Query psy8459
Match_columns 106
No_of_seqs 136 out of 642
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:26:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ell_A Acidic leucine-rich nuc 98.4 2.8E-07 9.6E-12 63.0 5.0 49 2-50 118-166 (168)
2 3rw6_A Nuclear RNA export fact 98.4 3.1E-07 1E-11 71.0 4.7 39 5-43 221-263 (267)
3 1a9n_A U2A', U2A'; complex (nu 98.2 3E-07 1E-11 63.8 1.8 45 2-46 111-155 (176)
4 2ca6_A RAN GTPase-activating p 98.2 5E-07 1.7E-11 69.3 1.8 36 3-38 273-310 (386)
5 1ds9_A Outer arm dynein; leuci 98.1 1E-06 3.5E-11 62.1 3.0 47 1-47 137-190 (198)
6 2ca6_A RAN GTPase-activating p 98.0 5.1E-06 1.7E-10 63.6 5.1 36 2-37 301-336 (386)
7 2je0_A Acidic leucine-rich nuc 98.0 5.4E-06 1.8E-10 55.5 3.6 38 2-39 111-148 (149)
8 1dce_A Protein (RAB geranylger 96.8 0.0004 1.4E-08 57.5 1.6 36 2-37 531-566 (567)
9 3e6j_A Variable lymphocyte rec 96.5 0.0014 4.8E-08 47.2 2.9 45 2-46 157-205 (229)
10 2je0_A Acidic leucine-rich nuc 95.7 0.012 4.1E-07 38.9 4.1 33 2-38 62-95 (149)
11 1wwl_A Monocyte differentiatio 95.7 0.012 4.2E-07 43.7 4.5 39 2-40 199-237 (312)
12 4ezg_A Putative uncharacterize 95.4 0.0062 2.1E-07 42.4 1.9 33 2-39 134-167 (197)
13 4glp_A Monocyte differentiatio 95.4 0.012 4E-07 43.7 3.5 39 2-40 195-233 (310)
14 2ell_A Acidic leucine-rich nuc 95.4 0.011 3.7E-07 39.8 3.0 33 2-38 69-102 (168)
15 2r9u_A Variable lymphocyte rec 95.3 0.0084 2.9E-07 41.7 2.3 34 2-38 55-88 (174)
16 3g39_A Variable lymphocyte rec 95.2 0.0084 2.9E-07 41.3 2.0 34 2-38 52-85 (170)
17 2r9u_A Variable lymphocyte rec 95.1 0.0087 3E-07 41.6 2.0 33 3-38 80-112 (174)
18 3g39_A Variable lymphocyte rec 94.9 0.01 3.6E-07 40.8 2.0 34 2-38 76-109 (170)
19 1a9n_A U2A', U2A'; complex (nu 94.9 0.018 6E-07 39.4 3.0 33 3-37 87-119 (176)
20 4ezg_A Putative uncharacterize 94.8 0.018 6.2E-07 40.0 3.0 35 2-39 110-144 (197)
21 3rw6_A Nuclear RNA export fact 94.7 0.022 7.4E-07 43.7 3.3 37 2-39 168-204 (267)
22 4fmz_A Internalin; leucine ric 94.6 0.025 8.4E-07 41.9 3.4 33 3-38 286-318 (347)
23 2o6r_A Variable lymphocyte rec 94.3 0.02 6.7E-07 39.0 2.0 34 2-38 74-107 (177)
24 1xeu_A Internalin C; cellular 94.2 0.023 7.9E-07 41.7 2.4 33 2-39 61-93 (263)
25 3e4g_A ATP synthase subunit S, 94.2 0.032 1.1E-06 40.7 3.1 33 5-40 115-148 (176)
26 2o6s_A Variable lymphocyte rec 93.9 0.026 8.7E-07 39.2 2.0 34 2-38 98-131 (208)
27 1xeu_A Internalin C; cellular 93.8 0.0018 6E-08 47.8 -4.3 17 3-19 149-165 (263)
28 1h6u_A Internalin H; cell adhe 93.8 0.046 1.6E-06 40.8 3.4 30 3-37 128-157 (308)
29 2wfh_A SLIT homolog 2 protein 93.8 0.024 8E-07 39.9 1.7 34 2-38 76-109 (193)
30 2o6r_A Variable lymphocyte rec 93.8 0.032 1.1E-06 37.9 2.3 34 2-38 50-83 (177)
31 2v9t_B SLIT homolog 2 protein 93.6 0.02 6.7E-07 40.9 1.1 17 3-19 79-95 (220)
32 1h6u_A Internalin H; cell adhe 93.6 0.053 1.8E-06 40.5 3.4 16 3-18 172-187 (308)
33 2ifg_A High affinity nerve gro 93.5 0.018 6.3E-07 43.0 0.8 36 2-40 54-89 (347)
34 2o6s_A Variable lymphocyte rec 93.5 0.032 1.1E-06 38.8 2.0 33 3-38 75-107 (208)
35 1h6t_A Internalin B; cell adhe 93.5 0.038 1.3E-06 41.0 2.5 15 4-18 156-170 (291)
36 3e6j_A Variable lymphocyte rec 93.5 0.024 8.3E-07 40.6 1.3 33 2-38 110-142 (229)
37 3rfs_A Internalin B, repeat mo 93.4 0.033 1.1E-06 40.6 2.0 32 3-37 180-211 (272)
38 1h6t_A Internalin B; cell adhe 93.4 0.056 1.9E-06 40.1 3.3 14 4-17 90-103 (291)
39 2wfh_A SLIT homolog 2 protein 93.3 0.026 9E-07 39.6 1.3 34 2-38 52-85 (193)
40 1ozn_A Reticulon 4 receptor; N 93.3 0.068 2.3E-06 38.7 3.5 34 2-38 199-232 (285)
41 4fmz_A Internalin; leucine ric 93.3 0.054 1.9E-06 40.0 3.0 31 3-38 87-117 (347)
42 3m19_A Variable lymphocyte rec 93.1 0.038 1.3E-06 39.6 2.0 14 4-17 131-144 (251)
43 1w8a_A SLIT protein; signaling 93.1 0.024 8.2E-07 39.5 0.8 14 4-17 54-67 (192)
44 2v70_A SLIT-2, SLIT homolog 2 93.0 0.033 1.1E-06 39.7 1.5 33 3-38 80-112 (220)
45 2z80_A TOLL-like receptor 2, v 93.0 0.074 2.5E-06 39.8 3.5 35 2-39 98-132 (353)
46 3m19_A Variable lymphocyte rec 93.0 0.041 1.4E-06 39.5 2.0 17 3-19 106-122 (251)
47 2ast_B S-phase kinase-associat 93.0 0.066 2.3E-06 39.3 3.1 13 26-38 163-175 (336)
48 4g8a_A TOLL-like receptor 4; l 93.0 0.027 9.3E-07 44.2 1.0 34 2-38 98-131 (635)
49 2v9t_B SLIT homolog 2 protein 92.9 0.044 1.5E-06 39.1 2.0 34 2-38 102-135 (220)
50 3rfe_A Platelet glycoprotein I 92.8 0.033 1.1E-06 37.8 1.2 31 5-38 32-62 (130)
51 1w8a_A SLIT protein; signaling 92.8 0.025 8.6E-07 39.4 0.5 35 2-39 76-110 (192)
52 2o6q_A Variable lymphocyte rec 92.8 0.044 1.5E-06 39.7 1.9 12 5-16 86-97 (270)
53 1ds9_A Outer arm dynein; leuci 92.7 0.025 8.5E-07 39.3 0.4 31 3-38 47-77 (198)
54 2xot_A Amphoterin-induced prot 92.7 0.049 1.7E-06 41.4 2.1 37 2-38 134-170 (361)
55 1p9a_G Platelet glycoprotein I 92.6 0.05 1.7E-06 40.4 2.0 33 3-38 147-179 (290)
56 2o6q_A Variable lymphocyte rec 92.5 0.053 1.8E-06 39.3 2.0 15 4-18 157-171 (270)
57 2z66_A Variable lymphocyte rec 92.4 0.065 2.2E-06 39.1 2.3 35 2-39 197-231 (306)
58 4g8a_A TOLL-like receptor 4; l 92.4 0.031 1.1E-06 43.9 0.6 35 2-39 74-108 (635)
59 3rfs_A Internalin B, repeat mo 92.3 0.062 2.1E-06 39.1 2.1 17 3-19 62-78 (272)
60 2v70_A SLIT-2, SLIT homolog 2 92.3 0.077 2.6E-06 37.8 2.5 34 2-38 103-136 (220)
61 1p9a_G Platelet glycoprotein I 92.2 0.057 2E-06 40.1 1.9 12 27-38 120-131 (290)
62 2ft3_A Biglycan; proteoglycan, 92.2 0.063 2.2E-06 39.9 2.1 34 2-39 239-272 (332)
63 3o53_A Protein LRIM1, AGAP0063 92.2 0.042 1.4E-06 40.9 1.1 33 3-38 33-65 (317)
64 1o6v_A Internalin A; bacterial 92.2 0.093 3.2E-06 41.0 3.1 30 3-37 111-140 (466)
65 3v47_A TOLL-like receptor 5B a 92.0 0.071 2.4E-06 40.8 2.3 33 3-38 370-402 (455)
66 2z80_A TOLL-like receptor 2, v 92.0 0.06 2E-06 40.3 1.8 35 2-39 275-309 (353)
67 3ogk_B Coronatine-insensitive 91.9 0.13 4.5E-06 40.6 3.7 35 2-38 486-520 (592)
68 4glp_A Monocyte differentiatio 91.8 0.044 1.5E-06 40.5 0.8 38 2-39 167-205 (310)
69 4fcg_A Uncharacterized protein 91.7 0.062 2.1E-06 40.5 1.6 35 2-40 125-159 (328)
70 4fcg_A Uncharacterized protein 91.7 0.061 2.1E-06 40.6 1.5 35 2-40 204-238 (328)
71 3oja_A Leucine-rich immune mol 91.6 0.054 1.8E-06 43.3 1.2 31 3-38 57-87 (487)
72 1xku_A Decorin; proteoglycan, 91.5 0.098 3.4E-06 38.7 2.5 35 2-40 74-109 (330)
73 1xku_A Decorin; proteoglycan, 91.5 0.076 2.6E-06 39.3 1.9 32 3-38 239-270 (330)
74 1m9s_A Internalin B; cell inva 91.5 0.13 4.4E-06 43.0 3.4 32 2-38 63-94 (605)
75 2z7x_B TOLL-like receptor 1, v 91.4 0.075 2.6E-06 41.6 1.8 33 3-38 443-475 (520)
76 3o6n_A APL1; leucine-rich repe 91.4 0.14 4.9E-06 38.7 3.3 33 2-38 293-325 (390)
77 3o6n_A APL1; leucine-rich repe 91.3 0.095 3.3E-06 39.7 2.3 33 3-38 116-148 (390)
78 2id5_A Lingo-1, leucine rich r 91.3 0.08 2.7E-06 41.1 1.9 33 3-38 79-111 (477)
79 1o6v_A Internalin A; bacterial 91.2 0.17 5.7E-06 39.5 3.7 31 3-38 89-119 (466)
80 2z62_A TOLL-like receptor 4, v 91.2 0.13 4.5E-06 37.0 2.9 33 2-38 122-156 (276)
81 1dce_A Protein (RAB geranylger 91.2 0.085 2.9E-06 43.6 2.1 30 3-37 485-514 (567)
82 2z81_A CD282 antigen, TOLL-lik 91.2 0.14 4.8E-06 40.1 3.2 35 2-39 72-106 (549)
83 1ozn_A Reticulon 4 receptor; N 91.2 0.091 3.1E-06 38.1 2.0 14 4-17 105-118 (285)
84 2xot_A Amphoterin-induced prot 91.0 0.084 2.9E-06 40.1 1.7 34 2-38 62-95 (361)
85 2z81_A CD282 antigen, TOLL-lik 90.8 0.22 7.4E-06 39.1 4.0 39 2-41 359-397 (549)
86 2z7x_B TOLL-like receptor 1, v 90.8 0.21 7.1E-06 39.1 3.9 37 2-39 346-382 (520)
87 3oja_B Anopheles plasmodium-re 90.6 0.18 6.1E-06 40.9 3.3 34 2-39 299-332 (597)
88 2ft3_A Biglycan; proteoglycan, 90.6 0.11 3.8E-06 38.5 2.0 35 2-39 76-110 (332)
89 1m9s_A Internalin B; cell inva 90.5 0.022 7.7E-07 47.6 -2.0 32 2-38 173-204 (605)
90 3zyj_A Leucine-rich repeat-con 90.4 0.12 4.2E-06 40.0 2.2 18 3-20 184-201 (440)
91 2ast_B S-phase kinase-associat 90.3 0.34 1.1E-05 35.5 4.4 13 26-38 217-229 (336)
92 3zyi_A Leucine-rich repeat-con 90.3 0.091 3.1E-06 40.9 1.4 35 2-39 145-179 (452)
93 2z66_A Variable lymphocyte rec 90.3 0.079 2.7E-06 38.7 0.9 34 3-38 100-133 (306)
94 3oja_B Anopheles plasmodium-re 90.2 0.12 4E-06 42.0 2.0 33 3-38 122-154 (597)
95 3vq2_A TLR4, TOLL-like recepto 90.2 0.13 4.4E-06 40.9 2.2 16 3-18 79-94 (606)
96 3o53_A Protein LRIM1, AGAP0063 90.0 0.15 5E-06 37.9 2.3 35 1-40 55-89 (317)
97 3a79_B TLR6, VLRB.59, TOLL-lik 89.9 0.12 4.2E-06 41.2 1.8 32 3-37 472-503 (562)
98 1wwl_A Monocyte differentiatio 89.8 0.13 4.5E-06 38.1 1.8 33 2-38 119-156 (312)
99 2z62_A TOLL-like receptor 4, v 89.8 0.13 4.6E-06 37.0 1.8 34 2-38 74-107 (276)
100 2ifg_A High affinity nerve gro 89.7 0.073 2.5E-06 39.6 0.4 36 2-40 29-65 (347)
101 1io0_A Tropomodulin; LRR prote 89.7 0.36 1.2E-05 33.6 4.0 36 3-38 64-100 (185)
102 3zyj_A Leucine-rich repeat-con 89.7 0.12 4.1E-06 40.0 1.6 34 2-38 86-119 (440)
103 3v47_A TOLL-like receptor 5B a 89.6 0.16 5.4E-06 38.8 2.2 34 3-38 128-161 (455)
104 3bz5_A Internalin-J, INLJ; leu 89.4 0.17 6E-06 40.1 2.4 14 4-17 85-98 (457)
105 1ogq_A PGIP-2, polygalacturona 89.3 0.2 7E-06 37.2 2.6 32 3-38 243-275 (313)
106 3zyi_A Leucine-rich repeat-con 89.3 0.18 6.1E-06 39.2 2.3 13 26-38 237-249 (452)
107 3a79_B TLR6, VLRB.59, TOLL-lik 89.1 0.16 5.6E-06 40.5 2.0 10 28-37 143-152 (562)
108 1ogq_A PGIP-2, polygalacturona 89.1 0.16 5.6E-06 37.7 1.9 34 2-39 219-252 (313)
109 2z63_A TOLL-like receptor 4, v 89.0 0.16 5.5E-06 39.8 1.9 10 28-37 146-155 (570)
110 2xwt_C Thyrotropin receptor; s 89.0 0.31 1.1E-05 34.3 3.2 32 4-38 179-212 (239)
111 3bz5_A Internalin-J, INLJ; leu 88.6 0.21 7.3E-06 39.6 2.4 31 2-38 104-134 (457)
112 3vq2_A TLR4, TOLL-like recepto 88.5 0.17 5.6E-06 40.3 1.6 32 3-38 127-160 (606)
113 4b8c_D Glucose-repressible alc 88.2 0.27 9.3E-06 41.6 2.9 32 3-38 269-300 (727)
114 2z63_A TOLL-like receptor 4, v 88.0 0.22 7.4E-06 39.0 2.0 16 3-18 469-484 (570)
115 3rgz_A Protein brassinosteroid 87.8 0.26 9E-06 41.3 2.5 38 2-39 149-186 (768)
116 1z7x_W Ribonuclease inhibitor; 87.8 0.53 1.8E-05 35.9 4.0 36 3-38 255-291 (461)
117 3t6q_A CD180 antigen; protein- 87.7 0.12 4.1E-06 41.1 0.4 14 3-16 448-461 (606)
118 3oja_A Leucine-rich immune mol 87.4 0.27 9.1E-06 39.3 2.2 32 3-38 190-221 (487)
119 2ra8_A Uncharacterized protein 87.2 0.13 4.3E-06 40.5 0.2 15 3-17 251-265 (362)
120 2id5_A Lingo-1, leucine rich r 87.0 0.39 1.3E-05 37.1 2.9 34 2-38 150-183 (477)
121 1z7x_W Ribonuclease inhibitor; 86.9 0.74 2.5E-05 35.0 4.4 35 4-38 313-348 (461)
122 3ogk_B Coronatine-insensitive 86.8 0.95 3.2E-05 35.6 5.1 38 3-40 191-229 (592)
123 4b8c_D Glucose-repressible alc 86.7 0.21 7.2E-06 42.3 1.3 34 2-39 291-324 (727)
124 3un9_A NLR family member X1; l 86.5 0.5 1.7E-05 36.8 3.3 36 3-38 210-246 (372)
125 2xwt_C Thyrotropin receptor; s 86.5 0.15 5.1E-06 36.0 0.3 16 3-18 104-119 (239)
126 2p1m_B Transport inhibitor res 86.4 0.24 8.4E-06 38.9 1.5 14 3-16 480-493 (594)
127 4ay9_X Follicle-stimulating ho 86.4 0.12 4E-06 39.1 -0.4 34 2-38 200-233 (350)
128 3g06_A SSPH2 (leucine-rich rep 86.1 0.36 1.2E-05 40.5 2.4 18 3-20 80-97 (622)
129 1ziw_A TOLL-like receptor 3; i 85.8 0.29 9.9E-06 39.6 1.7 33 3-38 48-80 (680)
130 3t6q_A CD180 antigen; protein- 85.7 0.43 1.5E-05 37.9 2.6 34 2-38 299-332 (606)
131 4eco_A Uncharacterized protein 85.7 0.43 1.5E-05 39.2 2.6 33 2-38 511-543 (636)
132 1ziw_A TOLL-like receptor 3; i 85.0 0.42 1.4E-05 38.6 2.3 8 30-37 608-615 (680)
133 3g06_A SSPH2 (leucine-rich rep 85.0 0.56 1.9E-05 39.4 3.1 32 3-38 260-291 (622)
134 3e4g_A ATP synthase subunit S, 85.0 0.31 1.1E-05 35.4 1.3 32 3-34 138-170 (176)
135 4ay9_X Follicle-stimulating ho 84.4 0.14 4.9E-06 38.6 -0.7 33 4-39 30-62 (350)
136 3goz_A Leucine-rich repeat-con 84.0 1.1 3.9E-05 33.6 4.2 13 4-16 80-92 (362)
137 2p1m_B Transport inhibitor res 84.0 1.4 4.9E-05 34.5 4.8 14 26-39 206-219 (594)
138 3j0a_A TOLL-like receptor 5; m 83.9 0.3 1E-05 41.4 1.0 34 2-38 71-104 (844)
139 3goz_A Leucine-rich repeat-con 83.8 0.87 3E-05 34.3 3.5 14 5-18 52-65 (362)
140 3un9_A NLR family member X1; l 83.7 0.76 2.6E-05 35.7 3.1 15 4-18 155-169 (372)
141 1io0_A Tropomodulin; LRR prote 82.4 1.1 3.7E-05 31.1 3.3 35 4-38 121-158 (185)
142 3rfe_A Platelet glycoprotein I 82.3 0.85 2.9E-05 30.6 2.6 28 2-29 53-83 (130)
143 3j0a_A TOLL-like receptor 5; m 82.2 0.43 1.5E-05 40.4 1.3 35 2-38 121-155 (844)
144 3rgz_A Protein brassinosteroid 82.2 0.95 3.3E-05 37.9 3.3 35 2-39 221-255 (768)
145 4eco_A Uncharacterized protein 81.6 0.62 2.1E-05 38.3 2.0 37 2-41 431-467 (636)
146 4ecn_A Leucine-rich repeat pro 81.1 0.82 2.8E-05 40.1 2.7 33 2-38 751-783 (876)
147 3cvr_A Invasion plasmid antige 79.3 1.1 3.7E-05 37.4 2.7 13 5-17 141-153 (571)
148 4ecn_A Leucine-rich repeat pro 79.0 1.3 4.5E-05 38.9 3.3 33 4-38 548-580 (876)
149 3sb4_A Hypothetical leucine ri 76.9 0.89 3.1E-05 33.7 1.4 33 3-38 225-257 (329)
150 3sb4_A Hypothetical leucine ri 75.6 0.5 1.7E-05 35.1 -0.3 32 2-36 295-326 (329)
151 3cvr_A Invasion plasmid antige 75.3 1.4 4.9E-05 36.6 2.4 28 4-38 80-107 (571)
152 2ra8_A Uncharacterized protein 74.4 2 6.7E-05 33.6 2.8 35 3-38 192-226 (362)
153 1jl5_A Outer protein YOPM; leu 73.2 1.5 5E-05 34.7 1.9 30 4-38 131-160 (454)
154 1jl5_A Outer protein YOPM; leu 71.8 2.2 7.5E-05 33.7 2.6 16 4-19 337-352 (454)
155 1s3a_A NADH-ubiquinone oxidore 46.6 3.2 0.00011 27.2 -0.5 32 6-37 19-51 (102)
156 1pgv_A TMD-1, tropomodulin TMD 42.9 25 0.00085 25.6 3.7 14 5-18 99-112 (197)
157 4h09_A Hypothetical leucine ri 36.4 14 0.00048 27.5 1.5 34 2-38 284-317 (379)
158 4fdw_A Leucine rich hypothetic 33.0 9.6 0.00033 29.8 0.1 37 2-38 269-307 (401)
159 4fdw_A Leucine rich hypothetic 33.0 17 0.00059 28.3 1.6 21 2-22 178-198 (401)
160 1onv_B Serine phosphatase FCP1 24.6 16 0.00053 23.9 0.0 14 90-103 35-48 (83)
161 4fs7_A Uncharacterized protein 23.8 16 0.00054 27.6 -0.1 9 3-11 319-327 (394)
162 4gt6_A Cell surface protein; l 23.5 21 0.00071 27.0 0.5 33 2-38 332-364 (394)
No 1
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.42 E-value=2.8e-07 Score=63.00 Aligned_cols=49 Identities=57% Similarity=1.039 Sum_probs=45.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSE 50 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~dsd 50 (106)
+|++|++|+|.+|+++..+.||..+|..+|+|++|+...+...++++++
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 6889999999999999999999999999999999999999999988754
No 2
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=3.1e-07 Score=71.00 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCceEeCCCCCCCC----hhhhHHHHHHHCCCCceecCccCCC
Q psy8459 5 NLKHVDLFNNDVTT----IENYREKVFELLPNLKYLDGFDAKN 43 (106)
Q Consensus 5 ~L~~L~L~gNPV~~----~~~YR~~V~~~LPqLkyLDg~~v~~ 43 (106)
+|+.|+|.+||||. .++||..|++.||+|++|||..|+.
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 89999999999996 5799999999999999999999865
No 3
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.24 E-value=3e-07 Score=63.77 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEA 46 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~ 46 (106)
+|++|++|+|.+||++..+.||.++|..+|+|++||+..+...++
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 578999999999999999999999999999999999988876554
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.16 E-value=5e-07 Score=69.26 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|++|+|+. ...+...++..||+|++|+.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 6677777777777765 22334445566677777664
No 5
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.15 E-value=1e-06 Score=62.12 Aligned_cols=47 Identities=34% Similarity=0.454 Sum_probs=42.7
Q ss_pred CCCCCCceEeCCCCCCCCh-------hhhHHHHHHHCCCCceecCccCCCCCCC
Q psy8459 1 KQLTNLKHVDLFNNDVTTI-------ENYREKVFELLPNLKYLDGFDAKNNEAP 47 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~-------~~YR~~V~~~LPqLkyLDg~~v~~~E~~ 47 (106)
.+|++|++|+|.+||++.. ..|+..+|..+|+|++||+..|+..++.
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~ 190 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDERE 190 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTT
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHH
Confidence 3689999999999999776 8899999999999999999999988874
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.04 E-value=5.1e-06 Score=63.60 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
+|++|++|+|.+|+++....|...+...||+++.++
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~ 336 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 336 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCE
T ss_pred cCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcch
Confidence 379999999999999999989999999999998654
No 7
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.96 E-value=5.4e-06 Score=55.47 Aligned_cols=38 Identities=61% Similarity=1.120 Sum_probs=35.1
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|+++..+.|+..+|..+|+|++||..
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 57899999999999999999999999999999999864
No 8
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.76 E-value=0.0004 Score=57.52 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
+|++|++|+|.+|+++..+.++..++..||+|++|+
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 578999999999999998889988999999999986
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.53 E-value=0.0014 Score=47.17 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCCCCceEeCCCCCCC----ChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459 2 QLTNLKHVDLFNNDVT----TIENYREKVFELLPNLKYLDGFDAKNNEA 46 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~----~~~~YR~~V~~~LPqLkyLDg~~v~~~E~ 46 (106)
+|++|++|+|.+||+. ....||.++....+.+..|||..|...+.
T Consensus 157 ~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~ 205 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDS 205 (229)
T ss_dssp TCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTC
T ss_pred CCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCc
Confidence 5789999999999984 35678999999999999999988776543
No 10
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.70 E-value=0.012 Score=38.86 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=16.8
Q ss_pred CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++. .+ .++..+|+|++|+.
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l 95 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLE----VLAEKCPNLTHLNL 95 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTH----HHHHHCTTCCEEEC
T ss_pred cCCCCCEEECCCCcccchHH----HHhhhCCCCCEEEC
Confidence 34555555555555554 22 24444555555544
No 11
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.67 E-value=0.012 Score=43.70 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
++++|++|+|.+|.++..+..-..++..+++|++|+...
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 578999999999999887777777888999999998643
No 12
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=95.39 E-value=0.0062 Score=42.43 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCCCCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|+ ++..+ .|..+|+|++|+..
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECT
T ss_pred hCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECC
Confidence 46777777777776 66654 35667777777653
No 13
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.39 E-value=0.012 Score=43.70 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=29.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|++|+|.+|.++..+..-..++..+++|++||...
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 467788888888888776666666778889999888643
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=95.37 E-value=0.011 Score=39.84 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=17.0
Q ss_pred CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++. .+ .++..+|+|++|+.
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L 102 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLD----MLAEKLPNLTHLNL 102 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCC----HHHHHCTTCCEEEC
T ss_pred cCCCCCEEECcCCcCchHHH----HHHhhCCCCCEEec
Confidence 34555555555555555 22 23444555555554
No 15
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.27 E-value=0.0084 Score=41.68 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=18.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .+|..|++|++|+.
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDL 88 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCcCCCEEECCCCCCCccCh---hHhCCcchhhEEEC
Confidence 35566666666666655432 13455566665554
No 16
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.16 E-value=0.0084 Score=41.33 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=19.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .+|..+|+|++|+.
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L 85 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSL 85 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CcccCCEEECCCCCcCccCh---hhccCCCCCCEEEC
Confidence 35566666666666655432 23455666666654
No 17
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.11 E-value=0.0087 Score=41.60 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=16.3
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. .+|..|++|++|+.
T Consensus 80 l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPR---GAFDNLKSLTHIYL 112 (174)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEEC
T ss_pred cchhhEEECCCCccceeCH---HHhccccCCCEEEe
Confidence 4555555555555554332 23444555555543
No 18
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.94 E-value=0.01 Score=40.83 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .+|..|++|++|+.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L 109 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPR---GAFDNLKSLTHIWL 109 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCCEEECCCCccCEeCH---HHhcCCCCCCEEEe
Confidence 46677777777777766533 24566777777664
No 19
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=94.89 E-value=0.018 Score=39.37 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|.+|.++..+... .|..+|+|++|+
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~--~l~~l~~L~~L~ 119 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLD--PLASLKSLTYLC 119 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGG--GGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcchhhH--hhhcCCCCCEEE
Confidence 344455555555444443321 234455555544
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=94.83 E-value=0.018 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=21.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.++... ...|..+|+|++|+..
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSI---LTKINTLPKVNSIDLS 144 (197)
T ss_dssp TCTTCCEEECCSSBCBGGG---HHHHTTCSSCCEEECC
T ss_pred CCCCCCEEEecCCccCcHh---HHHHhhCCCCCEEEcc
Confidence 4667777777777776521 2345667777777653
No 21
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.67 E-value=0.022 Score=43.70 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|++|.++..+... .++..||+|++|+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLS 204 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECT
T ss_pred hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECC
Confidence 4789999999999999876543 367889999999863
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=94.63 E-value=0.025 Score=41.94 Aligned_cols=33 Identities=30% Similarity=0.227 Sum_probs=18.1
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|+++... ...|..+|+|++|+.
T Consensus 286 l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFL 318 (347)
T ss_dssp CTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCCcC---hhHhhccccCCEEEc
Confidence 556666666666665432 124555666666554
No 23
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.25 E-value=0.02 Score=38.97 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=17.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++..+. .+|..+++|++|+.
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPN---GVFDKLTQLKELAL 107 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCccCEEECCCCCccccCH---HHhhCCcccCEEEC
Confidence 35566666666666655432 13444555555554
No 24
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=94.20 E-value=0.023 Score=41.69 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
.|++|++|+|.+|.++..+. |..||+|++|+..
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVN 93 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECC
T ss_pred hCCCCCEEECCCCccCCChh-----hccCCCCCEEECC
Confidence 46677777777777777654 6677777777653
No 25
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.19 E-value=0.032 Score=40.65 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=18.4
Q ss_pred CCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCcc
Q psy8459 5 NLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 5 ~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|+|++|+ ||. .+.. .++.||+|++|+-..
T Consensus 115 ~L~~L~Ls~C~~ITD-~Gl~--~L~~~~~L~~L~L~~ 148 (176)
T 3e4g_A 115 SMLEMEIISCGNVTD-KGII--ALHHFRNLKYLFLSD 148 (176)
T ss_dssp HCCEEEEESCTTCCH-HHHH--HGGGCTTCCEEEEES
T ss_pred CCCEEEcCCCCcCCH-HHHH--HHhcCCCCCEEECCC
Confidence 56677777666 333 2322 345567777666544
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=93.86 E-value=0.026 Score=39.24 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=18.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++..+. .+|..+|+|++|+.
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRL 131 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CccCCCEEEcCCCcCcccCH---hHhccCCcCCEEEC
Confidence 35566666666666654432 13445555555554
No 27
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=93.79 E-value=0.0018 Score=47.78 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=8.7
Q ss_pred CCCCceEeCCCCCCCCh
Q psy8459 3 LTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~ 19 (106)
|++|++|+|.+|+++..
T Consensus 149 l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTCCEEECTTSCCCBC
T ss_pred CCCCCEEECCCCcCcch
Confidence 44555555555555444
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=93.79 E-value=0.046 Score=40.78 Aligned_cols=30 Identities=40% Similarity=0.508 Sum_probs=13.4
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|.+|.++..+. |..+|+|++|+
T Consensus 128 l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~ 157 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNISP-----LAGLTNLQYLS 157 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcCcc-----ccCCCCccEEE
Confidence 3444444444444444332 34444444444
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.78 E-value=0.024 Score=39.90 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=16.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. ..|..+|+|++|+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPP---RTFDGLKSLRLLSL 109 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCCEEECCCCccCEeCH---HHhCCCCCCCEEEC
Confidence 34555555555555554321 13444555555543
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=93.75 E-value=0.032 Score=37.90 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=19.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++..+. .+|..+++|++|+.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPD---GVFDKLTKLTILYL 83 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CcccccEEECCCCcceEeCh---hHccCCCccCEEEC
Confidence 35566666666666655432 23455666666654
No 31
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=93.62 E-value=0.02 Score=40.91 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=8.3
Q ss_pred CCCCceEeCCCCCCCCh
Q psy8459 3 LTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~ 19 (106)
|++|++|+|.+|.++..
T Consensus 79 l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITEL 95 (220)
T ss_dssp CSSCCEEECCSSCCCCC
T ss_pred CcCCCEEECCCCcCCcc
Confidence 44455555555555443
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=93.59 E-value=0.053 Score=40.47 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=6.8
Q ss_pred CCCCceEeCCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~ 18 (106)
|++|++|+|.+|.++.
T Consensus 172 l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCccCc
Confidence 3444444444444443
No 33
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.52 E-value=0.018 Score=42.97 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|+.|+|++|.++..+. ..|..|++|++|+...
T Consensus 54 ~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCS
T ss_pred cccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCC
Confidence 46677777777777666432 2566777777777543
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=93.51 E-value=0.032 Score=38.77 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=15.6
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++..+. .+|..+++|++|+.
T Consensus 75 l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELAL 107 (208)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCcCEEECCCCcCCccCH---hHhcCccCCCEEEc
Confidence 4455555555555544322 13444555555554
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=93.49 E-value=0.038 Score=41.01 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=5.9
Q ss_pred CCCceEeCCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVTT 18 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~ 18 (106)
++|++|+|.+|.++.
T Consensus 156 ~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 156 TKLDTLSLEDNQISD 170 (291)
T ss_dssp TTCSEEECCSSCCCC
T ss_pred CCCCEEEccCCcccc
Confidence 333444444443333
No 36
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=93.47 E-value=0.024 Score=40.57 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=16.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .|..+++|++|+.
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L 142 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPR----GIERLTHLTHLAL 142 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEEC
T ss_pred cchhhCeEeccCCcccccCc----ccccCCCCCEEEC
Confidence 34555555555555554432 1344555555543
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=93.41 E-value=0.033 Score=40.59 Aligned_cols=32 Identities=34% Similarity=0.674 Sum_probs=14.0
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|.+|.++..+. .+|..+|+|++|+
T Consensus 180 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIW 211 (272)
T ss_dssp CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCH---HHHhCCcCCCEEE
Confidence 3444444444444444322 2334445555444
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=93.39 E-value=0.056 Score=40.11 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=5.4
Q ss_pred CCCceEeCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVT 17 (106)
Q Consensus 4 ~~L~~L~L~gNPV~ 17 (106)
++|++|+|.+|.++
T Consensus 90 ~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 90 KNLGWLFLDENKVK 103 (291)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCC
Confidence 33333333333333
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.34 E-value=0.026 Score=39.65 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|.|+..+. ..|..|++|++|+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLIL 85 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred cccCCCEEECCCCcCCEeCH---hHccCCCCCCEEEC
Confidence 35667777777777665432 24556677776665
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.28 E-value=0.068 Score=38.71 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++..+. ..|..+|+|++|+.
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPT---EALAPLRALQYLRL 232 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEEC
T ss_pred CcccccEeeCCCCcCCcCCH---HHcccCcccCEEec
Confidence 45666666666666665432 35666777777764
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=93.27 E-value=0.054 Score=40.04 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+ .|..+|+|++|+.
T Consensus 87 l~~L~~L~L~~n~i~~~~-----~~~~l~~L~~L~l 117 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDIS-----ALQNLTNLRELYL 117 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEC
T ss_pred CCcCCEEEccCCcccCch-----HHcCCCcCCEEEC
Confidence 444555555555444432 1444555555544
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=93.15 E-value=0.038 Score=39.63 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=5.8
Q ss_pred CCCceEeCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVT 17 (106)
Q Consensus 4 ~~L~~L~L~gNPV~ 17 (106)
++|++|+|.+|.++
T Consensus 131 ~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 131 TKLKELRLNTNQLQ 144 (251)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CcccEEECcCCcCC
Confidence 34444444444443
No 43
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.09 E-value=0.024 Score=39.52 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=5.9
Q ss_pred CCCceEeCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVT 17 (106)
Q Consensus 4 ~~L~~L~L~gNPV~ 17 (106)
++|++|+|.+|.++
T Consensus 54 ~~L~~L~Ls~N~l~ 67 (192)
T 1w8a_A 54 PHLVKLELKRNQLT 67 (192)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 34444444444443
No 44
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=93.04 E-value=0.033 Score=39.72 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=14.2
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++..+. .+|..+++|++|+.
T Consensus 80 l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 112 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQH---KMFKGLESLKTLML 112 (220)
T ss_dssp CTTCCEEECCSSCCCCCCG---GGGTTCSSCCEEEC
T ss_pred CCCCCEEECCCCccCccCH---hHhcCCcCCCEEEC
Confidence 4444444554444444321 12344444444443
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=93.03 E-value=0.074 Score=39.83 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=22.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.++..+. .+|..+++|++|+..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECT
T ss_pred CCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECC
Confidence 45667777777776665432 346667777777653
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=93.02 E-value=0.041 Score=39.49 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=8.9
Q ss_pred CCCCceEeCCCCCCCCh
Q psy8459 3 LTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~ 19 (106)
+++|++|+|.+|.++..
T Consensus 106 l~~L~~L~L~~N~l~~~ 122 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSL 122 (251)
T ss_dssp CTTCCEEECCSSCCCCC
T ss_pred cCCCCEEEcCCCcCCCc
Confidence 45555555555555443
No 47
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=93.01 E-value=0.066 Score=39.29 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=6.3
Q ss_pred HHHHCCCCceecC
Q psy8459 26 VFELLPNLKYLDG 38 (106)
Q Consensus 26 V~~~LPqLkyLDg 38 (106)
++..+|+|++|+.
T Consensus 163 ~~~~~~~L~~L~l 175 (336)
T 2ast_B 163 LLSSCSRLDELNL 175 (336)
T ss_dssp HHHHCTTCCEEEC
T ss_pred HHhcCCCCCEEcC
Confidence 3444555555543
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=92.97 E-value=0.027 Score=44.22 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=16.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .+|..|++|++|+.
T Consensus 98 ~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVA 131 (635)
T ss_dssp TCTTCCEEECTTCCCCEECG---GGGTTCTTCCEEEC
T ss_pred CCCCCCEEEccCCcCCCCCH---HHhcCCCCCCEEEC
Confidence 34555555555555554332 23445555555543
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=92.92 E-value=0.044 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=18.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.|+.... ..|..+|+|++|+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSL 135 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEEC
Confidence 35566666666666655421 13455566665554
No 50
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.82 E-value=0.033 Score=37.79 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=21.1
Q ss_pred CCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 5 NLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 5 ~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|+|++|.|+.++. .+|..+|+|++|+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP---GLLDALPALRTAHL 62 (130)
T ss_dssp TCSEEECTTSCCSSCCT---TTGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCh---hhhhhccccCEEEe
Confidence 67777777777777643 35677777777653
No 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=92.78 E-value=0.025 Score=39.41 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++++|++|+|.+|.++..+. ..|..+|+|++|+..
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISN---KMFLGLHQLKTLNLY 110 (192)
T ss_dssp TCTTCCEEECCSCCCCEECS---SSSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCcCCccCH---HHhcCCCCCCEEECC
Confidence 46677777777777766432 235567777777653
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=92.77 E-value=0.044 Score=39.75 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.6
Q ss_pred CCceEeCCCCCC
Q psy8459 5 NLKHVDLFNNDV 16 (106)
Q Consensus 5 ~L~~L~L~gNPV 16 (106)
+|++|+|.+|.+
T Consensus 86 ~L~~L~l~~n~l 97 (270)
T 2o6q_A 86 NLETLWVTDNKL 97 (270)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcC
Confidence 333333333333
No 53
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=92.70 E-value=0.025 Score=39.32 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+ .|..+++|++|+.
T Consensus 47 l~~L~~L~ls~n~l~~l~-----~~~~l~~L~~L~l 77 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-----SLSGMENLRILSL 77 (198)
T ss_dssp TTTCSEEECSEEEESCCC-----CHHHHTTCCEEEE
T ss_pred CCCCCEEECCCCCCcccc-----ccccCCCCCEEEC
Confidence 567777777777776654 3455666766654
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=92.68 E-value=0.049 Score=41.42 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=17.1
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+..-..-+..+|+|++||.
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 3455556666666555544321111244666666654
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=92.60 E-value=0.05 Score=40.43 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=15.8
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|+.|+|.+|.++..+. .+|..+++|++|+.
T Consensus 147 l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPA---GLLNGLENLDTLLL 179 (290)
T ss_dssp CTTCCEEECTTSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred ccCCCEEECCCCcCCccCH---HHhcCcCCCCEEEC
Confidence 3455555555555544322 23445555555543
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=92.52 E-value=0.053 Score=39.33 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=6.3
Q ss_pred CCCceEeCCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVTT 18 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~ 18 (106)
++|++|+|.+|.++.
T Consensus 157 ~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 157 TSLKELRLYNNQLKR 171 (270)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred cccceeEecCCcCcE
Confidence 344444444444433
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=92.38 E-value=0.065 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++++|++|+|.+|.++..+.. .|..+|+|++|+..
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYS 231 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECT
T ss_pred CCCCCCEEECCCCccCccChh---hccCcccCCEeECC
Confidence 456666777777666654332 24566777776653
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=92.35 E-value=0.031 Score=43.87 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|++|.|+..+. .+|..|++|++|+..
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILT 108 (635)
T ss_dssp TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred CCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEcc
Confidence 46677777777777665432 246667777777653
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=92.31 E-value=0.062 Score=39.09 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=8.5
Q ss_pred CCCCceEeCCCCCCCCh
Q psy8459 3 LTNLKHVDLFNNDVTTI 19 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~ 19 (106)
|++|++|+|.+|.++..
T Consensus 62 l~~L~~L~l~~n~l~~~ 78 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI 78 (272)
T ss_dssp CTTCCEEECTTSCCCCC
T ss_pred CCCCcEEECCCCCCCCc
Confidence 44555555555555443
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=92.26 E-value=0.077 Score=37.77 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=17.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++.... ..|..+++|++|+.
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 136 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSL 136 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEEC
T ss_pred CCcCCCEEECCCCcCCeECH---hHcCCCccCCEEEC
Confidence 35566666666666655421 12344555555554
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=92.24 E-value=0.057 Score=40.11 Aligned_cols=12 Identities=25% Similarity=0.027 Sum_probs=5.5
Q ss_pred HHHCCCCceecC
Q psy8459 27 FELLPNLKYLDG 38 (106)
Q Consensus 27 ~~~LPqLkyLDg 38 (106)
|..+++|++|+.
T Consensus 120 ~~~l~~L~~L~L 131 (290)
T 1p9a_G 120 LRGLGELQELYL 131 (290)
T ss_dssp TTTCTTCCEEEC
T ss_pred HcCCCCCCEEEC
Confidence 344444554443
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=92.22 E-value=0.063 Score=39.85 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
.+++|++|+|.+|.++..+.. |..+|+|++|+..
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPAG----LPDLKLLQVVYLH 272 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT----GGGCTTCCEEECC
T ss_pred CCCCCCEEECCCCcCeecChh----hhcCccCCEEECC
Confidence 356677777777777665442 5667777777653
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=92.16 E-value=0.042 Score=40.87 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=16.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++... ...|..+++|++|+.
T Consensus 33 ~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 65 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQIS---AADLAPFTKLELLNL 65 (317)
T ss_dssp GGGCSEEECTTSCCCCCC---HHHHTTCTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCC---HHHhhCCCcCCEEEC
Confidence 345555555555555431 124455555555554
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=92.15 E-value=0.093 Score=40.98 Aligned_cols=30 Identities=47% Similarity=0.706 Sum_probs=13.1
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|.+|.++..+. |..+|+|++|+
T Consensus 111 l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~ 140 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-----LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCSEEE
T ss_pred CCCCCEEECCCCCCCCChH-----HcCCCCCCEEE
Confidence 3444444444444444322 34444444444
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=92.05 E-value=0.071 Score=40.79 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=16.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. .+|..+|+|++|+.
T Consensus 370 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 402 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWL 402 (455)
T ss_dssp CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred cccccEEECCCCccccCCH---hHhccCCcccEEEc
Confidence 4555555555555554332 13445555555543
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=92.04 E-value=0.06 Score=40.33 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++++|++|+|.+|.++..+. .+|..+|+|++|+..
T Consensus 275 ~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 275 QISGLLELEFSRNQLKSVPD---GIFDRLTSLQKIWLH 309 (353)
T ss_dssp TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred cccCCCEEECCCCCCCccCH---HHHhcCCCCCEEEee
Confidence 46788888888888887654 356778888888753
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.89 E-value=0.13 Score=40.58 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|+++.. --..++..+|+|++|+-
T Consensus 486 ~~~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSER--AIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp CCTTCCEEEEESCCCBHH--HHHHHHHHCSSCCEEEE
T ss_pred cCcccCeeeccCCCCcHH--HHHHHHHhcCccCeeEC
Confidence 578899999999987432 12346678999999875
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=91.76 E-value=0.044 Score=40.54 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=20.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHH-HHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYRE-KVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~-~V~~~LPqLkyLDg~ 39 (106)
++++|++|+|++|++........ .++..+|+|++|+..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 45666677777666544322111 123456777777653
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=91.72 E-value=0.062 Score=40.53 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|++|+|.+|.++..+. .|..|++|++|+...
T Consensus 125 ~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 125 QFAGLETLTLARNPLRALPA----SIASLNRLRELSIRA 159 (328)
T ss_dssp GGTTCSEEEEESCCCCCCCG----GGGGCTTCCEEEEEE
T ss_pred ccCCCCEEECCCCccccCcH----HHhcCcCCCEEECCC
Confidence 35677777777777765543 366677777776543
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=91.69 E-value=0.061 Score=40.58 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=22.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|++|+|.+|.++..+. .|..+|+|++|+...
T Consensus 204 ~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRG 238 (328)
T ss_dssp GCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTT
T ss_pred CCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcC
Confidence 35667777777777766543 356677777776543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.64 E-value=0.054 Score=43.34 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=14.9
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|++|.++.... |..+|+|++|+.
T Consensus 57 l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L 87 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD-----LESLSTLRTLDL 87 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE-----CTTCTTCCEEEC
T ss_pred CCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEe
Confidence 4455555555555543322 444555555543
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=91.54 E-value=0.098 Score=38.67 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=23.4
Q ss_pred CCCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+|++|++|+|.+|.++.. +. .|..+|+|++|+...
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSK 109 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCS
T ss_pred cCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCC
Confidence 467777777777777664 22 456677777777643
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=91.48 E-value=0.076 Score=39.27 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=18.7
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++..+. .|..+|+|++|+.
T Consensus 239 l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l 270 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPG----GLADHKYIQVVYL 270 (330)
T ss_dssp STTCCEEECCSSCCSSCCT----TTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcCccCCh----hhccCCCcCEEEC
Confidence 4566666666666665443 2455666666654
No 74
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=91.45 E-value=0.13 Score=42.99 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
.|++|+.|+|++|.++..+. |..||+|++|+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L 94 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFL 94 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEEC
T ss_pred cCCCCCEEEeeCCCCCCChh-----hccCCCCCEEEC
Confidence 35666667776666666544 556666666654
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=91.40 E-value=0.075 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=17.6
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|+++..+.. +|..+|+|++|+.
T Consensus 443 l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l 475 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDG---IFDRLTSLQKIWL 475 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCccCHH---HhccCCcccEEEC
Confidence 45555555555555554432 3455555655543
No 76
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=91.38 E-value=0.14 Score=38.66 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
.+++|++|+|.+|+++..+.. +..+|+|++|+.
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~L 325 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYL 325 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEEC
T ss_pred CCCCCCEEECCCCcceecCcc----ccccCcCCEEEC
Confidence 467777777777777765432 455677777765
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=91.31 E-value=0.095 Score=39.66 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=14.9
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. .+|..+|+|++|+.
T Consensus 116 l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSM 148 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcCCH---HHhcCCCCCcEEEC
Confidence 4445555555554444322 13344555555543
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=91.26 E-value=0.08 Score=41.07 Aligned_cols=33 Identities=39% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. .+|..+++|++|+.
T Consensus 79 l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 111 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPL---GVFTGLSNLTKLDI 111 (477)
T ss_dssp CTTCCEEECCSSCCCSCCT---TSSTTCTTCCEEEC
T ss_pred CccCCEEECCCCcCCccCc---ccccCCCCCCEEEC
Confidence 4445555555554444321 12334444444443
No 79
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=91.25 E-value=0.17 Score=39.54 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=15.4
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. |..+|+|++|+.
T Consensus 89 l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L 119 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-----LANLTNLTGLTL 119 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEEC
T ss_pred cccCCEEECCCCccccChh-----hcCCCCCCEEEC
Confidence 4444555555554444332 455555555554
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=91.25 E-value=0.13 Score=36.98 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=17.9
Q ss_pred CCCCCceEeCCCCCCCCh--hhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTI--ENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~--~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++.. +. .|..+++|++|+.
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~L 156 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDL 156 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEEC
T ss_pred cCCCCCEEECcCCccceecCch----hhccCCCCCEEEC
Confidence 345666666666665542 22 3455666666654
No 81
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.23 E-value=0.085 Score=43.57 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=13.9
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|++|.++..+ .|..||+|++|+
T Consensus 485 l~~L~~L~Ls~N~l~~lp-----~l~~l~~L~~L~ 514 (567)
T 1dce_A 485 LRCLEVLQASDNALENVD-----GVANLPRLQELL 514 (567)
T ss_dssp CTTCCEEECCSSCCCCCG-----GGTTCSSCCEEE
T ss_pred CCCCCEEECCCCCCCCCc-----ccCCCCCCcEEE
Confidence 444455555555444443 234444555444
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=91.19 E-value=0.14 Score=40.13 Aligned_cols=35 Identities=34% Similarity=0.601 Sum_probs=21.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|++|.++..+. ..|..+++|++|+..
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCH---HHHTTCTTCCEEECT
T ss_pred ccccCCEEECCCCccCccCH---HHhccCCCCcEEECC
Confidence 45667777777776665432 246677777777653
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=91.18 E-value=0.091 Score=38.05 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=6.0
Q ss_pred CCCceEeCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVT 17 (106)
Q Consensus 4 ~~L~~L~L~gNPV~ 17 (106)
++|++|+|.+|.++
T Consensus 105 ~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQ 118 (285)
T ss_dssp TTCCEEECTTSCCC
T ss_pred cCCCEEECCCCcCC
Confidence 34444444444443
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=90.96 E-value=0.084 Score=40.12 Aligned_cols=34 Identities=41% Similarity=0.607 Sum_probs=16.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.|+..+. ..|..|++|++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~L 95 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDL 95 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred cccccCEEECCCCcCCccCh---hhccCCCCCCEEEC
Confidence 45555555555555554331 13344555555543
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=90.85 E-value=0.22 Score=39.06 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v 41 (106)
.|++|++|+|.+|.++..+.. ..+|..+|+|++|+....
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKT-GEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHH-HHHGGGCTTCCEEECTTC
T ss_pred ccccCcEEEccCCcccccccc-hhhhhcCCCCCEEECCCC
Confidence 467888888888888776432 235788888888886443
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=90.82 E-value=0.21 Score=39.06 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=24.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|+.|+|.+|.++..+... ..|..+|+|++|+..
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECC
T ss_pred cCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECC
Confidence 4677777777777777643322 356778888888764
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.57 E-value=0.18 Score=40.94 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=24.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
.|++|++|+|++|+++..+.. |..+|+|++|+..
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~----~~~l~~L~~L~L~ 332 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYLD 332 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCccCcc----cccCCCCCEEECC
Confidence 467888888888888876542 4566777777653
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=90.56 E-value=0.11 Score=38.49 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.++.... ..|..+|+|++|+..
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHE---KAFSPLRKLQKLYIS 110 (332)
T ss_dssp TCTTCCEEECCSSCCCEECG---GGSTTCTTCCEEECC
T ss_pred CCCCCcEEECCCCccCccCH---hHhhCcCCCCEEECC
Confidence 46677777777777765411 245667777777654
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=90.54 E-value=0.022 Score=47.56 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=21.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|+++..+ .|..||+|+.|+.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L 204 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLEL 204 (605)
T ss_dssp TCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEc
Confidence 4677777777777776653 2556777776664
No 90
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=90.43 E-value=0.12 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=9.3
Q ss_pred CCCCceEeCCCCCCCChh
Q psy8459 3 LTNLKHVDLFNNDVTTIE 20 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~ 20 (106)
|++|++|+|.+|.++..+
T Consensus 184 l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CSSCCEEECTTSCCSSCC
T ss_pred ccccCeecCCCCcCcccc
Confidence 445555555555555444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=90.34 E-value=0.34 Score=35.45 Aligned_cols=13 Identities=38% Similarity=0.370 Sum_probs=5.9
Q ss_pred HHHHCCCCceecC
Q psy8459 26 VFELLPNLKYLDG 38 (106)
Q Consensus 26 V~~~LPqLkyLDg 38 (106)
++..+|+|++|+.
T Consensus 217 ~~~~~~~L~~L~l 229 (336)
T 2ast_B 217 LVRRCPNLVHLDL 229 (336)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHhhCCCCCEEeC
Confidence 3444445554443
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=90.31 E-value=0.091 Score=40.87 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=18.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|+++..+. ..|..+|+|++|+..
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLG 179 (452)
T ss_dssp SCTTCCEEECCSCCCCEECT---TTTTTCTTCCEEECC
T ss_pred ccCCCCEEECCCCCcceeCH---hHHhcCCcccEEeCC
Confidence 35566666666666655432 234455555555543
No 93
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=90.27 E-value=0.079 Score=38.67 Aligned_cols=34 Identities=35% Similarity=0.618 Sum_probs=16.6
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++..+.. ..|..+++|++|+.
T Consensus 100 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l 133 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDI 133 (306)
T ss_dssp CTTCCEEECTTSEEESSTTT--TTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcccccccc--hhhhhccCCCEEEC
Confidence 45555555555555443321 13445555555554
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.21 E-value=0.12 Score=42.02 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=14.9
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++..+. .+|..+|+|++|+.
T Consensus 122 l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L 154 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSM 154 (597)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred CCCCCEEEeeCCCCCCCCH---HHhccCCCCCEEEe
Confidence 4445555555555444322 13344455555543
No 95
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=90.19 E-value=0.13 Score=40.95 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=7.7
Q ss_pred CCCCceEeCCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~ 18 (106)
|++|++|+|.+|.++.
T Consensus 79 l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTCCEEECTTCCCCC
T ss_pred hhhcCEeECCCCcccc
Confidence 4445555555554444
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=90.05 E-value=0.15 Score=37.88 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
.+|++|++|+|++|.++.... |..+|+|++|+...
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNN 89 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCS
T ss_pred hCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcC
Confidence 368999999999999987654 78899999998743
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=89.86 E-value=0.12 Score=41.19 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=16.7
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD 37 (106)
|++|++|+|.+|.++..+.. +|..+|+|++|+
T Consensus 472 l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~ 503 (562)
T 3a79_B 472 LQALQELNVASNQLKSVPDG---VFDRLTSLQYIW 503 (562)
T ss_dssp SCCCSEEECCSSCCCCCCTT---STTTCTTCCCEE
T ss_pred CCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEE
Confidence 45555555555555554432 345555555554
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=89.80 E-value=0.13 Score=38.07 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHC-----CCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELL-----PNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~L-----PqLkyLDg 38 (106)
++++|++|+|.+|.++..+. .|..+ |+|++|+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~----~~~~l~~~~~~~L~~L~L 156 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDA----WLAELQQWLKPGLKVLSI 156 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSS----HHHHHHTTCCTTCCEEEE
T ss_pred cCCCccEEEccCCCCcchhH----HHHHHHHhhcCCCcEEEe
Confidence 46777778888777776642 22222 66766654
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=89.77 E-value=0.13 Score=36.96 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++++|++|+|.+|.++..+. ..|..+++|++|+.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l 107 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVA 107 (276)
T ss_dssp TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEEC
T ss_pred CCcCCCEEECCCCccCccCh---hhhcCCccccEEEC
Confidence 35566666666666654321 13344455555543
No 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=89.73 E-value=0.073 Score=39.64 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCCCCceEeCCC-CCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459 2 QLTNLKHVDLFN-NDVTTIENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 2 ~L~~L~~L~L~g-NPV~~~~~YR~~V~~~LPqLkyLDg~~ 40 (106)
.+++|+.|+|.+ |.++..+. ..|..|++|++|+...
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~---~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVK 65 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCS
T ss_pred CCCCeeEEEccCCCCCCCcCh---hHhccccCCCEEECCC
Confidence 467899999996 99988653 2577899999998744
No 101
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.72 E-value=0.36 Score=33.63 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=16.7
Q ss_pred CCCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg 38 (106)
.++|++|+|.+|.|.... .+=...+...++|++|+.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 345555555555554421 112223444455555543
No 102
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=89.68 E-value=0.12 Score=40.04 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.|+..+. ..|..|++|++|+.
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEI---GAFNGLANLNTLEL 119 (440)
T ss_dssp SCSSCCEEECCSSCCCEECG---GGGTTCSSCCEEEC
T ss_pred CCCCCCEEECCCCcCCccCh---hhccCCccCCEEEC
Confidence 34555555555555544321 13444555555544
No 103
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=89.57 E-value=0.16 Score=38.83 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=16.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++.... ..+|..+++|++|+.
T Consensus 128 l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDL 161 (455)
T ss_dssp CTTCCEEECCSSBCCSCCC--CGGGGGCTTCCEEEC
T ss_pred cccCCEEECCCCccCccCc--ccccCCCCcccEEeC
Confidence 4555555555555544311 012455666666654
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=89.43 E-value=0.17 Score=40.12 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=5.4
Q ss_pred CCCceEeCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVT 17 (106)
Q Consensus 4 ~~L~~L~L~gNPV~ 17 (106)
++|++|+|.+|.++
T Consensus 85 ~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 85 TNLTYLACDSNKLT 98 (457)
T ss_dssp TTCSEEECCSSCCS
T ss_pred CCCCEEECcCCCCc
Confidence 33333333333333
No 105
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=89.34 E-value=0.2 Score=37.23 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCCCceEeCCCCCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~-~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++ ..+. .|..+|+|++|+.
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L 275 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNV 275 (313)
T ss_dssp CTTCCEEECCSSCCEECCCG----GGGGCTTCCEEEC
T ss_pred cCCCCEEECcCCcccCcCCh----HHhcCcCCCEEEC
Confidence 455555666655554 2332 3455666666654
No 106
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=89.33 E-value=0.18 Score=39.22 Aligned_cols=13 Identities=38% Similarity=0.205 Sum_probs=6.7
Q ss_pred HHHHCCCCceecC
Q psy8459 26 VFELLPNLKYLDG 38 (106)
Q Consensus 26 V~~~LPqLkyLDg 38 (106)
.|..+++|++|+.
T Consensus 237 ~~~~l~~L~~L~L 249 (452)
T 3zyi_A 237 SFHGLSSLKKLWV 249 (452)
T ss_dssp GGTTCTTCCEEEC
T ss_pred cccCccCCCEEEe
Confidence 3445555555544
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=89.15 E-value=0.16 Score=40.45 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=4.0
Q ss_pred HHCCCCceec
Q psy8459 28 ELLPNLKYLD 37 (106)
Q Consensus 28 ~~LPqLkyLD 37 (106)
..+++|++|+
T Consensus 143 ~~l~~L~~L~ 152 (562)
T 3a79_B 143 GNLTKLTFLG 152 (562)
T ss_dssp GGCTTCCEEE
T ss_pred cccCcccEEe
Confidence 3344444433
No 108
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=89.08 E-value=0.16 Score=37.75 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++++|++|+|.+|.++..... |..+|+|++|+..
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLR 252 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECC
T ss_pred cCCCCCEEECCCCceeeecCc----ccccCCCCEEECc
Confidence 578899999999988764332 5678899988864
No 109
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=89.00 E-value=0.16 Score=39.77 Aligned_cols=10 Identities=50% Similarity=0.561 Sum_probs=4.1
Q ss_pred HHCCCCceec
Q psy8459 28 ELLPNLKYLD 37 (106)
Q Consensus 28 ~~LPqLkyLD 37 (106)
..|++|++|+
T Consensus 146 ~~l~~L~~L~ 155 (570)
T 2z63_A 146 SNLTNLEHLD 155 (570)
T ss_dssp GGCTTCCEEE
T ss_pred cccCCCCEEe
Confidence 3344444443
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=88.96 E-value=0.31 Score=34.33 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=16.7
Q ss_pred CCCceEeCCCCC-CCChhhhHHHHHHHC-CCCceecC
Q psy8459 4 TNLKHVDLFNND-VTTIENYREKVFELL-PNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNP-V~~~~~YR~~V~~~L-PqLkyLDg 38 (106)
++|++|+|.+|+ ++..+. .+|..+ ++|++|+.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDV 212 (239)
T ss_dssp CEEEEEECTTCTTCCEECT---TTTTTCSBCCSEEEC
T ss_pred CCCCEEEcCCCCCcccCCH---HHhhccccCCcEEEC
Confidence 456666666664 554322 134445 66666654
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=88.64 E-value=0.21 Score=39.61 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=19.3
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+ |..+|+|++|+.
T Consensus 104 ~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l 134 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNC 134 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC------CTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCeec------CCCCCcCCEEEC
Confidence 4566777777777666653 456666666654
No 112
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=88.49 E-value=0.17 Score=40.34 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++. .+. .|..|++|++|+.
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~L 160 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDL 160 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEEC
T ss_pred CCCCCEEeCCCCcccceechH----hHhhcCCCCEEEc
Confidence 4444444444444442 122 3455566665554
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=88.16 E-value=0.27 Score=41.60 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|++|.++..+. .|..|++|++|+.
T Consensus 269 l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L 300 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYF 300 (727)
T ss_dssp GTTCCEEECTTSCCSSCCS----SGGGGTTCSEEEC
T ss_pred CCCCCEEeCcCCcCCccCh----hhcCCCCCCEEEC
Confidence 4455555555555554432 2344555555544
No 114
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=87.98 E-value=0.22 Score=39.04 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=7.5
Q ss_pred CCCCceEeCCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~ 18 (106)
|++|++|+|.+|.++.
T Consensus 469 l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp CTTCCEEECTTSCCCE
T ss_pred ccCCCEEECCCCcccc
Confidence 4444444444444443
No 115
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=87.84 E-value=0.26 Score=41.27 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=24.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|++|.++........++..+++|++|+..
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 186 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence 46677777777777766544444456667777777653
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=87.80 E-value=0.53 Score=35.87 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=19.2
Q ss_pred CCCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++... .+-..+|..+|+|++|+.
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 556666666666665421 111224555666666664
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=87.74 E-value=0.12 Score=41.13 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=6.5
Q ss_pred CCCCceEeCCCCCC
Q psy8459 3 LTNLKHVDLFNNDV 16 (106)
Q Consensus 3 L~~L~~L~L~gNPV 16 (106)
+++|++|+|.+|++
T Consensus 448 l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 448 LPALQHLNLQGNHF 461 (606)
T ss_dssp CTTCCEEECTTCBC
T ss_pred CCCCCEEECCCCCC
Confidence 34444444444444
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.37 E-value=0.27 Score=39.28 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=17.9
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|++|.++..+.- |..+|+|++|+.
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~L 221 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISL 221 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG----GGGGTTCSEEEC
T ss_pred CCCCCEEECCCCCCCCCCHh----HcCCCCccEEEe
Confidence 55666666666666554331 445566666654
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=87.24 E-value=0.13 Score=40.50 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=8.4
Q ss_pred CCCCceEeCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVT 17 (106)
Q Consensus 3 L~~L~~L~L~gNPV~ 17 (106)
||+|++|.|.+|.++
T Consensus 251 ~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCCEEEEESCTTH
T ss_pred CCCcCEEeCCCCCCc
Confidence 455555555555554
No 120
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=86.98 E-value=0.39 Score=37.15 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=19.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+ ...|..+++|++|+.
T Consensus 150 ~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIP---TEALSHLHGLIVLRL 183 (477)
T ss_dssp TCTTCCEEEEESCCCSSCC---HHHHTTCTTCCEEEE
T ss_pred CCCCCCEEECCCCcCcccC---hhHhcccCCCcEEeC
Confidence 3455666666666655543 235666666666654
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=86.89 E-value=0.74 Score=35.04 Aligned_cols=35 Identities=14% Similarity=-0.078 Sum_probs=17.2
Q ss_pred CCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+|.+|.++... .+-...|..+|+|++|+.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 35555555555554421 122234555666666654
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=86.75 E-value=0.95 Score=35.63 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=18.1
Q ss_pred CCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCcc
Q psy8459 3 LTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFD 40 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~ 40 (106)
+++|++|+|.+|.++.. ...=..++..+|+|++|+...
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 34555555555555421 111233555666666665543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=86.70 E-value=0.21 Score=42.29 Aligned_cols=34 Identities=35% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.++..+. .|..|++|++|+..
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVE 324 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECT
T ss_pred CCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCC
Confidence 46788888888888887765 26778888888753
No 124
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=86.55 E-value=0.5 Score=36.75 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=19.3
Q ss_pred CCCCceEeCCCCCCCChhh-hHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIEN-YREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~-YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.|+...- .=..++..+|+|++||.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence 4566666666666654321 12223445677777664
No 125
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=86.48 E-value=0.15 Score=36.01 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=6.8
Q ss_pred CCCCceEeCCCCCCCC
Q psy8459 3 LTNLKHVDLFNNDVTT 18 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~ 18 (106)
|++|++|+|.+|.++.
T Consensus 104 l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM 119 (239)
T ss_dssp CTTCCEEEEEEECCCS
T ss_pred CCCCCEEeCCCCCCcc
Confidence 3444444444444433
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=86.40 E-value=0.24 Score=38.94 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=6.7
Q ss_pred CCCCceEeCCCCCC
Q psy8459 3 LTNLKHVDLFNNDV 16 (106)
Q Consensus 3 L~~L~~L~L~gNPV 16 (106)
|++|+.|+|.+|++
T Consensus 480 ~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCSC
T ss_pred CCCcCEEECcCCCC
Confidence 34444444444444
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=86.37 E-value=0.12 Score=39.09 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|+.|+|++|.|+..+.. +|..|++|+.|..
T Consensus 200 ~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 200 GASGPVILDISRTRIHSLPSY---GLENLKKLRARST 233 (350)
T ss_dssp TEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTC
T ss_pred cCcccchhhcCCCCcCccChh---hhccchHhhhccC
Confidence 567899999999999887652 3444555544443
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=86.06 E-value=0.36 Score=40.53 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=8.6
Q ss_pred CCCCceEeCCCCCCCChh
Q psy8459 3 LTNLKHVDLFNNDVTTIE 20 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~ 20 (106)
+++|++|+|++|.++..+
T Consensus 80 l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp CTTCCEEEECSCCCSCCC
T ss_pred CCCCCEEEcCCCcCCcCC
Confidence 344555555555554433
No 129
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=85.79 E-value=0.29 Score=39.60 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=16.2
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.++.... ..|..|++|++|+.
T Consensus 48 l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNL 80 (680)
T ss_dssp GTTCSEEECCSSCCCCCCT---THHHHCTTCCEEEC
T ss_pred CCcCcEEECCCCccCccCH---HHHhcccCcCEEEC
Confidence 4455555555555544311 23455555555554
No 130
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=85.71 E-value=0.43 Score=37.95 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=17.9
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++.... ..|..+|+|++|+.
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSI 332 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEEC
T ss_pred ccccCCEEECccCCcCcCch---hhhhccCcCCEEEC
Confidence 34566666666666654321 23445555555554
No 131
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=85.67 E-value=0.43 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=20.5
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++..+. .|..+++|++|+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L 543 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPT----QPLNSSTLKGFGI 543 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCC----GGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCCcCh----hhhcCCCCCEEEC
Confidence 46677777777777765433 2445666666654
No 132
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=85.03 E-value=0.42 Score=38.64 Aligned_cols=8 Identities=50% Similarity=0.625 Sum_probs=3.2
Q ss_pred CCCCceec
Q psy8459 30 LPNLKYLD 37 (106)
Q Consensus 30 LPqLkyLD 37 (106)
+|+|++|+
T Consensus 608 ~~~L~~l~ 615 (680)
T 1ziw_A 608 FRNLTELD 615 (680)
T ss_dssp HTTCSEEE
T ss_pred ccccCEEE
Confidence 34444333
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=84.96 E-value=0.56 Score=39.37 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=20.7
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|.+|.++..+. .|..||+|++|+.
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L 291 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNL 291 (622)
T ss_dssp CTTCCEEECCSSCCCSCCG----GGGGSCTTCEEEC
T ss_pred cccCcEEeCCCCCCCcCCH----HHhhccccCEEEe
Confidence 4566677777777665543 3566777777764
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=84.95 E-value=0.31 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=14.3
Q ss_pred CCCCceEeCCCCC-CCChhhhHHHHHHHCCCCc
Q psy8459 3 LTNLKHVDLFNND-VTTIENYREKVFELLPNLK 34 (106)
Q Consensus 3 L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLk 34 (106)
|++|++|+|++|| |+...--..++-++||+|+
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 4455555555544 3333223344444555544
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=84.37 E-value=0.14 Score=38.58 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=21.9
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
++|++|+|.+|.|+..+. .+|..|++|++|+..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls 62 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEIS 62 (350)
T ss_dssp TTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEE
T ss_pred CCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECc
Confidence 467777777777776532 256677777777653
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=83.96 E-value=1.1 Score=33.61 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=5.2
Q ss_pred CCCceEeCCCCCC
Q psy8459 4 TNLKHVDLFNNDV 16 (106)
Q Consensus 4 ~~L~~L~L~gNPV 16 (106)
++|++|+|.+|.+
T Consensus 80 ~~L~~L~Ls~n~l 92 (362)
T 3goz_A 80 ANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECCSSCG
T ss_pred CCccEEECcCCcC
Confidence 3344444444443
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=83.96 E-value=1.4 Score=34.53 Aligned_cols=14 Identities=36% Similarity=0.282 Sum_probs=8.6
Q ss_pred HHHHCCCCceecCc
Q psy8459 26 VFELLPNLKYLDGF 39 (106)
Q Consensus 26 V~~~LPqLkyLDg~ 39 (106)
++..+|+|++|+..
T Consensus 206 l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 206 LVTRCPNLKSLKLN 219 (594)
T ss_dssp HHHHCTTCCEEECC
T ss_pred HHHhCCCCcEEecC
Confidence 44556777777654
No 138
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=83.94 E-value=0.3 Score=41.35 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=16.5
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|.+|.++... ...|..|++|++|+.
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLH---PDAFQGLFHLFELRL 104 (844)
T ss_dssp SCTTCCEEECTTCCCCEEC---TTSSCSCSSCCCEEC
T ss_pred CCCCCCEEECCCCcCcccC---HhHccCCcccCEeeC
Confidence 3455566666655554431 113444555555544
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=83.84 E-value=0.87 Score=34.27 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=7.0
Q ss_pred CCceEeCCCCCCCC
Q psy8459 5 NLKHVDLFNNDVTT 18 (106)
Q Consensus 5 ~L~~L~L~gNPV~~ 18 (106)
+|++|+|++|.++.
T Consensus 52 ~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 52 SVTSLNLSGNSLGF 65 (362)
T ss_dssp TCCEEECCSSCGGG
T ss_pred ceeEEECcCCCCCH
Confidence 45555555555443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=83.69 E-value=0.76 Score=35.71 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=7.7
Q ss_pred CCCceEeCCCCCCCC
Q psy8459 4 TNLKHVDLFNNDVTT 18 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~ 18 (106)
++|++|+|.+|.|+.
T Consensus 155 ~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 155 CQITTLRLSNNPLTA 169 (372)
T ss_dssp CCCCEEECCSSCCHH
T ss_pred CccceeeCCCCCCCh
Confidence 445555555555543
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=82.39 E-value=1.1 Score=31.11 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=16.3
Q ss_pred CCCceEeC--CCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDL--FNNDVTTIE-NYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L--~gNPV~~~~-~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+| .+|+|.... ..=..++...++|++|+.
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 45555555 555554421 112224444455555553
No 142
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.29 E-value=0.85 Score=30.62 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCCCCceEeCCCCCC---CChhhhHHHHHHH
Q psy8459 2 QLTNLKHVDLFNNDV---TTIENYREKVFEL 29 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV---~~~~~YR~~V~~~ 29 (106)
.|++|++|.|.+||. |....++.++...
T Consensus 53 ~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 53 ALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp GCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred hccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 478999999999999 4677777766544
No 143
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=82.21 E-value=0.43 Score=40.44 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=19.8
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|.++...- ...|..|++|++|+.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSIDF 155 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEEE
T ss_pred ccCCCCEEECCCCccccccc--chhHhhCCCCCEEEC
Confidence 45566666666666654311 013566777777764
No 144
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=82.16 E-value=0.95 Score=37.86 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=20.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF 39 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~ 39 (106)
+|++|++|+|.+|.++.. -...|..+++|++|+..
T Consensus 221 ~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGD---FSRAISTCTELKLLNIS 255 (768)
T ss_dssp TCCSCCEEECCSSCCCSC---HHHHTTTCSSCCEEECC
T ss_pred cCCCCCEEECcCCcCCCc---ccHHHhcCCCCCEEECC
Confidence 456666666666666532 12255667777776653
No 145
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=81.62 E-value=0.62 Score=38.25 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA 41 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v 41 (106)
++++|++|+|.+|.++..+. .+|..+|+|++|+....
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~---~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPK---ELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCT---HHHHTTCCCSEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCH---HHHccCCCCCEEECCCC
Confidence 45688888888888886543 47778899999886543
No 146
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=81.12 E-value=0.82 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=18.2
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|+|++|.++..+. .|..||+|++|+.
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~L 783 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGI 783 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEEC
T ss_pred cCCCcCEEEeCCCCCCccch----hhhcCCCCCEEEC
Confidence 45666666666666655432 2345566666554
No 147
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=79.34 E-value=1.1 Score=37.36 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=5.1
Q ss_pred CCceEeCCCCCCC
Q psy8459 5 NLKHVDLFNNDVT 17 (106)
Q Consensus 5 ~L~~L~L~gNPV~ 17 (106)
+|++|+|.+|.++
T Consensus 141 ~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 141 LLEYINADNNQLT 153 (571)
T ss_dssp TCCEEECCSSCCS
T ss_pred cccEEeCCCCccC
Confidence 3333333333333
No 148
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=78.99 E-value=1.3 Score=38.85 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=14.5
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+|.+|.++..+.. ..|..|++|++|+.
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~--~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPAS--ASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCEEECCSSCCCBCCCH--HHHTTCTTCCEEEC
T ss_pred CCccEEEeeCCcCCccCCh--hhhhcCCCCCEEEC
Confidence 3444444444444433321 13444555555543
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=76.85 E-value=0.89 Score=33.75 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=25.0
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
|++|++|+|.+|.|+..+.| +|..|++|+.|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l 257 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKL 257 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT---TTTTCTTCCEEEC
T ss_pred cCCCeEEECCCCCcceecHh---hhhCCCCCCEEEC
Confidence 67888888888888777554 5777778877765
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=75.62 E-value=0.5 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=17.6
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCcee
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyL 36 (106)
+|++|+.|.|.+|.|+..+.+ +|..+++|+.|
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~---aF~~~~~L~~l 326 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDE---LFGNGVPSKLI 326 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTT---TTCTTCCCCEE
T ss_pred CCccCCEEEeCCCccCccchh---hhcCCcchhhh
Confidence 355666666656655555332 45556666655
No 151
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=75.31 E-value=1.4 Score=36.61 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=14.0
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+|++|.|+..+ ..+++|++|+.
T Consensus 80 ~~L~~L~Ls~N~l~~ip-------~~l~~L~~L~L 107 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-------ELPASLEYLDA 107 (571)
T ss_dssp TTCSEEECCSSCCSCCC-------CCCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc-------cccCCCCEEEc
Confidence 34555555555555444 22455555544
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=74.41 E-value=2 Score=33.61 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=17.5
Q ss_pred CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+++|++|+|..|.++. ..-+......||+|++|+.
T Consensus 192 ~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp CTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEE
T ss_pred CCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEE
Confidence 3455555555444432 1223222236888888874
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=73.25 E-value=1.5 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=17.9
Q ss_pred CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
++|++|+|.+|.++..+. |..+++|++|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp~-----~~~l~~L~~L~l 160 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE-----LQNSSFLKIIDV 160 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-----CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCcc-----cCCCCCCCEEEC
Confidence 356666666666665542 556666666664
No 154
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=71.82 E-value=2.2 Score=33.68 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=7.1
Q ss_pred CCCceEeCCCCCCCCh
Q psy8459 4 TNLKHVDLFNNDVTTI 19 (106)
Q Consensus 4 ~~L~~L~L~gNPV~~~ 19 (106)
++|++|+|.+|.++..
T Consensus 337 ~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 337 PRLERLIASFNHLAEV 352 (454)
T ss_dssp TTCCEEECCSSCCSCC
T ss_pred CcCCEEECCCCccccc
Confidence 3444444444444443
No 155
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=46.63 E-value=3.2 Score=27.21 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=27.4
Q ss_pred CceEeCCCCCCCC-hhhhHHHHHHHCCCCceec
Q psy8459 6 LKHVDLFNNDVTT-IENYREKVFELLPNLKYLD 37 (106)
Q Consensus 6 L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLD 37 (106)
|+.|.+.-|+... ..+-|.||.+.+|+|++..
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~N 51 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKAN 51 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHS
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHC
Confidence 9999999999876 6888999999998887653
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=42.88 E-value=25 Score=25.56 Aligned_cols=14 Identities=21% Similarity=0.289 Sum_probs=7.7
Q ss_pred CCceEeCCCCCCCC
Q psy8459 5 NLKHVDLFNNDVTT 18 (106)
Q Consensus 5 ~L~~L~L~gNPV~~ 18 (106)
.|++|+|..|.|..
T Consensus 99 tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 99 SLRVLNVESNFLTP 112 (197)
T ss_dssp SCCEEECCSSBCCH
T ss_pred ccCeEecCCCcCCH
Confidence 45555555555554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=36.39 E-value=14 Score=27.51 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=19.1
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|+.+.|.+|.|+....| .|..|++|+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~---aF~~c~~L~~i~l 317 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPR---VFMDCVKLSSVTL 317 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTT---TTTTCTTCCEEEC
T ss_pred cccccccccccccccceehhh---hhcCCCCCCEEEc
Confidence 355666666666656554432 4555666665543
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=33.02 E-value=9.6 Score=29.75 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=19.9
Q ss_pred CCCCCceEeCCCCCCCCh--hhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTI--ENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~--~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|+.|.|.+|.+... .......|..|++|+.|..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 466777777766554310 0112235666666666654
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=32.98 E-value=17 Score=28.29 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=15.0
Q ss_pred CCCCCceEeCCCCCCCChhhh
Q psy8459 2 QLTNLKHVDLFNNDVTTIENY 22 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~Y 22 (106)
+|++|+.|.|..|.++..+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTT
T ss_pred CcccCCeeecCCCcceEechh
Confidence 577888888888776665443
No 160
>1onv_B Serine phosphatase FCP1A; transcription factor, human general transcription factor TFIIF, RAP74, RNA polymerase II CTD phosphatase; NMR {Homo sapiens}
Probab=24.64 E-value=16 Score=23.89 Aligned_cols=14 Identities=50% Similarity=0.793 Sum_probs=0.0
Q ss_pred ccccccccccchhh
Q psy8459 90 KEVRGKKRKHDEEE 103 (106)
Q Consensus 90 ~~~~~~krk~~~~~ 103 (106)
.+.||.|||+..++
T Consensus 35 rgpRGhkrk~~e~d 48 (83)
T 1onv_B 35 RGPRGHKRKLNEED 48 (83)
T ss_dssp --------------
T ss_pred cCCccccccccccc
Confidence 36899999987654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=23.83 E-value=16 Score=27.64 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=4.5
Q ss_pred CCCCceEeC
Q psy8459 3 LTNLKHVDL 11 (106)
Q Consensus 3 L~~L~~L~L 11 (106)
|++|++|.|
T Consensus 319 c~~L~~i~l 327 (394)
T 4fs7_A 319 CTSLVSIDL 327 (394)
T ss_dssp CTTCCEECC
T ss_pred CCCCCEEEe
Confidence 445555554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=23.48 E-value=21 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=16.4
Q ss_pred CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38 (106)
Q Consensus 2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg 38 (106)
+|++|++|.|-.| |+.... +.|..|++|+.+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~---~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPE---SAFSNCTALNNIEY 364 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCG---GGGTTCTTCCEEEE
T ss_pred CCCCCCEEEECcc-cCEEhH---hHhhCCCCCCEEEE
Confidence 3455666655333 444322 24556666665543
Done!