Query psy8459
Match_columns 106
No_of_seqs 136 out of 642
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:26:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.4 2.2E-13 4.8E-18 101.9 2.9 48 2-49 111-158 (175)
2 KOG2739|consensus 99.1 4.3E-11 9.3E-16 95.3 2.5 54 1-54 113-166 (260)
3 KOG1644|consensus 99.0 1.6E-11 3.5E-16 96.1 -2.0 47 1-47 110-156 (233)
4 KOG2123|consensus 98.4 4.7E-08 1E-12 80.6 0.7 46 1-46 85-132 (388)
5 smart00446 LRRcap occurring C- 98.1 1.7E-06 3.7E-11 47.4 2.0 22 20-41 2-23 (26)
6 PF12799 LRR_4: Leucine Rich r 97.1 0.00044 9.5E-09 40.9 2.4 32 4-39 1-32 (44)
7 PF13855 LRR_8: Leucine rich r 96.3 0.00055 1.2E-08 41.6 -1.3 35 2-39 23-57 (61)
8 KOG3763|consensus 95.9 0.0046 1E-07 54.3 2.3 42 3-44 269-314 (585)
9 PF12799 LRR_4: Leucine Rich r 95.4 0.012 2.7E-07 34.6 2.1 22 1-22 21-42 (44)
10 KOG2739|consensus 94.4 0.024 5.3E-07 45.6 1.9 41 2-44 89-129 (260)
11 PF13855 LRR_8: Leucine rich r 94.1 0.0067 1.4E-07 36.7 -1.5 34 4-40 1-34 (61)
12 PF13504 LRR_7: Leucine rich r 94.0 0.033 7.2E-07 27.0 1.2 17 4-20 1-17 (17)
13 KOG1259|consensus 93.7 0.026 5.7E-07 47.8 0.9 44 2-45 397-443 (490)
14 smart00370 LRR Leucine-rich re 93.5 0.062 1.4E-06 27.8 1.9 19 3-21 1-19 (26)
15 smart00369 LRR_TYP Leucine-ric 93.5 0.062 1.4E-06 27.8 1.9 19 3-21 1-19 (26)
16 KOG2982|consensus 93.2 0.014 3.1E-07 49.0 -1.5 49 1-49 246-297 (418)
17 smart00365 LRR_SD22 Leucine-ri 92.7 0.087 1.9E-06 28.5 1.7 19 3-21 1-19 (26)
18 PF14580 LRR_9: Leucine-rich r 92.0 0.063 1.4E-06 40.2 0.8 17 3-19 63-79 (175)
19 PF13516 LRR_6: Leucine Rich r 91.6 0.079 1.7E-06 27.0 0.7 16 3-18 1-16 (24)
20 cd00116 LRR_RI Leucine-rich re 90.7 0.3 6.4E-06 36.8 3.3 35 4-38 193-228 (319)
21 PF00560 LRR_1: Leucine Rich R 90.1 0.095 2.1E-06 26.5 0.1 17 5-21 1-17 (22)
22 KOG4237|consensus 89.0 0.3 6.6E-06 42.3 2.4 40 1-40 271-331 (498)
23 KOG4579|consensus 88.1 0.13 2.9E-06 39.2 -0.3 42 1-46 97-138 (177)
24 KOG1859|consensus 88.1 0.13 2.9E-06 47.6 -0.3 43 3-45 278-325 (1096)
25 smart00368 LRR_RI Leucine rich 87.9 0.44 9.6E-06 25.4 1.8 16 4-19 2-17 (28)
26 KOG1644|consensus 87.8 0.28 6E-06 39.0 1.4 33 3-37 87-119 (233)
27 KOG0531|consensus 87.2 0.17 3.7E-06 41.3 -0.1 32 2-38 138-169 (414)
28 KOG3864|consensus 86.7 0.35 7.7E-06 38.2 1.3 38 3-42 150-187 (221)
29 cd00116 LRR_RI Leucine-rich re 86.0 0.82 1.8E-05 34.4 3.0 17 2-18 219-235 (319)
30 KOG3665|consensus 83.2 0.69 1.5E-05 41.5 1.7 18 2-19 171-188 (699)
31 smart00367 LRR_CC Leucine-rich 82.2 0.99 2.1E-05 23.4 1.4 16 3-18 1-17 (26)
32 PLN03150 hypothetical protein; 82.1 1.4 3.1E-05 38.4 3.2 32 3-38 465-497 (623)
33 PLN00113 leucine-rich repeat r 81.3 1.5 3.2E-05 39.0 3.1 34 2-38 91-125 (968)
34 PLN03150 hypothetical protein; 81.2 1.5 3.2E-05 38.3 3.0 35 2-40 440-475 (623)
35 KOG3207|consensus 80.7 0.13 2.8E-06 44.7 -3.6 48 2-49 299-372 (505)
36 KOG3207|consensus 80.4 0.85 1.8E-05 39.8 1.2 37 1-38 143-179 (505)
37 KOG0617|consensus 80.0 0.36 7.8E-06 38.3 -1.1 31 2-36 54-84 (264)
38 KOG4194|consensus 72.9 1.9 4E-05 39.5 1.3 36 3-41 196-231 (873)
39 PLN00113 leucine-rich repeat r 71.8 2.9 6.2E-05 37.2 2.2 15 3-17 522-536 (968)
40 PF09026 CENP-B_dimeris: Centr 70.5 1.4 3E-05 31.1 0.0 7 31-37 1-7 (101)
41 KOG1947|consensus 69.8 5.2 0.00011 31.6 3.1 35 3-39 268-303 (482)
42 KOG1259|consensus 69.2 2.8 6.1E-05 35.8 1.5 32 3-39 306-337 (490)
43 COG4886 Leucine-rich repeat (L 68.7 2.3 5E-05 33.7 0.9 19 3-21 162-180 (394)
44 KOG2982|consensus 66.9 3.2 6.9E-05 35.3 1.4 18 1-18 94-111 (418)
45 KOG0531|consensus 66.1 3 6.5E-05 34.1 1.1 31 3-37 94-124 (414)
46 KOG4194|consensus 65.5 3.1 6.7E-05 38.1 1.1 37 1-40 389-425 (873)
47 KOG3665|consensus 63.3 5.6 0.00012 35.8 2.3 33 3-37 147-179 (699)
48 KOG1909|consensus 62.1 5.4 0.00012 33.9 1.9 36 2-37 239-276 (382)
49 KOG0472|consensus 61.1 3.9 8.5E-05 36.0 0.9 33 2-38 433-465 (565)
50 KOG1947|consensus 58.7 7.8 0.00017 30.6 2.2 36 2-38 293-328 (482)
51 KOG2123|consensus 57.3 1.3 2.8E-05 37.3 -2.5 32 3-36 62-93 (388)
52 COG4886 Leucine-rich repeat (L 56.4 7.2 0.00016 30.9 1.7 34 2-40 253-286 (394)
53 smart00364 LRR_BAC Leucine-ric 56.2 7.4 0.00016 21.1 1.2 19 4-22 2-20 (26)
54 KOG0472|consensus 54.8 5.6 0.00012 35.0 0.9 16 2-17 526-541 (565)
55 KOG2120|consensus 54.4 9.1 0.0002 32.6 2.0 35 1-37 310-344 (419)
56 KOG0444|consensus 51.4 4.2 9E-05 38.0 -0.5 36 2-43 171-206 (1255)
57 KOG0444|consensus 51.2 5.6 0.00012 37.2 0.3 36 2-41 337-372 (1255)
58 KOG4579|consensus 51.1 3.5 7.6E-05 31.5 -0.8 33 2-38 75-107 (177)
59 PLN03210 Resistant to P. syrin 50.1 14 0.00031 34.5 2.7 14 27-40 677-690 (1153)
60 KOG4658|consensus 49.3 11 0.00024 34.9 1.9 13 3-15 570-582 (889)
61 KOG0617|consensus 49.2 4.9 0.00011 32.0 -0.3 40 2-45 77-116 (264)
62 KOG4079|consensus 48.8 3.1 6.8E-05 31.4 -1.4 31 6-37 30-60 (169)
63 PRK15387 E3 ubiquitin-protein 48.0 12 0.00027 34.3 1.9 17 4-20 242-258 (788)
64 PLN03210 Resistant to P. syrin 45.8 23 0.00051 33.1 3.4 31 4-38 846-876 (1153)
65 KOG0618|consensus 45.2 4.2 9E-05 38.5 -1.5 37 2-38 405-459 (1081)
66 KOG1859|consensus 42.9 6.2 0.00014 37.1 -0.7 31 3-38 186-216 (1096)
67 KOG4237|consensus 42.3 11 0.00023 33.0 0.7 18 2-19 89-106 (498)
68 KOG1909|consensus 40.8 28 0.00061 29.7 2.9 41 1-41 210-251 (382)
69 PRK15387 E3 ubiquitin-protein 39.6 23 0.00049 32.6 2.3 30 4-40 222-251 (788)
70 PF07723 LRR_2: Leucine Rich R 39.0 18 0.0004 19.0 1.0 26 5-31 1-26 (26)
71 PRK15370 E3 ubiquitin-protein 38.9 28 0.0006 31.7 2.7 16 5-20 347-362 (754)
72 TIGR00864 PCC polycystin catio 37.9 38 0.00082 35.5 3.7 28 2-29 17-47 (2740)
73 COG1949 Orn Oligoribonuclease 37.0 15 0.00032 28.5 0.6 28 11-41 104-132 (184)
74 PF02724 CDC45: CDC45-like pro 35.9 31 0.00067 30.6 2.5 11 32-42 98-108 (622)
75 KOG4353|consensus 34.5 40 0.00087 25.0 2.5 32 12-44 47-82 (139)
76 KOG3763|consensus 34.3 30 0.00065 31.1 2.2 38 2-40 216-253 (585)
77 KOG4341|consensus 30.7 14 0.00031 32.3 -0.4 38 2-40 188-225 (483)
78 KOG0618|consensus 30.0 39 0.00084 32.4 2.2 12 4-15 476-487 (1081)
79 KOG4658|consensus 28.3 25 0.00054 32.7 0.7 39 3-41 594-652 (889)
80 PF15654 Tox-WTIP: Toxin with 27.3 31 0.00068 21.8 0.8 12 21-34 29-40 (54)
81 PF15243 ANAPC15: Anaphase-pro 25.2 1.3E+02 0.0027 20.8 3.6 23 20-43 38-60 (92)
82 PF01239 PPTA: Protein prenylt 24.9 39 0.00083 17.7 0.8 10 21-30 21-30 (31)
83 PF05764 YL1: YL1 nuclear prot 24.5 42 0.00091 26.2 1.3 13 57-69 41-53 (240)
84 KOG2120|consensus 22.6 37 0.00081 29.0 0.7 17 25-41 307-323 (419)
85 PRK15370 E3 ubiquitin-protein 21.0 38 0.00083 30.8 0.5 16 5-20 368-383 (754)
86 PRK13708 plasmid maintenance p 20.9 52 0.0011 23.0 1.0 18 13-30 77-94 (101)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=2.2e-13 Score=101.91 Aligned_cols=48 Identities=38% Similarity=0.501 Sum_probs=35.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~ds 49 (106)
.||+|++|+|.|||||..++||.+||++||+|++|||++|+..||..+
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A 158 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEA 158 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B----
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccc
Confidence 689999999999999999999999999999999999999999999654
No 2
>KOG2739|consensus
Probab=99.09 E-value=4.3e-11 Score=95.30 Aligned_cols=54 Identities=56% Similarity=0.994 Sum_probs=50.5
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCCCCccc
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEE 54 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~dsd~e~e 54 (106)
+.|+||++|.|++|++++...||.+||.+||||+|||+++|.++|++.+++++.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~~e~~ 166 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEADAEDD 166 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccccccccc
Confidence 467899999999999999999999999999999999999999999999888764
No 3
>KOG1644|consensus
Probab=99.03 E-value=1.6e-11 Score=96.13 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=45.0
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~ 47 (106)
++||+|++|+|.+||||..++||.||+++||+|++|||..|+.+||.
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~ 156 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE 156 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence 47999999999999999999999999999999999999999999884
No 4
>KOG2123|consensus
Probab=98.45 E-value=4.7e-08 Score=80.55 Aligned_cols=46 Identities=39% Similarity=0.522 Sum_probs=42.7
Q ss_pred CCCCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDGFDAKNNEA 46 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg~~v~~~E~ 46 (106)
++||+|++|+|..||||- -.+||..|+.+||+|+.||.+.|+..|.
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEl 132 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEEL 132 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHH
Confidence 579999999999999987 5889999999999999999999998765
No 5
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=98.12 E-value=1.7e-06 Score=47.42 Aligned_cols=22 Identities=50% Similarity=0.822 Sum_probs=19.7
Q ss_pred hhhHHHHHHHCCCCceecCccC
Q psy8459 20 ENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 20 ~~YR~~V~~~LPqLkyLDg~~v 41 (106)
++||.+||.+||||++||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 5899999999999999998644
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.08 E-value=0.00044 Score=40.93 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=26.0
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++|++|+|.+|.|+..+. .|..||+|++|+..
T Consensus 1 ~~L~~L~l~~N~i~~l~~----~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP----ELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSSS-SSHGG----HGTTCTTSSEEEET
T ss_pred CcceEEEccCCCCcccCc----hHhCCCCCCEEEec
Confidence 689999999999999865 58899999998753
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.28 E-value=0.00055 Score=41.60 Aligned_cols=35 Identities=49% Similarity=0.720 Sum_probs=26.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.|...+. .+|..||+|++|+..
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLS 57 (61)
T ss_dssp TGTTESEEEETSSSESEEET---TTTTTSTTESEEEET
T ss_pred CCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCc
Confidence 57888888888888876533 368888888888653
No 8
>KOG3763|consensus
Probab=95.93 E-value=0.0046 Score=54.35 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCCCceEeCCCCCCCChhhhH----HHHHHHCCCCceecCccCCCC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYR----EKVFELLPNLKYLDGFDAKNN 44 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR----~~V~~~LPqLkyLDg~~v~~~ 44 (106)
...|+.|.|.|||||..-.+| ..|...+|+|..|||..|...
T Consensus 269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQPE 314 (585)
T ss_pred CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCcc
Confidence 457888999999999863333 366779999999999888763
No 9
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.42 E-value=0.012 Score=34.63 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.8
Q ss_pred CCCCCCceEeCCCCCCCChhhh
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENY 22 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~Y 22 (106)
++|++|+.|+|++|+|+..+.+
T Consensus 21 ~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 21 SNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TTCTTSSEEEETSSCCSBEGGG
T ss_pred hCCCCCCEEEecCCCCCCCcCC
Confidence 4799999999999999986543
No 10
>KOG2739|consensus
Probab=94.37 E-value=0.024 Score=45.59 Aligned_cols=41 Identities=32% Similarity=0.442 Sum_probs=35.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN 44 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~ 44 (106)
++|+|++|+|++|.|....+.| -++.|++|+.||.+.....
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hCCceeEEeecCCccccccccc--hhhhhcchhhhhcccCCcc
Confidence 4699999999999999877777 7899999999999776543
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.08 E-value=0.0067 Score=36.74 Aligned_cols=34 Identities=44% Similarity=0.569 Sum_probs=28.7
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
|+|++|.|.+|.++..+ ..+|..+|+|++|+...
T Consensus 1 p~L~~L~l~~n~l~~i~---~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP---PDSFSNLPNLETLDLSN 34 (61)
T ss_dssp TTESEEEETSSTESEEC---TTTTTTGTTESEEEETS
T ss_pred CcCcEEECCCCCCCccC---HHHHcCCCCCCEeEccC
Confidence 68999999999998874 34788999999998653
No 12
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.96 E-value=0.033 Score=27.03 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=11.3
Q ss_pred CCCceEeCCCCCCCChh
Q psy8459 4 TNLKHVDLFNNDVTTIE 20 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~ 20 (106)
++|+.|+|++|.++..|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 58999999999987654
No 13
>KOG1259|consensus
Probab=93.68 E-value=0.026 Score=47.81 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCC---CCceecCccCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLP---NLKYLDGFDAKNNE 45 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LP---qLkyLDg~~v~~~E 45 (106)
+||.|.+|.|.+||++..+.||.+|++.+- +=-.||+..-+.+|
T Consensus 397 ~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~~E 443 (490)
T KOG1259|consen 397 NLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQQE 443 (490)
T ss_pred cccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcchhh
Confidence 689999999999999999999999999875 34467776665544
No 14
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.54 E-value=0.062 Score=27.76 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.8
Q ss_pred CCCCceEeCCCCCCCChhh
Q psy8459 3 LTNLKHVDLFNNDVTTIEN 21 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~ 21 (106)
|++|++|+|.+|.|+..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 6899999999999998754
No 15
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.54 E-value=0.062 Score=27.76 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.8
Q ss_pred CCCCceEeCCCCCCCChhh
Q psy8459 3 LTNLKHVDLFNNDVTTIEN 21 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~ 21 (106)
|++|++|+|.+|.|+..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 6899999999999998754
No 16
>KOG2982|consensus
Probab=93.16 E-value=0.014 Score=49.03 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=41.9
Q ss_pred CCCCCCceEeCCCCCCCCh---hhhHHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTTI---ENYREKVFELLPNLKYLDGFDAKNNEAPDS 49 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~---~~YR~~V~~~LPqLkyLDg~~v~~~E~~ds 49 (106)
++|++|..|.+..||+... ..-|+-+|+.||++++|.|..|...+|.+|
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS 297 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS 297 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence 4789999999999999762 223777899999999999999999988775
No 17
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.69 E-value=0.087 Score=28.47 Aligned_cols=19 Identities=53% Similarity=0.760 Sum_probs=16.6
Q ss_pred CCCCceEeCCCCCCCChhh
Q psy8459 3 LTNLKHVDLFNNDVTTIEN 21 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~ 21 (106)
|++|+.|+|..|.|+..++
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 6899999999999987655
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=92.03 E-value=0.063 Score=40.22 Aligned_cols=17 Identities=47% Similarity=0.714 Sum_probs=4.1
Q ss_pred CCCCceEeCCCCCCCCh
Q psy8459 3 LTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~ 19 (106)
|++|++|.|.+|.|+..
T Consensus 63 L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -TT--EEE--SS---S-
T ss_pred hhhhhhcccCCCCCCcc
Confidence 44555555555555443
No 19
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.58 E-value=0.079 Score=26.98 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=11.7
Q ss_pred CCCCceEeCCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~ 18 (106)
+++|++|+|++|+|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 5899999999999865
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=90.70 E-value=0.3 Score=36.85 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=15.9
Q ss_pred CCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+|.+|.++.. ..+-...+..+|+|++|+.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 3555555555555432 2223334444455555543
No 21
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.10 E-value=0.095 Score=26.54 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.3
Q ss_pred CCceEeCCCCCCCChhh
Q psy8459 5 NLKHVDLFNNDVTTIEN 21 (106)
Q Consensus 5 ~L~~L~L~gNPV~~~~~ 21 (106)
+|++|+|++|.++..|.
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 68999999999986543
No 22
>KOG4237|consensus
Probab=88.98 E-value=0.3 Score=42.31 Aligned_cols=40 Identities=40% Similarity=0.557 Sum_probs=33.2
Q ss_pred CCCCCCceEeCCCCCCCCh---------------------hhhHHHHHHHCCCCceecCcc
Q psy8459 1 KQLTNLKHVDLFNNDVTTI---------------------ENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~---------------------~~YR~~V~~~LPqLkyLDg~~ 40 (106)
++|++|+.|+|++|.|+.+ ...+.+||.-|.+|+.|+.+.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 5799999999999999875 455778888899998887654
No 23
>KOG4579|consensus
Probab=88.10 E-value=0.13 Score=39.18 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEA 46 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~ 46 (106)
+.|+.|++|+|+.||+...+. ||+.|.+|-|||...-.-.++
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~----vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPR----VIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred hhhHHhhhcccccCccccchH----HHHHHHhHHHhcCCCCccccC
Confidence 357889999999999988643 777788888888655444444
No 24
>KOG1859|consensus
Probab=88.08 E-value=0.13 Score=47.58 Aligned_cols=43 Identities=23% Similarity=0.086 Sum_probs=35.3
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCC-----CCceecCccCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLP-----NLKYLDGFDAKNNE 45 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LP-----qLkyLDg~~v~~~E 45 (106)
|..|+.|+|.|||+|-.+.||..++..+. .=-.|||+-+.+.+
T Consensus 278 Ls~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~e 325 (1096)
T KOG1859|consen 278 LSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGRE 325 (1096)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchh
Confidence 34688899999999999999999998865 44478998877754
No 25
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.92 E-value=0.44 Score=25.44 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.3
Q ss_pred CCCceEeCCCCCCCCh
Q psy8459 4 TNLKHVDLFNNDVTTI 19 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~ 19 (106)
++|++|+|++|+|...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 6899999999999764
No 26
>KOG1644|consensus
Probab=87.83 E-value=0.28 Score=39.05 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=18.7
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
+++|++|.|.+|.|+.....- -++.||+|+||=
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLD--PLASCPKLEYLT 119 (233)
T ss_pred ccccceEEecCcchhhhhhcc--hhccCCccceee
Confidence 455666666666666544432 355666666653
No 27
>KOG0531|consensus
Probab=87.19 E-value=0.17 Score=41.26 Aligned_cols=32 Identities=38% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
.|+.|+.|+|.+|+|+...+|.. +++|++|+.
T Consensus 138 ~l~~L~~L~l~~N~i~~~~~~~~-----l~~L~~l~l 169 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDISGLES-----LKSLKLLDL 169 (414)
T ss_pred hccchhhheeccCcchhccCCcc-----chhhhcccC
Confidence 46678889999999999888876 555665554
No 28
>KOG3864|consensus
Probab=86.68 E-value=0.35 Score=38.23 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAK 42 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~ 42 (106)
+++|+.|.|++||.....+ ...+..|++|+.|..+...
T Consensus 150 ~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGG--LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechhH--HHHHHHhhhhHHHHhcCch
Confidence 5799999999999866544 4578888888888766543
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=85.97 E-value=0.82 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=10.9
Q ss_pred CCCCCceEeCCCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTT 18 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~ 18 (106)
++++|++|+|++|+++.
T Consensus 219 ~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 219 SLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ccCCCCEEecCCCcCch
Confidence 35666777777766664
No 30
>KOG3665|consensus
Probab=83.20 E-value=0.69 Score=41.49 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=13.1
Q ss_pred CCCCCceEeCCCCCCCCh
Q psy8459 2 QLTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~ 19 (106)
+||||.+|++++.+|+..
T Consensus 171 sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL 188 (699)
T ss_pred ccCccceeecCCCCccCc
Confidence 577777777777777765
No 31
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.16 E-value=0.99 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.4
Q ss_pred CCCCceEeCCCCC-CCC
Q psy8459 3 LTNLKHVDLFNND-VTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNP-V~~ 18 (106)
+++|++|+|.+|+ |++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 6899999999998 444
No 32
>PLN03150 hypothetical protein; Provisional
Probab=82.09 E-value=1.4 Score=38.39 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=16.7
Q ss_pred CCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|+.|+|++|.++. .+. .|..|++|++|+.
T Consensus 465 l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~L 497 (623)
T PLN03150 465 ITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNL 497 (623)
T ss_pred CCCCCEEECCCCCCCCCCch----HHhcCCCCCEEEC
Confidence 4455555555555542 222 3556666666664
No 33
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=81.32 E-value=1.5 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=23.8
Q ss_pred CCCCCceEeCCCCCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~-~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|.++ ..+. .++..+++|++|+.
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~---~~~~~l~~L~~L~L 125 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPD---DIFTTSSSLRYLNL 125 (968)
T ss_pred CCCCCCEEECCCCccCCcCCh---HHhccCCCCCEEEC
Confidence 5778888888888876 3433 25667777777775
No 34
>PLN03150 hypothetical protein; Provisional
Probab=81.20 E-value=1.5 Score=38.34 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|++|+|.+|.++. .+. .|..|++|++||...
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSY 475 (623)
T ss_pred CCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCC
Confidence 57899999999999874 443 478899999998643
No 35
>KOG3207|consensus
Probab=80.66 E-value=0.13 Score=44.71 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=35.1
Q ss_pred CCCCCceEeCCCCCCCCh------------hhh--------------HHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTI------------ENY--------------REKVFELLPNLKYLDGFDAKNNEAPDS 49 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~------------~~Y--------------R~~V~~~LPqLkyLDg~~v~~~E~~ds 49 (106)
.|++|++|++.-|+|... .+| +.-||+.++||..|....|..++|..+
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A 372 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA 372 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh
Confidence 356777777777777332 112 244899999999999999999998764
No 36
>KOG3207|consensus
Probab=80.36 E-value=0.85 Score=39.82 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+.|++++.|+|+.|-+....--++ |+..||+|+.|.-
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNL 179 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHH-HHHhcccchhccc
Confidence 458899999999999888777665 8888999988864
No 37
>KOG0617|consensus
Probab=79.96 E-value=0.36 Score=38.34 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCcee
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyL 36 (106)
.|++|..|+|++|.|...|. -|..||.|+.|
T Consensus 54 ~l~nlevln~~nnqie~lp~----~issl~klr~l 84 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPT----SISSLPKLRIL 84 (264)
T ss_pred HhhhhhhhhcccchhhhcCh----hhhhchhhhhe
Confidence 46677778888877766544 23444444444
No 38
>KOG4194|consensus
Probab=72.89 E-value=1.9 Score=39.50 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=25.6
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v 41 (106)
|.+|..|-|..|.|+..| .++|+.||+|+.||..+.
T Consensus 196 lnsL~tlkLsrNrittLp---~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLP---QRSFKRLPKLESLDLNRN 231 (873)
T ss_pred cchheeeecccCcccccC---HHHhhhcchhhhhhcccc
Confidence 445666666666666653 458999999999997543
No 39
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=71.84 E-value=2.9 Score=37.18 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=7.6
Q ss_pred CCCCceEeCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVT 17 (106)
Q Consensus 3 L~~L~~L~L~gNPV~ 17 (106)
|++|++|+|++|.++
T Consensus 522 l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 522 CKKLVSLDLSHNQLS 536 (968)
T ss_pred ccCCCEEECCCCccc
Confidence 445555555555554
No 40
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=70.48 E-value=1.4 Score=31.10 Aligned_cols=7 Identities=43% Similarity=1.165 Sum_probs=0.0
Q ss_pred CCCceec
Q psy8459 31 PNLKYLD 37 (106)
Q Consensus 31 PqLkyLD 37 (106)
|.|.||-
T Consensus 1 ~~~~~~e 7 (101)
T PF09026_consen 1 PTLHFLE 7 (101)
T ss_dssp -------
T ss_pred Cceeecc
Confidence 5566663
No 41
>KOG1947|consensus
Probab=69.83 E-value=5.2 Score=31.60 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=18.8
Q ss_pred CCCCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCc
Q psy8459 3 LTNLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 3 L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
|++|++|.|.+++ |+.. +. ..|...+|+|+.|+-.
T Consensus 268 c~~L~~L~l~~c~~lt~~-gl-~~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDE-GL-VSIAERCPSLRELDLS 303 (482)
T ss_pred CCCcceEccCCCCccchh-HH-HHHHHhcCcccEEeee
Confidence 5666666655555 3332 21 2356666666666554
No 42
>KOG1259|consensus
Probab=69.20 E-value=2.8 Score=35.84 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=19.6
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|+++.|+|+.|-|....+ ++.||||+-||..
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-----La~L~~L~~LDLS 337 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-----LAELPQLQLLDLS 337 (490)
T ss_pred ccceeEEeccccceeeehh-----hhhcccceEeecc
Confidence 4566666666666655544 5667777777653
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=68.73 E-value=2.3 Score=33.74 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=10.2
Q ss_pred CCCCceEeCCCCCCCChhh
Q psy8459 3 LTNLKHVDLFNNDVTTIEN 21 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~ 21 (106)
|++|+.|+|..|+++..+.
T Consensus 162 l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred cccccccccCCchhhhhhh
Confidence 4555555555555555433
No 44
>KOG2982|consensus
Probab=66.87 E-value=3.2 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=14.2
Q ss_pred CCCCCCceEeCCCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTT 18 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~ 18 (106)
++||.|+.|+|+.||++.
T Consensus 94 e~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSS 111 (418)
T ss_pred hcCccceEeeccCCcCCC
Confidence 367888888888888866
No 45
>KOG0531|consensus
Probab=66.08 E-value=3 Score=34.06 Aligned_cols=31 Identities=42% Similarity=0.701 Sum_probs=13.8
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|..|+|.+|-|....+- +..|++|++|+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~ 124 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL----LSSLVNLQVLD 124 (414)
T ss_pred ccceeeeeccccchhhcccc----hhhhhcchhee
Confidence 34444444444444443331 44444444444
No 46
>KOG4194|consensus
Probab=65.54 E-value=3.1 Score=38.14 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+.|++|+.|.|.||.+...+ ++.|.-|++|..||...
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~---krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIP---KRAFSGLEALEHLDLGD 425 (873)
T ss_pred ccchhhhheeecCceeeecc---hhhhccCcccceecCCC
Confidence 35788888888888887763 45788888888888643
No 47
>KOG3665|consensus
Probab=63.31 E-value=5.6 Score=35.79 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=15.0
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
||+|++|.+.|=.+....-+ .+...+|+|.+||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~--~lc~sFpNL~sLD 179 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFS--QLCASFPNLRSLD 179 (699)
T ss_pred CcccceEEecCceecchhHH--HHhhccCccceee
Confidence 45555555444333333221 2455555555554
No 48
>KOG1909|consensus
Probab=62.12 E-value=5.4 Score=33.92 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=17.9
Q ss_pred CCCCCceEeCCCCCCCChhh--hHHHHHHHCCCCceec
Q psy8459 2 QLTNLKHVDLFNNDVTTIEN--YREKVFELLPNLKYLD 37 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~--YR~~V~~~LPqLkyLD 37 (106)
.||+|+.|+|..|-+...-. +-..+-...|+|++|.
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 34555555555555544222 2223334466777776
No 49
>KOG0472|consensus
Probab=61.15 E-value=3.9 Score=35.96 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
.|++|+.|+|++|++++.|. -+..+..|+.||-
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP~----e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLPE----EMGSLVRLQTLNL 465 (565)
T ss_pred hhhcceeeecccchhhhcch----hhhhhhhhheecc
Confidence 57899999999999999765 2333344666553
No 50
>KOG1947|consensus
Probab=58.73 E-value=7.8 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.......+... ...+|+|+.|..
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKL 328 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhh
Confidence 688999999999998877777776 556998777654
No 51
>KOG2123|consensus
Probab=57.32 E-value=1.3 Score=37.29 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=15.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCcee
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyL 36 (106)
|++|+.|+|+.|-|..... .+-+..||+|+.|
T Consensus 62 CtrLkElYLRkN~I~sldE--L~YLknlpsLr~L 93 (388)
T KOG2123|consen 62 CTRLKELYLRKNCIESLDE--LEYLKNLPSLRTL 93 (388)
T ss_pred HHHHHHHHHHhcccccHHH--HHHHhcCchhhhH
Confidence 3444444444444444332 2245566777643
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=56.37 E-value=7.2 Score=30.92 Aligned_cols=34 Identities=38% Similarity=0.539 Sum_probs=25.5
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
.+++|+.|++++|.++.... +..+.+|++||...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSG 286 (394)
T ss_pred cccccceecccccccccccc-----ccccCccCEEeccC
Confidence 46678888888888888755 66777888887643
No 53
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.24 E-value=7.4 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.0
Q ss_pred CCCceEeCCCCCCCChhhh
Q psy8459 4 TNLKHVDLFNNDVTTIENY 22 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~Y 22 (106)
++|+.|++++|.++..|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 5799999999999887753
No 54
>KOG0472|consensus
Probab=54.82 E-value=5.6 Score=35.00 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=9.4
Q ss_pred CCCCCceEeCCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVT 17 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~ 17 (106)
+|+||++|.|.|||+.
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 4555666666666655
No 55
>KOG2120|consensus
Probab=54.41 E-value=9.1 Score=32.63 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=20.1
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
++||+|.+|+|+.|---.. + -..+|.++|-|++|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~-~-~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN-D-CFQEFFKFNYLQHLS 344 (419)
T ss_pred HhCCceeeeccccccccCc-h-HHHHHHhcchheeee
Confidence 4688888888886543222 1 233455555555553
No 56
>KOG0444|consensus
Probab=51.36 E-value=4.2 Score=37.97 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKN 43 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~ 43 (106)
+|.+|++|.|++||+-.. -+..||+++.|---.+..
T Consensus 171 RL~~LqtL~Ls~NPL~hf------QLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHF------QLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred HHhhhhhhhcCCChhhHH------HHhcCccchhhhhhhccc
Confidence 577899999999998543 345667666654433333
No 57
>KOG0444|consensus
Probab=51.21 E-value=5.6 Score=37.19 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=31.1
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v 41 (106)
+|++|+.|.|..|.+...|. .|..||.|++||.+..
T Consensus 337 RC~kL~kL~L~~NrLiTLPe----aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLPE----AIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhHHHHHhcccccceeechh----hhhhcCCcceeeccCC
Confidence 68899999999999988776 7899999999997543
No 58
>KOG4579|consensus
Probab=51.08 E-value=3.5 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++.+++|+|..|.|+..|- -++.+|.|+.|..
T Consensus 75 kf~t~t~lNl~~neisdvPe----E~Aam~aLr~lNl 107 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPE----ELAAMPALRSLNL 107 (177)
T ss_pred ccchhhhhhcchhhhhhchH----HHhhhHHhhhccc
Confidence 35567788888888888765 2777888887765
No 59
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=50.11 E-value=14 Score=34.48 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=8.0
Q ss_pred HHHCCCCceecCcc
Q psy8459 27 FELLPNLKYLDGFD 40 (106)
Q Consensus 27 ~~~LPqLkyLDg~~ 40 (106)
|..|++|++|+...
T Consensus 677 i~~L~~L~~L~L~~ 690 (1153)
T PLN03210 677 IQYLNKLEDLDMSR 690 (1153)
T ss_pred hhccCCCCEEeCCC
Confidence 45556666666544
No 60
>KOG4658|consensus
Probab=49.32 E-value=11 Score=34.87 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=6.8
Q ss_pred CCCCceEeCCCCC
Q psy8459 3 LTNLKHVDLFNND 15 (106)
Q Consensus 3 L~~L~~L~L~gNP 15 (106)
+|.|+.|+|++|.
T Consensus 570 m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 570 LPLLRVLDLSGNS 582 (889)
T ss_pred CcceEEEECCCCC
Confidence 4555555555443
No 61
>KOG0617|consensus
Probab=49.24 E-value=4.9 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNE 45 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E 45 (106)
+|++|++|++.-|.+...|. =|..+|-|.+||..-..-+|
T Consensus 77 sl~klr~lnvgmnrl~~lpr----gfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLNILPR----GFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hchhhhheecchhhhhcCcc----ccCCCchhhhhhcccccccc
Confidence 68899999999888877653 57889999999875444333
No 62
>KOG4079|consensus
Probab=48.83 E-value=3.1 Score=31.39 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=22.6
Q ss_pred CceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 6 LKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 6 L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
..+.+...|+ ....+-|.+||+.+|||+|-.
T Consensus 30 vfsvnynt~g-~~~~GARdFVfwNipQiQykN 60 (169)
T KOG4079|consen 30 VFSVNYNTNG-PEQSGARDFVFWNIPQIQYKN 60 (169)
T ss_pred EEEEeccCCC-ccccCccceEEecchhhcccC
Confidence 3445555666 455677999999999999853
No 63
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=47.98 E-value=12 Score=34.29 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=10.1
Q ss_pred CCCceEeCCCCCCCChh
Q psy8459 4 TNLKHVDLFNNDVTTIE 20 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~ 20 (106)
++|++|+|.+|.++..+
T Consensus 242 ~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 242 PELRTLEVSGNQLTSLP 258 (788)
T ss_pred CCCcEEEecCCccCccc
Confidence 45666666666665544
No 64
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=45.81 E-value=23 Score=33.11 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=18.5
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++|+.|+|.+|.+...|. -|..|++|++|+.
T Consensus 846 ~nL~~L~Ls~n~i~~iP~----si~~l~~L~~L~L 876 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPW----WIEKFSNLSFLDM 876 (1153)
T ss_pred cccCEeECCCCCCccChH----HHhcCCCCCEEEC
Confidence 355666666666665543 3556677777654
No 65
>KOG0618|consensus
Probab=45.20 E-value=4.2 Score=38.53 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCCCCceEeCCCCCCCChhhh-----HHH-------------HHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENY-----REK-------------VFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~Y-----R~~-------------V~~~LPqLkyLDg 38 (106)
+|..|+.|+|+||.++..+.- |.. -++.+|||++||-
T Consensus 405 kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec
Confidence 456677777777777766432 111 2456778888875
No 66
>KOG1859|consensus
Probab=42.92 E-value=6.2 Score=37.07 Aligned_cols=31 Identities=42% Similarity=0.603 Sum_probs=21.4
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|+.|++|+|+-|.+++..+.| .||.|+.||.
T Consensus 186 l~ale~LnLshNk~~~v~~Lr-----~l~~LkhLDl 216 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLR-----RLPKLKHLDL 216 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHH-----hccccccccc
Confidence 456777888888887765433 5777777774
No 67
>KOG4237|consensus
Probab=42.27 E-value=11 Score=33.03 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=13.2
Q ss_pred CCCCCceEeCCCCCCCCh
Q psy8459 2 QLTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~ 19 (106)
.|++|+.|+|+.|.|+.+
T Consensus 89 ~l~~LRrLdLS~N~Is~I 106 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFI 106 (498)
T ss_pred chhhhceecccccchhhc
Confidence 467777788887777664
No 68
>KOG1909|consensus
Probab=40.84 E-value=28 Score=29.69 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCccC
Q psy8459 1 KQLTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~v 41 (106)
+.|++|+.|+|..|-++.. .-|=...+..+|+|+.|-+.++
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3689999999999999884 4455667777788887766444
No 69
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=39.63 E-value=23 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
++|+.|.|.+|.++..+. .+|+|++|+...
T Consensus 222 ~~L~~L~L~~N~Lt~LP~-------lp~~Lk~LdLs~ 251 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA-------LPPELRTLEVSG 251 (788)
T ss_pred cCCCEEEccCCcCCCCCC-------CCCCCcEEEecC
Confidence 368999999999988764 368888887643
No 70
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=39.00 E-value=18 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=16.0
Q ss_pred CCceEeCCCCCCCChhhhHHHHHHHCC
Q psy8459 5 NLKHVDLFNNDVTTIENYREKVFELLP 31 (106)
Q Consensus 5 ~L~~L~L~gNPV~~~~~YR~~V~~~LP 31 (106)
+|++|.|...-+.....+ .++|..+|
T Consensus 1 sLKtL~L~~v~f~~~~~l-~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSL-ERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHH-HHhhccCc
Confidence 588999987766544333 33555554
No 71
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=38.92 E-value=28 Score=31.73 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=8.9
Q ss_pred CCceEeCCCCCCCChh
Q psy8459 5 NLKHVDLFNNDVTTIE 20 (106)
Q Consensus 5 ~L~~L~L~gNPV~~~~ 20 (106)
+|+.|+|.+|.++..+
T Consensus 347 sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 347 ELQVLDVSKNQITVLP 362 (754)
T ss_pred cccEEECCCCCCCcCC
Confidence 5556666666555443
No 72
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.93 E-value=38 Score=35.51 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCCCCceEeCCCCCC---CChhhhHHHHHHH
Q psy8459 2 QLTNLKHVDLFNNDV---TTIENYREKVFEL 29 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV---~~~~~YR~~V~~~ 29 (106)
+|++|+.|.|.+||. |.+..++.|+...
T Consensus 17 ~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 17 NLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred cCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 578999999999999 6688888887665
No 73
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]
Probab=36.98 E-value=15 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCCCCCCChhhhHHHHHHHCCCCc-eecCccC
Q psy8459 11 LFNNDVTTIENYREKVFELLPNLK-YLDGFDA 41 (106)
Q Consensus 11 L~gNPV~~~~~YR~~V~~~LPqLk-yLDg~~v 41 (106)
+.||.||+. |.|++..+|.|. ||-++.+
T Consensus 104 icGNSI~qD---RrFl~r~MP~Le~yfHYR~l 132 (184)
T COG1949 104 ICGNSIAQD---RRFLFRYMPKLEAYFHYRYL 132 (184)
T ss_pred CccchhhHH---HHHHHHHhhhHHHHhhhHhh
Confidence 569999988 999999999985 5555443
No 74
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=35.93 E-value=31 Score=30.61 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=5.4
Q ss_pred CCceecCccCC
Q psy8459 32 NLKYLDGFDAK 42 (106)
Q Consensus 32 qLkyLDg~~v~ 42 (106)
++.++|-..+.
T Consensus 98 ~v~v~ddg~~~ 108 (622)
T PF02724_consen 98 QVIVFDDGDIE 108 (622)
T ss_pred cEEEEECCChh
Confidence 45555554443
No 75
>KOG4353|consensus
Probab=34.46 E-value=40 Score=25.03 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCCCCCChhhhHHHHHHHCC----CCceecCccCCCC
Q psy8459 12 FNNDVTTIENYREKVFELLP----NLKYLDGFDAKNN 44 (106)
Q Consensus 12 ~gNPV~~~~~YR~~V~~~LP----qLkyLDg~~v~~~ 44 (106)
-||||.-...- ..+|.+|| ++..||.++|.++
T Consensus 47 NGn~v~g~esl-s~ff~~LPsS~~qi~~lD~Qpv~dq 82 (139)
T KOG4353|consen 47 NGNPVSGTESL-SEFFNMLPSSEFQINDLDCQPVHDQ 82 (139)
T ss_pred cCCcchhHHHH-HHHHHhCCCccccccccccccchhh
Confidence 49999876553 45888999 7889999988764
No 76
>KOG3763|consensus
Probab=34.25 E-value=30 Score=31.07 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+++.+.+|+|++|-++.+..... |..+.|+|+.|+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSH 253 (585)
T ss_pred CCcceeeeecccchhhchhhhhH-HHHhcchhheeeccc
Confidence 46788888888998888877655 888888888887643
No 77
>KOG4341|consensus
Probab=30.67 E-value=14 Score=32.29 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=26.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
.|++|++|+|.+|++-.... =+++..-+|+|+||.-.-
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~-Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVS-LKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred hcchhhhhhhcccchhHHHH-HHHHHHhhhhHHHhhhcc
Confidence 57889999998876644322 235788889999887643
No 78
>KOG0618|consensus
Probab=30.01 E-value=39 Score=32.37 Aligned_cols=12 Identities=50% Similarity=0.578 Sum_probs=6.1
Q ss_pred CCCceEeCCCCC
Q psy8459 4 TNLKHVDLFNND 15 (106)
Q Consensus 4 ~~L~~L~L~gNP 15 (106)
|+|++|+|+||+
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 345555555554
No 79
>KOG4658|consensus
Probab=28.35 E-value=25 Score=32.66 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCCCceEeCCCCCCCChhh----hH----------------HHHHHHCCCCceecCccC
Q psy8459 3 LTNLKHVDLFNNDVTTIEN----YR----------------EKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~----YR----------------~~V~~~LPqLkyLDg~~v 41 (106)
|-+|++|+|++..|...|. .| ..|+..|++|+||-....
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 4566777777666654322 11 235555777777765443
No 80
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=27.32 E-value=31 Score=21.81 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=9.4
Q ss_pred hhHHHHHHHCCCCc
Q psy8459 21 NYREKVFELLPNLK 34 (106)
Q Consensus 21 ~YR~~V~~~LPqLk 34 (106)
-|| ++.+||+|-
T Consensus 29 iYR--~vRmlPSL~ 40 (54)
T PF15654_consen 29 IYR--GVRMLPSLF 40 (54)
T ss_pred hhh--HHhhccccc
Confidence 367 899999983
No 81
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=25.15 E-value=1.3e+02 Score=20.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=15.0
Q ss_pred hhhHHHHHHHCCCCceecCccCCC
Q psy8459 20 ENYREKVFELLPNLKYLDGFDAKN 43 (106)
Q Consensus 20 ~~YR~~V~~~LPqLkyLDg~~v~~ 43 (106)
..++..|..+-.+|..+ |+.+..
T Consensus 38 q~Wl~sI~ekd~nlvPI-GK~~se 60 (92)
T PF15243_consen 38 QAWLQSIAEKDNNLVPI-GKPASE 60 (92)
T ss_pred HHHHHHHHHhccCcCcc-CCCCCc
Confidence 44566777888888776 454444
No 82
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=24.91 E-value=39 Score=17.71 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=8.0
Q ss_pred hhHHHHHHHC
Q psy8459 21 NYREKVFELL 30 (106)
Q Consensus 21 ~YR~~V~~~L 30 (106)
+||.+||..|
T Consensus 21 ~yR~~ll~~l 30 (31)
T PF01239_consen 21 NYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5799998775
No 83
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.51 E-value=42 Score=26.17 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=6.4
Q ss_pred CCCCcccchhhhh
Q psy8459 57 GDDYEGEDEELEE 69 (106)
Q Consensus 57 ~dd~~~e~e~~e~ 69 (106)
+.+|..+.++++.
T Consensus 41 D~ef~~~~~eed~ 53 (240)
T PF05764_consen 41 DEEFESEEEEEDE 53 (240)
T ss_pred CccccCCCccccc
Confidence 4556655444443
No 84
>KOG2120|consensus
Probab=22.62 E-value=37 Score=29.04 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=12.9
Q ss_pred HHHHHCCCCceecCccC
Q psy8459 25 KVFELLPNLKYLDGFDA 41 (106)
Q Consensus 25 ~V~~~LPqLkyLDg~~v 41 (106)
.+.+.+|+|.-||..+.
T Consensus 307 tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHHhCCceeeeccccc
Confidence 35678999999987543
No 85
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=21.00 E-value=38 Score=30.85 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=8.9
Q ss_pred CCceEeCCCCCCCChh
Q psy8459 5 NLKHVDLFNNDVTTIE 20 (106)
Q Consensus 5 ~L~~L~L~gNPV~~~~ 20 (106)
+|++|+|.+|.++..|
T Consensus 368 ~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 368 TITTLDVSRNALTNLP 383 (754)
T ss_pred CcCEEECCCCcCCCCC
Confidence 5556666666555443
No 86
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=20.91 E-value=52 Score=22.98 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCCCCChhhhHHHHHHHC
Q psy8459 13 NNDVTTIENYREKVFELL 30 (106)
Q Consensus 13 gNPV~~~~~YR~~V~~~L 30 (106)
|.|||+...+|..|+++|
T Consensus 77 g~~V~~L~~~r~~I~~Al 94 (101)
T PRK13708 77 GEEVADLSHRENDIKNAI 94 (101)
T ss_pred ChhhcCHhHhHHHHHHHH
Confidence 899999999999999876
Done!