Query psy846
Match_columns 103
No_of_seqs 118 out of 1110
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:27:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 98.9 1.7E-08 5.9E-13 83.1 11.7 76 28-103 791-868 (1321)
2 4f4c_A Multidrug resistance pr 98.8 9E-09 3.1E-13 84.7 8.0 71 32-102 137-207 (1321)
3 3g5u_A MCG1178, multidrug resi 98.8 1.3E-08 4.6E-13 83.5 8.9 72 31-102 108-179 (1284)
4 3qf4_B Uncharacterized ABC tra 98.7 9.2E-08 3.2E-12 73.2 9.2 73 30-102 76-148 (598)
5 3qf4_A ABC transporter, ATP-bi 98.6 2.9E-07 9.8E-12 70.4 8.9 70 33-102 65-134 (587)
6 4a82_A Cystic fibrosis transme 98.5 3E-07 1E-11 70.1 8.3 68 35-102 65-132 (578)
7 3b5x_A Lipid A export ATP-bind 98.5 6.4E-07 2.2E-11 68.3 9.3 67 36-102 70-136 (582)
8 2yl4_A ATP-binding cassette SU 98.5 8.1E-07 2.8E-11 67.9 9.4 70 33-102 64-133 (595)
9 3b60_A Lipid A export ATP-bind 98.5 8.6E-07 3E-11 67.5 9.4 67 36-102 70-136 (582)
10 3g5u_A MCG1178, multidrug resi 98.5 9.6E-07 3.3E-11 72.7 9.8 72 31-102 749-822 (1284)
11 2p06_A Hypothetical protein AF 24.3 1.1E+02 0.0037 17.5 3.8 50 52-102 21-73 (114)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.89 E-value=1.7e-08 Score=83.08 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=69.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHhC
Q psy846 28 PDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVYR 103 (103)
Q Consensus 28 ~~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~~ 103 (103)
.+..+|.++|++++++..++.++..++....+.+...++|.+++++++++|++|||. +++|++++|+++|++.+++
T Consensus 791 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~ 868 (1321)
T 4f4c_A 791 SQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRT 868 (1321)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHH
Confidence 345677888899999999999999999999999999999999999999999999986 7899999999999998863
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.82 E-value=9e-09 Score=84.74 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.+.+.+++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||++++|++++|+++|++.++
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~ 207 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVK 207 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHH
Confidence 34566677778888899999999999999999999999999999999999999999999999999998875
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.82 E-value=1.3e-08 Score=83.52 Aligned_cols=72 Identities=13% Similarity=0.309 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
..+.++|++++++..++.++..+++.+.+.+...++|.++|++++++|++||+++++|++++|+++|++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~ 179 (1284)
T 3g5u_A 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKIN 179 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999999999999999999999999999999999999999998875
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.69 E-value=9.2e-08 Score=73.18 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
...++++++++.++..++.++..++....+.+...++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~ 148 (598)
T 3qf4_B 76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNIN 148 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455667777778888889999999999999999999999999999999999999999999999999998875
No 5
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.57 E-value=2.9e-07 Score=70.37 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++++++.++..++.++..++..+.+.+...++|.++++++++.|+.+|+++++|++++|+++|++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~ 134 (587)
T 3qf4_A 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQ 134 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3445555666777778888888899999999999999999999999999999999999999999998875
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.54 E-value=3e-07 Score=70.08 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
++++++.++..++.++..++..+.+.+...++|.+++++++++|++||++.++|++++|+++|++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~ 132 (578)
T 4a82_A 65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132 (578)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHH
Confidence 34445566777788888899999999999999999999999999999999999999999999998764
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.50 E-value=6.4e-07 Score=68.27 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+++++.++..++.++..++..+.+.+...++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~ 136 (582)
T 3b5x_A 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVA 136 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 3556667788888888888999999999999999999999999999999999999999999998875
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.48 E-value=8.1e-07 Score=67.86 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+.++++++.++..++.++..++..+.+.+...++|.++++++++.|++||+++++|++++|+++|++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~ 133 (595)
T 2yl4_A 64 LCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLG 133 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHH
Confidence 3444555666777778888888889999999999999999999999999999999999999999998875
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.48 E-value=8.6e-07 Score=67.54 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846 36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
+++++.++..++.++..+...+.+.+...++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~ 136 (582)
T 3b60_A 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHH
Confidence 3556667778888888888999999999999999999999999999999999999999999998875
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.46 E-value=9.6e-07 Score=72.68 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHh
Q psy846 31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFE--ETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~--~~~~G~llsr~s~D~~~I~ 102 (103)
..|.++|++++++..+..++..+++.+.+.+...++|.++++++++.|++||+ ++++|++++|+++|++.++
T Consensus 749 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~ 822 (1284)
T 3g5u_A 749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVK 822 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45667777888888888888999999999999999999999999999999998 5899999999999998775
No 11
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=24.28 E-value=1.1e+02 Score=17.50 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---CCcccccccChhHHHHHHHhhHHHHh
Q psy846 52 SFIFTKVALKASHTLHAVLFKKMLY---SPLSFFEETPSGRIQNYFTKDMFEVY 102 (103)
Q Consensus 52 ~~~~~~~~~~~~~~lr~~l~~~il~---~~l~ff~~~~~G~llsr~s~D~~~I~ 102 (103)
.+-+.+.+.+..+.++.+.+.++-+ .|-.||| -+-.++++|+-..++.+.
T Consensus 21 gmdyfrlaekflremhakymkrvsrpgntprpwfd-fseerllsrlfeemdelr 73 (114)
T 2p06_A 21 GMDYFRLAEKFLREMHAKYMKRVSRPGNTPRPWFD-FSEERLLSRLFEEMDELR 73 (114)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTSTTCCSCHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHccCCCCCCCCccc-ccHHHHHHHHHHHHHHHH
Confidence 3334566778888888888887744 4556776 455788888877776653
Done!