BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8460
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 8 MYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 67
+Y +S++ P+DE E E R+MD ++DGK+S ++F + +P ++
Sbjct: 128 IYKMVSSVMKMPEDESTPE---KRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL- 183
Query: 68 QCLPSDAAR 76
QC PS A +
Sbjct: 184 QCDPSSAGQ 192
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 15 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISF 49
L+ H + PDE VR +EL + K++ + KI+F
Sbjct: 205 LVLHGASDVPDEFVRRTIELGVTKVNVATELKIAF 239
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 28 VRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 70
++ L++ L + D D+DG I+ +FQ ++ P +F L
Sbjct: 172 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL 214
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 8 MYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEA 65
+Y + + P++E+ E D + MD + DGK++ Q+FQ+ +P +++A
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRI---FAMMDKNADGKLTLQEFQEGSKADPSIVQA 182
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 28 VRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 70
++ L++ L + D D+DG I+ +FQ ++ P +F L
Sbjct: 141 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL 183
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 32 VELALRKMDYDKDGKISFQDFQQS 55
E +++D D+DG I+FQ+F +
Sbjct: 63 AEAVFQRLDADRDGAITFQEFARG 86
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 26 EGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLL 63
+ V + V+ L+++D+DK+G I + +F D+ +L
Sbjct: 395 KNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILF 432
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG+++++DF Q +T
Sbjct: 45 VDEMIREADIDGDGQVNYEDFVQMMT 70
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
DE+ DE +R+ D D DG++++++F Q +T
Sbjct: 410 DEEVDEMIRE--------ADIDGDGQVNYEEFVQMMT 438
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPLLL 63
V+ L+ +D+D++G I + +F D+ LLL
Sbjct: 363 VDHILQSVDFDRNGYIEYSEFVTVCMDKQLLL 394
>pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Complex With Annexin
I N-Terminus
Length = 99
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 4 KRSLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
K + L + Q++ D GV D + ++K+D D DG++ FQ+F
Sbjct: 34 KTEFLIFMNTELAAFTQNQ-KDPGVLDRM---MKKLDLDSDGQLDFQEF 78
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 70
+ + K+D + DG++S ++F + V + +LL+ + L
Sbjct: 131 EFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSL 171
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 423 VDEMIREADIDGDGQVNYEEFVQMMT 448
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 388 VDEMIREADIDGDGQVNYEEFVQMMT 413
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPLLL 63
V+ L+ +D+D++G I + +F D+ LLL
Sbjct: 89 VDHILQSVDFDRNGYIEYSEFVTVCMDKQLLL 120
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 421 VDEMIREADIDGDGQVNYEEFVQMMT 446
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 421 VDEMIREADIDGDGQVNYEEFVQMMT 446
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 421 VDEMIREADIDGDGQVNYEEFVQMMT 446
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQMMT 447
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 385 VDEMIREADIDGDGQVNYEEFVQMMT 410
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q +T
Sbjct: 388 VDEMIREADIDGDGQVNYEEFVQMMT 413
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ +R+ D D DG++++++F Q T
Sbjct: 121 VDEXIREADIDGDGQVNYEEFVQXXT 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,412,919
Number of Sequences: 62578
Number of extensions: 85939
Number of successful extensions: 532
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 90
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)