BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8459
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
           K+L NLK +DLFN +VT +  YRE VF+LLP + YLDG+D  N EAP
Sbjct: 115 KKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAP 161


>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
 pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
          Length = 168

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
           K+L  LK +DLFN +VT + +YRE VF+LLP L YLDG+D ++ EAP
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163


>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
 pdb|2JE0|B Chain B, Crystal Structure Of Pp32
 pdb|2JE0|C Chain C, Crystal Structure Of Pp32
 pdb|2JE0|D Chain D, Crystal Structure Of Pp32
 pdb|2JE0|E Chain E, Crystal Structure Of Pp32
 pdb|2JE0|F Chain F, Crystal Structure Of Pp32
 pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
          Length = 149

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149


>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
           Arm Dynein Light Chain 1
          Length = 199

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 22  YREKVFELLPNLKYLDGF 39
           YR +V + LPNLK LDG 
Sbjct: 166 YRIEVVKRLPNLKKLDGM 183


>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
           Chain 1
          Length = 198

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 22  YREKVFELLPNLKYLDGF 39
           YR +V + LPNLK LDG 
Sbjct: 165 YRIEVVKRLPNLKKLDGM 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.133    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,996,037
Number of Sequences: 62578
Number of extensions: 45467
Number of successful extensions: 124
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)