RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8460
(86 letters)
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 53.2 bits (128), Expect = 2e-10
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 16 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLP 71
I + + + K+D + DG++S ++F + V + +LL+ + L
Sbjct: 117 IRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLD 172
Score = 24.0 bits (52), Expect = 8.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 31 LVELALRKMDYDKDGKISFQDF 52
VE D++KDG I F ++
Sbjct: 53 YVEQMFETFDFNKDGYIDFMEY 74
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 52.6 bits (126), Expect = 5e-10
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + ++ R VE +KMD +KDG ++ +F +S + ++ +
Sbjct: 169 DMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSM 222
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 52.2 bits (125), Expect = 5e-10
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 8 MYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 67
+Y +S++ P+DE E E R+MD ++DGK+S ++F + +P ++
Sbjct: 128 IYKMVSSVMKMPEDESTPE---KRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL- 183
Query: 68 QCLPSDAA 75
QC PS A
Sbjct: 184 QCDPSSAG 191
Score = 23.6 bits (51), Expect = 9.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
P E R D + DG I F++F
Sbjct: 57 PYGDASKFAEHVFRTFDANGDGTIDFREF 85
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 52.3 bits (125), Expect = 6e-10
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + + ++ R V++ +KMD +KDG ++ +F +S ++ ++ +
Sbjct: 156 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSL 209
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 51.7 bits (124), Expect = 8e-10
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+L+ + ++ + +V+ A + D DGKI +++ V+ P L++
Sbjct: 138 VALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKNM 191
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 50.6 bits (121), Expect = 2e-09
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
++ L++ L + D D+DG I+ +FQ ++ P +F
Sbjct: 156 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSF 210
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 49.8 bits (119), Expect = 3e-09
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ ++ R V++ +KMD +KDG ++ +F +S ++ ++ +
Sbjct: 127 KYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSL 176
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 50.0 bits (119), Expect = 3e-09
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 8 MYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFG 67
+ D + E + + D K++ ++F + +L
Sbjct: 135 AIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLI- 193
Query: 68 QCLPSDAARQ 77
Q P +
Sbjct: 194 QFEPQKVKEK 203
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 49.8 bits (119), Expect = 4e-09
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
++ L++ L + D D+DG I+ +FQ ++ P +F
Sbjct: 125 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSF 179
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 49.4 bits (118), Expect = 6e-09
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ ++ D + D+++ + D DGKI ++++ V P LL+
Sbjct: 149 VATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 202
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 49.0 bits (117), Expect = 6e-09
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ S + + ++ V MD +KDG+++ ++F + +P ++ A
Sbjct: 130 KMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSAL 183
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 49.1 bits (117), Expect = 7e-09
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
S + + V+ + MD ++DG I+ +F++ +P ++ A
Sbjct: 134 SMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGAL 183
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 49.1 bits (117), Expect = 8e-09
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + + + V+ MD + DGK++ Q+FQ+ +P +++A
Sbjct: 134 NTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQAL 183
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 49.3 bits (117), Expect = 9e-09
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + H ++ + VE +KMD ++DG ++ +F ++ + ++ +
Sbjct: 196 DMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSM 249
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 47.1 bits (112), Expect = 4e-08
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 22 EDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSFLS 81
+ + L K+D + DG+++ ++F + + LLE + + +
Sbjct: 127 GQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICN 186
Score = 24.8 bits (54), Expect = 3.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
++ ++ D +KDG + F +F
Sbjct: 51 LNQKANKHIDQVYNTFDTNKDGFVDFLEF 79
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 45.6 bits (108), Expect = 1e-07
Identities = 8/64 (12%), Positives = 24/64 (37%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
S+ + + ++V+ +D + DG++S +F + + +++
Sbjct: 125 YKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKML 184
Query: 67 GQCL 70
L
Sbjct: 185 QMDL 188
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 37.4 bits (87), Expect = 1e-04
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 62
DE + + + +++ D D D ISF +F + + +
Sbjct: 149 DEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVE 186
Score = 25.1 bits (55), Expect = 2.8
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
+P + + A R D DKD KIS + Q +
Sbjct: 101 DVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR 140
Score = 23.6 bits (51), Expect = 9.6
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
P+ + L + + + + +++F+ F
Sbjct: 55 PELAINPLGDRIINAFFSEGEDQVNFRGF 83
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 34.7 bits (80), Expect = 0.001
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
+E + ++ + +++ D D DG +SF +F +S+
Sbjct: 150 EEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182
Score = 23.9 bits (52), Expect = 7.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 40 DYDKDGKISFQDFQQSVT 57
D D+DGKIS + Q +
Sbjct: 124 DLDRDGKISRHEMLQVLR 141
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.0 bits (75), Expect = 0.003
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSV 56
+E + E ++ +D ++D ++ ++F S
Sbjct: 67 EEERLRMREHVMKNVDTNQDRLVTLEEFLAST 98
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 32.7 bits (75), Expect = 0.006
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSD 73
+ P + + + A K+D DG ++ D + + G+ D
Sbjct: 97 RALRPPMSQAREAVIAA----AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWT-ED 151
Query: 74 AARQSFLST 82
+ FL
Sbjct: 152 EVLRRFLDN 160
Score = 28.5 bits (64), Expect = 0.21
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 26 EGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLP 71
G++ L R++D D + +F+Q L G L
Sbjct: 34 SGIQGLAR-FFRQLDRDGSRSLDADEFRQG-------LAKLGLVLD 71
Score = 25.0 bits (55), Expect = 3.5
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 32 VELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
E RK D + G + ++F S E ++ AF
Sbjct: 75 AEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAF 115
Score = 23.5 bits (51), Expect = 9.8
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 42 DKDGKISFQDFQQ 54
+KDG+++ +FQ
Sbjct: 165 EKDGQVTLAEFQD 177
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 32.3 bits (73), Expect = 0.007
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSV 56
S ++ + ++++ LR D + DG I + +F +S+
Sbjct: 103 SEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 32.2 bits (74), Expect = 0.007
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
D ++ +V+ + D D DG+ISF++F V
Sbjct: 111 DTQLQQIVDKTIINADKDGDGRISFEEFCAVVG 143
Score = 24.1 bits (53), Expect = 5.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 37 RKMDYDKDGKISFQDFQQ--SVTDEPLL 62
+K+D D G +S ++F + PL+
Sbjct: 13 KKLDLDNSGSLSVEEFMSLPELQQNPLV 40
Score = 23.7 bits (52), Expect = 9.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D ++ +R A R D DKDG IS + Q
Sbjct: 69 VKGDKEQKLRF----AFRIYDMDKDGYISNGELFQ 99
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 31.6 bits (72), Expect = 0.016
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 29 RDLVELALRKMDYDKDGKISFQDFQQSVTD 58
+ + + +D + DG +S ++F + +D
Sbjct: 127 KTMAPASFDAIDTNNDGLLSLEEFVIAGSD 156
Score = 31.6 bits (72), Expect = 0.016
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSF 79
++ + V + L R +D ++D IS ++ G L A SF
Sbjct: 84 KNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI-------FFGMLG--LDKTMAPASF 134
Score = 25.8 bits (57), Expect = 1.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
++D+DKDG I+ DF+
Sbjct: 13 NRIDFDKDGAITRMDFES 30
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 31.2 bits (71), Expect = 0.017
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSF 79
+ + +D DKDG +S +F+ L+A G L D A F
Sbjct: 93 KGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKA-------FLQAVGPDLTDDKAITCF 144
Score = 29.7 bits (67), Expect = 0.068
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTD 58
D +D++K+G+IS +F +V D
Sbjct: 138 DKAITCFNTLDFNKNGQISRDEFLVTVND 166
Score = 28.6 bits (64), Expect = 0.18
Identities = 7/73 (9%), Positives = 21/73 (28%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + E R ++ +IS ++ + TD L ++
Sbjct: 36 YELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGE 95
Query: 67 GQCLPSDAARQSF 79
+ + + +
Sbjct: 96 EKAMAVIQSLIMY 108
Score = 25.1 bits (55), Expect = 3.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
+++D DG IS +D++
Sbjct: 21 QRVDVTGDGFISREDYEL 38
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 31.6 bits (71), Expect = 0.018
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSD 73
L + + P + + + ++ D +KDG++ D + + + L F S
Sbjct: 132 DLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQ 191
Query: 74 AARQ 77
R+
Sbjct: 192 VERK 195
Score = 30.4 bits (68), Expect = 0.038
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
++ + + E L D +KDGKI +
Sbjct: 224 DMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELAL 264
Score = 29.6 bits (66), Expect = 0.083
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 19 PQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
P+D+ DE V+ + + + D DG++ ++
Sbjct: 46 PKDKITDERVQQIKKSFMSAYDATFDGRLQIEEL 79
Score = 27.0 bits (59), Expect = 0.78
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 6 SLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
+++ + + + E P + + ++ RK D D G IS + + + D
Sbjct: 81 NMILPQEENFLLIFRREAPLDNSVEFMK-IWRKYDADSSGYISAAELKNFLKD 132
Score = 24.3 bits (52), Expect = 5.8
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
++ L N L+ D + E D + G + + V D
Sbjct: 173 ILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD 224
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 31.3 bits (71), Expect = 0.020
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + R D D+ + F ++ +L +
Sbjct: 223 SVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILY 259
Score = 29.8 bits (67), Expect = 0.082
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
++ ++ D G++S+ D L+ F
Sbjct: 160 LKKLFVMVENDTKGRMSYITLVAVANDLAALVADF 194
Score = 28.2 bits (63), Expect = 0.29
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ L E + +D D +S+Q+F
Sbjct: 276 QKVLEDAHIPESARKKFEHQ----FSVVDVDDSKSLSYQEFVM 314
Score = 25.5 bits (56), Expect = 2.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 35 ALRKMDYDKDGKISFQDFQQ 54
GK SFQD +Q
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQ 146
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 31.2 bits (71), Expect = 0.022
Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D + +++ + +D + DG + F++F +
Sbjct: 454 LDHLESKTWKEM----ISGIDSNNDGDVDFEEFCK 484
Score = 27.4 bits (61), Expect = 0.55
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
R +D + DG++ Q+
Sbjct: 353 RHIDKNGDGQLDRQELID 370
Score = 26.2 bits (58), Expect = 1.5
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 4 KRSLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVT 57
L + + E V ++ D+D++G I + +F ++S+
Sbjct: 369 IDGYSKLSGEEVAVFDLPQIESE-VDAILG----AADFDRNGYIDYSEFVTVAMDRKSLL 423
Query: 58 DEPLLLEAF 66
+ L AF
Sbjct: 424 SKDKLESAF 432
Score = 25.4 bits (56), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPL 61
+E A +K D D +GKIS + + L
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVFGLDHL 457
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 31.2 bits (71), Expect = 0.025
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDFQ---QSVTD 58
++ D+ L + D +KD I F +F + D
Sbjct: 467 SEKTWNDV----LGEADQNKDNMIDFDEFVSMMHKICD 500
Score = 27.0 bits (60), Expect = 0.67
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
+K+D + DG++ ++ +
Sbjct: 362 KKLDKNGDGQLDKKELIE 379
Score = 26.6 bits (59), Expect = 1.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 11 GRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVTDEPLLLE 64
G N L + + + V + V+ L+++D+DK+G I + +F +Q + E L
Sbjct: 380 GYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRR 439
Query: 65 AF 66
AF
Sbjct: 440 AF 441
Score = 24.3 bits (53), Expect = 6.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPL 61
+ A D DK GKI+ ++ +
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANLFGLTSI 466
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.2 bits (71), Expect = 0.026
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQ---QSVTD 58
+ E + + L ++D + DG++ F +FQ +
Sbjct: 446 VSDVDSETWKSV----LSEVDKNNDGEVDFDEFQQMLLKLCG 483
Score = 27.0 bits (60), Expect = 0.69
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
KMD + DG++ + +
Sbjct: 342 HKMDKNGDGQLDRAELIE 359
Score = 26.2 bits (58), Expect = 1.4
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 32 VELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
V+ L +D+DK+G I + +F ++++ L AF
Sbjct: 384 VDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAF 424
Score = 25.0 bits (55), Expect = 3.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 33 ELALRKMDYDKDGKISFQDFQQSVTDEPL 61
E A R D D GKIS + +
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFGVSDV 449
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 30.8 bits (70), Expect = 0.026
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
L S I+ E R +V + +D D G + F +F++ + F
Sbjct: 23 LQRCLTQSGIAGGYKPFNLETCRLMVSM----LDRDMSGTMGFNEFKELWAVLNGWRQHF 78
Score = 24.3 bits (53), Expect = 5.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 39 MDYDKDGKISFQDFQQSVTDEPLLLEAF 66
Y GKI+F D+ L ++F
Sbjct: 115 KRYSTSGKITFDDYIACCVKLRALTDSF 142
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 30.8 bits (70), Expect = 0.030
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
+ ++D +KDG++ F +F +
Sbjct: 459 IEQVDNNKDGEVDFNEFVE 477
Score = 27.0 bits (60), Expect = 0.84
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
RK+D + DG + + +
Sbjct: 338 RKLDTNNDGMLDRDELVR 355
Score = 26.2 bits (58), Expect = 1.3
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 32 VELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
++ + +D D G I + +F + + + AF
Sbjct: 383 IDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAF 423
Score = 25.4 bits (56), Expect = 2.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEP 60
+E A + D D GKIS ++ + +
Sbjct: 419 MERAFKMFDKDGSGKISTKELFKLFSQAD 447
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 29.7 bits (67), Expect = 0.039
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ E P + ++ +++D + DG ++FQ+F
Sbjct: 39 ETESPQYIRKKGADVWFKELDINTDGAVNFQEF 71
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 30.1 bits (68), Expect = 0.044
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+LI + + + +V+ + D + DG+I+ +F
Sbjct: 86 NLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA 126
Score = 27.8 bits (62), Expect = 0.28
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 29 RDLVELALRKMDYDKDGKISFQDFQQSVTD 58
+ A ++D + +G++S + +V D
Sbjct: 135 KAEAAEAFNQVDTNGNGELSLDELLTAVRD 164
Score = 27.0 bits (60), Expect = 0.63
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 37 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQ 77
+ D+D +G + DF++ + EAFG+ + +
Sbjct: 14 DRWDFDGNGALERADFEKEAQH---IAEAFGKDAGAAEVQT 51
Score = 26.3 bits (58), Expect = 1.3
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ + L + ++ DG ++ + F
Sbjct: 45 GAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQF 80
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 30.1 bits (68), Expect = 0.046
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ + E R + AL D D DG ++ D +
Sbjct: 88 KPDRFAEMARPFLHAALGVADTDGDGAVTVADTAR 122
Score = 28.5 bits (64), Expect = 0.18
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 29 RDLVELALRKMDYDKDGKISFQDFQQSVTD 58
DL A +D D DGK+ + +
Sbjct: 131 EDLARQAAAALDTDGDGKVGETEIVPAFAR 160
Score = 25.9 bits (57), Expect = 1.8
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 5 RSLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
++++ + S L D D D +I+ ++F
Sbjct: 31 KAMLAEFGVAARSDRGQALYGGAEALWQGL-AGIADRDGDQRITREEF 77
Score = 24.3 bits (53), Expect = 6.4
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 37 RKMDYDKDGKISFQDFQQ 54
D D +G I DF
Sbjct: 11 TTFDQDGNGHIDRSDFSG 28
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 30.1 bits (68), Expect = 0.048
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
L S I+ E R +V + +D D G + F +F++ + F
Sbjct: 54 LQRCLTQSGIAGGYKPFNLETCRLMVSM----LDRDMSGTMGFNEFKELWAVLNGWRQHF 109
Score = 25.1 bits (55), Expect = 3.4
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
V ++ Y +GKI+F D+ L ++F
Sbjct: 139 QAVNSIAKR--YSTNGKITFDDYIACCVKLRALTDSF 173
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 30.3 bits (68), Expect = 0.049
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
++ + D ++ + + MD DG + ++FQ
Sbjct: 87 EKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN 129
Score = 29.1 bits (65), Expect = 0.12
Identities = 1/26 (3%), Positives = 5/26 (19%)
Query: 29 RDLVELALRKMDYDKDGKISFQDFQQ 54
V + +++
Sbjct: 138 CADVPAVYNVITDGGKVTFDLNRYKE 163
Score = 27.2 bits (60), Expect = 0.64
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 16 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
+S + + D + D +KD +S++++
Sbjct: 46 LSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEK 88
Score = 25.3 bits (55), Expect = 2.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 39 MDYDKDGKISFQDFQQ 54
+D + DG I DF+
Sbjct: 18 LDMNHDGSIQDNDFED 33
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 28.7 bits (65), Expect = 0.059
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 31 LVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSF 79
+ E +++D + DG +S+++ + + + F
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKA-------FVSKKRAIKNEQLLQLIF 42
Score = 27.1 bits (61), Expect = 0.28
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 32 VELALRKMDYDKDGKISFQDFQQ 54
++L + +D D +G+I +F +
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAK 60
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 29.8 bits (67), Expect = 0.077
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSD 73
L+ D + + +L L+ D + DGK+ + + + + L F
Sbjct: 131 DLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCG 190
Score = 29.1 bits (65), Expect = 0.13
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 23 DPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ + ++ M GK+ D
Sbjct: 225 KQELDINNISTYKKNIMALSDGGKLYRTDLAL 256
Score = 27.1 bits (60), Expect = 0.63
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
L+ + N L+ + + A D D +G I + + D
Sbjct: 172 LLPVQENFLLKFQGIKMCGKEFNK----AFELYDQDGNGYIDENELDALLKD 219
Score = 25.6 bits (56), Expect = 2.2
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 36 LRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ + DGKI + + E L F
Sbjct: 64 VDQYGQRDDGKIGIVELAHVLPTEENFLLLF 94
Score = 24.4 bits (53), Expect = 4.7
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 15 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
L+ Q E RK D D G I ++ + + D
Sbjct: 92 LLFRCQQLKSCEEFMK----TWRKYDTDHSGFIETEELKNFLKD 131
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major}
SCOP: a.39.1.8
Length = 191
Score = 29.2 bits (66), Expect = 0.092
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
L+ + D + G+I+F +F+ + E F
Sbjct: 62 LATTEKLLHM----YDKNHSGEITFDEFKDLHHFILSMREGF 99
Score = 28.8 bits (65), Expect = 0.13
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ +RK D + G + F D+ + + F
Sbjct: 129 QTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVF 165
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 29.4 bits (66), Expect = 0.095
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 29 RDLVELALRKMDYDKDGKISFQDFQQSVTD 58
+ + A + ++ + F + T+
Sbjct: 142 KSDCDAAFDTLSDGGKTMVTREIFARLWTE 171
Score = 29.4 bits (66), Expect = 0.10
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
E E + + D D I ++
Sbjct: 100 GESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133
Score = 27.1 bits (60), Expect = 0.59
Identities = 2/36 (5%), Positives = 17/36 (47%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ + ++ + + + D ++D +++ +++
Sbjct: 51 DGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86
Score = 24.8 bits (54), Expect = 4.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D ++ + D + DG I + DF+
Sbjct: 8 DFQRNKILRVFNTFYDCNHDGVIEWDDFEL 37
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 28.9 bits (65), Expect = 0.12
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
L S I+ E R ++ + +D D GK+ F F++ E F
Sbjct: 21 LQRCLTQSGINGTYSPFSLETCRIMIAM----LDRDHTGKMGFNAFKELWAALNAWKENF 76
Score = 24.2 bits (53), Expect = 5.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 41 YDKDGKISFQDFQQSVTDEPLLLEAF 66
Y K+G+I F D+ L + F
Sbjct: 115 YSKNGRIFFDDYVACCVKLRALTDFF 140
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 29.1 bits (66), Expect = 0.12
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ L + + + + + V+ +R +D + DGKI F +F +
Sbjct: 145 AHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
Score = 26.1 bits (58), Expect = 1.4
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 32 VELALRKMDYDKDGKISFQDF-----QQSVTDEPLLLEAF 66
+L L ++D D GKI + +F + + L+ AF
Sbjct: 89 FDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAF 128
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 28.0 bits (63), Expect = 0.16
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ V++ ++ D + DGKIS ++F
Sbjct: 43 SKDKVKEASAKLIKMADKNSDGKISKEEF 71
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 28.6 bits (64), Expect = 0.18
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTD 58
K D DK GK+ +
Sbjct: 164 AYTFFEKADTDKSGKLERTELVHLFRK 190
Score = 27.9 bits (62), Expect = 0.29
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 7 LMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
++Y ++ E +RD V + + + +D+
Sbjct: 58 VLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDW 103
Score = 26.7 bits (59), Expect = 0.91
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ L +D D DG + + +
Sbjct: 123 PSLIALLSNSYYDVLDDDGDGTVDVDELKT 152
Score = 24.8 bits (54), Expect = 4.1
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 8/50 (16%)
Query: 37 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL-PSDAARQSFLSTLQA 85
D D DGK+ + + Q + +D + ++
Sbjct: 43 DTFDLDSDGKMEMDEVLY-------WPDRMRQLVNATDEQVEKMRDAVRV 85
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 28.6 bits (64), Expect = 0.18
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
++ +R + +D D++G I+ +++
Sbjct: 97 EKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKA 133
Score = 26.7 bits (59), Expect = 0.80
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 32 VELALRKMDYDKDGKISFQDFQQ 54
E R D D+ G++ + +
Sbjct: 147 CEETFRVCDIDESGQLDVDEMTR 169
Score = 24.8 bits (54), Expect = 4.6
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 37 RKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQ 77
+D + +GKIS + +D +++ G P A R
Sbjct: 23 NFLDVNHNGKISLDEMVYKASD--IVINNLGAT-PEQAKRH 60
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 27.8 bits (62), Expect = 0.18
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+++ + +D ++D ++ FQ+F
Sbjct: 55 AVIDEIFQGLDANQDEQVDFQEF 77
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 27.8 bits (62), Expect = 0.20
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
V+ ++ +D +DGK+ FQ F
Sbjct: 49 LAVDKIMKDLDQCRDGKVGFQSF 71
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 27.4 bits (61), Expect = 0.23
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ + +D +KD +++FQ++
Sbjct: 51 AEIARLMEDLDRNKDQEVNFQEY 73
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 28.0 bits (62), Expect = 0.24
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 3 QKRSLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ L R L + + E+ +E V +E + +D + D ++SF++F
Sbjct: 32 NQGEFKELVRKDLQNFLKKENKNEKV---IEHIMEDLDTNADKQLSFEEF 78
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.5 bits (61), Expect = 0.24
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ + +D ++D ++ FQ++
Sbjct: 53 AAFQKLMSNLDSNRDNEVDFQEY 75
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 27.3 bits (61), Expect = 0.24
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
++ +++D + DG++SF++F
Sbjct: 47 RTLDDLFQELDKNGDGEVSFEEF 69
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 27.9 bits (62), Expect = 0.25
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
++ ++ +D ++D ++ F ++
Sbjct: 62 GSLDEKMKSLDVNQDSELKFNEY 84
>4exo_A Methyl-accepting chemotaxis protein; signaling protein,
chemotaxis receptor, PAS domain, four HEL bundle; HET:
MSE; 1.90A {Vibrio parahaemolyticus}
Length = 146
Score = 28.1 bits (63), Expect = 0.27
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDG 45
+ I D D + + + L+ M ++ DG
Sbjct: 27 TAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 58
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.5 bits (61), Expect = 0.28
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
++ ++K+D D DG++ FQ+F
Sbjct: 58 LDRMMKKLDLDSDGQLDFQEF 78
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.4 bits (61), Expect = 0.29
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ + K D ++D KI F +F
Sbjct: 52 NYLADVFEKKDKNEDKKIDFSEF 74
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 27.5 bits (61), Expect = 0.29
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
D G R + ++ +D + DG+ISF ++
Sbjct: 49 SDTGNRKAADKLIQNLDANHDGRISFDEY 77
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 28.0 bits (63), Expect = 0.29
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
VR ++ + D + ++F +F F
Sbjct: 43 PVTVRSIISM----FDRENKAGVNFSEFTGVWKYITDWQNVF 80
Score = 26.8 bits (60), Expect = 0.62
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 30 DLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
++ +RK D G+I+F DF Q L + F
Sbjct: 110 QFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIF 146
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 27.5 bits (61), Expect = 0.29
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
+D V+ L+ +D + D ++ F +F
Sbjct: 46 QSGKDKDAVDKLLKDLDANGDAQVDFSEF 74
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.5 bits (61), Expect = 0.31
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ LVE + +D +KD ++ F +F
Sbjct: 47 MSQKDPMLVEKIMNDLDSNKDNEVDFNEF 75
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 27.8 bits (62), Expect = 0.31
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ ++ + D D +G ISF +F L F
Sbjct: 85 SPQTALRMMRI----FDTDFNGHISFYEFMAMYKFMELAYNLF 123
Score = 25.9 bits (57), Expect = 1.5
Identities = 7/62 (11%), Positives = 15/62 (24%), Gaps = 11/62 (17%)
Query: 16 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCLPSDAA 75
+ + D + +D D+ G + + G L A
Sbjct: 41 LLNTIPLDQYTRIYQW----FMGVDRDRSGTLEINELMM-------GQFPGGIRLSPQTA 89
Query: 76 RQ 77
+
Sbjct: 90 LR 91
Score = 24.0 bits (52), Expect = 6.8
Identities = 1/20 (5%), Positives = 4/20 (20%)
Query: 35 ALRKMDYDKDGKISFQDFQQ 54
L ++ +
Sbjct: 157 LLHRLFARGMAFCDLNCWIA 176
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 27.4 bits (61), Expect = 0.33
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
V+ ++++D + DG++ FQ+F
Sbjct: 54 VDKIMKELDENGDGEVDFQEF 74
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.4 bits (61), Expect = 0.34
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ + +M + G++ + DF
Sbjct: 60 EQFDRLWNEMPVNAKGRLKYPDF 82
Score = 26.3 bits (58), Expect = 0.78
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 35 ALRKMDYDKDGKISFQDFQQ 54
D K IS ++F+
Sbjct: 29 EFENFDTMKTNTISREEFRA 48
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.1 bits (60), Expect = 0.35
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ ++ + +D + D ++ FQ++
Sbjct: 54 EGLKKLMGSLDENSDQQVDFQEY 76
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.1 bits (60), Expect = 0.36
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 4 KRSLMYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
K L L L S + + L + +D ++D ++ FQ++
Sbjct: 34 KSELKELLTRELPSWLGKRTDEAAFQKL----MSNLDSNRDNEVDFQEY 78
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 26.9 bits (60), Expect = 0.37
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
E +++D D+DG I+FQ+F
Sbjct: 63 AEAVFQRLDADRDGAITFQEF 83
Score = 24.6 bits (54), Expect = 2.8
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 10 LGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
GR +L D D +E + L D ++ G++ ++F+
Sbjct: 9 SGRENLYFQGADGDGEE-LARLRS-VFAACDANRSGRLEREEFRA 51
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 27.2 bits (60), Expect = 0.38
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ + +D ++D ++ FQ++
Sbjct: 65 AAFQKLMSNLDSNRDNEVDFQEY 87
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.1 bits (60), Expect = 0.38
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
++V+ + +D + DG+ FQ+F
Sbjct: 52 EVVDKVMETLDSNGDGECDFQEF 74
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 27.6 bits (61), Expect = 0.40
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 30 DLVELALRKM----DYDKDGKISFQDFQQ 54
L L+++ + S+ DF +
Sbjct: 80 PKTHLELKRLIREVSSGSEETFSYSDFLR 108
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 27.4 bits (61), Expect = 0.40
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDG 45
+ I D D + + + L+ M ++ DG
Sbjct: 34 TAIKPLYDSDVNGSNKQAAKEILKAMRFESDG 65
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 26.9 bits (60), Expect = 0.44
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L D+D DGKI ++FQ+
Sbjct: 86 LAAADHDGDGKIGAEEFQE 104
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.1 bits (60), Expect = 0.45
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 30 DLVELALRKMDYDKDGKISFQDF 52
+ +D +KD ++ F ++
Sbjct: 53 CDYNKFMSVLDTNKDCEVDFVEY 75
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 27.6 bits (61), Expect = 0.46
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+++D + G ++F +F
Sbjct: 173 FKELDKNGTGSVTFDEF 189
Score = 24.5 bits (53), Expect = 4.8
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 16 ISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTD 58
I + + +K D ++ GK+ + + +
Sbjct: 34 IRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLE 76
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 26.8 bits (60), Expect = 0.46
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L+ D D DG I ++
Sbjct: 87 LKAGDSDGDGAIGVDEWAA 105
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 26.8 bits (60), Expect = 0.47
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L D D DGKI ++FQ
Sbjct: 87 LAAGDTDGDGKIGVEEFQS 105
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 26.4 bits (59), Expect = 0.56
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLE 64
+ V+ ++ ++D D DG I F +F P L++
Sbjct: 33 GSTSADEVQRMM----AEIDTDGDGFIDFNEFISFCNANPGLMK 72
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 26.9 bits (60), Expect = 0.60
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L++ D + DG++ F++F +
Sbjct: 163 LQECDKNNDGEVDFEEFVE 181
Score = 26.5 bits (59), Expect = 0.95
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 22 EDPDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
+ V +++ +D+D++G I + +F +Q + LL AF
Sbjct: 83 SQIEAEVDHILQ----SVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAF 129
Score = 26.1 bits (58), Expect = 1.3
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPL 61
++ Q E + A ++ D D GKI+ ++ + +
Sbjct: 111 TVCMDKQLLLSRERLLA----AFQQFDSDGSGKITNEELGRLFGVTEV 154
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 27.2 bits (61), Expect = 0.63
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
+ ++ +D + G+I + DF +Q+ + + L F
Sbjct: 91 IPPDIHQVLR----DIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPF 135
Score = 26.4 bits (59), Expect = 1.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 40 DYDKDGKISFQDF 52
D + DG+I F +F
Sbjct: 177 DLNGDGEIDFHEF 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.73
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVTDEPL 61
++ +++ K KI + Q+S++ E +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 26.9 bits (59), Expect = 0.94
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 22/66 (33%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKIS--FQDFQQSVTDEPL--LLEAFGQCLPSDAA 75
D++P EL + + Y +S + + D+ L L F
Sbjct: 50 ADDEP----TTPAELVGKFLGY-----VSSLVEPSKVGQFDQVLNLCLTEF--------- 91
Query: 76 RQSFLS 81
+L
Sbjct: 92 ENCYLE 97
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 26.3 bits (58), Expect = 0.75
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
++ ++ +D + D +I F+++
Sbjct: 52 IDDLMKSLDKNSDQEIDFKEY 72
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 26.7 bits (60), Expect = 0.75
Identities = 1/17 (5%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ +++ ++ + F
Sbjct: 43 ITEIESTLPAEVDMEQF 59
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 26.7 bits (60), Expect = 0.76
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 27 GVRDLVELALRKMDYDKDGKISFQDFQQ 54
G+ + E + K D + DG I+ ++F +
Sbjct: 105 GIEKVAEQ-VMKADANGDGYITLEEFLE 131
Score = 26.3 bits (59), Expect = 1.0
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF---------QQSVTDEPLLLEAF 66
++ ++ + + +D D +G+I +F Q D+ L +
Sbjct: 34 NEQLLQLIFK----SIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLY 81
Score = 23.6 bits (52), Expect = 7.5
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
Q +D + L + MD D DGK++ ++
Sbjct: 60 KFYGSIQGQDLSDDKIGLKV-LYKLMDVDGDGKLTKEEVTS 99
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 26.9 bits (60), Expect = 0.78
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF-----QQSVTDEPLLLEAF 66
+ +++ +D + G I++ +F + + L AF
Sbjct: 71 KKWDINRILQ----ALDINDRGNITYTEFMAGCYRWKNIESTFLKAAF 114
Score = 24.9 bits (55), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 35 ALRKMDYDKDGKISFQDFQQSVTDEPL 61
A K+D D+DG IS D V D+ L
Sbjct: 113 AFNKIDKDEDGYISKSDIVSLVHDKVL 139
Score = 23.8 bits (52), Expect = 9.6
Identities = 5/30 (16%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ ++ + E K+D + +G +S ++
Sbjct: 35 NNHIKYINE-LFYKLDTNHNGSLSHREIYT 63
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 26.6 bits (59), Expect = 0.80
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAF 66
+ R +V + MD D GK+ F++F+ + +
Sbjct: 46 IDTCRSMVAV----MDSDTTGKLGFEEFKYLWNNIKKWQAIY 83
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 25.5 bits (57), Expect = 0.83
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
+ ++D D +G+++ +F
Sbjct: 39 IVKFFEEIDVDGNGELNADEF 59
Score = 24.8 bits (55), Expect = 1.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 35 ALRKMDYDKDGKISFQDFQ-------QSVTDE 59
K D +KDGK+S +F+ T E
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQE 37
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 26.1 bits (58), Expect = 0.93
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 36 LRKMDYDKDGKISFQDFQQSVT 57
+R+ D D DG++++++F Q +T
Sbjct: 71 IREADIDGDGQVNYEEFVQMMT 92
Score = 24.9 bits (55), Expect = 2.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
+D D +E +R+ A R D D +G IS + + +T
Sbjct: 23 KDTDSEEEIRE----AFRVEDKDGNGYISAAELRHVMT 56
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 26.0 bits (58), Expect = 0.93
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L D D DG I +F
Sbjct: 86 LADGDKDGDGMIGVDEFAA 104
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 26.3 bits (59), Expect = 0.97
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D + +L+ D D DG+I + +F
Sbjct: 132 DVRIEELMRDV----DQDNDGRIDYNEFVA 157
Score = 25.6 bits (57), Expect = 1.7
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
+ + DL++ D D G I +++F + E L AF
Sbjct: 61 KESEILDLMQ----AADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAF 105
Score = 24.8 bits (55), Expect = 4.0
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
H + ++ + A D D G I+ + QQ
Sbjct: 91 HLNKIEREDHLFA----AFTYFDKDGSGYITPDELQQ 123
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 26.4 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDK-DGKISFQDFQ--QSVTD 58
H DP + RDL E L +M+ K + + SF D V D
Sbjct: 236 HRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVAD 279
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 25.6 bits (57), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ ++D + DG++SF++F
Sbjct: 51 IEEVDKNGDGEVSFEEF 67
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 26.1 bits (58), Expect = 1.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
V+ AL + D +G I + F
Sbjct: 163 VDQALSEAPIDGNGLIDIKKF 183
Score = 23.8 bits (52), Expect = 8.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
L M + G I+F F
Sbjct: 95 LDSMVAEAPGPINFTMF 111
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 25.9 bits (58), Expect = 1.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 32 VELALRKMDYDKDGKISFQDFQQSVT 57
V+ R+ DK G ++ +F + +
Sbjct: 114 VDEMYREAPIDKKGNFNYVEFTRILK 139
Score = 25.1 bits (56), Expect = 2.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
L M + G I+F F
Sbjct: 45 LEGMMSEAPGPINFTMF 61
Score = 24.8 bits (55), Expect = 4.0
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
DP++ +R+ A D + G I ++ +T
Sbjct: 70 NGTDPEDVIRN----AFACFDEEASGFIHEDHLRELLT 103
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 26.4 bits (57), Expect = 1.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
LRK D +KD K++F++ +
Sbjct: 17 LRKADKNKDNKMNFKELKD 35
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 25.6 bits (57), Expect = 1.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L D D DGKI +F +
Sbjct: 86 LAAGDSDHDGKIGADEFAK 104
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 26.4 bits (58), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
DE V +++ A D D DG++++++F Q +T
Sbjct: 420 DEEVDEMIREA----DIDGDGQVNYEEFVQMMT 448
Score = 25.6 bits (56), Expect = 2.2
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+D D +E +R+ A R D D +G IS + +
Sbjct: 379 KDTDSEEEIRE----AFRVFDKDGNGYISAAELRH 409
Score = 24.1 bits (52), Expect = 8.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 17 SHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ +D+ +E + + E A D D DG I+ ++
Sbjct: 300 YNTRDQLTEEQIAEFKE-AFSLFDKDGDGTITTKEL 334
Score = 24.1 bits (52), Expect = 8.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ ++D D +G I F +F
Sbjct: 354 INEVDADGNGTIDFPEF 370
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 26.3 bits (57), Expect = 1.4
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+++ +D D + ++ + +D D GK+ ++F
Sbjct: 558 RRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYI 599
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 26.0 bits (57), Expect = 1.4
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 33 ELALRKM----DYDKDGKISFQDF 52
L ++KM IS++DF
Sbjct: 85 HLEMKKMISEVTGGVSDTISYRDF 108
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 25.8 bits (57), Expect = 1.5
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 33 ELALRKM----DYDKDGKISFQDF 52
L L+K+ S+ DF
Sbjct: 67 HLELKKLIGEVSSGSGETFSYPDF 90
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 25.9 bits (57), Expect = 1.5
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 32 VELALRKMDYDKDGKISFQDFQQ 54
E R D D G + + +
Sbjct: 151 CEATFRHCDLDNAGDLDVDEMTR 173
Score = 25.9 bits (57), Expect = 1.7
Identities = 5/47 (10%), Positives = 15/47 (31%)
Query: 8 MYLGRNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ + + +R+ + D D G I+ +++
Sbjct: 91 GWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKA 137
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 26.0 bits (58), Expect = 1.6
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
D + D+++ D D DG+I + +F
Sbjct: 115 DIHIDDMIKEI----DQDNDGQIDYGEF 138
Score = 25.6 bits (57), Expect = 1.7
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ H + +E + A D D G I+ + QQ
Sbjct: 70 AATVHLNKLEREENLVS----AFSYFDKDGSGYITLDEIQQ 106
Score = 25.3 bits (56), Expect = 2.8
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF------QQSVTDEPLLLEAF 66
+ ++DL++ D DK G I + +F + E L+ AF
Sbjct: 44 MESEIKDLMD----AADIDKSGTIDYGEFIAATVHLNKLEREENLVSAF 88
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 25.9 bits (58), Expect = 1.6
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 14/52 (26%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQ----------SVTDEPLLLEAF 66
DE V +++ A D D DG++++++F Q + + ++
Sbjct: 119 DEEVDEMIREA----DIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKI 166
Score = 24.4 bits (54), Expect = 4.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+D D +E +R+ A R D D +G IS + +
Sbjct: 78 KDTDSEEEIRE----AFRVFDKDGNGYISAAELRH 108
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
L M + G I+F F
Sbjct: 64 LDAMIKEASGPINFTVF 80
Score = 24.9 bits (55), Expect = 3.0
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 32 VELALRKMDYDKDGKISFQDF 52
++ D G + +++
Sbjct: 133 IKNMWAAFPPDVAGNVDYKNI 153
Score = 24.5 bits (54), Expect = 5.1
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ DP++ + A + +D D G I ++
Sbjct: 89 KGADPEDVIMG----AFKVLDPDGKGSIKKSFLEE 119
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 25.9 bits (56), Expect = 1.8
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 26 EGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ R +V + MD D GK+ F++F+
Sbjct: 774 DTCRSMVAV----MDSDTTGKLGFEEFKY 798
Score = 25.9 bits (56), Expect = 1.8
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 13 NSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
N +IS +D + + + MD D +GK+ +F
Sbjct: 560 NRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNI 601
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 25.7 bits (55), Expect = 1.9
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 3 QKRSLMYLGRNSLISHPQDEDPDEG-VRDLVELALRKMDYDKDGKISFQDF 52
Q YL L P E E D D D I+ ++
Sbjct: 166 QHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETC----DLDNDKYIALDEW 212
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 25.7 bits (57), Expect = 2.0
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQS 55
G+ + ++ + +DGK F +S
Sbjct: 410 AGGIPRTAQSEETRVWHRRDGKWQIVHFHRS 440
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 24.8 bits (55), Expect = 2.0
Identities = 6/17 (35%), Positives = 15/17 (88%)
Query: 36 LRKMDYDKDGKISFQDF 52
+R+ D D+DG++++++F
Sbjct: 48 IREADVDQDGRVNYEEF 64
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 25.5 bits (57), Expect = 2.0
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
DE ++++++ A D D DG++S Q+F
Sbjct: 114 DEELQEMIDEA----DRDGDGEVSEQEF 137
Score = 25.5 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
++D E + A + D D+ GKISF++ ++
Sbjct: 71 KMSEKDTKEEILK----AFKLFDDDETGKISFKNLKR 103
Score = 23.6 bits (52), Expect = 9.5
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 36 LRKMDYDKDGKISFQDFQQSVT-------DEPLLLEAF 66
+ ++D + GK++F DF +T + +L+AF
Sbjct: 48 ISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAF 85
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 25.2 bits (56), Expect = 2.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
L+ D D DGKI +F+
Sbjct: 87 LKAADKDGDGKIGIDEFET 105
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 25.6 bits (57), Expect = 2.0
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 36 LRKMDYDKDGKISFQDFQQSVT 57
++++ DG I+++ F +
Sbjct: 118 MKEVSVSGDGAINYESFVDMLV 139
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 25.2 bits (56), Expect = 2.2
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 36 LRKMDYDKDGKISFQDFQQSVT 57
L+ ++ D +G+I ++ F + V
Sbjct: 125 LKGVEVDSNGEIDYKKFIEDVL 146
Score = 24.5 bits (54), Expect = 4.9
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D D V+ A + D + GK+S D +
Sbjct: 75 DATTKAKTEDFVK-AFQVFDKESTGKVSVGDLRY 107
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 25.2 bits (56), Expect = 2.2
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
DP++ +R+ A D D G I + +
Sbjct: 79 SGTDPEDALRN----AFSMFDEDGQGFIPEDYLKDLLE 112
Score = 23.6 bits (52), Expect = 8.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 36 LRKMDYDKDGKISFQDF 52
L M + G+++F F
Sbjct: 54 LNAMLKECPGQLNFTAF 70
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 25.3 bits (56), Expect = 2.3
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVT 57
D+D E + D + G ++ + +T
Sbjct: 78 HDKDNVEELIK----MFAHFDNNCTGYLTKSQMKNILT 111
Score = 25.3 bits (56), Expect = 2.5
Identities = 1/17 (5%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
+K+ ++++ +
Sbjct: 53 EKKIKELYGDNLTYEQY 69
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 25.2 bits (56), Expect = 2.4
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
+E +++++ A D + D +I +F
Sbjct: 136 EEELQEMIAEA----DRNDDNEIDEDEF 159
Score = 25.2 bits (56), Expect = 2.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ D E + A R D D G I+ +D ++
Sbjct: 93 KMGERDSREEILK----AFRLFDDDNSGTITIKDLRR 125
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 24.9 bits (55), Expect = 2.4
Identities = 5/17 (29%), Positives = 14/17 (82%)
Query: 36 LRKMDYDKDGKISFQDF 52
+++ D D DG++++++F
Sbjct: 51 IKEADLDGDGQVNYEEF 67
Score = 24.9 bits (55), Expect = 2.5
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D D +E +++ A + D D++G IS + +
Sbjct: 4 DTDAEEELKE----AFKVFDKDQNGYISASELRH 33
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 25.1 bits (56), Expect = 2.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
D+ V +++ A D D DG I++++F
Sbjct: 118 DDEVDEMIREA----DIDGDGHINYEEF 141
Score = 25.1 bits (56), Expect = 2.7
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+++D +E +L+E A + D D +G IS + +
Sbjct: 77 KEQDSEE---ELIE-AFKVFDRDGNGLISAAELRH 107
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain,
membrane protein; 1.38A {Helicobacter pylori} PDB:
3ub7_A 3ub8_A 3ub9_A*
Length = 181
Score = 25.1 bits (55), Expect = 2.6
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 14 SLISHPQDEDPDEGVRDLVELALRKMDYDKDG 45
I ++ R + ++++ DK
Sbjct: 38 QGIHEYYKSFDNDTARKMALDYFKRINDDKGM 69
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 25.3 bits (56), Expect = 2.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 20 QDEDPDEGVRDLVELALRK 38
Q++ D+ +DL+ LA +
Sbjct: 214 QEKTLDDKNQDLITLANHR 232
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 25.3 bits (56), Expect = 2.8
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 20 QDEDPDEGVRDLVELALRK 38
+ + + LV+ A
Sbjct: 209 SEPNVQKAAAALVDAAKTH 227
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 25.2 bits (56), Expect = 2.9
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+D+ + +L + R D + DG I ++ +
Sbjct: 86 KDDSKGKSEEELSD-LFRMFDKNADGYIDLEELKI 119
Score = 24.8 bits (55), Expect = 4.0
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
++ D + DG+I + +F
Sbjct: 137 MKDGDKNNDGRIDYDEF 153
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 24.4 bits (54), Expect = 2.9
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ +E + L E + +D D G I+F + +
Sbjct: 15 ERLSEEEIGGLKE-LFKMIDTDNSGTITFDELKD 47
Score = 23.2 bits (51), Expect = 8.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
+ ++DL++ D DK G I + +F
Sbjct: 57 MESEIKDLMD----AADIDKSGTIDYGEF 81
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial,
DNA gyrase B, GY isomerase-isomerase inhibitor complex;
HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A*
1kzn_A* 3g7e_A*
Length = 220
Score = 25.2 bits (56), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
++GKI Q ++ V PL
Sbjct: 136 REGKIHRQIYEHGVPQAPL 154
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 25.2 bits (56), Expect = 3.0
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
D +E +R+ A D + K++ + +
Sbjct: 81 SGTDSEETIRN----AFAMFDEQETKKLNIEYIKD 111
Score = 24.0 bits (53), Expect = 7.0
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
L M + G ++F F
Sbjct: 56 LTAMLKEAPGPLNFTMF 72
>3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta
propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB:
3qed_A* 3qef_A*
Length = 307
Score = 25.1 bits (55), Expect = 3.0
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKI 47
H PD G + +++ ++ Y+ DG I
Sbjct: 255 HTGAGRPD-GGQYRRSVSIDELFYNPDGTI 283
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 24.7 bits (55), Expect = 3.2
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ D ++ +L+E A + D + DG IS + +
Sbjct: 76 QLKCNDSEQ---ELLE-AFKVFDKNGDGLISAAELKH 108
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP;
2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Length = 391
Score = 25.1 bits (56), Expect = 3.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
++GKI Q ++ V PL
Sbjct: 135 REGKIHRQIYEHGVPQAPL 153
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 24.5 bits (54), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 37 RKMDYDKDGKISFQDF 52
++D D DG ISF +F
Sbjct: 53 AEIDTDGDGFISFDEF 68
Score = 23.4 bits (51), Expect = 7.6
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 21 DEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
ED + + D ++ D + DGKIS +
Sbjct: 3 AEDTPQDIADRER-IFKRFDTNGDGKISSSELGD 35
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 24.8 bits (55), Expect = 3.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ + D D DG+I+ +F
Sbjct: 138 IEEFDLDGDGEINENEF 154
Score = 24.4 bits (54), Expect = 4.1
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
DP + ++ A + D D GKIS ++ ++
Sbjct: 90 LKRDPLDEIKR----AFQLFDDDHTGKISIKNLRR 120
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 24.8 bits (55), Expect = 3.7
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
+ +++ D + DG++ F++F
Sbjct: 124 HRDIEEIIRDV----DLNGDGRVDFEEF 147
Score = 23.6 bits (52), Expect = 8.0
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 36 LRKMDYDKDGKISFQDF 52
++++ + G + F DF
Sbjct: 53 SQQINMNLGGHVDFDDF 69
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 24.6 bits (54), Expect = 3.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
+ D D DGKI ++F
Sbjct: 86 MAAGDKDGDGKIGVEEFST 104
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 24.8 bits (55), Expect = 3.8
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ ++D D G + F++F
Sbjct: 133 IDEIDADGSGTVDFEEF 149
Score = 24.4 bits (54), Expect = 4.2
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 15 LISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
L E + +R+ A R D + +G IS ++
Sbjct: 80 LGEEVNPEQMQQELRE----AFRLYDKEGNGYISTDVMRE 115
Score = 23.7 bits (52), Expect = 9.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ + D +G I F F
Sbjct: 56 IDEFDPFGNGDIDFDSF 72
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 24.8 bits (55), Expect = 4.0
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDF 52
+E + DL++ + D + DG+I F +F
Sbjct: 131 EEDIEDLMKDS----DKNNDGRIDFDEF 154
Score = 23.7 bits (52), Expect = 7.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ ++D D G I F++F
Sbjct: 62 IEEVDEDGSGTIDFEEF 78
Score = 23.7 bits (52), Expect = 8.2
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+++ + +L R D + DG I ++ +
Sbjct: 87 KEDAKGKSEEELAN-CFRIFDKNADGFIDIEELGE 120
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 24.6 bits (54), Expect = 4.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+R+ D D DG ++ +F
Sbjct: 83 VREGDLDGDGALNQTEF 99
Score = 24.6 bits (54), Expect = 4.4
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 36 LRKMDYDKDGKISFQDFQQSVT 57
L + + ++D +
Sbjct: 9 LLETTSTTKMETKYEDMLPVMA 30
Score = 23.8 bits (52), Expect = 6.7
Identities = 2/35 (5%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
E+ + + + I+ + ++
Sbjct: 34 DVEEFVSELCK----GFSLLADPERHLITAESLRR 64
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 24.5 bits (54), Expect = 4.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 36 LRKMDYDKDGKISFQDFQQ 54
+ D D DGKI +FQ+
Sbjct: 86 MDAADNDGDGKIGADEFQE 104
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.80A {Thermus
thermophilus} SCOP: e.22.1.1
Length = 348
Score = 24.9 bits (55), Expect = 4.1
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 14/54 (25%)
Query: 36 LRKMDYDK---DGKISFQDFQQSVTDEPLLLEAFGQCLPSDAARQSFLSTLQAC 86
L + DK + + ++ A G+ + A
Sbjct: 295 LPYLLRDKKKVSESLHW-----------VVPLAPGRLVVRPLPEGLLREAFAAW 337
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 24.9 bits (55), Expect = 4.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 20 QDEDPDEGVRDLVELALRK 38
Q + E L+ELALR
Sbjct: 204 QIPEVAESAHRLIELALRG 222
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex,
isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus}
SCOP: d.14.1.3 d.122.1.2
Length = 390
Score = 24.7 bits (55), Expect = 4.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
++GK F + EPL
Sbjct: 133 REGKHHRIAFSRGEVTEPL 151
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 24.4 bits (54), Expect = 5.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 20 QDEDPDEGVRDLVELALRK 38
DP VR LVE+A
Sbjct: 202 TSPDPQVAVRRLVEVANDA 220
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 24.4 bits (54), Expect = 5.1
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 18 HPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ ++ +R A R D + G I Q
Sbjct: 71 RMKQTTSEDILRQ----AFRTFDPEGTGYIPKAALQD 103
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 24.4 bits (54), Expect = 5.3
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 25 DEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEP 60
DE V ++++L + D +G + ++DF + V P
Sbjct: 119 DEDVDEIIKLT--DLQEDLEGNVKYEDFVKKVMAGP 152
Score = 24.0 bits (53), Expect = 6.9
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
++ D +E A + D + G IS + +
Sbjct: 78 CEQGTFA---DYME-AFKTFDREGQGFISGAELRH 108
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding,
structure-based drug antimicrobial, isomerase-isomerase
inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus
aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Length = 198
Score = 24.4 bits (54), Expect = 5.5
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
++ I Q +++ V L
Sbjct: 109 RNETIYHQAYKKGVPQFDL 127
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 24.6 bits (54), Expect = 5.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 28 VRDLVELALRKMDYDKDGKISFQDFQQS 55
+R+L ++ +D I+ QDF S
Sbjct: 241 IRELNVEQVKCLDISAMRAITEQDFHSS 268
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 23.9 bits (52), Expect = 5.6
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
P + + L D GK+S F
Sbjct: 42 PSTLLAHIWSLC----DTKDCGKLSKDQF 66
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 24.1 bits (53), Expect = 5.8
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 20 QDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQ 54
+ + E D +E R D + +GK+ + +
Sbjct: 81 RGQGTYE---DYLE-GFRVFDKEGNGKVMGAELRH 111
Score = 23.7 bits (52), Expect = 8.0
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 35 ALRKMDYDKDGKISFQDFQQSVT 57
+ D +G I+++ F + +
Sbjct: 127 TVLAGHEDSNGCINYEAFLKHIL 149
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 23.6 bits (52), Expect = 5.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ + D + +G I F DF
Sbjct: 49 MNEYDREGNGYIGFDDF 65
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 23.7 bits (52), Expect = 5.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 36 LRKMDYDKDGKISFQDF 52
+++ D D +G I +F
Sbjct: 51 MKEADEDGNGVIDIPEF 67
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 24.0 bits (52), Expect = 6.3
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
P + + L+ D D+DGK++ ++F
Sbjct: 46 PQAQLASIWNLS----DIDQDGKLTAEEF 70
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 23.9 bits (52), Expect = 6.3
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQDF 52
P + + EL+ D+DKDG ++ +F
Sbjct: 41 PILELSHIWELS----DFDKDGALTLDEF 65
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone,
glyceraldehyd phosphate, aldol condensation, glycolysis,
lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB:
3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Length = 349
Score = 24.2 bits (53), Expect = 6.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 24 PDEGVRDLVELALRKMDYDKDGKISFQD 51
+ + + + KM+ D D + +F
Sbjct: 258 LKSEIEEALRYGVVKMNVDTDTQYAFTR 285
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic
process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB:
2w11_A
Length = 201
Score = 24.0 bits (52), Expect = 7.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 9 YLGRNSLISHPQDEDPDEGVRDLVELA 35
++ R + I P PD V D EL
Sbjct: 168 FVNRKNTIVDPIGGKPDVIVNDFKELY 194
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 24.0 bits (53), Expect = 7.9
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
++G +F+ L
Sbjct: 151 REGSEHRMEFRDGNAASKL 169
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
d.122.1.2
Length = 390
Score = 24.0 bits (53), Expect = 8.0
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 43 KDGKISFQDFQQSVTDEPL 61
+DG++ F+ + L
Sbjct: 132 RDGQVYNIAFENGEKVQDL 150
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 24.0 bits (52), Expect = 8.4
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 28 VRDLVELALRKMDYDKDGKISFQDFQQS 55
+R L + + D+ I++ DF+ +
Sbjct: 303 IRSLQTADIATITPDQVRPIAYIDFENA 330
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 23.3 bits (51), Expect = 8.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 36 LRKMDYDKDGKISFQDF 52
+ ++D D G I F++F
Sbjct: 62 IEEVDEDGSGTIDFEEF 78
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 24.1 bits (52), Expect = 8.8
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 17 SHPQDEDPDEGV-RDLVELALRKMDYDKDGKISFQDFQQSVTDEPLLLEAFGQCL 70
P+ P + ++ + + +DG S + L E +
Sbjct: 70 RLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQS 124
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 23.0 bits (50), Expect = 9.5
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 36 LRKMDYDKDGKISFQDF 52
++ D D GK + F
Sbjct: 56 VKDYDKDNSGKFDQETF 72
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 23.7 bits (52), Expect = 9.8
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 12 RNSLISHPQDEDPDEGVRDLVELALRKMDYDKDGKISFQDFQQSVTDEPLL 62
+ + H + P RD+++ + +K + E +
Sbjct: 233 LDKFLRHCESLRPGAAPRDMMDAFILSA--EKKAAGDSHGGGARLDLENVP 281
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein
structure initiative; HET: 0GY; 1.35A {Sphingomonas
paucimobilis} PDB: 4d95_A* 4d9d_A 2qah_A 4d8l_A
Length = 303
Score = 23.9 bits (51), Expect = 10.0
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 52 FQQSVTDEPLLLEAFGQCLPSDAARQSFL 80
Q ++ D+ L+++ + P+ + L
Sbjct: 254 MQDAIPDDGLVVDMIPRIAPTPELQHKML 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,295,423
Number of extensions: 66912
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 349
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)