BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8462
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDI---IAKVKAHC 241
DDYEV+ ELD +A AQ GVLG RMT CAIALV D+V+ + +V
Sbjct: 338 DDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV 397
Query: 242 VSNPTPTFFVSDAYQGATHVSLE 264
V P +F+V+ G+T + +E
Sbjct: 398 VGYP-ASFYVAQIGSGSTKLDVE 419
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSI 182
L + TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+
Sbjct: 64 LELXTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQY 123
Query: 183 F 183
+
Sbjct: 124 Y 124
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 183 FNDDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDIIAKVKAHCV 242
DDYEVSC ELD + A ++PGV G R T C + L+ ++ H
Sbjct: 321 LRDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTVTLLEASAAPHAXRHIQEH-- 378
Query: 243 SNPTPTFFVSDAYQGATHVSL 263
T TF++S A GA + L
Sbjct: 379 YGGTATFYLSQAADGAKVLCL 399
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 186 DYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDI 233
+YEVSCKELD A L G G R+T AIALV + I
Sbjct: 275 NYEVSCKELDFFVERALKL-GAYGARLTGAGFGGSAIALVDKEDAETI 321
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDI 233
++Y VSC+ELD A L G G R+T AIALV D I
Sbjct: 276 ENYRVSCEELDFFVKKAXEL-GAYGARLTGAGFGGSAIALVDKDKAKTI 323
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 20/104 (19%)
Query: 141 HLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFN-------DDYEVSCKE 193
H++S++AR + + +K+ AP+ N V+ + + N D YE SC E
Sbjct: 354 HVYSEAAR----------VLQFKKICEEAPE--NMVQLLGELMNQSHMSCRDMYECSCPE 401
Query: 194 LDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDIIAKV 237
LD + + G G R+T C +++V D + +A V
Sbjct: 402 LDQLVDICRKF-GAQGSRLTGAGWGGCTVSMVPADKLPSFLANV 444
>pdb|1FBA|A Chain A, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|B Chain B, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|C Chain C, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|D Chain D, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
Length = 361
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 177 KGVVSIFNDDYEVSCKELDDI-AHCAQ 202
KGVV +F + EV+ + LDD+ A CAQ
Sbjct: 111 KGVVPLFGSEDEVTTQGLDDLAARCAQ 137
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 187 YEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALV 225
YE SC E+D I A S G G R+T C + LV
Sbjct: 461 YECSCPEIDKICSIALS-NGSYGSRLTGAGWGGCTVHLV 498
>pdb|1LFK|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
pdb|1LG9|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
pdb|1LGF|A Chain A, Crystal Structure Of Oxyb, A Cytochrome P450 Implicated In
An Oxidative Phenol Coupling Reaction During Vancomycin
Biosynthesis
Length = 398
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 163 QKLTPG-----APKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMT 213
+KLTPG + A Y++ +V+ D+ E + D IA A +PG + C +
Sbjct: 101 RKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELV 156
>pdb|3GFX|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFX|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFY|A Chain A, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFY|B Chain B, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFZ|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GFZ|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GG0|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG0|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG1|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
pdb|3GG1|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
Length = 413
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 56 ALLEKIQPEMISLDPQVITEVHVPTLKEKIEA 87
+LL + QP+ I +D +++ ++H+ K+ I A
Sbjct: 320 SLLTRFQPDKIKVDAELVRDIHISGTKQAIVA 351
>pdb|1VRA|B Chain B, Crystal Structure Of Arginine Biosynthesis Bifunctional
Protein Argj (10175521) From Bacillus Halodurans At 2.00
A Resolution
Length = 215
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 138 NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKEL 194
N+I + D++ D + + + + LTP P WAN+ K + +++C++L
Sbjct: 30 NRITVDGDTSTNDXVVVXASGLAENETLTPEHPDWANFYKAL--------QLACEDL 78
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 97 GFALQFHFKPWWFNELQIFRSKYHKQCL 124
GF L FHF P F + YH +C+
Sbjct: 123 GFILSFHFAPNPFFSNSVLTKTYHMKCV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,359,468
Number of Sequences: 62578
Number of extensions: 333331
Number of successful extensions: 767
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 15
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)