RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8456
(353 letters)
>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional.
Length = 211
Score = 204 bits (522), Expect = 4e-65
Identities = 86/199 (43%), Positives = 120/199 (60%), Gaps = 47/199 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRY-DTEKVSTHDQQKLTAVSAV 211
VI+GPMFSGKTTEL+R ++R+ Y+ +C++++Y+KD RY D + +S+HD+Q L A+
Sbjct: 7 SVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVS 66
Query: 212 ELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+L +++ K+ DVI IDEGQF
Sbjct: 67 KLKEVLETAKNYDVIAIDEGQF-------------------------------------- 88
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 331
FPD+V F+E+ AN GKIV+VAALDGTFQR F IL+LIPLAE V KLTAVC
Sbjct: 89 --------FPDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVC 140
Query: 332 MSCFRDAAFTKRIGQEKEV 350
M C ++A+F+KRI Q +++
Sbjct: 141 MFCGKEASFSKRIVQSEQI 159
Score = 193 bits (491), Expect = 2e-60
Identities = 75/142 (52%), Positives = 107/142 (75%), Gaps = 3/142 (2%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRY-DTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIG 77
R ++R+ Y+ +C++++Y+KD RY D + +++HD+Q L A+ +L +++ K+ DVI
Sbjct: 23 RLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETAKNYDVIA 82
Query: 78 IDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVCMS 137
IDEGQFFPD+V F+E+ AN GKIV+VAALDGTFQR F IL+LIPLAE V KLTAVCM
Sbjct: 83 IDEGQFFPDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMF 142
Query: 138 CFRDAAFTKRIGQEK--EVILG 157
C ++A+F+KRI Q + E+I G
Sbjct: 143 CGKEASFSKRIVQSEQIELIGG 164
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 228 IDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEF 280
I + + +E+IGG DKY+A CR+C++ K + + A F
Sbjct: 153 IVQSEQIELIGGEDKYIATCRKCFRTKQ-LAEKELEKQDLVEFADFSNEENIF 204
>gnl|CDD|215828 pfam00265, TK, Thymidine kinase.
Length = 175
Score = 187 bits (476), Expect = 1e-58
Identities = 87/201 (43%), Positives = 113/201 (56%), Gaps = 49/201 (24%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV--SA 210
E+I+GPMFSGK+TELIRR+ RYQ A Y+C++++YA D+RY T KV THD + A
Sbjct: 4 ELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYGTGKVVTHDGISMEAKLIKT 63
Query: 211 VELNKLIPH-TKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANEN 269
L+ + + I V+GIDE QF
Sbjct: 64 SLLDDIKDIISNTIHVVGIDEAQF------------------------------------ 87
Query: 270 AALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTA 329
F D+V F E+MAN GKIV+VA LDG FQR F +IL+L+PLAE V KL A
Sbjct: 88 ----------FDDIVEFCETMANLGKIVIVAGLDGDFQRKPFGNILNLLPLAEKVTKLKA 137
Query: 330 VCMSCFRDAAFTKRIGQEKEV 350
VCM C++DA+FTKR+ EKE+
Sbjct: 138 VCMKCYKDASFTKRLNNEKEI 158
Score = 177 bits (452), Expect = 4e-55
Identities = 76/141 (53%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAV--SAVELNKLIPH-TKDIDV 75
RR+ RYQ A Y+C++++YA D+RY T KV THD + A L+ + + I V
Sbjct: 20 RRVYRYQLAQYKCVVIKYAIDNRYGTGKVVTHDGISMEAKLIKTSLLDDIKDIISNTIHV 79
Query: 76 IGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLTAVC 135
+GIDE QFF D+V F E+MAN GKIV+VA LDG FQR F +IL+L+PLAE V KL AVC
Sbjct: 80 VGIDEAQFFDDIVEFCETMANLGKIVIVAGLDGDFQRKPFGNILNLLPLAEKVTKLKAVC 139
Query: 136 MSCFRDAAFTKRIGQEKEVIL 156
M C++DA+FTKR+ EKE+IL
Sbjct: 140 MKCYKDASFTKRLNNEKEIIL 160
>gnl|CDD|235272 PRK04296, PRK04296, thymidine kinase; Provisional.
Length = 190
Score = 104 bits (262), Expect = 8e-27
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV---S 209
E I G M SGK+TEL++R Y+ + ++ + A DDRY KV + A+ S
Sbjct: 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSS 64
Query: 210 AVELNKLI-PHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANE 268
++ +LI + ID + IDE QF L E
Sbjct: 65 DTDIFELIEEEGEKIDCVLIDEAQF-------------------------------LDKE 93
Query: 269 NAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 328
VV AE + + G V+ LD F+ F L+ LA+ V +L
Sbjct: 94 Q-------------VVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140
Query: 329 AVCMSCFRDAAFTKRIGQEKEVRIE 353
A+C+ C R A +R+ E
Sbjct: 141 AICVHCGRKATMNQRLIDGGPAVYE 165
Score = 92.1 bits (230), Expect = 3e-22
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAV---SAVELNKLI-PHTKDID 74
+R Y+ + ++ + A DDRY KV + A+ S ++ +LI + ID
Sbjct: 21 QRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKID 80
Query: 75 VIGIDEGQFFPD--VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 132
+ IDE QF VV AE + + G V+ LD F+ F L+ LA+ V +L
Sbjct: 81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140
Query: 133 AVCMSCFRDAAFTKRIGQEKEVI 155
A+C+ C R A +R+ +
Sbjct: 141 AICVHCGRKATMNQRLIDGGPAV 163
Score = 33.9 bits (79), Expect = 0.057
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 228 IDEGQFVE-----VIGGSDKYMAVCRECYK 252
ID G V ++GG++ Y AVCR+ YK
Sbjct: 157 IDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186
>gnl|CDD|224352 COG1435, Tdk, Thymidine kinase [Nucleotide transport and
metabolism].
Length = 201
Score = 101 bits (253), Expect = 2e-25
Identities = 57/207 (27%), Positives = 76/207 (36%), Gaps = 50/207 (24%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAV---S 209
E I GPMFSGKT EL+RR RRY+ A + ++ + A D RY KVS+ AV S
Sbjct: 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPS 66
Query: 210 AVELNKLI---PHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLA 266
++ I +D + IDE QF
Sbjct: 67 DTDIFDEIAALHEKPPVDCVLIDEAQFF-------------------------------- 94
Query: 267 NENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEK 326
E V+ E G V+ LD F+ F L+ +A+ V K
Sbjct: 95 ----------DEELVYVL--NELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTK 142
Query: 327 LTAVCMSCFRDAAFTKRIGQEKEVRIE 353
L A+C C R A T R+ E
Sbjct: 143 LKAICNVCGRKATRTLRLINGGPAVYE 169
Score = 86.9 bits (216), Expect = 3e-20
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAV---SAVELNKLI---PHTKD 72
RR RRY+ A + ++ + A D RY KV++ AV S ++ I
Sbjct: 23 RRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP 82
Query: 73 IDVIGIDEGQFF-PDVVSFAESMANAGKI-VVVAALDGTFQRTGFNDILSLIPLAECVEK 130
+D + IDE QFF ++V +A+ I V+ LD F+ F L+ +A+ V K
Sbjct: 83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTK 142
Query: 131 LTAVCMSCFRDAAFTKRIGQEKEVI 155
L A+C C R A T R+ +
Sbjct: 143 LKAICNVCGRKATRTLRLINGGPAV 167
Score = 31.4 bits (72), Expect = 0.51
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 236 VIGGSDKYMAVCRECYKQK 254
+IGG++ Y A CR+ +K+
Sbjct: 174 LIGGNESYEARCRKHHKEP 192
>gnl|CDD|237071 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
Length = 314
Score = 36.3 bits (85), Expect = 0.020
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 25/77 (32%)
Query: 43 DTEKVATH----DQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQF-----FPDV---VSF 90
+KV + +Q+KL V+ E K I+EGQF P V +SF
Sbjct: 235 AVDKVYINFGKPNQKKLDEVTVSEAEKY-----------IEEGQFAPGSMLPKVEAAISF 283
Query: 91 AESMANAGKIVVVAALD 107
ES G+ ++ +L+
Sbjct: 284 VES--RPGRKAIITSLE 298
>gnl|CDD|131021 TIGR01966, RNasePH, ribonuclease PH. This bacterial enzyme,
ribonuclease PH, performs the final 3'-trimming and
modification of tRNA precursors. This model is
restricted absolutely to bacteria. Related families
outside the model include proteins described as probable
exosome complex exonucleases (rRNA processing) and
polyribonucleotide nucleotidyltransferases (mRNA
degradation). The most divergent member within the
family is RNase PH from Deinococcus radiodurans
[Transcription, RNA processing].
Length = 236
Score = 34.6 bits (80), Expect = 0.054
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 199 THDQQKLTAVS---AVELNKLIPHT--KDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQ 253
T + Q+L + V+L L T D DVI D G I G+ +A +
Sbjct: 86 TQEIQRLIGRALRAVVDLEALGERTIWIDCDVIQADGGTRTASITGAFVALADAISKLHK 145
Query: 254 KAPIKRSPFKT--------LANENAALNVPPPPEFPDVVSFAESMANAGKIVVV--AALD 303
+ +K SP + + + L++ + V M +G V V A +
Sbjct: 146 RGILKESPIRDFVAAVSVGIVDGEPVLDLDYEEDSAADVDMNVVMTGSGGFVEVQGTAEE 205
Query: 304 GTFQRTGFNDILSL 317
G F R N +L L
Sbjct: 206 GPFSRDELNKLLDL 219
>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat
present in Synaptotagmins 3, 5, 6, 9, and 10.
Synaptotagmin is a membrane-trafficking protein
characterized by a N-terminal transmembrane region, a
linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a
member of class 3 synaptotagmins, is located in the
brain and localized to the active zone and plasma
membrane. It functions as a Ca2+ sensor for fast
exocytosis. It, along with synaptotagmins 5,6, and 10,
has disulfide bonds at its N-terminus. Synaptotagmin 9,
a class 5 synaptotagmins, is located in the brain and
localized to the synaptic vesicles. It is thought to be
a Ca2+-sensor for dense-core vesicle exocytosis.
Previously all synaptotagmins were thought to be calcium
sensors in the regulation of neurotransmitter release
and hormone secretion, but it has been shown that not
all of them bind calcium. Of the 17 identified
synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10).
The function of the two C2 domains that bind calcium
are: regulating the fusion step of synaptic vesicle
exocytosis (C2A) and binding to
phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the
absence of calcium ions and to phosphatidylinositol
bisphosphate (PIP2) in their presence (C2B). C2B also
regulates also the recycling step of synaptic vesicles.
C2 domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the second C2
repeat, C2B, and has a type-I topology.
Length = 134
Score = 31.7 bits (72), Expect = 0.21
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 20/89 (22%)
Query: 235 EVIGGSDKYMAVCREC-----YKQKAPIKRSPFKTLANENAALNVPPPPEFPDVVSFAES 289
++ G SD Y+ V C K+K +K++ NE +VPP E+
Sbjct: 30 DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP-----------EN 78
Query: 290 MANAGKIVVVAALDGTFQRTGFNDILSLI 318
+ N I+ V D R G N+++ +
Sbjct: 79 VDNVSLIIAVVDYD----RVGHNELIGVC 103
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 30.9 bits (70), Expect = 1.0
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 54 KLTAVSAVELNKLIPHTKDIDVIGIDEGQFFPDVVSFAESMA 95
K ++VS + ++IP D++VI ID G +P+ +++ + A
Sbjct: 192 KDSSVSTLLAKEVIP---DLEVIFIDTGLEYPETINYVKDFA 230
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 29.6 bits (67), Expect = 2.6
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 240 SDKYMAVCRECYKQKAPIKRSPFKTLANENAALNVPPPPEF 280
SD+Y+++ Y Q P K + L PE
Sbjct: 64 SDEYLSLALSVYNQ-CPPKSTVKSPANCAPFTLLAKDLPEK 103
>gnl|CDD|165484 PHA03219, PHA03219, nuclear protein UL24; Provisional.
Length = 300
Score = 29.4 bits (66), Expect = 2.7
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 4 IERDDRINPYIVHFCRRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAV 61
+E D+ P ++ + Y Y C R A R E V + DQQK T + V
Sbjct: 45 LEADEDFKP------EDVKAWSY--YLCCQTRLAFVGRVVGEPVLSPDQQKKTLIILV 94
Score = 28.3 bits (63), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 171 IRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV 211
++ + Y Y C R A R E V + DQQK T + V
Sbjct: 56 VKAWSY--YLCCQTRLAFVGRVVGEPVLSPDQQKKTLIILV 94
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 28.7 bits (65), Expect = 3.2
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 25/81 (30%)
Query: 47 VATHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQFFPDVV----SF-------AESMA 95
+AT ++ K+ E ++ DI+V + + P+V +F AE+ A
Sbjct: 6 IATKNKGKVR-----EFKEIFEK-FDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAA 59
Query: 96 NA-GKIV-------VVAALDG 108
A K V V AL+G
Sbjct: 60 KALNKPVIADDSGLEVDALNG 80
>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed.
Length = 313
Score = 28.8 bits (65), Expect = 4.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 55 LTAVSAVELNKLIPHTKDIDVIGID-------EGQF-----FPDVVSFAESMANAGKIVV 102
LT V V LN P K +D + ++ EG F P +++ + N GK +
Sbjct: 233 LTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAI 292
Query: 103 VAALD 107
+A+L+
Sbjct: 293 IASLE 297
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 28.5 bits (64), Expect = 5.5
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 71 KDIDVIGIDEGQFFPDVVSFAESMANAGKIVVVAALDGTFQR----TGFNDILSLIPLAE 126
K +I + EG A+ + I + G QR + F+ +L+ A+
Sbjct: 212 KKHSIIIVAEGNIVGSAKEVAKKIEEKTGIETRVTVLGHTQRGGSPSAFDRVLASRLGAK 271
Query: 127 CVEKL 131
VE L
Sbjct: 272 AVELL 276
>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like. This is a family of
proteins carrying the LYR motif of family Complex1_LYR,
pfam05347, likely to be involved in Fe-S cluster
biogenesis in mitochondria.
Length = 61
Score = 26.0 bits (58), Expect = 6.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 167 LIRRIRRYQYANYRCMIVRYAKD 189
L+R R++ N+R I R +D
Sbjct: 10 LLRAARKFPDYNFREYIRRRIRD 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,250,216
Number of extensions: 1789288
Number of successful extensions: 1859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1843
Number of HSP's successfully gapped: 42
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)