASGSDFVEMF--------VG-----VGAARVRDLFETAKRHAPCIVFID 130 (499)
T ss_dssp EEEECSSSSSHHH-HHHHHHHH--TTCCEEEEEGGGGTSSC--------TT-----HHHHHHHHHTTTSSSSSSCEEEEE
T ss_pred EEEECCCCCCHHH-HHHHHHHH--hCCCEEEEehhHHHHhh--------hh-----hHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6899999999985 55655543 23333333221 11100 01 0111233333332 346899999
Q ss_pred ccccc
Q psy8456 230 EGQFV 234 (353)
Q Consensus 230 E~QF~ 234 (353)
|++.+
T Consensus 131 EId~l 135 (499)
T 2dhr_A 131 EIDAV 135 (499)
T ss_dssp CGGGT
T ss_pred hHHHH
Confidence 99975
No 491
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=56.28 E-value=5.7 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.2
Q ss_pred eeeeccCCCCchhHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRR 170 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~ 170 (353)
-+++|+.++||||-+-+-
T Consensus 6 i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478999999999865443
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=55.97 E-value=11 Score=36.00 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=47.5
Q ss_pred CccEEEEccccChH-HHHHHHHHHHhCCCEEEEEecccccccCCchhHhhhhccccc----eEeccceeccccccccccc
Q psy8456 72 DIDVIGIDEGQFFP-DVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAEC----VEKLTAVCMSCFRDAAFTK 146 (353)
Q Consensus 72 ~~dvV~IDEaQFF~-dIv~l~~~l~~~G~~VivaGLd~DFr~~pF~~~~~Ll~lAD~----I~kL~AvC~~CG~~A~f~~ 146 (353)
+.-||++=.+.--+ ++.+.++ +.|++|+..-+. .+..+..|..+-+. -.-+++.|.
T Consensus 80 ~~P~IIltrg~~~peelie~A~---~~~IPVL~T~~~------ts~~~~~l~~~l~~~~~~~~~~H~~~v---------- 140 (314)
T 1ko7_A 80 ETPAIIVTRDLEPPEELIEAAK---EHETPLITSKIA------TTQLMSRLTTFLEHELARTTSLHGVLV---------- 140 (314)
T ss_dssp TCCCEEECTTCCCCHHHHHHHH---HTTCCEEECCSC------HHHHHHHHHHHHHHHTCEEEEEESEEE----------
T ss_pred CCCEEEEeCCCCCCHHHHHHHH---HCCCeEEEECCc------hhHHHHHHHHHHHHhhccceeeeEEEE----------
Confidence 34455554444333 5555544 458998876653 24444444432111 133444442
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHH
Q psy8456 147 RIGQEKEVILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 147 Ri~geI~vi~G~M~sGKt~~Li~~~~~ 173 (353)
.+.+.-.++.|+.++||||-.+.-+.+
T Consensus 141 ~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 141 DVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 234556789999999999887776654
No 493
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=55.95 E-value=6.3 Score=43.96 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=31.0
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHhCC------EEEEEeee
Q psy8456 150 QEKEVILGPMFSGKTTELIRRIRRYQYANY------RCMIVRYA 187 (353)
Q Consensus 150 geI~vi~G~M~sGKt~~Li~~~~~~~~~~~------~~~~~k~~ 187 (353)
++.-++.|+-|||||+-|++|+-+.-..+. ++++++++
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 456689999999999999999888766654 78888774
No 494
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.91 E-value=6 Score=35.01 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=18.7
Q ss_pred eeeeccCCCCchhHHHHHHHHHHHhCCEEEEE
Q psy8456 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIV 184 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~~~~~~~~~~~~~~ 184 (353)
.+++||+|+||||- ++.+.+. .+..++.+
T Consensus 48 vll~G~~GtGKT~l-a~~la~~--~~~~~~~i 76 (257)
T 1lv7_A 48 VLMVGPPGTGKTLL-AKAIAGE--AKVPFFTI 76 (257)
T ss_dssp EEEECCTTSCHHHH-HHHHHHH--HTCCEEEE
T ss_pred EEEECcCCCCHHHH-HHHHHHH--cCCCEEEE
Confidence 58999999999964 4444433 24444433
No 495
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=55.86 E-value=57 Score=31.51 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=25.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHcC--ceEEEEeec
Q psy8456 6 RDDRINPYIVHFCRRIRRYQYAN--YRCMIVRYA 37 (353)
Q Consensus 6 ~~~~~~GKSteLLrr~~ry~~ag--kkvlv~Kp~ 37 (353)
-|+--+|||...+..+..+...+ +++|++-|.
T Consensus 62 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 95 (500)
T 1z63_A 62 ADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL 95 (500)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred EeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH
Confidence 36778999999998888777554 789999993
No 496
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=55.84 E-value=6.4 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=14.7
Q ss_pred eeeeccCCCCchhHHHHHH
Q psy8456 153 EVILGPMFSGKTTELIRRI 171 (353)
Q Consensus 153 ~vi~G~M~sGKt~~Li~~~ 171 (353)
.+++|+|+|||||-.-..+
T Consensus 27 i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5789999999998654333
No 497
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.84 E-value=9.3 Score=36.88 Aligned_cols=32 Identities=0% Similarity=-0.321 Sum_probs=23.8
Q ss_pred ccCCCCchHHHHHHHHHHHHHc-----CceEEEEeec
Q psy8456 6 RDDRINPYIVHFCRRIRRYQYA-----NYRCMIVRYA 37 (353)
Q Consensus 6 ~~~~~~GKSteLLrr~~ry~~a-----gkkvlv~Kp~ 37 (353)
.+..-+|||...+.-+..+... +.+++++-|.
T Consensus 25 ~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 25 CAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred EeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 3456799999877666555544 7889999995
No 498
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=55.79 E-value=3.3 Score=37.38 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=16.4
Q ss_pred eeeccCCCCchhHHHHHHHHHHHhCCEEE
Q psy8456 154 VILGPMFSGKTTELIRRIRRYQYANYRCM 182 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~~~~~~~~~~ 182 (353)
-++|.|+|||||-. +.+ ...|..|+
T Consensus 13 glTGgigsGKStv~-~~l---~~~g~~vi 37 (210)
T 4i1u_A 13 GLTGGIGSGKTTVA-DLF---AARGASLV 37 (210)
T ss_dssp EEECCTTSCHHHHH-HHH---HHTTCEEE
T ss_pred EEECCCCCCHHHHH-HHH---HHCCCcEE
Confidence 47999999999743 222 33566554
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=55.72 E-value=4 Score=37.66 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.3
Q ss_pred eeeccCCCCchhHHHHHHHH
Q psy8456 154 VILGPMFSGKTTELIRRIRR 173 (353)
Q Consensus 154 vi~G~M~sGKt~~Li~~~~~ 173 (353)
.++||.||||||-| +.+-.
T Consensus 6 ~lvG~nGaGKSTLl-n~L~g 24 (270)
T 3sop_A 6 MVVGQSGLGKSTLV-NTLFK 24 (270)
T ss_dssp EEEESSSSSHHHHH-HHHHH
T ss_pred EEECCCCCCHHHHH-HHHhC
Confidence 58999999999864 44443
No 500
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=55.69 E-value=21 Score=32.01 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred ccEEEEccccCh---------H--HHHHHHHHHHhC--CCEEEEEec
Q psy8456 73 IDVIGIDEGQFF---------P--DVVSFAESMANA--GKIVVVAAL 106 (353)
Q Consensus 73 ~dvV~IDEaQFF---------~--dIv~l~~~l~~~--G~~VivaGL 106 (353)
..+|+|||++.+ + -+..+.+.+.+. ++.||+.|-
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 569999999977 4 245666666655 566777663
Done!