RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8459
(106 letters)
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 48.9 bits (116), Expect = 2e-09
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L ++L N + E +E++ E+LP++ +
Sbjct: 87 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 24.3 bits (52), Expect = 3.3
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPD 48
QL + H+DL +N + + L L+ L D
Sbjct: 18 QLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDG 60
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 43.7 bits (101), Expect = 6e-07
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +D+ + ++ E L L+
Sbjct: 198 HGASGPVILDISRTRIHSLP---SYGLENLKKLRARS 231
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.9 bits (92), Expect = 8e-06
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSED 51
L +L ++ + N VT ++YR V +P ++ LD K E ++E
Sbjct: 109 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK 159
Score = 33.0 bits (74), Expect = 0.003
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +DL + IEN + L +D
Sbjct: 17 AVRDRELDLRGYKIPVIEN----LGATLDQFDAID 47
Score = 23.7 bits (50), Expect = 5.5
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 1 KQLTNLKHVDLFNNDVTTIENY 22
L +D +N++ ++ +
Sbjct: 38 ATLDQFDAIDFSDNEIRKLDGF 59
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 38.6 bits (89), Expect = 2e-05
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 2 QLTNLKHVDLFNNDVTTI----ENYREKVFELLPNLKYLDG 38
+ L+ + L N ++ Y + E P L LDG
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDG 153
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 38.9 bits (89), Expect = 3e-05
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L + + F VTTIE + L NL L+
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69
Score = 37.7 bits (86), Expect = 8e-05
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L NL V L NN ++ + NL +
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-----LANTSNLFIVT 223
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 38.1 bits (87), Expect = 6e-05
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+++ L N ++ + L NL L+
Sbjct: 176 GLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE 206
Score = 32.7 bits (73), Expect = 0.004
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
+L ++ + N+D+ +++ + LPN+ L
Sbjct: 43 NELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 73
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 36.2 bits (82), Expect = 3e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ +DL NN +T I+ + F+ L NL L
Sbjct: 31 PDTALLDLQNNKITEIK---DGDFKNLKNLHTLI 61
Score = 30.8 bits (68), Expect = 0.024
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
K L NL + L NN ++ I F L L+ L + E P+
Sbjct: 52 KNLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKNQLKELPEK 97
Score = 30.4 bits (67), Expect = 0.031
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
+ + V LF+N V E + F + +
Sbjct: 270 KKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQ 304
Score = 26.5 bits (57), Expect = 0.59
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNL 33
L L+ + L N + + K + L
Sbjct: 77 PLVKLERLYLSKNQLKELPEKMPKTLQELRVH 108
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.8 bits (81), Expect = 3e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
LT L+ +D+ +N V+ I V L NL+ L
Sbjct: 170 NLTTLERLDISSNKVSDIS-----VLAKLTNLESL 199
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 35.0 bits (79), Expect = 7e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 4 TNLKHVDLFNNDVTTI-------ENYREKVFELLPNLKYLDGFDAKNNEAPDSE 50
L+ + L N + YR +V + LPNLK LDG +E +
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193
Score = 30.0 bits (66), Expect = 0.037
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L KH+ L N++ I + + NL+ L
Sbjct: 46 TLKACKHLALSTNNIEKISS-----LSGMENLRIL 75
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 35.0 bits (79), Expect = 7e-04
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LT L+ + NN V+ + + L N+ +L
Sbjct: 327 SLTKLQRLFFANNKVSDVSS-----LANLTNINWLS 357
Score = 33.1 bits (74), Expect = 0.003
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
LTN+ + +N ++ + L + L
Sbjct: 349 NLTNINWLSAGHNQISDLTP-----LANLTRITQLG 379
Score = 31.1 bits (69), Expect = 0.015
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
L NL ++ NN +T I + L L +
Sbjct: 64 YLNNLTQINFSNNQLTDITP-----LKNLTKLVDI 93
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 34.0 bits (76), Expect = 0.002
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
L+ + N + + EL NLK L
Sbjct: 303 PPRLERLIASFNHLAEVP-------ELPQNLKQLH 330
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 31.3 bits (69), Expect = 0.013
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDGFDAKNN 44
QL L +++ N++ I NL+ D NN
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ--------GGNLQRFDVSAYANN 301
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.2 bits (63), Expect = 0.085
Identities = 4/39 (10%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 1 KQLTNLKHVDLFNNDVT--TIENYREKVFELLPNLKYLD 37
+ L ++L +N++ + + + ++ L
Sbjct: 52 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90
Score = 28.8 bits (62), Expect = 0.13
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 1 KQLTNLKHVDLFNNDVT--TIENYREKVFELLPNLKYLD 37
+L+ +DL NN + I E V + L+ L
Sbjct: 394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 25.6 bits (54), Expect = 1.5
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEE 54
+++ +L ++L N + ++ +++ E+ E + +D EE
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREVFST--------RGRGELDELDDMEE 344
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 25.2 bits (54), Expect = 1.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 47 PDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEE 102
P++E+D E + + ++D+ DEEDG+D+ D + R+ E
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAE 111
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 24.2 bits (51), Expect = 4.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1 KQLTNLKHVDLF 12
KQLT L+ +DLF
Sbjct: 7 KQLTGLRFIDLF 18
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 23.6 bits (51), Expect = 5.4
Identities = 10/50 (20%), Positives = 29/50 (58%)
Query: 49 SEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRK 98
S++++ +GDD++ +E+ ++ + +EE E+ E G+ + +++
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKR 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.297 0.129 0.345
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,149
Number of extensions: 20761
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 52
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 47 (22.7 bits)