BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy846
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
 pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
          Length = 582

 Score = 28.5 bits (62), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 52  SFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           S+  + V+ K   T+   LF  M+  P+SFF++  +G + +  T D  +V
Sbjct: 86  SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQV 135


>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
           Its Inward- Facing Conformation
          Length = 598

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 66  LHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDM 98
           L   LF+K+   P+ FF+ TP G I +    D+
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPHGDIISRVINDV 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,601,438
Number of Sequences: 62578
Number of extensions: 72009
Number of successful extensions: 235
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)