Query psy846
Match_columns 103
No_of_seqs 118 out of 1110
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:27:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 99.3 3.1E-12 6.6E-17 105.7 8.0 76 28-103 855-930 (1381)
2 PLN03232 ABC transporter C fam 98.9 5.3E-09 1.1E-13 88.2 9.5 73 30-102 949-1021(1495)
3 PLN03130 ABC transporter C fam 98.9 5.7E-09 1.2E-13 88.5 9.7 73 30-102 952-1024(1622)
4 TIGR00957 MRP_assoc_pro multi 98.9 6.6E-09 1.4E-13 87.7 9.6 74 30-103 1004-1077(1522)
5 KOG0058|consensus 98.8 3.6E-08 7.9E-13 77.4 8.3 70 33-102 190-259 (716)
6 TIGR01271 CFTR_protein cystic 98.7 1E-07 2.2E-12 80.6 9.3 69 34-102 928-996 (1490)
7 PTZ00243 ABC transporter; Prov 98.7 1.1E-07 2.3E-12 80.8 9.2 72 31-102 998-1069(1560)
8 PF00664 ABC_membrane: ABC tra 98.6 5.1E-07 1.1E-11 61.2 7.9 62 41-102 51-112 (275)
9 PRK11174 cysteine/glutathione 98.4 2.5E-06 5.5E-11 66.0 9.6 70 33-102 65-134 (588)
10 PRK11160 cysteine/glutathione 98.4 2.3E-06 5E-11 66.3 9.1 67 36-102 65-131 (574)
11 TIGR02857 CydD thiol reductant 98.4 2.9E-06 6.2E-11 64.9 9.4 72 31-102 44-115 (529)
12 TIGR01194 cyc_pep_trnsptr cycl 98.4 1.6E-06 3.5E-11 66.9 7.9 66 37-102 59-124 (555)
13 PRK10789 putative multidrug tr 98.4 4.3E-06 9.3E-11 64.7 9.6 71 32-102 37-107 (569)
14 TIGR02868 CydC thiol reductant 98.3 4.5E-06 9.8E-11 63.9 9.5 63 40-102 62-124 (529)
15 TIGR00958 3a01208 Conjugate Tr 98.3 3.5E-06 7.6E-11 66.8 8.9 69 34-102 204-272 (711)
16 PTZ00265 multidrug resistance 98.3 4E-06 8.7E-11 71.1 9.2 71 32-102 867-939 (1466)
17 PTZ00265 multidrug resistance 98.2 1.1E-05 2.3E-10 68.6 9.4 73 30-102 96-168 (1466)
18 PRK10790 putative multidrug tr 98.2 1.5E-05 3.3E-10 61.8 9.3 66 37-102 71-136 (592)
19 TIGR02203 MsbA_lipidA lipid A 98.2 1.7E-05 3.6E-10 61.1 9.1 72 31-102 54-125 (571)
20 TIGR01846 type_I_sec_HlyB type 98.2 1.6E-05 3.4E-10 62.9 9.1 69 33-102 181-249 (694)
21 PRK10522 multidrug transporter 98.1 1.5E-05 3.2E-10 61.5 8.3 58 45-102 62-119 (547)
22 COG1132 MdlB ABC-type multidru 98.1 2.1E-05 4.5E-10 60.8 8.9 70 33-102 54-123 (567)
23 TIGR01193 bacteriocin_ABC ABC- 98.1 1.7E-05 3.7E-10 62.8 8.6 67 35-102 200-266 (708)
24 TIGR03797 NHPM_micro_ABC2 NHPM 98.1 2.2E-05 4.8E-10 62.0 8.8 69 33-102 178-246 (686)
25 KOG0055|consensus 98.1 2.9E-05 6.2E-10 64.5 9.4 70 32-102 708-779 (1228)
26 TIGR02204 MsbA_rel ABC transpo 98.0 4.6E-05 9.9E-10 58.8 9.0 70 33-102 60-129 (576)
27 TIGR03796 NHPM_micro_ABC1 NHPM 98.0 3.8E-05 8.1E-10 60.8 8.7 67 34-101 197-263 (710)
28 TIGR01192 chvA glucan exporter 98.0 4.7E-05 1E-09 59.3 9.1 61 42-102 67-127 (585)
29 KOG0055|consensus 98.0 1.2E-05 2.6E-10 66.7 5.5 75 29-103 69-143 (1228)
30 COG2274 SunT ABC-type bacterio 98.0 5.9E-05 1.3E-09 60.2 9.1 66 35-101 198-263 (709)
31 PRK11176 lipid transporter ATP 98.0 6.1E-05 1.3E-09 58.3 8.9 66 37-102 71-136 (582)
32 TIGR03375 type_I_sec_LssB type 98.0 8.9E-05 1.9E-09 58.6 9.6 66 35-102 191-256 (694)
33 PRK13657 cyclic beta-1,2-gluca 97.8 0.00025 5.4E-09 55.1 9.8 69 34-102 59-127 (588)
34 TIGR00954 3a01203 Peroxysomal 97.5 0.00029 6.2E-09 55.8 6.0 67 35-102 143-209 (659)
35 COG4987 CydC ABC-type transpor 97.1 0.0031 6.7E-08 49.0 7.4 64 39-102 66-129 (573)
36 TIGR00957 MRP_assoc_pro multi 97.1 0.007 1.5E-07 52.2 10.1 64 39-102 366-429 (1522)
37 PLN03232 ABC transporter C fam 97.0 0.0066 1.4E-07 52.2 9.5 48 55-102 365-412 (1495)
38 TIGR01271 CFTR_protein cystic 97.0 0.0069 1.5E-07 52.1 9.1 65 38-102 129-193 (1490)
39 TIGR01842 type_I_sec_PrtD type 96.9 0.01 2.2E-07 45.9 9.1 66 32-102 47-112 (544)
40 COG4988 CydD ABC-type transpor 96.8 0.018 3.9E-07 45.0 9.7 72 31-102 40-111 (559)
41 PLN03130 ABC transporter C fam 96.6 0.019 4.1E-07 49.9 9.5 48 55-102 365-412 (1622)
42 COG4615 PvdE ABC-type sideroph 96.4 0.0057 1.2E-07 46.4 4.6 59 43-101 60-118 (546)
43 KOG0057|consensus 96.3 0.039 8.4E-07 43.2 8.3 69 33-101 76-144 (591)
44 PTZ00243 ABC transporter; Prov 95.8 0.094 2E-06 45.6 9.5 63 40-102 294-358 (1560)
45 KOG0054|consensus 93.3 0.49 1.1E-05 40.9 7.7 63 40-102 251-313 (1381)
46 KOG0056|consensus 79.6 0.36 7.8E-06 38.1 -1.1 56 45-100 273-328 (790)
47 KOG4050|consensus 79.0 17 0.00037 24.5 7.3 75 23-100 103-186 (188)
48 PF12426 DUF3674: RNA dependen 58.8 4.7 0.0001 20.7 0.6 24 1-28 13-37 (41)
49 COG4618 ArpD ABC-type protease 49.9 1.1E+02 0.0025 24.5 7.1 49 33-81 65-113 (580)
50 PF06472 ABC_membrane_2: ABC t 44.9 1.1E+02 0.0024 21.7 8.3 67 34-101 69-139 (281)
51 COG5265 ATM1 ABC-type transpor 43.3 18 0.0004 28.1 1.9 44 53-96 4-47 (497)
52 PF10808 DUF2542: Protein of u 32.7 1.1E+02 0.0023 17.9 4.0 30 15-46 41-70 (79)
53 KOG0060|consensus 30.2 2.9E+02 0.0062 22.7 6.6 44 33-76 124-167 (659)
54 PF15071 TMEM220: Transmembran 28.7 1.4E+02 0.0031 18.1 5.1 18 26-43 11-28 (104)
55 PF13974 YebO: YebO-like prote 25.7 1.4E+02 0.0031 17.6 3.3 20 46-65 9-28 (80)
56 PF10136 SpecificRecomb: Site- 21.5 4.3E+02 0.0092 21.7 6.3 23 60-82 619-641 (643)
No 1
>KOG0054|consensus
Probab=99.35 E-value=3.1e-12 Score=105.70 Aligned_cols=76 Identities=45% Similarity=0.609 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846 28 PDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR 103 (103)
Q Consensus 28 ~~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~ 103 (103)
.+..+|+++|.++++++.++..++.+++...+.++++.+|+++++++++.||+|||++|+|+++|||+.|++.+|+
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~ 930 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDV 930 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN03232 ABC transporter C family member; Provisional
Probab=98.95 E-value=5.3e-09 Score=88.16 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
...|+++|++++++..++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus 949 ~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id 1021 (1495)
T PLN03232 949 PGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDID 1021 (1495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999886
No 3
>PLN03130 ABC transporter C family member; Provisional
Probab=98.94 E-value=5.7e-09 Score=88.46 Aligned_cols=73 Identities=33% Similarity=0.519 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
...|+++|++++++..++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus 952 ~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id 1024 (1622)
T PLN03130 952 PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDID 1024 (1622)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHH
Confidence 4567888999988889899998898999999999999999999999999999999999999999999999886
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.93 E-value=6.6e-09 Score=87.71 Aligned_cols=74 Identities=31% Similarity=0.387 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846 30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR 103 (103)
Q Consensus 30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~ 103 (103)
...|+++|++++++..++.++..++....+.++.+++|.+++++++++|++||+++++|++++|+++|++.+++
T Consensus 1004 ~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~ 1077 (1522)
T TIGR00957 1004 TSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDS 1077 (1522)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHH
Confidence 45677889999888888888888888899999999999999999999999999999999999999999998863
No 5
>KOG0058|consensus
Probab=98.78 E-value=3.6e-08 Score=77.35 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
...++.++.++++++.+++..++...+.++..++|..+|+++++++++|||.+.+|++++|++.|+..+.
T Consensus 190 ~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs 259 (716)
T KOG0058|consen 190 ACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVS 259 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHH
Confidence 3456666778888899999999999999999999999999999999999999999999999999998764
No 6
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.70 E-value=1e-07 Score=80.58 Aligned_cols=69 Identities=26% Similarity=0.452 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+++|+++.++..++.++..+++...+.++++++|.++++++++.|+.||+++++|++++||++|++.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id 996 (1490)
T TIGR01271 928 FYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIID 996 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence 566666666666677788888889999999999999999999999999999999999999999999886
No 7
>PTZ00243 ABC transporter; Provisional
Probab=98.69 E-value=1.1e-07 Score=80.76 Aligned_cols=72 Identities=28% Similarity=0.425 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..|+++|+++.++..+..++..+.....+.+..+++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus 998 ~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id 1069 (1560)
T PTZ00243 998 ATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILD 1069 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHH
Confidence 456777777776666666666666667778888999999999999999999999999999999999999886
No 8
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.55 E-value=5.1e-07 Score=61.16 Aligned_cols=62 Identities=24% Similarity=0.470 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 41 IGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 41 ~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.++.........+...+.+.+...++|.++++++++.|.++|+++++|++++|+++|++.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~ 112 (275)
T PF00664_consen 51 FLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIE 112 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence 34444445555555678899999999999999999999999999999999999999999875
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.42 E-value=2.5e-06 Score=66.00 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++++++.++..++.++..++..+.+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~ 134 (588)
T PRK11174 65 PFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMH 134 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHH
Confidence 4445555666777888888888899999999999999999999999999999999999999999998875
No 10
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.40 E-value=2.3e-06 Score=66.32 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++.++.++..++.++..++..+.+.+...++|.+++++++++|..+|++.++|++++|+++|++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~ 131 (574)
T PRK11160 65 GVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLD 131 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHH
Confidence 3445556778888888888899999999999999999999999999999999999999999999875
No 11
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.40 E-value=2.9e-06 Score=64.93 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..+.++++++.++..++.++..+...+.+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~ 115 (529)
T TIGR02857 44 LPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALD 115 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHH
Confidence 344555666667778888899999999999999999999999999999999999999999999999998875
No 12
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.39 E-value=1.6e-06 Score=66.90 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++.++..++.++..++....+.+...++|.++++++++.|+.+|++.++|++++|+++|++.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~ 124 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQIN 124 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHH
Confidence 334455666778888888899999999999999999999999999999999999999999999875
No 13
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.36 E-value=4.3e-06 Score=64.73 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.++++++++.++..++.++..++....+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~ 107 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVV 107 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHH
Confidence 34455555556667777888888888999999999999999999999999999999999999999998764
No 14
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.35 E-value=4.5e-06 Score=63.86 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++..+..++..++....+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~ 124 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQ 124 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHH
Confidence 445666777888888888999999999999999999999999999999999999999999875
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.34 E-value=3.5e-06 Score=66.85 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+++++++.++..++.++...+..+.+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~ 272 (711)
T TIGR00958 204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMS 272 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHH
Confidence 344455556667777788888889999999999999999999999999999999999999999998875
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.32 E-value=4e-06 Score=71.09 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHh
Q psy846 32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~ 102 (103)
.|.+++++++++..++.++..++..+.+.+...++|.++|++++++|++||++ +++|++++|+++|++.+.
T Consensus 867 ~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~ 939 (1466)
T PTZ00265 867 KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLK 939 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455566667777788888899999999999999999999999999999986 889999999999998775
No 17
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.21 E-value=1.1e-05 Score=68.61 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
...+.+.++.++++..++.++..+++.+.+.+...++|.+++++++++|++|||+.+.|.+.++++.|++.+.
T Consensus 96 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~ 168 (1466)
T PTZ00265 96 VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVN 168 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3344455666677788889999999999999999999999999999999999999999999999999998764
No 18
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.19 E-value=1.5e-05 Score=61.76 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++.++..+..+...+.....+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~ 136 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIR 136 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence 444445666777888888889999999999999999999999999999999999999999998875
No 19
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.17 E-value=1.7e-05 Score=61.12 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.++.++++++.++..+..++..++..+.+.+....+|..+++++.+.|.+++++.+.|++++|+++|++.++
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~ 125 (571)
T TIGR02203 54 WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVA 125 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHH
Confidence 334456667777888888999999999999999999999999999999999999999999999999998775
No 20
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.17 E-value=1.6e-05 Score=62.91 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++++++.++..++.++..++....+.+...++|.+++++++++|+.+|++.++|++++|+ +|++.+.
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~ 249 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIR 249 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHH
Confidence 34445555667778888899999999999999999999999999999999999999999999 6888764
No 21
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.15 E-value=1.5e-05 Score=61.49 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 45 ILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 45 ~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.+..++..++..+.+.+...++|.++++++++.|+++|++.++|++++|+++|++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~ 119 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNIT 119 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHH
Confidence 4456677888888999999999999999999999999999999999999999998764
No 22
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.13 E-value=2.1e-05 Score=60.81 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+...++++.++..++.+...+...+.+.+...++|.++++++++.|+++|+++++|++++|+++|++.++
T Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~ 123 (567)
T COG1132 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVS 123 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHH
Confidence 3444455555667777777787888889999999999999999999999999999999999999998875
No 23
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.13 E-value=1.7e-05 Score=62.76 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++++.++..++.++..++..+.+.+...++|.++++++++.|+.+|++.++|++++|++ |.+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~ 266 (708)
T TIGR01193 200 IGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSII 266 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHH
Confidence 3444455667778888888889999999999999999999999999999999999999998 676653
No 24
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.11 E-value=2.2e-05 Score=61.95 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++++++.++..++.++..+.....+.+...++|.+++++++++|+.||++.++|++++|+. |++.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~ 246 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIR 246 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHH
Confidence 344555566677888888889999999999999999999999999999999999999999997 566654
No 25
>KOG0055|consensus
Probab=98.09 E-value=2.9e-05 Score=64.53 Aligned_cols=70 Identities=16% Similarity=0.375 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHh
Q psy846 32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~ 102 (103)
.|..+|+++++...+..+++.+++...+.+...++|..+|+++++.+++|||. +. |.+.+|+.+|...+.
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr 779 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVR 779 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHH
Confidence 47788899999999999999999999999999999999999999999999965 55 999999999987664
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.03 E-value=4.6e-05 Score=58.85 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+..+++++.++..+..++..+...+.+.+....+|..+++++++.|..+|++.+.|++++|+++|++.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~ 129 (576)
T TIGR02204 60 YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQ 129 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHH
Confidence 3444555555666777788888889999999999999999999999999999999999999999998875
No 27
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.03 E-value=3.8e-05 Score=60.84 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846 34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101 (103)
Q Consensus 34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I 101 (103)
.++++++.++..++.++..++....+.+...+++.++++++++.|+++|++.++|++++|++.| +.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i 263 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQV 263 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHH
Confidence 3444555566777888888899999999999999999999999999999999999999999888 444
No 28
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.02 E-value=4.7e-05 Score=59.27 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 42 GIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 42 ~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++..+..+...........+...++|.+++++++++|+++|+++++|++++|+++|++.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~ 127 (585)
T TIGR01192 67 VFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLF 127 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence 3444444454555556666666777789999999999999999999999999999988764
No 29
>KOG0055|consensus
Probab=98.00 E-value=1.2e-05 Score=66.71 Aligned_cols=75 Identities=7% Similarity=0.203 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846 29 DFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR 103 (103)
Q Consensus 29 ~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~ 103 (103)
...-+...|..+++...+..+++..++...+.|...++|.+.++.+++.+++|||++.+|++..++++|++.+.+
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d 143 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQD 143 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHH
Confidence 444556667777778888889999999999999999999999999999999999999999999999999988753
No 30
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=5.9e-05 Score=60.17 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846 35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101 (103)
Q Consensus 35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I 101 (103)
.+++..++.+.+...++.+.....+.+...++-.++++|++++|+.||+++++|++++|+.. ++.|
T Consensus 198 ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e-l~~I 263 (709)
T COG2274 198 IGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE-LEQI 263 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH-HHHH
Confidence 44555667888889999999999999999999999999999999999999999999999875 4444
No 31
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.98 E-value=6.1e-05 Score=58.27 Aligned_cols=66 Identities=26% Similarity=0.339 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++.++..++.++..++..+.+.+...++|..+++++.+.|..+|++.+.|++++|+++|++.+.
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~ 136 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVA 136 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHH
Confidence 344556677777888888889999999999999999999999999999999999999999998765
No 32
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.95 E-value=8.9e-05 Score=58.63 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++++.++..++.++..++..+.+.+...++|..++++++++|+.| ++.++|++++|+ +|++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~ 256 (694)
T TIGR03375 191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVR 256 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHH
Confidence 33444455677788888899999999999999999999999999998 789999999999 7888765
No 33
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.81 E-value=0.00025 Score=55.12 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+++++++.++..+..+.......+...+....++.++++++++.|..+|++.+.|++++|+++|++.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~ 127 (588)
T PRK13657 59 LAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALF 127 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHH
Confidence 334444444444444444445555666666677779999999999999999999999999999988663
No 34
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.49 E-value=0.00029 Score=55.78 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++++.++..+..+....+......+....+|...+++....++.+||+ ++|++++|+++|++.+.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~ 209 (659)
T TIGR00954 143 LIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFC 209 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHH
Confidence 33444555666667777777788888999999999999988889999986 88999999999998875
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0031 Score=48.97 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 39 STIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 39 ~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++.+.+.-|+.++.......++..++|.++|+++...+..-..+.++|++++|+..|++.++
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld 129 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALD 129 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHh
Confidence 4567777788888888888889999999999999999999999999999999999999999886
No 36
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.06 E-value=0.007 Score=52.15 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 39 STIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 39 ~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++.++..++.....+...+.+.++-..++..+|+++++++...+++..+|+++++++.|++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~ 429 (1522)
T TIGR00957 366 VCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFM 429 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHH
Confidence 3334455554445556678899999999999999999999999999999999999999998764
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=97.00 E-value=0.0066 Score=52.19 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 55 FTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 55 ~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..+.+.+....++..+|++.++.+..++++..+|+++++++.|++.++
T Consensus 365 ~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~ 412 (1495)
T PLN03232 365 VGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQ 412 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 357788888888889999999999999999999999999999999875
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.95 E-value=0.0069 Score=52.10 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 38 ASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 38 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.++.++..++.....+.....+.+.-..+...+|+++++++...+++.++|+++++++.|++.++
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~ 193 (1490)
T TIGR01271 129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFD 193 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHH
Confidence 33344555555555566667788888888888899999999999999999999999999998875
No 39
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.91 E-value=0.01 Score=45.89 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.++++++++.++..++.++..++..+.+.+...++|.++++++++.|... .+...+++.+|++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~ 112 (544)
T TIGR01842 47 MLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLR 112 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHH
Confidence 34455555666777888888889999999999999999999999999843 3567888899988775
No 40
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.018 Score=45.03 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..++++++++.+++.++.+.........+..+-.++|+.+++++.+.+..+...+++|+....+...++.++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~ 111 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLE 111 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHH
Confidence 445566667778889999999898999999999999999999999999999999999999999999888764
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=96.64 E-value=0.019 Score=49.90 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 55 FTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 55 ~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..+.+.+.-..++..+|++.++++...+++.++|+++++++.|++.++
T Consensus 365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~ 412 (1622)
T PLN03130 365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQ 412 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 346778888888889999999999999999999999999999999875
No 42
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0057 Score=46.45 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846 43 IIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101 (103)
Q Consensus 43 ~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I 101 (103)
+-.+...+........+.+...++|.++.++++..|+..+++.++++++.++++|+..|
T Consensus 60 lf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~I 118 (546)
T COG4615 60 LFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNI 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccce
Confidence 33444455666677889999999999999999999999999999999999999998765
No 43
>KOG0057|consensus
Probab=96.26 E-value=0.039 Score=43.21 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I 101 (103)
-+..|+...+...++..++...+.++..+..++.-.++|.+.+.+++++|.+..+|.+.+.+..-...|
T Consensus 76 ~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI 144 (591)
T KOG0057|consen 76 LLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAI 144 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHH
Confidence 456777788888999999999999999999999999999999999999999999999988887665544
No 44
>PTZ00243 ABC transporter; Provisional
Probab=95.83 E-value=0.094 Score=45.61 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHh
Q psy846 40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFE--ETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~--~~~~G~llsr~s~D~~~I~ 102 (103)
+.+++.++.....+...+.+.+.-..+...+|+++++++...+. +..+|+++|.++.|++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~ 358 (1560)
T PTZ00243 294 TQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERIN 358 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHH
Confidence 33455555555666677888888888999999999999887775 5688999999999999875
No 45
>KOG0054|consensus
Probab=93.35 E-value=0.49 Score=40.94 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..+++.++.....+...+.+.+.-..+-..+|++.++++-.--..+.+|+++|-++.|++.++
T Consensus 251 ~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~ 313 (1381)
T KOG0054|consen 251 ASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLS 313 (1381)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHH
Confidence 335556555555556667777777778888899999999888888899999999999999875
No 46
>KOG0056|consensus
Probab=79.62 E-value=0.36 Score=38.07 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHH
Q psy846 45 ILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFE 100 (103)
Q Consensus 45 ~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~ 100 (103)
++..-++++++..+..-..+++..++|+|++.+++.|+-++++|+++.-+...+.+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtss 328 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSS 328 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcch
Confidence 34445566677778888899999999999999999999999999998776655443
No 47
>KOG4050|consensus
Probab=78.96 E-value=17 Score=24.46 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred CCCCCCchHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHcCCcccccccChhHHHHH
Q psy846 23 HINANPDFYMY----QTVYASTIGIIILTSLLRSFIFT--KVALKASHTLH---AVLFKKMLYSPLSFFEETPSGRIQNY 93 (103)
Q Consensus 23 ~~~~~~~~~~~----l~i~~~l~~~~~v~~~~~~~~~~--~~~~~~~~~lr---~~l~~~il~~~l~ff~~~~~G~llsr 93 (103)
+++.+.+..+. ++.|..+.+.++++.++...++- .+-.+++.++| +++-+++-...+ .++|.|.++.+
T Consensus 103 rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRnikNkleN~iEsigl---krTpMG~lLda 179 (188)
T KOG4050|consen 103 RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRNIKNKLENKIESIGL---KRTPMGQLLDA 179 (188)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc---CCCcHHHHHHH
Confidence 44444444332 34566666777777766555442 22334444443 444444443332 45899999999
Q ss_pred HHhhHHH
Q psy846 94 FTKDMFE 100 (103)
Q Consensus 94 ~s~D~~~ 100 (103)
+....+.
T Consensus 180 l~~~~e~ 186 (188)
T KOG4050|consen 180 LGQNVEG 186 (188)
T ss_pred hcchhcc
Confidence 8776543
No 48
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=58.77 E-value=4.7 Score=20.65 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=14.2
Q ss_pred CCcc-CCCcccccCccceeeeccCCCCCC
Q psy846 1 MFNL-FQNITEVQGNETVTYYSDHINANP 28 (103)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 28 (103)
|||| |-....+. .+ |+.++.+..+
T Consensus 13 MFNLKFhi~~~k~--~~--y~IP~Y~~~~ 37 (41)
T PF12426_consen 13 MFNLKFHIGGPKT--QP--YYIPDYRGIP 37 (41)
T ss_pred HhceeeeeCCccc--cc--ccCCCCCCcc
Confidence 7887 44444444 33 7777776544
No 49
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=49.95 E-value=1.1e+02 Score=24.49 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSF 81 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~f 81 (103)
..++.+++.++++++.+++.....+++.+....+..++|...++.+..-
T Consensus 65 Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~ 113 (580)
T COG4618 65 LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR 113 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh
Confidence 3344455667778888899999999999999999999999887666554
No 50
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=44.92 E-value=1.1e+02 Score=21.70 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc----ChhHHHHHHHhhHHHH
Q psy846 34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEET----PSGRIQNYFTKDMFEV 101 (103)
Q Consensus 34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~----~~G~llsr~s~D~~~I 101 (103)
++.++++++...+......++......+--..+-..+.++.+.-. .||.-. +....=-|+++|++..
T Consensus 69 l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f 139 (281)
T PF06472_consen 69 LLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKF 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHH
Confidence 455556666666655555555555555544555555555555544 444322 2234445788887654
No 51
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=43.29 E-value=18 Score=28.13 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHh
Q psy846 53 FIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTK 96 (103)
Q Consensus 53 ~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~ 96 (103)
.++...+..+.+.+--+.|.|++.+++.|+-+..+|.+......
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ier 47 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIER 47 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhc
Confidence 34667788888888889999999999999999999887655443
No 52
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=32.66 E-value=1.1e+02 Score=17.92 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=21.7
Q ss_pred cceeeeccCCCCCCchHHHHHHHHHHHHHHHH
Q psy846 15 ETVTYYSDHINANPDFYMYQTVYASTIGIIIL 46 (103)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~i~~~l~~~~~v 46 (103)
|| -|-.+-++..+.+-|+.+|++++++...
T Consensus 41 eP--vyi~R~~~P~~ywsYi~~Y~G~gil~~g 70 (79)
T PF10808_consen 41 EP--VYIYRAKNPGQYWSYIFAYFGCGILSLG 70 (79)
T ss_pred Cc--EEEEecCCcchhHHHHHHHHHHHHHHHH
Confidence 56 4556677777778889999988766544
No 53
>KOG0060|consensus
Probab=30.19 E-value=2.9e+02 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLY 76 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~ 76 (103)
.+..|+++..+.+.......+..+-...+.-..+-.-+.++.++
T Consensus 124 ~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k 167 (659)
T KOG0060|consen 124 LLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFK 167 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhc
Confidence 33444444333333333444433333343334444444444433
No 54
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=28.71 E-value=1.4e+02 Score=18.14 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=13.3
Q ss_pred CCCchHHHHHHHHHHHHH
Q psy846 26 ANPDFYMYQTVYASTIGI 43 (103)
Q Consensus 26 ~~~~~~~~l~i~~~l~~~ 43 (103)
+|||...|+.+|+..+++
T Consensus 11 NDPD~~lWv~iY~i~a~~ 28 (104)
T PF15071_consen 11 NDPDPELWVPIYGIAAVL 28 (104)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 566788899999766555
No 55
>PF13974 YebO: YebO-like protein
Probab=25.69 E-value=1.4e+02 Score=17.56 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy846 46 LTSLLRSFIFTKVALKASHT 65 (103)
Q Consensus 46 v~~~~~~~~~~~~~~~~~~~ 65 (103)
+..++-+++.++.+.|+...
T Consensus 9 lv~livWFFVnRaSvRANEQ 28 (80)
T PF13974_consen 9 LVGLIVWFFVNRASVRANEQ 28 (80)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 33344445556666665543
No 56
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=21.50 E-value=4.3e+02 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcccc
Q psy846 60 LKASHTLHAVLFKKMLYSPLSFF 82 (103)
Q Consensus 60 ~~~~~~lr~~l~~~il~~~l~ff 82 (103)
...-+.+...+.++..+.|.+||
T Consensus 619 ~~~~~~l~~~v~~~~~~~P~~Ff 641 (643)
T PF10136_consen 619 FSDWRRLLRAVWRRFRRRPLSFF 641 (643)
T ss_pred hhhHHHHHHHHHHHHHhCchhhc
Confidence 44456777888888999999887
Done!