RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8459
(106 letters)
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 60.9 bits (148), Expect = 3e-13
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDD 52
K+L LK +DLFN +VT + +YRE VF+LLP L YLDG+D ++ EAPDS+ +
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAE 168
Score = 28.2 bits (63), Expect = 0.36
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+ + L N + ++ N LP LK L+
Sbjct: 46 AEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLE 77
Score = 27.0 bits (60), Expect = 1.0
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L LK ++L N + + + E LPNL +L+
Sbjct: 69 KLPKLKKLELSENRIFGGLDM---LAEKLPNLTHLN 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 58.1 bits (141), Expect = 3e-12
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40
K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149
Score = 30.0 bits (68), Expect = 0.084
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L+ + N +T+I N L LK L+
Sbjct: 39 DEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLE 70
Score = 26.9 bits (60), Expect = 0.89
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L LK ++L +N V+ E + E PNL +L+
Sbjct: 62 KLNKLKKLELSDNRVSGGL---EVLAEKCPNLTHLN 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 52.0 bits (125), Expect = 8e-10
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNE 45
L +L ++ + N VT ++YR V +P ++ LD K E
Sbjct: 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154
Score = 28.9 bits (65), Expect = 0.23
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +D +N++ ++ F LL LK L
Sbjct: 39 ATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLL 70
Score = 28.1 bits (63), Expect = 0.38
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK + + NN + I E + + LP+L L
Sbjct: 63 LRRLKTLLVNNNRICRIG---EGLDQALPDLTELI 94
Score = 25.8 bits (57), Expect = 3.0
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +DL + IEN + L +D
Sbjct: 17 NAVRDRELDLRGYKIPVIEN----LGATLDQFDAID 48
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 44.7 bits (105), Expect = 8e-07
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L ++L N + E +E++ E+LP++ +
Sbjct: 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
Score = 30.5 bits (68), Expect = 0.070
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + +N + ++ LP L+ L
Sbjct: 484 ALRCLEVLQASDNALENVDG-----VANLPRLQELL 514
Score = 29.7 bits (66), Expect = 0.13
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
QL + H+DL +N + + L L+ L
Sbjct: 461 QLLLVTHLDLSHNRLRAL----PPALAALRCLEVLQ 492
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 43.1 bits (101), Expect = 3e-06
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 5 NLKHVDLFNNDVTTI----ENYREKVFELLPNLKYLDG 38
L+ + L N + Y + E P L LDG
Sbjct: 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 41.3 bits (97), Expect = 1e-05
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
NL+ + L +N + TIE E F L +L++LD
Sbjct: 75 CVNLQALVLTSNGINTIE---EDSFSSLGSLEHLD 106
Score = 40.1 bits (94), Expect = 3e-05
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+H+DL N ++ + + F+ L +L +L+
Sbjct: 99 LGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLN 130
Score = 39.3 bits (92), Expect = 6e-05
Identities = 5/35 (14%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ L ++ N + ++ + +F+ L +L+ +
Sbjct: 276 ISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIW 307
Score = 38.2 bits (89), Expect = 2e-04
Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N+ H+ L + E ++ +++ L+
Sbjct: 197 IQNVSHLILHMKQHILLL---EIFVDVTSSVECLE 228
Score = 36.3 bits (84), Expect = 6e-04
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L++L ++L N T+ +F L L+ L
Sbjct: 123 LSSLTFLNLLGNPYKTLGETS--LFSHLTKLQIL 154
Score = 36.3 bits (84), Expect = 7e-04
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ +++ +D+ + E K + + N+ +L
Sbjct: 173 LTFLEELEIDASDLQSYE---PKSLKSIQNVSHLI 204
Score = 26.2 bits (58), Expect = 2.0
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 3 LTNLKHVDLFNN 14
LT+L+ + L N
Sbjct: 300 LTSLQKIWLHTN 311
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
c.10.2.7
Length = 347
Score = 40.9 bits (95), Expect = 2e-05
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L+++ + + + + F P L L+
Sbjct: 53 RGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLN 86
Score = 28.6 bits (63), Expect = 0.33
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLP 31
L ++L N + ++ K + L
Sbjct: 79 TPRLSRLNLSFNALESLS---WKTVQGLS 104
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 40.0 bits (94), Expect = 4e-05
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L NL +DL + I F+ L L
Sbjct: 54 SRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLV 87
Score = 38.5 bits (90), Expect = 1e-04
Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L++L+ ++L N+ +++ + F+ P L+ LD
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLD 406
Score = 37.7 bits (88), Expect = 2e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K+ L+ +DL + + + F+ L LK L+
Sbjct: 397 KECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLN 431
Score = 36.9 bits (86), Expect = 4e-04
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LKH+ +++I+ L+ L
Sbjct: 104 PKALKHLFFIQTGISSIDF---IPLHNQKTLESLY 135
Score = 36.1 bits (84), Expect = 8e-04
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK ++L ++ + +F+ LP L++L+
Sbjct: 424 LHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLN 455
Score = 35.8 bits (83), Expect = 0.001
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L NL+ +DL ++D+ T + L +L+ L+
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLN 382
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L+ + L D+++I+ + F L + ++D
Sbjct: 473 QTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVD 506
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + L N + + E LK+L
Sbjct: 80 QHRLDTLVLTANPLIFMA---ETALSGPKALKHLF 111
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + L +N +++I+ LK LD
Sbjct: 126 HNQKTLESLYLGSNHISSIK---LPKGFPTEKLKVLD 159
Score = 33.8 bits (78), Expect = 0.005
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L+ +DL ++ + + L LK L
Sbjct: 277 FSGLQELDLTATHLSELPSG----LVGLSTLKKLV 307
Score = 33.5 bits (77), Expect = 0.006
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+H++L N + + L L+ L
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Score = 32.7 bits (75), Expect = 0.012
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ LK + L N + P+L +L
Sbjct: 300 LSTLKKLVLSANKFENLCQI---SASNFPSLTHLS 331
Score = 32.7 bits (75), Expect = 0.012
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + ++ N + TI+N F L NL +LD
Sbjct: 32 PNSTECLEFSFNVLPTIQN---TTFSRLINLTFLD 63
Score = 32.3 bits (74), Expect = 0.015
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 1 KQLTNLKHVDL-FNNDVTTIENYREKVFELLPNLKYLD 37
+L H+ + N + E L NL+ LD
Sbjct: 322 SNFPSLTHLSIKGNTKRLELG---TGCLENLENLRELD 356
Score = 32.3 bits (74), Expect = 0.016
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNE 45
LK +D NN + + ++ L L + N+
Sbjct: 151 PTEKLKVLDFQNNAIHYLS---KEDMSSLQQATNLS-LNLNGND 190
Score = 31.5 bits (72), Expect = 0.029
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+++ ++L + I F L+ LD
Sbjct: 252 CEMSVESINLQKHYFFNIS---SNTFHCFSGLQELD 284
Score = 31.1 bits (71), Expect = 0.049
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + +++L +N ++ I + +L + ++
Sbjct: 521 SHLKGI-YLNLASNHISIIL---PSLLPILSQQRTIN 553
Score = 28.8 bits (65), Expect = 0.29
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + HVDL +N +T+ + L + YL+
Sbjct: 497 TSLKMMNHVDLSHNRLTSSS---IEALSHLKGI-YLN 529
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 38.6 bits (90), Expect = 4e-05
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L N++T + + + LP L+
Sbjct: 31 VDTTELVLTGNNLTALP---PGLLDALPALRTAH 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 39.7 bits (93), Expect = 5e-05
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L +L+ + + + + IE F+ L +L ++
Sbjct: 228 QGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEIN 261
Score = 39.3 bits (92), Expect = 5e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++LF+N +TTI F L LK L
Sbjct: 111 LANLNTLELFDNRLTTIP---NGAFVYLSKLKELW 142
Score = 39.0 bits (91), Expect = 8e-05
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L ++L +N++T + +F L +L+ +
Sbjct: 254 LQSLVEINLAHNNLTLLP---HDLFTPLHHLERIH 285
Score = 39.0 bits (91), Expect = 8e-05
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ + L N + TIE F L NL L+
Sbjct: 87 LRHLEILQLSRNHIRTIE---IGAFNGLANLNTLE 118
Score = 37.4 bits (87), Expect = 2e-04
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ LK + L NN + +I +Y F +P+L+ LD
Sbjct: 135 LSKLKELWLRNNPIESIPSY---AFNRIPSLRRLD 166
Score = 35.1 bits (81), Expect = 0.002
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L +DL N ++ I F+ L +L+ L
Sbjct: 206 LIKLDELDLSGNHLSAIR---PGSFQGLMHLQKLW 237
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR
hybrid, MD-2, LPS, glycoprotein response, inflammatory
response, innate immunity; HET: NAG FUL BMA; 1.70A
{Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 39.6 bits (93), Expect = 5e-05
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ +DL ++ TIE + ++ L +L L
Sbjct: 51 FPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82
Score = 37.6 bits (88), Expect = 2e-04
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK +++ +N + + + + F L NL++LD
Sbjct: 123 LKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155
Score = 37.6 bits (88), Expect = 2e-04
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + ++ ++EN+ L LK L+
Sbjct: 98 GLSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130
Score = 36.1 bits (84), Expect = 6e-04
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL+H+DL +N + +I +L + L+
Sbjct: 147 NLTNLEHLDLSSNKIQSIY---CTDLRVLHQMPLLN 179
Score = 36.1 bits (84), Expect = 7e-04
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L + L N + ++ F L +L+ L
Sbjct: 74 SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLV 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 39.4 bits (92), Expect = 5e-05
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L+NN + ++ FE + L+ L
Sbjct: 111 LQALEVLLLYNNHIVVVD---RNAFEDMAQLQKLY 142
Score = 39.1 bits (91), Expect = 8e-05
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL + L +N + I + F +PNL+YLD
Sbjct: 63 LTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLD 94
Score = 36.7 bits (85), Expect = 5e-04
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+++DL +N + T++ E +F L L+ L
Sbjct: 85 VPVPNLRYLDLSSNHLHTLD---EFLFSDLQALEVLL 118
Score = 35.2 bits (81), Expect = 0.002
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN 44
+ L+ + L N ++ ++ + L L D +N
Sbjct: 135 MAQLQKLYLSQNQISRFP---VELIKDGNKLPKLMLLDLSSN 173
Score = 28.7 bits (64), Expect = 0.31
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLK----YLDG 38
L L +DL +N + + + LP YL
Sbjct: 162 LPKLMLLDLSSNKLKKL---PLTDLQKLPAWVKNGLYLHN 198
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo
sapiens}
Length = 520
Score = 39.5 bits (92), Expect = 6e-05
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ + + +N + ++ VF+ L+YLD
Sbjct: 44 LSKLRILIISHNRIQYLD---ISVFKFNQELEYLD 75
Score = 36.8 bits (85), Expect = 6e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
NLKH+DL N + K F + LK+L
Sbjct: 89 TVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLG 121
Score = 36.4 bits (84), Expect = 7e-04
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q+ +L+ +D+ N V+ E + +L L+
Sbjct: 371 TQMKSLQQLDISQNSVSYDEK--KGDCSWTKSLLSLN 405
Score = 35.2 bits (81), Expect = 0.002
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ + L N + + ++ + +L+ LD
Sbjct: 346 HLTELETLILQMNQLKELSKI-AEMTTQMKSLQQLD 380
Score = 34.8 bits (80), Expect = 0.002
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+++ H+D NN +T + L L+ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLI 354
Score = 34.5 bits (79), Expect = 0.003
Identities = 6/36 (16%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L L+ +++ +N + ++ + +F+ L +L+ +
Sbjct: 442 KLEALQELNVASNQLKSVP---DGIFDRLTSLQKIW 474
Score = 32.9 bits (75), Expect = 0.013
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L+++DL +N + I NLK+LD
Sbjct: 66 KFNQELEYLDLSHNKLVKIS------CHPTVNLKHLD 96
Score = 28.7 bits (64), Expect = 0.34
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSED 51
++ LK + L + + +L + ED
Sbjct: 113 NMSQLKFLGLSTTHLEKS------SVLPIAHLNISKVLLVLGETYGEKED 156
Score = 25.6 bits (56), Expect = 4.4
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+LK + + + ++E+ N+ +
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ;
1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A*
3a7b_A* 2z7x_A*
Length = 549
Score = 39.3 bits (92), Expect = 6e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+ + L ++ + TIE F L +L++LD
Sbjct: 47 RACANLQVLILKSSRINTIE---GDAFYSLGSLEHLD 80
Score = 39.3 bits (92), Expect = 6e-05
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + N + ++ + +F+ L +L+ +
Sbjct: 472 FPVLLVMKISRNQLKSVP---DGIFDRLTSLQKIW 503
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++LK+++L N T+ +F L NL+ L
Sbjct: 96 PLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLR 129
Score = 38.2 bits (89), Expect = 2e-04
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L +L+ +DL N + P+L+ L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Score = 37.8 bits (88), Expect = 2e-04
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL +D+ N + + + +++L+
Sbjct: 384 LTLKNLTSLDISRNTFHPMPD----SCQWPEKMRFLN 416
Score = 37.4 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+H+DL +N ++++ F L +LKYL+
Sbjct: 71 YSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLKYLN 104
Score = 37.0 bits (86), Expect = 4e-04
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +K + + N+ V + + L +L++LD
Sbjct: 308 LLEKVKRITVENSKVFLVPC---SFSQHLKSLEFLD 340
Score = 36.6 bits (85), Expect = 5e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ + L N + +++ E + L NL LD
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGE-ILLTLKNLTSLD 393
Score = 35.5 bits (82), Expect = 0.001
Identities = 4/37 (10%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L +++ + + + + + ++ +L
Sbjct: 145 AGLTSLNELEIKALSLRNYQ---SQSLKSIRDIHHLT 178
Score = 34.3 bits (79), Expect = 0.004
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + + N + T+ + L P L +
Sbjct: 450 LPRLQELYISRNKLKTLPDA-----SLFPVLLVMK 479
Score = 33.9 bits (78), Expect = 0.005
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL+ + + N + T R F L +L L+
Sbjct: 121 NLTNLQTLRIGNVE--TFSEIRRIDFAGLTSLNELE 154
Score = 33.5 bits (77), Expect = 0.007
Identities = 4/36 (11%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ ++ + + + + V+ LL +K +
Sbjct: 284 ETVTIRRLHIPQFYLFYDLS---TVYSLLEKVKRIT 316
Score = 32.8 bits (75), Expect = 0.011
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+K +DL N +T I + NL+ L
Sbjct: 25 TAAMKSLDLSFNKITYIGH---GDLRACANLQVLI 56
Score = 30.1 bits (68), Expect = 0.12
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ +D+ NN++ + + LP L+ L
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF-------LPRLQELY 457
Score = 28.5 bits (64), Expect = 0.33
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ ++L + + ++ + L+ LD
Sbjct: 409 PEKMRFLNLSSTGIRVVKT------CIPQTLEVLD 437
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 39.3 bits (92), Expect = 6e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++LK + + N+ V+ IE F+ L +L L+
Sbjct: 239 HGLSSLKKLWVMNSQVSLIE---RNAFDGLASLVELN 272
Score = 39.0 bits (91), Expect = 8e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L ++LF+N +T I FE L L+ L
Sbjct: 122 LASLNTLELFDNWLTVIP---SGAFEYLSKLRELW 153
Score = 39.0 bits (91), Expect = 9e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ + L N + IE F L +L L+
Sbjct: 98 LHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLE 129
Score = 38.6 bits (90), Expect = 1e-04
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L ++L +N+++++ +F L L L
Sbjct: 265 LASLVELNLAHNNLSSLP---HDLFTPLRYLVELH 296
Score = 37.8 bits (88), Expect = 2e-04
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ + L NN + +I +Y F +P+L LD
Sbjct: 146 LSKLRELWLRNNPIESIPSY---AFNRVPSLMRLD 177
Score = 35.1 bits (81), Expect = 0.002
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NLK+++L ++ + N L L+ L+
Sbjct: 195 LFNLKYLNLGMCNIKDMPN-----LTPLVGLEELE 224
Score = 35.1 bits (81), Expect = 0.002
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ +++ N I F L +LK L
Sbjct: 217 LVGLEELEMSGNHFPEIR---PGSFHGLSSLKKLW 248
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 39.2 bits (92), Expect = 7e-05
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L +L + L NN ++ I EK F L L+ L
Sbjct: 75 KGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY 108
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L + L +N + IEN LP L+ L
Sbjct: 214 LRYSKLYRLGLGHNQIRMIEN---GSLSFLPTLRELH 247
Score = 32.3 bits (74), Expect = 0.017
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L NN ++ + L L+ +
Sbjct: 240 LPTLRELHLDNNKLSRV----PAGLPDLKLLQVVY 270
Score = 31.5 bits (72), Expect = 0.031
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++L + + +N + + VF L N+ ++
Sbjct: 122 PSSLVELRIHDNRIRKVPKG---VFSGLRNMNCIE 153
Score = 30.8 bits (70), Expect = 0.065
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + + N + I L +L L
Sbjct: 101 LRKLQKLYISKNHLVEIPP------NLPSSLVELR 129
Score = 30.4 bits (69), Expect = 0.071
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + L +N + IE L L
Sbjct: 192 PETLNELHLDHNKIQAIELE---DLLRYSKLYRLG 223
Score = 30.4 bits (69), Expect = 0.088
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 3 LTNLKHVDLFNNDVTTIENY---REKVFELLPNLKYLD 37
L L+ V L N++T + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Score = 26.1 bits (58), Expect = 2.3
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L N+ +++ N + + F+ L L YL
Sbjct: 144 SGLRNMNCIEMGGNPLENS-GFEPGAFDGL-KLNYLR 178
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo
sapiens}
Length = 220
Score = 38.9 bits (91), Expect = 7e-05
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K+L L+ ++ NN +T IE E FE + +
Sbjct: 54 KKLPQLRKINFSNNKITDIE---EGAFEGASGVNEIL 87
Score = 34.6 bits (80), Expect = 0.002
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + + L +N + +++ K+F+ L +LK L
Sbjct: 79 GASGVNEILLTSNRLENVQH---KMFKGLESLKTLM 111
Score = 33.5 bits (77), Expect = 0.006
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L +LK + L +N +T + N F L +++ L
Sbjct: 102 KGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLS 135
Score = 30.4 bits (69), Expect = 0.064
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L++++ + L++N +TT+ F+ L +L L
Sbjct: 128 LSSVRLLSLYDNQITTVA---PGAFDTLHSLSTL 158
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG
NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 38.8 bits (91), Expect = 9e-05
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L +D+ N ++ +E ++ + LP LK L+
Sbjct: 46 TRYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLN 79
Score = 36.5 bits (85), Expect = 7e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL +DL +N +++ + L NL+ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKL---GTQVQLENLQELL 151
Score = 36.1 bits (84), Expect = 8e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L N+ + L N + F L+P+L+ L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTR---NSFALVPSLQRLM 460
Score = 36.1 bits (84), Expect = 8e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
TNL + L +N + I+N F NL LD
Sbjct: 96 CTNLTELHLMSNSIQKIKN---NPFVKQKNLITLD 127
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L NL +DL NN++ I + + E L L+ LD
Sbjct: 477 QPLRNLTILDLSNNNIANIND---DMLEGLEKLEILD 510
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK ++L +N+++ + +K F NL L
Sbjct: 72 LPMLKVLNLQHNELSQLS---DKTFAFCTNLTELH 103
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L+H+++ +ND+ I+ +F L NLKYL
Sbjct: 326 QWLKCLEHLNMEDNDIPGIK---SNMFTGLINLKYLS 359
Score = 34.2 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L ++L N ++ IE+ F L +L+ LD
Sbjct: 380 HSPLHILNLTKNKISKIESD---AFSWLGHLEVLD 411
Score = 34.2 bits (79), Expect = 0.003
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ TNL +DL N++ + N F LP L+Y
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN---DSFAWLPQLEYFF 278
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L++ L N++ + + L N++YL+
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFS---HSLHGLFNVRYLN 302
Score = 33.8 bits (78), Expect = 0.005
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L LK +DL N++ T+ VF +LK L+
Sbjct: 557 KDLFELKIIDLGLNNLNTLP---ASVFNNQVSLKSLN 590
Score = 33.8 bits (78), Expect = 0.006
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +L+ + L + +++ F+ L NL LD
Sbjct: 452 LVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILD 486
Score = 33.4 bits (77), Expect = 0.008
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
TN+ ++L +N + + F L LD
Sbjct: 24 PTNITVLNLTHNQLRRLPAA---NFTRYSQLTSLD 55
Score = 32.7 bits (75), Expect = 0.011
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFE-LLPNLKYLD 37
+LK ++L N +T++E +KVF NL LD
Sbjct: 582 NQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELD 615
Score = 32.7 bits (75), Expect = 0.014
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPN--LKYLD 37
QL NL+ + L NN + ++ + ++ N LK L+
Sbjct: 143 QLENLQELLLSNNKIQALK---SEELDIFANSSLKKLE 177
Score = 32.3 bits (74), Expect = 0.017
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ +DL N++ +E + L N+ +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQE--WRGLENIFEIY 436
Score = 32.3 bits (74), Expect = 0.017
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L++L ++L +N I +VF+ L LK +D
Sbjct: 533 KGLSHLHILNLESNGFDEIPV---EVFKDLFELKIID 566
Score = 31.9 bits (73), Expect = 0.023
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++LK ++L +N + F + L L
Sbjct: 169 ANSSLKKLELSSNQIKEFS---PGCFHAIGRLFGLF 201
Score = 31.5 bits (72), Expect = 0.037
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREK-----VFELLPNLKYLD 37
+ L L+ +DL +N++ + + + L +L L+
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Score = 29.6 bits (67), Expect = 0.18
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELL--PNLKYLD 37
T+++++ L N+ ++T N F L NL LD
Sbjct: 220 ANTSIRNLSLSNSQLSTTSN---TTFLGLKWTNLTMLD 254
Score = 28.8 bits (65), Expect = 0.26
Identities = 7/41 (17%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 3 LTNLKHVDLFNN------DVTTIENYREKVFELLPNLKYLD 37
L N+++++L + + ++ + F+ L L++L+
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Score = 28.0 bits (63), Expect = 0.55
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPN--LKYLD 37
L NLK++ L N+ + E F L + L L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNE-TFVSLAHSPLHILN 387
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2,
LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 38.9 bits (91), Expect = 9e-05
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ +DL ++ TIE + ++ L +L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82
Score = 38.2 bits (89), Expect = 2e-04
Identities = 6/37 (16%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ +++ +N + ++ + +F+ L +L+ +
Sbjct: 491 NSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIW 524
Score = 38.2 bits (89), Expect = 2e-04
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + ++ ++EN+ L LK L+
Sbjct: 99 LSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130
Score = 37.0 bits (86), Expect = 4e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++D+ + N +F L +L+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLK 451
Score = 37.0 bits (86), Expect = 4e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+H+D ++++ + VF L NL YLD
Sbjct: 394 GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLD 427
Score = 37.0 bits (86), Expect = 5e-04
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK +++ +N + + + + F L NL++LD
Sbjct: 121 GHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155
Score = 36.6 bits (85), Expect = 5e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+LK++DL N V T+ + F L L++LD
Sbjct: 370 FGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD 402
Score = 36.2 bits (84), Expect = 7e-04
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L + L N + ++ F L +L+ L
Sbjct: 74 SLSHLSTLILTGNPIQSLA---LGAFSGLSSLQKLV 106
Score = 35.5 bits (82), Expect = 0.001
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L NL +DL + + F L +L+ L+
Sbjct: 467 TELRNLTFLDLSQCQLEQLSP---TAFNSLSSLQVLN 500
Score = 33.1 bits (76), Expect = 0.008
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ +DL N ++ + +LKYLD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLD 379
Score = 32.4 bits (74), Expect = 0.016
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + + N EN+ +F L NL +LD
Sbjct: 442 NGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLD 476
Score = 32.4 bits (74), Expect = 0.018
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ K++DL N + + + F P L+ LD
Sbjct: 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLD 58
Score = 32.0 bits (73), Expect = 0.023
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LTNL+H+DL +N + +I +L + L
Sbjct: 147 NLTNLEHLDLSSNKIQSIY---CTDLRVLHQMPLL 178
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 38.6 bits (90), Expect = 1e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LT+L+ + L +N++ I+ F + LD
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLD 160
Score = 37.8 bits (88), Expect = 2e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L+ +DL N + + + + F LPNLK L
Sbjct: 344 ENLDKLEVLDLSYNHIRALGD---QSFLGLPNLKELA 377
Score = 37.4 bits (87), Expect = 3e-04
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L + L N +E F L NL+ L
Sbjct: 77 GLSSLIILKLDYNQFLQLE---TGAFNGLANLEVLT 109
Score = 37.0 bits (86), Expect = 4e-04
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L ++L N + +I+ ++FE L L+ LD
Sbjct: 321 GLTHLLKLNLSQNFLGSID---SRMFENLDKLEVLD 353
Score = 36.3 bits (84), Expect = 7e-04
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+L+ + L N++ I+ + F L +L L+
Sbjct: 296 SHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLN 329
Score = 35.5 bits (82), Expect = 0.001
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NLK + L N + ++ + +F+ L +L+ +
Sbjct: 370 LPNLKELALDTNQLKSVP---DGIFDRLTSLQKIW 401
Score = 34.0 bits (78), Expect = 0.005
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ + + + R F L +L L
Sbjct: 53 LQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILK 85
Score = 34.0 bits (78), Expect = 0.005
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + +K DL + + + VF +L+ L
Sbjct: 273 EASGVKTCDLSKSKIFALLK---SVFSHFTDLEQLT 305
Score = 32.8 bits (75), Expect = 0.013
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ + L ++ F+ L +L+ L
Sbjct: 102 LANLEVLTLTQCNLDGAVL-SGNFFKPLTSLEMLV 135
Score = 27.8 bits (62), Expect = 0.73
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLP--NLKYLD 37
+ +DL N V +I E+ + L
Sbjct: 153 MRRFHVLDLTFNKVKSIC---EEDLLNFQGKHFTLLR 186
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 38.4 bits (90), Expect = 1e-04
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L + L N V + F L L L
Sbjct: 176 LHSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLY 207
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L + LF N+++ + + L L+YL
Sbjct: 200 LGRLMTLYLFANNLSALP---TEALAPLRALQYLR 231
Score = 37.3 bits (87), Expect = 3e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
NL + L +N + I+ F L L+ LD
Sbjct: 55 CRNLTILWLHSNVLARID---AAAFTGLALLEQLD 86
Score = 37.3 bits (87), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL H+ L N ++++ E+ F L +L L
Sbjct: 152 LGNLTHLFLHGNRISSVP---ERAFRGLHSLDRLL 183
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L + L + + +F L L+YL
Sbjct: 104 LGRLHTLHLDRCGLQELG---PGLFRGLAALQYLY 135
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+++ L +N + + + F L NL +L
Sbjct: 128 LAALQYLYLQDNALQALP---DDTFRDLGNLTHLF 159
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 38.1 bits (89), Expect = 1e-04
Identities = 7/35 (20%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ +++ +N+ +++ + ++ L +L+ LD
Sbjct: 198 LSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLD 229
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++D+ + N +F L +L+ L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLK 156
Score = 37.3 bits (87), Expect = 3e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L + L +N ++ + +LKYLD
Sbjct: 51 LTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLD 84
Score = 36.9 bits (86), Expect = 4e-04
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+LK++DL N V T+ + F L L++LD
Sbjct: 77 TTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD 107
Score = 35.8 bits (83), Expect = 0.001
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+H+D ++++ + + VF L NL YLD
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLD 132
Score = 35.4 bits (82), Expect = 0.001
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL +DL + + F L +L+ L+
Sbjct: 174 LRNLTFLDLSQCQLEQLS---PTAFNSLSSLQVLN 205
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ ++L +N + ++ + VF+ L L L
Sbjct: 28 SSATRLELESNKLQSLPH---GVFDKLTQLTKLS 58
Score = 34.6 bits (80), Expect = 0.003
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFE-LLPNLKYLD 37
L +L+ +D N + T + ++ + +L +L+
Sbjct: 222 LNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLN 254
Score = 33.8 bits (78), Expect = 0.005
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + + N + EN+ +F L NL +LD
Sbjct: 149 LSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLD 181
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 38.1 bits (89), Expect = 1e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L NL + L NN ++ I F L L+ L
Sbjct: 73 KNLKNLHTLILINNKISKIS---PGAFAPLVKLERLY 106
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L NL + L N ++ ++N P+L+ L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDN---GSLANTPHLRELH 246
Score = 34.2 bits (79), Expect = 0.003
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 3 LTNLKHVDLFNNDVTTIENY---REKVFELLPNLKYLD 37
++ V L NN+++ I + + +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Score = 32.7 bits (75), Expect = 0.012
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + + N++T + VF L + ++
Sbjct: 120 PKTLQELRVHENEITKVRKS---VFNGLNQMIVVE 151
Score = 32.3 bits (74), Expect = 0.019
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ + L NN + + ++ +
Sbjct: 239 TPHLRELHLNNNKLVKVPG----GLADHKYIQVVY 269
Score = 31.5 bits (72), Expect = 0.033
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L N + + ++ L+ L
Sbjct: 99 LVKLERLYLSKNQLKELPE------KMPKTLQELR 127
Score = 31.1 bits (71), Expect = 0.040
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 3 LTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLD 37
L + V+L N + + IE F+ + L Y+
Sbjct: 144 LNQMIVVELGTNPLKSSGIE---NGAFQGMKKLSYIR 177
Score = 30.7 bits (70), Expect = 0.053
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ V LF+N V E + F + +
Sbjct: 292 KASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQ 325
Score = 30.0 bits (68), Expect = 0.11
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + L N +T ++ + L NL L
Sbjct: 191 PPSLTELHLDGNKITKVD---AASLKGLNNLAKLG 222
Score = 27.7 bits (62), Expect = 0.68
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L ++ + + ++TTI L P+L L
Sbjct: 170 MKKLSYIRIADTNITTIPQ------GLPPSLTELH 198
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related
lipid recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5
DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 38.1 bits (89), Expect = 1e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L+ +DL ++ TIE +K + L +L L
Sbjct: 53 SNFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLI 86
Score = 37.7 bits (88), Expect = 3e-04
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
QL +L +D N + T + + +L + +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGI---LQHFPKSLAFFN 551
Score = 37.3 bits (87), Expect = 3e-04
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L+++ + ++E++ L LK L+
Sbjct: 103 LTSLENLVAVETKLASLESF---PIGQLITLKKLN 134
Score = 36.9 bits (86), Expect = 4e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
QL LK +++ +N + + + F L NL ++D
Sbjct: 125 GQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVD 159
Score = 36.5 bits (85), Expect = 6e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+H+D ++ + + F L L YLD
Sbjct: 396 MGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLLYLD 430
Score = 36.2 bits (84), Expect = 9e-04
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L ++D+ + + +F L +L L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDG---IFLGLTSLNTLK 454
Score = 35.4 bits (82), Expect = 0.001
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L ++ L N + + F L +L+ L
Sbjct: 79 LHHLSNLILTGNPIQSFS---PGSFSGLTSLENLV 110
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
TNL +DL + I VF+ L L+ L+
Sbjct: 470 ANTTNLTFLDLSKCQLEQIS---WGVFDTLHRLQLLN 503
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ +++ +N++ +++ + L +L LD
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDS---SHYNQLYSLSTLD 527
Score = 34.6 bits (80), Expect = 0.003
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+H+DL N + F L L++LD
Sbjct: 375 TNSLRHLDLSFNGAIIMSA----NFMGLEELQHLD 405
Score = 33.1 bits (76), Expect = 0.009
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK + L N + LP+L YLD
Sbjct: 326 DLPFLKSLTLTMNKGSISFK-----KVALPSLSYLD 356
Score = 31.2 bits (71), Expect = 0.039
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ K++DL N + + + F L++LD
Sbjct: 32 SSTKNIDLSFNPLKIL---KSYSFSNFSELQWLD 62
Score = 31.2 bits (71), Expect = 0.047
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L + + N VF NL +LD
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLD 479
Score = 30.8 bits (70), Expect = 0.067
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELL--PNLKYLD 37
L +L ++DL N ++ + L +L++LD
Sbjct: 349 LPSLSYLDLSRNALSFSGCC---SYSDLGTNSLRHLD 382
Score = 30.0 bits (68), Expect = 0.10
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LTNL HVDL N + TI + L +
Sbjct: 151 NLTNLVHVDLSYNYIQTIT---VNDLQFLRENPQV 182
Score = 28.8 bits (65), Expect = 0.30
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKV----------------FELLPNLKYLD 37
L N+ + L + +E+ + LP LK L
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L +LK ++L N + I + + F L NL+ L+
Sbjct: 287 ETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLN 320
Score = 37.9 bits (88), Expect = 2e-04
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ ++L N + + + F LP + Y+D
Sbjct: 313 LDNLQVLNLSYNLLGELYSS---NFYGLPKVAYID 344
Score = 37.1 bits (86), Expect = 4e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L +DL N + ++ F L +LK +D
Sbjct: 120 RNLKALTRLDLSKNQIRSLY--LHPSFGKLNSLKSID 154
Score = 36.7 bits (85), Expect = 5e-04
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ +DL ++ + + F+ L +L L
Sbjct: 72 LPNLRILDLGSSKIYFLH---PDAFQGLFHLFELR 103
Score = 36.3 bits (84), Expect = 6e-04
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + ++DL N + I+ ++ F+ L L+ LD
Sbjct: 337 LPKVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLD 368
Score = 35.2 bits (81), Expect = 0.002
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L++L+ + L +N + ++ VF L L+ L
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPP---GVFSHLTALRGLS 510
Score = 34.4 bits (79), Expect = 0.003
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++++H+DL + V ++ + VFE L +LK L+
Sbjct: 265 RSSVRHLDLSHGFVFSLNSR---VFETLKDLKVLN 296
Score = 34.0 bits (78), Expect = 0.004
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L + + L N + T+ F L L+ L+
Sbjct: 21 QVLNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLE 54
Score = 32.5 bits (74), Expect = 0.017
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L + L+ ++ ++ F L L LD
Sbjct: 96 LFHLFELRLYFCGLSDAV-LKDGYFRNLKALTRLD 129
Score = 31.7 bits (72), Expect = 0.028
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 3 LTNLKHVDLFNN--DVTTIENYREKVFELLPNLKYLD 37
+L+ + L N + VFE L +L+ L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Score = 31.7 bits (72), Expect = 0.033
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 1 KQLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
L L+ ++L + TI+ ++ F LPNL+ LD
Sbjct: 45 PFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILD 79
Score = 29.4 bits (66), Expect = 0.20
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ + L +N +T + + +L NL+ LD
Sbjct: 501 SHLTALRGLSLNSNRLTVLSH-----NDLPANLEILD 532
Score = 28.6 bits (64), Expect = 0.36
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L L+ +DL +N +TTI +P++ +
Sbjct: 359 KFLEKLQTLDLRDNALTTIHF--------IPSIPDIF 387
Score = 27.5 bits (61), Expect = 0.97
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELL--PNLKYLD 37
+L +LK +D +N + + E E L L +
Sbjct: 146 KLNSLKSIDFSSNQIFLVC---EHELEPLQGKTLSFFS 180
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 38.2 bits (89), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ ++L N V+ +E F L NL+ L
Sbjct: 55 FPHLEELELNENIVSAVE---PGAFNNLFNLRTLG 86
Score = 37.4 bits (87), Expect = 3e-04
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L L+ ++L N ++TIE + L L+ +
Sbjct: 245 RHLVYLRFLNLSYNPISTIEG---SMLHELLRLQEIQ 278
Score = 37.4 bits (87), Expect = 3e-04
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ +++ N +TT+E E VF + NL+ L
Sbjct: 295 LNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLI 326
Score = 36.2 bits (84), Expect = 8e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NLK +++ +ND+ I + F L +L+ L
Sbjct: 127 LYNLKSLEVGDNDLVYIS---HRAFSGLNSLEQLT 158
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ + L +N + I VF L NL LD
Sbjct: 79 LFNLRTLGLRSNRLKLIP---LGVFTGLSNLTKLD 110
Score = 35.1 bits (81), Expect = 0.002
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+NL +D+ N + + + +F+ L NLK L+
Sbjct: 103 LSNLTKLDISENKIVILLD---YMFQDLYNLKSLE 134
Score = 35.1 bits (81), Expect = 0.002
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
NL + + + ++T + L L++L+
Sbjct: 222 YGLNLTSLSITHCNLTAVP---YLAVRHLVYLRFLN 254
Score = 34.7 bits (80), Expect = 0.002
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L+ + L ++T+I L L L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLR 182
Score = 34.7 bits (80), Expect = 0.002
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L L+ + L + +E F L L+ L+
Sbjct: 269 HELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLN 302
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 37.9 bits (88), Expect = 2e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +L+H+DL ND + K F L L +L
Sbjct: 120 MASLRHLDLSFNDFDVLP--VCKEFGNLTKLTFLG 152
Score = 37.9 bits (88), Expect = 2e-04
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ + L +N + +++ VF +L+YLD
Sbjct: 75 LSELRVLRLSHNRIRSLD---FHVFLFNQDLEYLD 106
Score = 34.1 bits (78), Expect = 0.004
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+++D+ +N + I + +L++LD
Sbjct: 97 LFNQDLEYLDVSHNRLQNIS------CCPMASLRHLD 127
Score = 34.1 bits (78), Expect = 0.005
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ ++ N T + L L+ L
Sbjct: 351 SPSSFTFLNFTQNVFTDSV---FQGCSTLKRLQTLI 383
Score = 32.5 bits (74), Expect = 0.014
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN 44
L L+ +++ +N + ++ + VF+ L +L+Y+ +N
Sbjct: 472 LQALQELNVASNQLKSVP---DGVFDRLTSLQYI---WLHDN 507
Score = 31.8 bits (72), Expect = 0.027
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K + L N ++ + L L+ L
Sbjct: 52 PRTKALSLSQNSISELR---MPDISFLSELRVLR 82
Score = 25.6 bits (56), Expect = 4.3
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNE 45
LT L + L ++ L L L + K E
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 36.9 bits (86), Expect = 3e-04
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L +L ++L N +T IE FE +++ L
Sbjct: 51 GRLPHLVKLELKRNQLTGIE---PNAFEGASHIQELQ 84
Score = 31.5 bits (72), Expect = 0.028
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++++ + L N + I N K+F L LK L+
Sbjct: 76 GASHIQELQLGENKIKEISN---KMFLGLHQLKTLN 108
Score = 29.2 bits (66), Expect = 0.17
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 19/63 (30%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLK----------------YLDGFDAKNNEA 46
L LK ++L++N ++ + FE L +L + + K +
Sbjct: 101 LHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN 157
Query: 47 PDS 49
+
Sbjct: 158 GGA 160
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response,
innate immunity, membrane, receptor; HET: PA1 KDO GMH
FTT DAO MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ +DL ++ TIE + ++ L +L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L LK +++ +N + + + + F L NL++LD
Sbjct: 121 GHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155
Score = 36.5 bits (85), Expect = 7e-04
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + ++ ++EN+ L LK L+
Sbjct: 99 LSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L + L N + ++ F L +L+ L
Sbjct: 74 SLSHLSTLILTGNPIQSLA---LGAFSGLSSLQKLV 106
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+LK++DL N V T+ + F L L++LD
Sbjct: 371 GTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD 402
Score = 34.2 bits (79), Expect = 0.004
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+H+D ++++ + + VF L NL YLD
Sbjct: 395 LEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLD 427
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++D+ + N +F L +L+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLK 451
Score = 31.9 bits (73), Expect = 0.023
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFE-LLPNLKYLD 37
K L +L+ +D N + T + ++ + +L +L+
Sbjct: 515 KCLNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLN 549
Score = 30.8 bits (70), Expect = 0.054
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTN+ L + + +++ F ++L+
Sbjct: 281 LTNVSSFSLVSVTIERVKD-----FSYNFGWQHLE 310
Score = 30.8 bits (70), Expect = 0.069
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LTNL+H+DL +N + +I +L + L
Sbjct: 147 NLTNLEHLDLSSNKIQSIY---CTDLRVLHQMPLL 178
Score = 30.4 bits (69), Expect = 0.076
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L++L+ + + N EN+ +F L NL +LD
Sbjct: 444 LSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLD 476
Score = 30.0 bits (68), Expect = 0.11
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 3 LTNLKHVDLFNNDVTTIENYREK---VFELLPNLKYLD 37
L L ++ + + ++ Y + +F L N+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
+H++L N L +LK L K A
Sbjct: 303 NFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGNAF 341
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 37.0 bits (86), Expect = 4e-04
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 1 KQLTNLKHVDLFNNDVTT-------IENYREKVFELLPNLKYLDG 38
L L+ + L N + YR +V + LPNLK LDG
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181
Score = 30.8 bits (70), Expect = 0.051
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L KH+ L N++ I + + NL+ L
Sbjct: 45 STLKACKHLALSTNNIEKISS-----LSGMENLRILS 76
Score = 26.2 bits (58), Expect = 1.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+ + L N + IEN + + L+ L
Sbjct: 69 MENLRILSLGRNLIKKIEN----LDAVADTLEELW 99
Score = 25.8 bits (57), Expect = 3.1
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + + N + ++ E L NL+ L
Sbjct: 90 AVADTLEELWISYNQIASLSG-----IEKLVNLRVLY 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB:
2v9s_A
Length = 220
Score = 36.2 bits (84), Expect = 6e-04
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ +DL NN ++ + F+ L +L L
Sbjct: 55 YKKLRRIDLSNNQISELA---PDAFQGLRSLNSLV 86
Score = 34.2 bits (79), Expect = 0.003
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +L + L+ N +T + +FE L +L+ L
Sbjct: 78 GLRSLNSLVLYGNKITELPK---SLFEGLFSLQLLL 110
Score = 30.8 bits (70), Expect = 0.057
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L NL + L++N + TI + F L ++ +
Sbjct: 127 LHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTM 157
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 36.2 bits (84), Expect = 7e-04
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
L NL ++LF+ + + + +K DG
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L ++ + N+D+ +++ + LPN+ L
Sbjct: 43 NELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLF 74
Score = 33.1 bits (76), Expect = 0.007
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L LK + L +N ++ I LP L+ L
Sbjct: 109 KDLKKLKSLSLEHNGISDING-----LVHLPQLESLY 140
Score = 33.1 bits (76), Expect = 0.009
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL + L N V + + + L LK L
Sbjct: 87 ANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLS 118
Score = 32.7 bits (75), Expect = 0.012
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L NN +T I L L L
Sbjct: 131 VHLPQLESLYLGNNKITDITV-----LSRLTKLDTLS 162
Score = 32.3 bits (74), Expect = 0.015
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L N+ + L N +T I+ L NL +L
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLF 96
Score = 30.0 bits (68), Expect = 0.12
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L + L +N ++ I L L+ L
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLY 184
Score = 29.3 bits (66), Expect = 0.17
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+++ L N ++ + L NL L+
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE 206
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 36.1 bits (84), Expect = 7e-04
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L NL+ + + +N + + VF+ L NL L
Sbjct: 83 ELKNLETLWVTDNKLQALPI---GVFDQLVNLAELR 115
Score = 35.3 bits (82), Expect = 0.001
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
QL NL + L N + ++ +VF+ L L YL
Sbjct: 107 QLVNLAELRLDRNQLKSLP---PRVFDSLTKLTYLS 139
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L+ + L +N + T+ +F+ L NL+ L
Sbjct: 59 RLTKLRLLYLNDNKLQTLP---AGIFKELKNLETLW 91
Score = 33.8 bits (78), Expect = 0.005
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT+LK + L+NN + + E F+ L LK L
Sbjct: 155 KLTSLKELRLYNNQLKRVP---EGAFDKLTELKTLK 187
Score = 33.0 bits (76), Expect = 0.010
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L ++ L N++ ++ + VF+ L +LK L
Sbjct: 132 LTKLTYLSLGYNELQSLP---KGVFDKLTSLKELR 163
Score = 29.2 bits (66), Expect = 0.20
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40
LT LK + L NN + + E F+ L LK L +
Sbjct: 180 LTELKTLKLDNNQLKRV---PEGAFDSLEKLKMLQLQE 214
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 35.8 bits (83), Expect = 0.001
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ + + N + + VF+ +P L L
Sbjct: 90 AYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTVLV 123
Score = 35.4 bits (82), Expect = 0.001
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L N K V N+ + + + + ++ L+
Sbjct: 44 LNNQKIVTFKNSTMRKLP---AALLDSFRQVELLN 75
Score = 35.4 bits (82), Expect = 0.002
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ ++L + + I+ F ++ L
Sbjct: 66 DSFRQVELLNLNDLQIEEID---TYAFAYAHTIQKLY 99
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + NN++ IE + F+ +L+ L
Sbjct: 138 HNTPKLTTLSMSNNNLERIE---DDTFQATTSLQNLQ 171
Score = 34.6 bits (80), Expect = 0.003
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L + L ND++++ +F P L L
Sbjct: 116 VPLLTVLVLERNDLSSLP---RGIFHNTPKLTTLS 147
Score = 33.9 bits (78), Expect = 0.005
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L VDL N++ I F + L+ L
Sbjct: 245 LNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLY 278
Score = 31.9 bits (73), Expect = 0.020
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ L+ + + NN + + Y + +P LK LD
Sbjct: 269 VKMQRLERLYISNNRLVALNLY----GQPIPTLKVLD 301
Score = 31.6 bits (72), Expect = 0.033
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L+++ L +N + T++ LK L
Sbjct: 316 QFDRLENLYLDHNSIVTLK------LSTHHTLKNLT 345
Score = 31.2 bits (71), Expect = 0.040
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+L+++ L +N +T ++ L+P+L + +
Sbjct: 164 TTSLQNLQLSSNRLTHVD------LSLIPSLFHAN 192
Score = 31.2 bits (71), Expect = 0.043
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + LK +DL +N + + E+ L+ L
Sbjct: 292 QPIPTLKVLDLSHNHLLHV----ERNQPQFDRLENLY 324
Score = 29.6 bits (67), Expect = 0.14
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ +D +N + + + L L
Sbjct: 204 PIAVEELDASHNSINVVRG------PVNVELTILK 232
Score = 27.3 bits (61), Expect = 0.88
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +L H ++ N ++T+ ++ LD
Sbjct: 184 LIPSLFHANVSYNLLSTLAI--------PIAVEELD 211
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 35.9 bits (83), Expect = 0.001
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L N++ T+ + P L+ L
Sbjct: 122 GLGELQELYLKGNELKTLP---PGLLTPTPKLEKLS 154
Score = 35.1 bits (81), Expect = 0.002
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + L NN++T + + L NL L
Sbjct: 147 TPKLEKLSLANNNLTELP---AGLLNGLENLDTLL 178
Score = 34.7 bits (80), Expect = 0.002
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L +DL +N + ++ + + LP L LD
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL----LGQTLPALTVLD 106
Score = 33.9 bits (78), Expect = 0.004
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L +D+ N +T++ L L+ L
Sbjct: 99 LPALTVLDVSFNRLTSLP---LGALRGLGELQELY 130
Score = 32.8 bits (75), Expect = 0.010
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T L ++L ++T ++ V LP L LD
Sbjct: 53 PYTRLTQLNLDRAELTKLQ-----VDGTLPVLGTLD 83
Score = 25.8 bits (57), Expect = 2.5
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL + L N + TI + F L +
Sbjct: 171 LENLDTLLLQENSLYTI---PKGFFGSH-LLPFAF 201
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 35.7 bits (83), Expect = 0.001
Identities = 6/37 (16%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ ++++DL N++ T+ ++ L++L+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLN 175
Score = 35.4 bits (82), Expect = 0.001
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N+K +DL N ++ I L+ L+
Sbjct: 31 QSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLN 64
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L NN + IE NL++ D
Sbjct: 212 SAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFD 243
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T L+ ++L +N + + E L L+ LD
Sbjct: 55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLD 86
Score = 33.8 bits (78), Expect = 0.005
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LK +DL +N + + F+ + ++
Sbjct: 189 VFAKLKTLDLSSNKLAFM----GPEFQSAAGVTWIS 220
Score = 32.7 bits (75), Expect = 0.013
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K + ++ + + + N+K LD
Sbjct: 9 GNRYKIEKVTDSSLKQA---LASLRQSAWNVKELD 40
Score = 31.5 bits (72), Expect = 0.029
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ +DL NN V + P+++ L
Sbjct: 78 SLSTLRTLDLNNNYVQELLV--------GPSIETLH 105
Score = 31.1 bits (71), Expect = 0.041
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K++ L NN +T + + ++YLD
Sbjct: 119 GQGKKNIYLANNKITMLR---DLDEGCRSRVQYLD 150
Score = 30.3 bits (69), Expect = 0.070
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+H++L N + ++ + LK LD
Sbjct: 167 SSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197
Score = 29.6 bits (67), Expect = 0.15
Identities = 3/36 (8%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+++ + NN+++ + K +
Sbjct: 97 VGPSIETLHAANNNISRVS------CSRGQGKKNIY 126
Score = 26.9 bits (60), Expect = 1.4
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+H DL N F ++ +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVA 268
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 35.8 bits (83), Expect = 0.001
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 3 LTNLKHVDLFNN-DVTTIENYREKVFELLPNLKYLD 37
L+ + H+++ N ++T I+ + LP LK+L
Sbjct: 79 LSKVTHIEIRNTRNLTYID---PDALKELPLLKFLG 111
Score = 31.9 bits (73), Expect = 0.023
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + + L + TI F LPN+ +
Sbjct: 30 PPSTQTLKLIETHLRTI---PSHAFSNLPNISRIY 61
Score = 31.5 bits (72), Expect = 0.032
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN 44
K+L LK + +FN + + L+ D N
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLT--KVYSTDIFFILEITD--NP 141
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++L ++ + + V +I+ E L NL+YL+
Sbjct: 41 EELESITKLVVAGEKVASIQG-----IEYLTNLEYLN 72
Score = 34.4 bits (80), Expect = 0.003
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ LTNL+ + L ++++ I L + L+
Sbjct: 107 QNLTNLRELYLNEDNISDISP-----LANLTKMYSLN 138
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L + L N + I L +L Y
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFT 205
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L +++ N ++ I + L LK L+
Sbjct: 240 ANLSQLTWLEIGTNQISDINA-----VKDLTKLKMLN 271
Score = 33.7 bits (78), Expect = 0.005
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+T L ++ + + V + L +L L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLS 183
Score = 33.7 bits (78), Expect = 0.006
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ LTNL++++L N +T I L L L
Sbjct: 63 EYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLY 94
Score = 33.3 bits (77), Expect = 0.007
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L ++ + N +T I + L NL+ L
Sbjct: 85 SNLVKLTNLYIGTNKITDISA-----LQNLTNLRELY 116
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL + L N +T I L + D
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP-----LASLSKMDSAD 339
Score = 32.1 bits (74), Expect = 0.016
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LT LK +++ +N ++ I L L L
Sbjct: 262 KDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLF 293
Score = 32.1 bits (74), Expect = 0.018
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L + + N +T I + L L
Sbjct: 197 SLTSLHYFTAYVNQITDITP-----VANMTRLNSLK 227
Score = 31.7 bits (73), Expect = 0.022
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L VT + E L ++ L
Sbjct: 19 ADLAEGIRAVLQKASVTDVVT-----QEELESITKLV 50
Score = 31.7 bits (73), Expect = 0.026
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+T L + + NN +T + L L +L+
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLE 249
Score = 29.4 bits (67), Expect = 0.14
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L + L NN + + +V L NL L
Sbjct: 284 NNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLF 317
Score = 29.0 bits (66), Expect = 0.22
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 1 KQLTNLKHVDL-FNNDVTTIENYREKVFELLPNLKYLD 37
LT + ++L N++++ + + L YL
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLT 161
>1o6v_A Internalin A; bacterial infection, extracellular recognition,
cell WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++ NN +T I + L L +
Sbjct: 66 YLNNLTQINFSNNQLTDITP-----LKNLTKLVDIL 96
Score = 34.9 bits (81), Expect = 0.002
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + + +I+ E L NL ++
Sbjct: 43 TDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQIN 74
Score = 34.2 bits (79), Expect = 0.003
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL + LFNN +T I+ + L NL L+
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLE 140
Score = 34.2 bits (79), Expect = 0.004
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LTNL+ + NN ++ I +L NL L
Sbjct: 196 AKLTNLESLIATNNQISDITP-----LGILTNLDELS 227
Score = 33.8 bits (78), Expect = 0.005
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL + L N + I L NL LD
Sbjct: 218 GILTNLDELSLNGNQLKDIGT-----LASLTNLTDLD 249
Score = 33.4 bits (77), Expect = 0.007
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LTNL ++L +N ++ I L +L+ L
Sbjct: 131 KNLTNLNRLELSSNTISDISA-----LSGLTSLQQLS 162
Score = 33.4 bits (77), Expect = 0.007
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LT L + + NN + I L NL L
Sbjct: 87 KNLTKLVDILMNNNQIADITP-----LANLTNLTGLT 118
Score = 33.0 bits (76), Expect = 0.010
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L +++L N + I L NL YL
Sbjct: 284 AGLTALTNLELNENQLEDISP-----ISNLKNLTYLT 315
Score = 33.0 bits (76), Expect = 0.011
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL +DL NN ++ + L L L
Sbjct: 240 ASLTNLTDLDLANNQISNLAP-----LSGLTKLTELK 271
Score = 32.6 bits (75), Expect = 0.012
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ +D+ +N V+ I L NL+ L
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLTNLESLI 205
Score = 32.6 bits (75), Expect = 0.012
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L + L N ++ I L L L+
Sbjct: 262 SGLTKLTELKLGANQISNISP-----LAGLTALTNLE 293
Score = 32.2 bits (74), Expect = 0.015
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTN+ + +N ++ + L + L
Sbjct: 350 ANLTNINWLSAGHNQISDLTP-----LANLTRITQLG 381
Score = 32.2 bits (74), Expect = 0.017
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL ++ L+ N+++ I L L+ L
Sbjct: 306 SNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLF 337
Score = 31.5 bits (72), Expect = 0.030
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ + +NN V+ + + L N+ +L
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLS 359
Score = 29.5 bits (67), Expect = 0.17
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L +VT + L + L
Sbjct: 21 TALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQ 52
Score = 28.0 bits (63), Expect = 0.47
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L+ + N VT ++ L L+ LD
Sbjct: 153 SGLTSLQQLSFGNQ-VTDLKP-----LANLTTLERLD 183
Score = 27.2 bits (61), Expect = 0.89
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
LT + + L + T + + +K + G
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 35.4 bits (82), Expect = 0.001
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LT + ++L N + + L ++K LD
Sbjct: 82 KNLTKITELELSGNPLKNVSA-----IAGLQSIKTLD 113
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L NL ++L +N +T + + L + L+
Sbjct: 60 QYLNNLIGLELKDNQITDLAP-----LKNLTKITELE 91
Score = 34.7 bits (80), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + F VTTIE + L NL L+
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69
Score = 33.9 bits (78), Expect = 0.005
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L ++K +DL + +T + L NL+ L
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP-----LAGLSNLQVLY 135
Score = 32.4 bits (74), Expect = 0.016
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTNL+++ + N V+ + L L L
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLK 179
Score = 32.4 bits (74), Expect = 0.017
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+NL+ + L N +T I L NL+YL
Sbjct: 126 AGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLS 157
Score = 32.0 bits (73), Expect = 0.024
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L + +N ++ I LPNL +
Sbjct: 170 ANLSKLTTLKADDNKISDISP-----LASLPNLIEVH 201
Score = 31.6 bits (72), Expect = 0.033
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
+NL V L N +T + + +K G
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
Score = 30.8 bits (70), Expect = 0.049
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL V L NN ++ + NL +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVT 223
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/75 (16%), Positives = 31/75 (41%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDYEG 62
+ +L ++L N + ++ +++ E+ + + + E E++E+ E +
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQ 361
Query: 63 EDEELEEEEDDGLDE 77
E EE+ E
Sbjct: 362 SPEPETSEEEKEDKE 376
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + + +ND+ + ++ PN+ LD
Sbjct: 564 LCPSLTQLQIGSNDIRKVNE------KITPNISVLD 593
Score = 34.2 bits (79), Expect = 0.004
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L ++L N +T I ++ L
Sbjct: 351 SEIKLASLNLAYNQITEIP---ANFCGFTEQVENLS 383
Score = 31.9 bits (73), Expect = 0.023
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N+ ++L NN ++ +++F L ++
Sbjct: 431 KGINVSSINLSNNQISKFP---KELFSTGSPLSSIN 463
Score = 30.8 bits (70), Expect = 0.068
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++++ +N + I N + + + + +D
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFD--AKSVSVMSAID 408
Score = 30.4 bits (69), Expect = 0.093
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +DL N +T + + + LP L +D
Sbjct: 486 NTYLLTSIDLRFNKLTKLSD--DFRATTLPYLVGID 519
Score = 29.2 bits (66), Expect = 0.19
Identities = 4/41 (9%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYR----EKVFELLPNLKYLD 37
K ++ + +D N++ +++ + N+ ++
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Score = 28.5 bits (64), Expect = 0.41
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ L ++ N + F L L+
Sbjct: 328 KMKKLGMLECLYNQLEGKLP----AFGSEIKLASLN 359
Score = 28.5 bits (64), Expect = 0.42
Identities = 4/41 (9%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFEL-----LPNLKYLD 37
L ++ +++ N + E ++ L ++ +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Score = 27.3 bits (61), Expect = 0.96
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKV----FELLPNLKYLD 37
+ L ++L N +T I K F+ L +D
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Score = 27.3 bits (61), Expect = 1.1
Identities = 6/37 (16%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 2 QLTNLKHVDLF-NNDVTTIENYREKVFELLPNLKYLD 37
L +L V+++ ++T + + LP ++ ++
Sbjct: 247 NLKDLTDVEVYNCPNLTKL----PTFLKALPEMQLIN 279
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSE 50
QLT L+ + L ++ N R + + + +
Sbjct: 103 QLTELEVLALGSHGEKV--NERLFGPKGISANMSDEQKQKMRMHYQKTF 149
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 2 QLTNLKHVDLFNNDVTTI---ENYREKVFELLPNLKYLD 37
+LT L+ + N+ E + + E K D
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Score = 26.2 bits (58), Expect = 2.1
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +N++T + K L L+
Sbjct: 182 TLKDTQIGQLSNNITFV----SKAVMRLTKLRQFY 212
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 35.0 bits (81), Expect = 0.002
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
+L + +DL + + +K DG
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206
Score = 33.8 bits (78), Expect = 0.004
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K+L+ +++ + N+++ ++ + NLK L
Sbjct: 38 KELSGVQNFNGDNSNIQSLAG-----MQFFTNLKELH 69
Score = 33.1 bits (76), Expect = 0.008
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ TNLK + L +N ++ + + L L+ L
Sbjct: 60 QFFTNLKELHLSHNQISDLSP-----LKDLTKLEELS 91
Score = 31.5 bits (72), Expect = 0.026
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L N +L VT + + + L ++ +
Sbjct: 16 PGLANAVKQNLGKQSVTDLVS-----QKELSGVQNFN 47
Score = 30.0 bits (68), Expect = 0.091
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ + + NN + +I L L+ LD
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLD 156
Score = 29.6 bits (67), Expect = 0.12
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ +DL N++T L + ++D
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG-----LTRLKKVNWID 178
Score = 28.1 bits (63), Expect = 0.49
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K LT L+ + + N + + L L
Sbjct: 82 KDLTKLEELSVNRNRLKNLNGIP------SACLSRLF 112
Score = 27.3 bits (61), Expect = 0.92
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + L NN++ ++ L NL+ L
Sbjct: 104 PSACLSRLFLDNNELRDTDS-----LIHLKNLEILS 134
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 34.9 bits (80), Expect = 0.002
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L+ + L N + T + L+ LD
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
L NL ++LF+ + + + +K DG
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Score = 33.2 bits (75), Expect = 0.009
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L ++ + N+D+ +++ + LPN+ L
Sbjct: 40 NELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLF 71
Score = 32.0 bits (72), Expect = 0.026
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL + L N + + + + L LK L
Sbjct: 84 TNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLS 115
Score = 31.6 bits (71), Expect = 0.029
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L N+ + L N +T I+ L NL +L
Sbjct: 62 QYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLF 93
Score = 31.2 bits (70), Expect = 0.042
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K L LK + L +N ++ I LP L+ L
Sbjct: 106 KDLKKLKSLSLEHNGISDING-----LVHLPQLESLY 137
Score = 29.7 bits (66), Expect = 0.14
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L+ + L NN +T I L L L
Sbjct: 128 VHLPQLESLYLGNNKITDITV-----LSRLTKLDTLS 159
Score = 28.5 bits (63), Expect = 0.44
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+++ L N ++ + L NL L+
Sbjct: 172 AGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE 203
Score = 27.8 bits (61), Expect = 0.73
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L + L +N ++ I L L+ L
Sbjct: 150 SRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLY 181
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 34.7 bits (79), Expect = 0.003
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 6 LKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDYEGEDE 65
L+ L N + + + ++ FE++ + + K E S+
Sbjct: 523 LQDYTLLINILHSEDLGKDVEFEVVGDAP--EKVGPKQAEDAAKSITNGSDDGAQPSTST 580
Query: 66 ELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEE 104
E+++ +D ++ + +E R +KRK DE+E
Sbjct: 581 AQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKEN 619
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.003
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 20 ENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDYEGEDEEL 67
ENY +FE +DG E E +E S + E L
Sbjct: 1686 ENYSAMIFE-----TIVDGKLK--TEKIFKEINEHSTSYTFRSEKGLL 1726
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 34.1 bits (78), Expect = 0.004
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ + + N + + VF+ +P L L
Sbjct: 96 AYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTVLV 129
Score = 33.7 bits (77), Expect = 0.006
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ ++L + + I+ F ++ L
Sbjct: 72 DSFRQVELLNLNDLQIEEID---TYAFAYAHTIQKLY 105
Score = 33.7 bits (77), Expect = 0.006
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L N K V N+ + + + + ++ L+
Sbjct: 50 LNNQKIVTFKNSTMRKLP---AALLDSFRQVELLN 81
Score = 33.0 bits (75), Expect = 0.010
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + NN++ IE + F+ +L+ L
Sbjct: 145 NTPKLTTLSMSNNNLERIE---DDTFQATTSLQNLQ 177
Score = 33.0 bits (75), Expect = 0.010
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L VDL N++ I F + L+ L
Sbjct: 252 NYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLY 284
Score = 32.2 bits (73), Expect = 0.022
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L + L ND++++ +F P L L
Sbjct: 122 VPLLTVLVLERNDLSSLP---RGIFHNTPKLTTLS 153
Score = 30.7 bits (69), Expect = 0.061
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ L+ + + NN + + + +P LK LD
Sbjct: 275 VKMQRLERLYISNNRLVAL----NLYGQPIPTLKVLD 307
Score = 30.3 bits (68), Expect = 0.094
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L+++ L +N + T++ LK L
Sbjct: 322 QFDRLENLYLDHNSIVTLK------LSTHHTLKNLT 351
Score = 29.5 bits (66), Expect = 0.19
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T+L+++ L +N +T ++ L+P+L + +
Sbjct: 170 TTSLQNLQLSSNRLTHVD------LSLIPSLFHAN 198
Score = 29.5 bits (66), Expect = 0.20
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + LK +DL +N + + E+ L+ L
Sbjct: 298 QPIPTLKVLDLSHNHLLHV----ERNQPQFDRLENLY 330
Score = 28.0 bits (62), Expect = 0.56
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ +D +N + + + L L
Sbjct: 210 PIAVEELDASHNSINVVRG------PVNVELTILK 238
Score = 26.0 bits (57), Expect = 3.0
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +L H ++ N ++T+ ++ LD
Sbjct: 190 LIPSLFHANVSYNLLSTLAI--------PIAVEELD 217
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 33.9 bits (78), Expect = 0.004
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L + L N + ++ VF+ L LK L
Sbjct: 105 HLTQLDKLYLGGNQLKSLP---SGVFDRLTKLKELR 137
Score = 31.2 bits (71), Expect = 0.035
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT LK + L N + +I F+ L NL+ L
Sbjct: 129 RLTKLKELRLNTNQLQSIP---AGAFDKLTNLQTLS 161
Score = 25.8 bits (57), Expect = 3.1
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LTNL+ + L N + ++ F+ L L+ +
Sbjct: 154 LTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTI 184
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L +DL NN ++T+ N F + L L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQ---SFSNMTQLLTLI 84
Score = 29.6 bits (67), Expect = 0.12
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+T L + L N + I + F+ L +L+ L
Sbjct: 76 NMTQLLTLILSYNRLRCIP---PRTFDGLKSLRLLS 108
Score = 26.5 bits (59), Expect = 1.5
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 19/63 (30%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLK----------------YLDGFDAKNNEA 46
L +L+ + L ND++ + E F L L +L + +
Sbjct: 101 LKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKE 157
Query: 47 PDS 49
P
Sbjct: 158 PGI 160
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 34.1 bits (78), Expect = 0.004
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + + +ND+ ++ +L P L LD
Sbjct: 804 TCPSLIQLQIGSNDIRKVDE------KLTPQLYILD 833
Score = 33.7 bits (77), Expect = 0.007
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + L N + I E ++ L
Sbjct: 593 TNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLG 625
Score = 31.0 bits (70), Expect = 0.048
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ L +D +N V +E F L L
Sbjct: 571 KMVKLGLLDCVHNKVRHLEA-----FGTNVKLTDLK 601
Score = 30.6 bits (69), Expect = 0.067
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N V L N++ ++F + +
Sbjct: 671 KGINASTVTLSYNEIQKF---PTELFATGSPISTII 703
Score = 29.5 bits (66), Expect = 0.19
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 1 KQLTNLKHVDLFNNDVTTIEN----YREKVFELLPNLKYLD 37
+ + + L NN +T+I ++ ++ L +D
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Score = 28.7 bits (64), Expect = 0.30
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFEL------LPNLKYLD 37
L L+ +++ N + + L P ++
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Score = 28.7 bits (64), Expect = 0.30
Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ + N++ + + L LD
Sbjct: 546 TGPKIQIFYMGYNNLEEFPA--SASLQKMVKLGLLD 579
Score = 28.3 bits (63), Expect = 0.50
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L +DL N +T++ + + LP L +D
Sbjct: 726 NTYLLTTIDLRFNKLTSLSD--DFRATTLPYLSNMD 759
Score = 27.9 bits (62), Expect = 0.62
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 2 QLTNLKHVDLF-NNDVTTIENYREKVFELLPNLKYLD 37
L +L V+L+ ++T + LP L+ L+
Sbjct: 489 NLKDLTDVELYNCPNMTQL----PDFLYDLPELQSLN 521
Score = 26.8 bits (59), Expect = 1.4
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++ + +N + I N + + + +D
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFN--AKSVYVMGSVD 650
Score = 25.6 bits (56), Expect = 4.4
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L ++D+ N ++ LK
Sbjct: 751 TLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFG 782
Score = 25.2 bits (55), Expect = 4.9
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFEL--LPNLKYLD 37
K + + VD N + + + N +
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 34.1 bits (78), Expect = 0.004
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N+K +DL N ++ I L+ L+
Sbjct: 31 QSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLN 64
Score = 34.1 bits (78), Expect = 0.004
Identities = 6/37 (16%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ ++++DL N++ T+ ++ L++L+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLN 175
Score = 32.9 bits (75), Expect = 0.010
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L NN + IE NL++ D
Sbjct: 212 SAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFD 243
Score = 32.9 bits (75), Expect = 0.010
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LK +DL +N + + F+ + ++
Sbjct: 189 VFAKLKTLDLSSNKLAFM----GPEFQSAAGVTWIS 220
Score = 31.7 bits (72), Expect = 0.028
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T L+ ++L +N + + E L L+ LD
Sbjct: 55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLD 86
Score = 31.0 bits (70), Expect = 0.053
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ L+ +DL NN V + P+++ L
Sbjct: 78 SLSTLRTLDLNNNYVQELLV--------GPSIETLH 105
Score = 31.0 bits (70), Expect = 0.054
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K + ++ + + + N+K LD
Sbjct: 9 GNRYKIEKVTDSSLKQA---LASLRQSAWNVKELD 40
Score = 30.2 bits (68), Expect = 0.10
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
K++ L NN +T + + ++YLD
Sbjct: 119 GQGKKNIYLANNKITMLR---DLDEGCRSRVQYLD 150
Score = 29.4 bits (66), Expect = 0.17
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+H++L N + ++ + LK LD
Sbjct: 167 SSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197
Score = 28.7 bits (64), Expect = 0.30
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +D T+ + +V L+
Sbjct: 334 NQARQREIDALKEQYRTVID---QVTLRKQAKITLE 366
Score = 27.9 bits (62), Expect = 0.61
Identities = 3/36 (8%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+++ + NN+++ + K +
Sbjct: 97 VGPSIETLHAANNNISRVS------CSRGQGKKNIY 126
Score = 25.6 bits (56), Expect = 3.6
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ NL+H DL N F ++ +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVA 268
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 33.6 bits (77), Expect = 0.005
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +D+ + ++ E L L+
Sbjct: 201 ASGPVILDISRTRIHSLP---SYGLENLKKLRARS 232
Score = 33.3 bits (76), Expect = 0.007
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L NL+++ + N + + + LD
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLD 134
Score = 32.1 bits (73), Expect = 0.018
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 1 KQLTNLKHVDLFN-NDVTTIENYREKVFELLPNLKYLD 37
L L + + N++ I + F+ LPNL+YL
Sbjct: 76 SNLPKLHEIRIEKANNLLYINP---EAFQNLPNLQYLL 110
Score = 32.1 bits (73), Expect = 0.019
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 3 LTNLKHVDLFNND-VTTIENYREKVFELLPNLKYLD 37
+L+ +++ ND + IE VF LP L +
Sbjct: 53 FGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIR 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich
repeat protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 197
Score = 33.0 bits (76), Expect = 0.007
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q+ +L ++ L N +VT + E N+K L
Sbjct: 42 QMNSLTYITLANINVTDLTG-----IEYAHNIKDLT 72
Score = 32.6 bits (75), Expect = 0.013
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ N+K + + N T L NL+ L
Sbjct: 63 EYAHNIKDLTINNIHATNYNP-----ISGLSNLERLR 94
Score = 29.5 bits (67), Expect = 0.13
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+NL+ + + DVT+ + L +L LD
Sbjct: 85 SGLSNLERLRIMGKDVTSDK---IPNLSGLTSLTLLD 118
Score = 28.0 bits (63), Expect = 0.44
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT+L +D+ ++ ++ LP + +D
Sbjct: 109 SGLTSLTLLDISHSA---HDDSILTKINTLPKVNSID 142
Score = 27.6 bits (62), Expect = 0.70
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 1 KQLTNLKHVDL-FNNDVTTIENYREKVFELLPNLKYLD 37
L + +DL +N +T I + LP LK L+
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLN 165
Score = 24.9 bits (55), Expect = 5.4
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 1 KQLTNLKHVDLFNNDVTTIE 20
+ L + F+ + +
Sbjct: 178 EDFPKLNQLYAFSQTIGGKK 197
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 33.1 bits (76), Expect = 0.008
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L ++ N++T ++ L +LD
Sbjct: 189 QNKLLNRLNCDTNNITKLD------LNQNIQLTFLD 218
Score = 33.1 bits (76), Expect = 0.008
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+QL L +D N+ +T + E L L L
Sbjct: 39 EQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLI 70
Score = 32.7 bits (75), Expect = 0.014
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L + +N++TT++ NL YL
Sbjct: 62 KLTGLTKLICTSNNITTLD------LSQNTNLTYLA 91
Score = 31.6 bits (72), Expect = 0.027
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L +D +N +T I+ L L Y D
Sbjct: 210 QNIQLTFLDCSSNKLTEID------VTPLTQLTYFD 239
Score = 31.6 bits (72), Expect = 0.030
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q TNL ++ +N +T ++ L L YL+
Sbjct: 83 QNTNLTYLACDSNKLTNLD------VTPLTKLTYLN 112
Score = 31.2 bits (71), Expect = 0.046
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T L +D +T ++ P L YL
Sbjct: 295 HNTQLYLLDCQAAGITELD------LSQNPKLVYLY 324
Score = 30.8 bits (70), Expect = 0.063
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L ++ L N ++T ++ LK L
Sbjct: 316 QNPKLVYLYLNNTELTELD------VSHNTKLKSLS 345
Score = 30.8 bits (70), Expect = 0.066
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T L +D N +T ++ L L+
Sbjct: 168 PQTQLTTLDCSFNKITELD------VSQNKLLNRLN 197
Score = 29.3 bits (66), Expect = 0.22
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPD 48
Q L +++ N +T I+ L LD K D
Sbjct: 125 QNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLD 165
Score = 28.9 bits (65), Expect = 0.24
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L +++ N +T ++ P L YL+
Sbjct: 104 PLTKLTYLNCDTNKLTKLD------VSQNPLLTYLN 133
Score = 28.5 bits (64), Expect = 0.32
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
T LK + N + + +P L
Sbjct: 337 HNTKLKSLSCVNAHIQDFSS-----VGKIPALNNNF 367
Score = 28.1 bits (63), Expect = 0.56
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L + D N +T ++ L L L
Sbjct: 231 PLTQLTYFDCSVNPLTELD------VSTLSKLTTLH 260
Score = 27.3 bits (61), Expect = 1.0
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPD 48
L+ L + D+ I+ L Y + + D
Sbjct: 251 STLSKLTTLHCIQTDLLEID------LTHNTQLIYFQAEGCRKIKELD 292
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 32.7 bits (75), Expect = 0.009
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT+L +++L N + ++ VF+ L LK L
Sbjct: 74 KLTSLTYLNLSTNQLQSLP---NGVFDKLTQLKELA 106
Score = 30.8 bits (70), Expect = 0.052
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT LK + L N + ++ + VF+ L LK L
Sbjct: 98 KLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLR 130
Score = 25.4 bits (56), Expect = 4.0
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LT LK + L+ N + ++ + VF+ L +L+Y+
Sbjct: 123 LTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYI 153
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 33.1 bits (76), Expect = 0.010
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LTNL +++L +N + ++ + VF+ L NL LD
Sbjct: 131 KLTNLTYLNLAHNQLQSLP---KGVFDKLTNLTELD 163
Score = 30.0 bits (68), Expect = 0.11
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LTNL +DL N + ++ E VF+ L LK L
Sbjct: 155 KLTNLTELDLSYNQLQSLP---EGVFDKLTQLKDLR 187
Score = 29.6 bits (67), Expect = 0.13
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LTNL ++ L N + ++ N VF+ L NLK L
Sbjct: 83 ELTNLTYLILTGNQLQSLPN---GVFDKLTNLKELV 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 32.4 bits (74), Expect = 0.013
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L +DL N +T + VF+ L +LK L
Sbjct: 86 SLTQLTVLDLGTNQLTVLP---SAVFDRLVHLKELF 118
Score = 26.6 bits (59), Expect = 1.5
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPD 48
+L +LK + + N +T + + E L +L +L + P
Sbjct: 110 RLVHLKELFMCCNKLTEL----PRGIERLTHLTHLALDQNQLKSIPH 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 31.8 bits (73), Expect = 0.021
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L +DL NN +T + VF+ L L L
Sbjct: 52 RLTQLTRLDLDNNQLTVLP---AGVFDKLTQLTQLS 84
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR,
leucine-rich repeat, LRR, system; 2.10A {Petromyzon
marinus}
Length = 174
Score = 31.8 bits (73), Expect = 0.022
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL+ + +N +T I VF+ L L LD
Sbjct: 55 HLVNLQQLYFNSNKLTAIP---TGVFDKLTQLTQLD 87
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 31.5 bits (72), Expect = 0.026
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L + L N + ++ + VF+ L L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLP---DGVFDKLTKLTILY 82
Score = 29.9 bits (68), Expect = 0.092
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+LT L + L N + ++ VF+ L LK L
Sbjct: 74 KLTKLTILYLHENKLQSLP---NGVFDKLTQLKELA 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 31.5 bits (72), Expect = 0.032
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + LK +D+ NN + + +L P+L+++
Sbjct: 150 QNSSFLKIIDVDNNSLKKL-------PDLPPSLEFIA 179
Score = 30.3 bits (69), Expect = 0.096
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
+ L L + NN + T+ +L P+L+ L+ D + P+
Sbjct: 234 QNLPFLTTIYADNNLLKTL-------PDLPPSLEALNVRDNYLTDLPEL 275
Score = 30.0 bits (68), Expect = 0.13
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L L + NN + + +L +L+ +
Sbjct: 193 NLPFLTAIYADNNSLKKL-------PDLPLSLESIV 221
Score = 29.2 bits (66), Expect = 0.24
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 1 KQLTNLKHVDLFNNDVTTI-------------ENYREKVFELLPNLKYLDGFDAKNNEAP 47
+L+ +++ +N +T + EN + EL PNL YL+ +
Sbjct: 254 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313
Query: 48 DS 49
D
Sbjct: 314 DL 315
Score = 28.8 bits (65), Expect = 0.28
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ + NN + + + LP L +
Sbjct: 170 DLPPSLEFIAAGNNQLEELPE-----LQNLPFLTAIY 201
Score = 28.0 bits (63), Expect = 0.50
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ + NN + + + LP L +
Sbjct: 212 DLPLSLESIVAGNNILEELPE-----LQNLPFLTTIY 243
Score = 27.3 bits (61), Expect = 0.92
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 1 KQLTNLKHVDLFNNDVTTIE------------NYREKVFELLPNLKYLD 37
+ NLK + + N + ++ +V EL NLK L
Sbjct: 354 ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402
Score = 26.9 bits (60), Expect = 1.5
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPD 48
+L+ + N +T + EL +LK L + D
Sbjct: 90 PPHLESLVASCNSLTELP-------ELPQSLKSLLVDNNNLKALSD 128
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + N + + EL NLK L
Sbjct: 336 PPRLERLIASFNHLAEVP-------ELPQNLKQLH 363
Score = 26.1 bits (58), Expect = 2.2
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
++L N ++++ EL P+L+ L
Sbjct: 70 DRQAHELELNNLGLSSLP-------ELPPHLESLV 97
Score = 25.7 bits (57), Expect = 3.5
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L+ +++ NN + + L P L+ L
Sbjct: 315 LPPSLEELNVSNNKLIEL-------PALPPRLERLI 343
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 30.6 bits (69), Expect = 0.069
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 57 GDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
G DY+ E EE ++G D + E+EE D E ++ K+K ++ +
Sbjct: 20 GHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYD 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 30.3 bits (69), Expect = 0.084
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ LK +++ +N + L +L+ LD
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSG--GLKLNSLEVLD 157
Score = 29.9 bits (68), Expect = 0.14
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L +L+ +DL N ++ + + LK+L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Score = 29.1 bits (66), Expect = 0.21
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
L +L+++ L N T I + + L LD
Sbjct: 267 PLKSLQYLSLAENKFTGEIP---DFLSGACDTLTGLD 300
Score = 29.1 bits (66), Expect = 0.24
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
+ L+ + L +N+ + + + LK LD
Sbjct: 316 SCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLD 349
Score = 29.1 bits (66), Expect = 0.25
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 3 LTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
LKH+ + N ++ ++ NL++LD
Sbjct: 177 CGELKHLAISGNKISGDVD------VSRCVNLEFLD 206
Score = 28.7 bits (65), Expect = 0.29
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
T LK +++ +N I L +L+YL
Sbjct: 245 TCTELKLLNISSNQFVGPIPP------LPLKSLQYLS 275
Score = 28.7 bits (65), Expect = 0.30
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
LT L+ + L N+ + ++ F+ +L LD
Sbjct: 75 SLTGLESLFLSNSHINGSVSG-----FKCSASLTSLD 106
Score = 28.7 bits (65), Expect = 0.36
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
++ LK +DL N+ + + E + L +L LD
Sbjct: 341 KMRGLKVLDLSFNEFSGELP---ESLTNLSASLLTLD 374
Score = 28.3 bits (64), Expect = 0.46
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 2 QLTNLKHVDLFNNDVT-----TIENYREKVFELLPNLKYLD 37
+ L+H+D+ N ++ I LK L+
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAIST--------CTELKLLN 253
Score = 28.3 bits (64), Expect = 0.49
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 3 LTNLKHVDLFNNDVT-----TIENYREKVFELLPNLKYLD 37
TNL + L NN +T I L NL L
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGR--------LENLAILK 520
Score = 27.2 bits (61), Expect = 0.95
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 2 QLTNLKHVDLFNNDVT----TIENYREKVFELLPNLKYLD 37
+ NL+ +D+ +N+ + + + L++LD
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGD--------CSALQHLD 229
Score = 27.2 bits (61), Expect = 1.0
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLD 37
+L +DL N ++ + LK+L+
Sbjct: 98 CSASLTSLDLSRNSLSGPVTTLTS--LGSCSGLKFLN 132
Score = 26.4 bits (59), Expect = 1.9
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 9/39 (23%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFEL--LPNLKYLD 37
L +DL N + L+ L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPP------FFGSCSLLESLA 324
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 30.2 bits (68), Expect = 0.11
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 57 GDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
G DY+ E EE ++G D + E+EE D E ++ K+K ++ +
Sbjct: 23 GHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYD 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 28.7 bits (65), Expect = 0.32
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 2 QLTNLKHVDLFNNDVT-----TIENYREKVFELLPNLKYLD 37
+LT L ++ + + +V+ + + L LD
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQ--------IKTLVTLD 131
Score = 27.9 bits (63), Expect = 0.61
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 2 QLTNLKHVDLFNNDVT-----TIENYREKVFELLPNLKYLD 37
Q+ L +D N ++ +I + LPNL +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISS--------LPNLVGIT 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 28.6 bits (64), Expect = 0.32
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLK 34
NL +D+ + TTI ++ F L
Sbjct: 226 PNLVSLDISKTNATTIPDF---TFAQKKYLL 253
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 28.1 bits (63), Expect = 0.43
Identities = 2/39 (5%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 68 EEEEDDGLD-EEDGEDEEEDTEGKEVRGKKRKHDEEEEG 105
E+ + + ++ + + E + + + +
Sbjct: 354 YEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGLKNRIDA 392
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 28.2 bits (63), Expect = 0.54
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 51 DDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
DD+ E +D G +E L EE E + ED G ++ R EEG+
Sbjct: 4 DDDLLESEDDYGSEEALSEENV---HEASANPQPEDFHGIDIVINHRLKTSLEEGK 56
Score = 26.7 bits (59), Expect = 1.5
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 41 AKNNEAPDSEDDEESEGDDYEGEDEEL--EEEEDDG------LDEEDGEDEEEDTEGKEV 92
+++ +SEDD SE E E + +D ++ EE ++
Sbjct: 2 PSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKT 61
Query: 93 RGKKRKHDEEEE 104
E E
Sbjct: 62 VPDLNNCKENYE 73
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 28.1 bits (63), Expect = 0.58
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 53 EESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTE 88
+ DY + + + D G ED +
Sbjct: 436 HAATRPDYISWGTQEQVDVDGGQKLISEEDLLLEHH 471
Score = 27.4 bits (61), Expect = 0.93
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 44 NEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEE 103
+E S + + D+Y D + E + D K + + +
Sbjct: 419 DEMDTSREIVQQLIDEYH------AATRPDYISWGTQEQVDVDGGQKLISEEDLLLEHHH 472
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 27.9 bits (61), Expect = 0.69
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 45 EAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDG 80
E P + D+++ +D D+ EE +DD D+ED
Sbjct: 305 EEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDA 340
Score = 27.5 bits (60), Expect = 0.75
Identities = 7/50 (14%), Positives = 25/50 (50%)
Query: 40 DAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEG 89
+ + EA + ++ + DD +++ + ++ ++D +D+E+ +
Sbjct: 294 ELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 24.8 bits (53), Expect = 7.7
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 37 DGFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTE 88
D D E D + +D E++ D E+ +D+++D E
Sbjct: 287 DEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 27.0 bits (61), Expect = 0.90
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + ++T + + LP L
Sbjct: 25 ELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQ 56
Score = 27.0 bits (61), Expect = 0.96
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + ++T + + LP L
Sbjct: 2 ELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQ 33
Score = 26.3 bits (59), Expect = 1.8
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + ++T + + LP L
Sbjct: 48 ELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQ 79
Score = 24.7 bits (55), Expect = 5.4
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L + ++T + + LP L
Sbjct: 71 ELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQ 102
Score = 24.7 bits (55), Expect = 6.5
Identities = 4/38 (10%), Positives = 10/38 (26%), Gaps = 8/38 (21%)
Query: 2 QLTNLKHVDLFNNDVTTI--ENYREKVFELLPNLKYLD 37
+L + ++T + LP+
Sbjct: 117 ELPEKSKLQEIYQELTQLKAA------VGELPDQSKQQ 148
Score = 24.3 bits (54), Expect = 8.4
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 12/40 (30%)
Query: 2 QLTNLKHVDLFNNDVTT----IENYREKVFELLPNLKYLD 37
+L + ++T + LP L
Sbjct: 94 ELPEKSKLQEIYQELTELKAAVGE--------LPEKSKLQ 125
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 27.3 bits (61), Expect = 1.0
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 25 KVFELLPN--LKYLDGFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGED 82
+ + + L+ F K D ED+++S+ ++ + +++G+
Sbjct: 226 GLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDI 285
Query: 83 EEE 85
E
Sbjct: 286 HLE 288
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.2 bits (61), Expect = 1.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 53 EESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEE 103
+ ++ E+E +EE++D DE E+EEE+ + K + +K D E
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP:
c.37.1.11 PDB: 1p9w_A*
Length = 418
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 58 DDYEGEDEELEEEEDDGLDEEDGEDEEEDT 87
+D + ++ ++ ED + E+D
Sbjct: 2 EDIGADSDDFFSLAEELPQNEDLLESEDDA 31
Score = 24.8 bits (55), Expect = 5.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 51 DDEESEGDDYEGEDEELEEEEDDGLDEED 79
+D ++ DD+ EEL + ED E+D
Sbjct: 2 EDIGADSDDFFSLAEELPQNEDLLESEDD 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 26.4 bits (59), Expect = 1.5
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+L++L+H+ + + + + + L+ L
Sbjct: 102 RLSHLQHMTIDAAGLMELPD----TMQQFAGLETLT 133
Score = 26.1 bits (58), Expect = 2.1
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
Q L+ + L N + + L L+ L
Sbjct: 125 QFAGLETLTLARNPLRALPA----SIASLNRLRELS 156
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 26.4 bits (59), Expect = 2.1
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 64 DEELEEEEDDGLDEEDGEDEEEDTEG 89
D LEE ED + + EG
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAEG 370
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 25.8 bits (57), Expect = 2.7
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 61 EGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
E+ E E + + E+ + G + + E
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEAS 222
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 25.9 bits (57), Expect = 2.8
Identities = 3/48 (6%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 40 DAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDT 87
+ + + + +E + + + + D G+ ++
Sbjct: 415 VLRASAQELVQSYQVAEESGAKAKVQ--DSAGDTGMRAAAAGVSDDAR 460
Score = 24.7 bits (54), Expect = 7.0
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 3/60 (5%)
Query: 45 EAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEE 104
S + E + + ++ G + G + RG D +
Sbjct: 415 VLRASAQELVQSYQVAEESGAKAKVQDSAG---DTGMRAAAAGVSDDARGSMSLRDLVDR 471
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 25.9 bits (56), Expect = 3.0
Identities = 6/58 (10%), Positives = 14/58 (24%)
Query: 49 SEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
+ D + D E +E+++ D E + +
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAA 252
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 25.6 bits (56), Expect = 3.4
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 50 EDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKE 91
+++ E D + + E+++ +E EE+ E KE
Sbjct: 188 DEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKE 229
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 25.6 bits (56), Expect = 3.5
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 35 YLDGFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEE 85
+ GF N E + + + + ++ E+E+++ D++ +D+
Sbjct: 52 LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 102
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 25.3 bits (55), Expect = 4.0
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 40 DAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKH 99
+ ++ + + EE+E++ + E+ +EE E E + + +
Sbjct: 183 RLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Query: 100 DEEEEGE 106
EE
Sbjct: 243 AEENADN 249
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB:
1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E*
1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E*
1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 25.2 bits (56), Expect = 4.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 31 PNLKYLDGFDAKNNEAPDSEDD 52
P+LK G +E +D+
Sbjct: 40 PDLKVAGGASMVPSETNPFQDN 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 4.4
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 23 REKVFELLPNLK-YLDGFDAKNNEAPDS 49
++ + +L +LK Y A DS
Sbjct: 19 KQALKKLQASLKLY----------ADDS 36
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 25.6 bits (56), Expect = 4.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 52 DEESEGDDYEGEDEELEEEEDDGLDEED 79
+ + + Y ED E+E + ED
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPITAED 29
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 24.9 bits (54), Expect = 6.2
Identities = 4/36 (11%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + L +++++ + L P + L+
Sbjct: 57 LINQFSELQLNRLNLSSLPD------NLPPQITVLE 86
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 24.7 bits (54), Expect = 7.5
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 58 DDYEGEDEELEEEEDDGLDEEDGEDEEEDTEG 89
+Y+ + ++ ++ + E+EE + E
Sbjct: 420 SEYQ------QYQDATADEQGEFEEEEGEDEA 445
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 24.9 bits (54), Expect = 8.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ L + +F N +T++ L P L+ L
Sbjct: 120 PSGLCKLWIFGNQLTSLP-------VLPPGLQELS 147
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21;
immune system, BF21, immune response, immunoglobulin
domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Length = 329
Score = 24.2 bits (53), Expect = 9.2
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 79 DGEDEEEDTEGKEVR 93
DG +D + +
Sbjct: 237 DGAVRGQDAQSGGIV 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.297 0.129 0.345
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,755,069
Number of extensions: 108420
Number of successful extensions: 1301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 742
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 51 (23.3 bits)