RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy846
(103 letters)
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 46.0 bits (110), Expect = 3e-07
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 22 DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
D D + + IG++IL + + S+ + V+ K T+ LF M+ P
Sbjct: 53 DDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMP 112
Query: 79 LSFFEETPSGRIQNYFTKDMFEV 101
++FF++ +G + + T D +V
Sbjct: 113 VAFFDKQSTGTLLSRITYDSEQV 135
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 45.3 bits (108), Expect = 4e-07
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 22 DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
D N + + + +G++ + L S+ + V+ + LF ++ P
Sbjct: 53 DEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMP 112
Query: 79 LSFFEETPSGRIQNYFTKDMFEV 101
+ FF++ +G + + T D +V
Sbjct: 113 VRFFDQESTGGLLSRITYDSEQV 135
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.4 bits (98), Expect = 1e-05
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 22 DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
D + F + I LTSL L+ I ++ L LF+K+ P
Sbjct: 65 DVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVP 124
Query: 79 LSFFEETPSGRIQNYFTKDM 98
+ FF+ TP G I + D+
Sbjct: 125 VGFFDRTPHGDIISRVINDV 144
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 36.4 bits (85), Expect = 6e-04
Identities = 7/83 (8%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 22 DHINANPDFYMYQTVYASTIGIIILTSLL---RSFIFTKVALKASHTLHAVLFKKMLYSP 78
++ + + +I+ + R ++ + K + + L+ +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 79 LSFFEETPSGRIQNYFTKDMFEV 101
F+ G++ + D+ +
Sbjct: 109 ARFYANNQVGQVISRVINDVEQT 131
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 36.0 bits (84), Expect = 0.001
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 22 DHINANPDFYMYQTVYASTIGIIIL------TSLLRSFIFTKVALKASHTLHAVLFKKML 75
D I NP + +G+ + + +R ++ + + L LF +L
Sbjct: 47 DVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSIL 106
Query: 76 YSPLSFFEETPSGRIQNYFTKDMFEV 101
++FF++T +G + N + D +
Sbjct: 107 RQEVAFFDKTRTGELINRLSSDTALL 132
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 31.5 bits (72), Expect = 0.036
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 41 IGIII-LTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFF--EETPSGRIQNYFTKD 97
+GII +T L+ F F K + L ++FK ML +S+F + +G + D
Sbjct: 758 LGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLAND 817
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.11
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 57 KVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQ 91
K ALK L A L K LY+ + P+ I+
Sbjct: 19 KQALK---KLQASL--K-LYAD----DSAPALAIK 43
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 6 QNITEVQGNETVTYYSDHINANPDFYMYQT 35
+ E YYS + D YMY
Sbjct: 299 REFYEFDSQGNPVYYSPYDGNVHDGYMYTD 328
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta
barrel, bacterial microcompartmen propanediol,
signaling protein; 1.80A {Salmonella typhimurium}
Length = 124
Score = 25.3 bits (55), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 23 HINANPDFYMYQTV----YASTIGIIILTSLLRSFIFTKVALKASHT 65
H+ ANP +++ + S IGI+ +T S I +A K+
Sbjct: 24 HLIANPGKDLFKKLGLQDAVSAIGILTITPSEASIIACDIATKSGAV 70
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Length = 345
Score = 25.1 bits (56), Expect = 4.7
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 24 INANPDFYMYQTVYASTIG 42
I A YQTVYA G
Sbjct: 160 IKAKIPMERYQTVYARRPG 178
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct
genomics, JCSG, protein structure initiative, PSI; 2.00A
{Thermotoga maritima} SCOP: e.53.1.1
Length = 347
Score = 24.7 bits (55), Expect = 6.6
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 24 INANPDFYMYQTVYASTIG 42
I YQTVYA G
Sbjct: 162 IKNEVPLERYQTVYAKEEG 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.396
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,512,088
Number of extensions: 72624
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 17
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)