RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8456
(353 letters)
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 99.8 bits (248), Expect = 3e-26
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 46/176 (26%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
EVI+GPM+SGK+ ELIRRIRR + A + + + D+RY E V +H +K AV+
Sbjct: 10 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN 69
Query: 213 LNKLIPHTKD-IDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+++ + ++ +VI IDE QF + D+ + + + +
Sbjct: 70 SREILKYFEEDTEVIAIDEVQFFD-----DEIVEIVNKIAES------------------ 106
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKL 327
G+ V+ A LD F+ F I L+ +AE V+K+
Sbjct: 107 ----------------------GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 140
Score = 80.9 bits (199), Expect = 3e-19
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKD-IDVIG 77
RRIRR + A + + + D+RY E V +H +K AV+ +++ + ++ +VI
Sbjct: 26 RRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIA 85
Query: 78 IDEGQFFPDVVS-FAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKL 131
IDE QFF D + +A +G+ V+ A LD F+ F I L+ +AE V+K+
Sbjct: 86 IDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 140
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 99.8 bits (248), Expect = 3e-26
Identities = 77/176 (43%), Positives = 98/176 (55%), Gaps = 47/176 (26%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAVE 212
+VILGPMFSGK+TEL+RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A
Sbjct: 5 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALPACL 63
Query: 213 LNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAAL 272
L + + VIGIDEGQF
Sbjct: 64 LRDVAQEALGVAVIGIDEGQF--------------------------------------- 84
Query: 273 NVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 328
FPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLT
Sbjct: 85 -------FPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 133
Score = 86.3 bits (213), Expect = 3e-21
Identities = 64/114 (56%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSAVELNKLIPHTKDIDVIGI 78
RR+RR+Q A Y+C++++YAKD RY + THD+ + A+ A L + + VIGI
Sbjct: 21 RRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALPACLLRDVAQEALGVAVIGI 79
Query: 79 DEGQFFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKLT 132
DEGQFFPD+V F E+MANAGK V+VAALDGTFQR F IL+L+PLAE V KLT
Sbjct: 80 DEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 133
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 97.5 bits (242), Expect = 2e-25
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 52/181 (28%)
Query: 153 EVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSA-- 210
E I GPMF+GKT ELIRR+ R +YA+ + ++ + D R + + L +V
Sbjct: 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVEVES 63
Query: 211 ----VELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLA 266
+ + VIGIDE QF +
Sbjct: 64 APEILNYIMSNSFNDETKVIGIDEVQFFD------------------------------- 92
Query: 267 NENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEK 326
+ A +A G +V+++ LD F+ F I L A+ + K
Sbjct: 93 --------------DRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK 138
Query: 327 L 327
L
Sbjct: 139 L 139
Score = 80.5 bits (198), Expect = 4e-19
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 19 RRIRRYQYANYRCMIVRYAKDDRYDTEKVATHDQQKLTAVSA------VELNKLIPHTKD 72
RR+ R +YA+ + ++ + D R + + L +V + +
Sbjct: 21 RRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 79
Query: 73 IDVIGIDEGQFFPD-VVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEKL 131
VIGIDE QFF D + A +A G +V+++ LD F+ F I L A+ + KL
Sbjct: 80 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 139
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 35.1 bits (81), Expect = 5e-04
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 228 IDEGQFVEVIGGSDKYMAVCRECYKQ 253
E + VEVIGG+DKY +VCR CY +
Sbjct: 17 GTEKE-VEVIGGADKYHSVCRLCYFK 41
Score = 35.1 bits (81), Expect = 6e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 133 AVCMSCFRDAAFTKRIGQEKEVIL 156
AVCM CFR+AA+TKR+G EKEV +
Sbjct: 1 AVCMECFREAAYTKRLGTEKEVEV 24
Score = 32.0 bits (73), Expect = 0.007
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 329 AVCMSCFRDAAFTKRIGQEKEV 350
AVCM CFR+AA+TKR+G EKEV
Sbjct: 1 AVCMECFREAAYTKRLGTEKEV 22
>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 49
Score = 35.2 bits (81), Expect = 6e-04
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 234 VEVIGGSDKYMAVCRECYK 252
V +IG + Y A CR+C+
Sbjct: 28 VVLIGAMESYEARCRKCHV 46
Score = 31.7 bits (72), Expect = 0.011
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 133 AVCMSCFRDAAFTKRIGQEKEVI 155
A+C+ C A T+R+ K
Sbjct: 1 AICVVCGNPATRTQRLINGKPAF 23
Score = 31.3 bits (71), Expect = 0.012
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 329 AVCMSCFRDAAFTKRIGQEKEVRIE 353
A+C+ C A T+R+ K +
Sbjct: 1 AICVVCGNPATRTQRLINGKPAFYD 25
>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 67
Score = 34.9 bits (80), Expect = 0.001
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 132 TAVCMSCFRDAAFTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDR 191
TA+C C +A + R K I Y V
Sbjct: 1 TAICNECGAEATHSLRKIDGKHAD-----YNDDIVKIGCQEFYSAVCRHHHKVPNRPYLN 55
Query: 192 YDTEKV 197
++E+
Sbjct: 56 SNSEEF 61
Score = 34.1 bits (78), Expect = 0.002
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 328 TAVCMSCFRDAAFTKRIGQEKEVRIE 353
TA+C C +A + R K
Sbjct: 1 TAICNECGAEATHSLRKIDGKHADYN 26
Score = 32.9 bits (75), Expect = 0.006
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 234 VEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANEN 269
+ IG + Y AVCR +K + P+ +E
Sbjct: 29 IVKIGCQEFYSAVCRHHHK----VPNRPYLNSNSEE 60
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.0 bits (66), Expect = 0.38
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIV 184
V +G SGKTT L RY NY+ V
Sbjct: 4 VFVGTAGSGKTT-LTGEFGRYLEDNYKVAYV 33
>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella
typhimurium [TaxId: 90371]}
Length = 229
Score = 29.6 bits (66), Expect = 0.51
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 192 YDTEKVSTHDQQKLTAVSAVELNKLIPHTKDIDVIGIDEGQFVEVIGGS 240
+ H + + +L+ ++ VIG+ EG +++V G
Sbjct: 158 FTNALPEGHKGET----REQRIRELLVVAPELTVIGLPEGNWIQVSNGQ 202
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.9 bits (63), Expect = 0.53
Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 8/167 (4%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV 211
+ +ILG +GKTT ++ R++ + + + + S
Sbjct: 7 RILILGLDGAGKTT-ILYRLQVGEVVTTIPT--IGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 212 ELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFKTLANENAA 271
+ D + +D + + +A+ E +KA + K +
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM- 122
Query: 272 LNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLI 318
E + + +I +A GT ++ +
Sbjct: 123 ----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.3 bits (64), Expect = 0.56
Identities = 14/125 (11%), Positives = 26/125 (20%), Gaps = 6/125 (4%)
Query: 144 FTKRIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQ 203
F K + ILG SGK+ L+ ++ R ++ ++ +
Sbjct: 6 FAKTV-----AILGGESSGKSV-LVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSD 59
Query: 204 KLTAVSAVELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFK 263
+ + ID
Sbjct: 60 YPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTI 119
Query: 264 TLANE 268
L N
Sbjct: 120 LLKNN 124
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.4 bits (62), Expect = 0.84
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 154 VILGPMFSGKTT--ELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTA 207
++ G GKTT + + +Y N + D YD E +
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 63
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 1.3
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHD 201
+ ++LG +GKTT ++ +++ Q + + Y K + D
Sbjct: 14 RILMLGLDAAGKTT-ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 62
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.0 bits (58), Expect = 2.2
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 154 VILGPMFSGKTT---ELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSA 210
+ +G SGK+T E I + + N + D K + + +T +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQF 65
Query: 211 VELNKLIPHTKDIDVIGID 229
++ + + I
Sbjct: 66 DTAKSILYGGDSVKGVIIS 84
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 2.5
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV 211
K + LG +GKTT L+ ++ + A + + + + + A
Sbjct: 2 KLLFLGLDNAGKTT-LLHMLKNDRLATLQPTW--HPTSEELAIGNIKFTTFDLGGHIQAR 58
Query: 212 ELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPI 257
L K + V +D + A+ + P
Sbjct: 59 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 104
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.9 bits (58), Expect = 3.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 144 FTKRIGQEKE---VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTH 200
F K G KE +ILG +GKTT ++ R++ + + I + Y K++
Sbjct: 8 FDKLWGSNKELRILILGLDGAGKTT-ILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVW 66
Query: 201 D 201
D
Sbjct: 67 D 67
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 4.0
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 10/174 (5%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSAV 211
K V LG +GKTT L+ ++ + + + + ++ + A
Sbjct: 15 KLVFLGLDNAGKTT-LLHMLKDDRLGQHVPT--LHPTSEELTIAGMTFTTFDLGGHIQAR 71
Query: 212 ELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPIKRSPFK-------T 264
+ K + V +D ++ ++ ++ + PI K +
Sbjct: 72 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 131
Query: 265 LANENAALNVPPPPEFPDVVSFAESMANAGKIVVVAALDGTFQRTGFNDILSLI 318
+ VS E A ++ + + L GF + I
Sbjct: 132 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 4.1
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 154 VILGPMFSGKTT---ELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVSA 210
+I G +GKT+ + + +Q+ ++ YDTE + ++K
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 68
Query: 211 VELNKLIPHTKDIDVIG 227
+ ++ + V
Sbjct: 69 DFMEPIMVSRGNHVVDY 85
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.1 bits (56), Expect = 5.1
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHD 201
K +I+G +GKTT ++ + + + I ++ + + D
Sbjct: 17 KVIIVGLDNAGKTT-ILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWD 65
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.8 bits (55), Expect = 6.2
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 154 VILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYD 193
V+ +GKT + +I +V
Sbjct: 11 VLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLS 50
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.8 bits (55), Expect = 6.9
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEK 196
+ ++LG +GKTT ++++ + K + K
Sbjct: 4 RLLMLGLDNAGKTT-ILKKFNGEDVDTISPTLGFNIKTLEHRGFK 47
>d2ob5a1 c.133.1.1 (A:1-147) Hypothetical protein Atu2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 147
Score = 25.6 bits (56), Expect = 7.1
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 91 AESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEK 130
++S+A + V +D ILS++PL ++
Sbjct: 35 SDSVARQTTVGKVLHIDNVSAARAMKAILSVLPLDTPLQP 74
Score = 25.6 bits (56), Expect = 7.1
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 287 AESMANAGKIVVVAALDGTFQRTGFNDILSLIPLAECVEK 326
++S+A + V +D ILS++PL ++
Sbjct: 35 SDSVARQTTVGKVLHIDNVSAARAMKAILSVLPLDTPLQP 74
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.8 bits (55), Expect = 7.6
Identities = 17/108 (15%), Positives = 28/108 (25%)
Query: 150 QEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLTAVS 209
Q K V++G +GKTT + R + Y + + T + TA
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 210 AVELNKLIPHTKDIDVIGIDEGQFVEVIGGSDKYMAVCRECYKQKAPI 257
+ I V + + PI
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 110
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.7 bits (55), Expect = 8.1
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 152 KEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDT 194
+ ++LG +GKTT L++++ ++ K +
Sbjct: 18 RILLLGLDNAGKTT-LLKQLASEDISHITPTQGFNIKSVQSQG 59
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.4 bits (54), Expect = 10.0
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 147 RIGQEKEVILGPMFSGKTTELIRRIRRYQYANYRCMIVRYAKDDRYDTEKVSTHDQQKLT 206
+I Q K V+LG GK++ ++R ++ + I + + + T
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 207 A 207
A
Sbjct: 63 A 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,341,184
Number of extensions: 63606
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 54
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)