Query psy8462
Match_columns 271
No_of_seqs 285 out of 1299
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08149 BING4CT: BING4CT (NUC 100.0 4.1E-32 8.9E-37 207.6 5.1 53 18-70 28-80 (80)
2 KOG1272|consensus 99.9 3.5E-28 7.5E-33 234.9 5.5 89 18-107 398-486 (545)
3 COG0153 GalK Galactokinase [Ca 99.9 3.8E-23 8.2E-28 197.9 7.3 118 136-261 270-389 (390)
4 PTZ00290 galactokinase; Provis 99.9 6.5E-23 1.4E-27 201.8 8.4 129 136-267 330-462 (468)
5 PLN02865 galactokinase 99.8 2.2E-21 4.9E-26 188.9 7.5 117 137-261 298-423 (423)
6 PLN02521 galactokinase 99.8 6.4E-21 1.4E-25 189.0 7.4 122 136-263 362-496 (497)
7 PRK05101 galactokinase; Provis 99.8 1.6E-20 3.5E-25 180.1 6.8 90 172-261 290-382 (382)
8 PRK00555 galactokinase; Provis 99.8 4.4E-19 9.5E-24 169.3 7.2 89 172-261 272-362 (363)
9 TIGR00131 gal_kin galactokinas 99.8 3.1E-19 6.7E-24 170.8 5.9 89 172-260 295-385 (386)
10 PRK05322 galactokinase; Provis 99.7 2.1E-18 4.5E-23 165.9 7.1 90 172-261 296-387 (387)
11 COG2605 Predicted kinase relat 99.7 3.3E-17 7.1E-22 152.4 7.5 140 100-241 163-314 (333)
12 PRK03817 galactokinase; Provis 99.7 1.1E-16 2.5E-21 151.1 9.9 89 172-261 260-350 (351)
13 KOG0631|consensus 99.7 3.1E-17 6.6E-22 160.3 5.6 123 137-262 357-488 (489)
14 COG1577 ERG12 Mevalonate kinas 99.5 1.2E-14 2.7E-19 136.7 7.9 112 125-239 172-294 (307)
15 PLN02677 mevalonate kinase 99.5 6E-14 1.3E-18 135.6 10.5 131 121-261 227-382 (387)
16 PRK13412 fkp bifunctional fuco 99.5 6E-14 1.3E-18 147.9 10.2 132 125-261 827-972 (974)
17 KOG1511|consensus 99.5 2E-13 4.4E-18 129.6 9.7 177 80-265 183-384 (397)
18 TIGR01220 Pmev_kin_Gr_pos phos 99.4 7.1E-13 1.5E-17 126.5 8.4 117 121-241 213-346 (358)
19 PRK03926 mevalonate kinase; Pr 99.4 2.3E-12 5.1E-17 118.8 11.2 133 122-263 157-301 (302)
20 TIGR00549 mevalon_kin mevalona 99.3 1.8E-12 3.8E-17 117.5 5.9 99 122-224 164-273 (273)
21 PTZ00298 mevalonate kinase; Pr 99.3 1.1E-11 2.5E-16 116.5 9.3 119 122-244 183-313 (328)
22 PF08544 GHMP_kinases_C: GHMP 99.0 2.8E-10 6E-15 85.6 5.2 70 172-242 13-84 (85)
23 PLN02451 homoserine kinase 98.2 5.2E-06 1.1E-10 80.1 8.9 89 173-264 270-368 (370)
24 PRK01212 homoserine kinase; Pr 98.2 8.3E-06 1.8E-10 75.4 8.8 83 175-260 212-300 (301)
25 PRK00128 ipk 4-diphosphocytidy 98.0 1.9E-05 4.1E-10 72.6 7.8 74 174-255 204-282 (286)
26 TIGR00191 thrB homoserine kina 98.0 1.6E-05 3.4E-10 74.1 6.7 68 189-260 231-301 (302)
27 TIGR01219 Pmev_kin_ERG8 phosph 97.8 8.6E-05 1.9E-09 73.8 8.6 53 186-238 376-430 (454)
28 PRK14614 4-diphosphocytidyl-2- 97.8 9.8E-05 2.1E-09 68.3 8.4 49 190-241 221-270 (280)
29 TIGR01920 Shik_kin_archae shik 97.8 3.9E-05 8.5E-10 70.5 5.4 60 173-241 196-255 (261)
30 PRK01123 shikimate kinase; Pro 97.7 0.00029 6.2E-09 65.2 9.5 76 172-260 205-281 (282)
31 PRK03188 4-diphosphocytidyl-2- 97.5 0.00021 4.7E-09 66.3 6.8 84 173-262 207-296 (300)
32 PRK02534 4-diphosphocytidyl-2- 97.0 0.0042 9.2E-08 58.1 9.8 75 182-260 233-310 (312)
33 PRK14615 4-diphosphocytidyl-2- 97.0 0.00092 2E-08 62.5 5.3 49 190-241 239-288 (296)
34 TIGR00154 ispE 4-diphosphocyti 97.0 0.0024 5.3E-08 59.6 7.4 49 190-241 226-275 (293)
35 PRK14612 4-diphosphocytidyl-2- 96.5 0.0034 7.3E-08 57.9 4.5 56 183-241 209-265 (276)
36 PRK14608 4-diphosphocytidyl-2- 96.4 0.0084 1.8E-07 55.9 6.9 49 190-241 229-279 (290)
37 PRK14613 4-diphosphocytidyl-2- 96.4 0.0045 9.8E-08 58.0 5.0 50 191-243 239-289 (297)
38 PTZ00299 homoserine kinase; Pr 96.1 0.012 2.7E-07 56.4 6.3 78 183-263 231-324 (336)
39 PRK14609 4-diphosphocytidyl-2- 95.6 0.01 2.2E-07 54.9 3.4 45 180-227 208-252 (269)
40 PRK14616 4-diphosphocytidyl-2- 95.4 0.02 4.3E-07 53.1 4.7 50 191-243 226-276 (287)
41 COG0083 ThrB Homoserine kinase 94.4 0.16 3.4E-06 48.4 7.6 69 191-262 229-298 (299)
42 KOG4644|consensus 94.3 0.037 7.9E-07 56.3 3.4 126 110-239 779-920 (948)
43 PRK14610 4-diphosphocytidyl-2- 92.6 0.28 6.1E-06 45.6 6.1 49 191-241 222-271 (283)
44 COG1907 Predicted archaeal sug 92.0 1 2.2E-05 43.0 8.9 86 172-261 219-311 (312)
45 TIGR00144 beta_RFAP_syn beta-R 88.4 2.2 4.8E-05 40.6 8.1 82 173-260 231-323 (324)
46 PRK14611 4-diphosphocytidyl-2- 67.5 31 0.00066 31.8 8.2 43 189-237 220-262 (275)
47 KOG1537|consensus 67.2 13 0.00028 35.5 5.6 67 191-260 282-352 (355)
48 COG1947 IspE 4-diphosphocytidy 61.6 13 0.00028 35.4 4.6 49 190-241 224-273 (289)
49 COG1685 Archaeal shikimate kin 60.4 26 0.00057 33.2 6.3 72 175-261 204-276 (278)
50 PRK00343 ipk 4-diphosphocytidy 56.2 20 0.00043 33.2 4.8 47 190-241 216-263 (271)
51 PRK00650 4-diphosphocytidyl-2- 53.7 22 0.00048 33.6 4.7 49 190-241 205-258 (288)
52 COG3890 ERG8 Phosphomevalonate 52.9 1.2E+02 0.0025 29.4 9.3 59 195-261 275-333 (337)
53 PF12220 U1snRNP70_N: U1 small 51.2 9.2 0.0002 30.1 1.5 47 13-61 31-77 (94)
54 PF03460 NIR_SIR_ferr: Nitrite 48.6 41 0.00088 24.1 4.5 48 189-239 21-68 (69)
55 PF00543 P-II: Nitrogen regula 44.3 65 0.0014 25.1 5.4 67 191-258 7-97 (102)
56 KOG4519|consensus 35.7 1.4E+02 0.0031 29.6 7.2 72 187-262 378-451 (459)
57 PF03491 5HT_transporter: Sero 34.5 26 0.00057 24.0 1.4 26 7-32 1-35 (42)
58 PRK05905 hypothetical protein; 21.8 1.2E+02 0.0027 28.1 4.0 27 190-218 222-248 (258)
No 1
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=99.97 E-value=4.1e-32 Score=207.61 Aligned_cols=53 Identities=64% Similarity=0.973 Sum_probs=51.7
Q ss_pred CCCCcceeEecCCCCCCCcccCCCCCCChHHHhHHHHHHHHhhcCCCceeeCC
Q psy8462 18 PQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDP 70 (271)
Q Consensus 18 ~~~~~~s~~vpg~g~~~~d~~~~np~~~~~~r~e~ev~~ll~k~~~~~i~l~~ 70 (271)
.+.|||||||||||||||||+|+|||||+|||||+|||+||||||||||+|||
T Consensus 28 h~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP 80 (80)
T PF08149_consen 28 HSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP 80 (80)
T ss_pred ccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence 46899999999999999999999999999999999999999999999999998
No 2
>KOG1272|consensus
Probab=99.94 E-value=3.5e-28 Score=234.87 Aligned_cols=89 Identities=48% Similarity=0.663 Sum_probs=79.7
Q ss_pred CCCCcceeEecCCCCCCCcccCCCCCCChHHHhHHHHHHHHhhcCCCceeeCCCCccccccccHHHHHHHHhhccccCCC
Q psy8462 18 PQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPG 97 (271)
Q Consensus 18 ~~~~~~s~~vpg~g~~~~d~~~~np~~~~~~r~e~ev~~ll~k~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (271)
-..||+|||||||||||||++|+|||+|+|||||+|||+||||||||||||||+.||.||.++.++++++..++++.+|.
T Consensus 398 H~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElIsLdp~~i~~vd~~~~~~~k~e~~~~~~~~~~ 477 (545)
T KOG1272|consen 398 HAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELISLDPRVIGIVDEPSLEEKKDEIERLFEEKPP 477 (545)
T ss_pred ccCCceeEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhEEechhhccccCcccchhhHHHHHHHhcccCc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999887775
Q ss_pred cccccccCCC
Q psy8462 98 FALQFHFKPW 107 (271)
Q Consensus 98 ~~~~F~f~p~ 107 (271)
.+ ++.++..
T Consensus 478 ~~-~~~pr~K 486 (545)
T KOG1272|consen 478 EA-GALPRHK 486 (545)
T ss_pred cc-ccCchhh
Confidence 43 3443333
No 3
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.8e-23 Score=197.91 Aligned_cols=118 Identities=31% Similarity=0.512 Sum_probs=103.4
Q ss_pred CccchhhhhhhhhcCCCCccccchhHHhhhccchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecC
Q psy8462 136 NSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGG 215 (271)
Q Consensus 136 ~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGa 215 (271)
..|+.|++.|+.|+.+...++. ..+...+|++|+++|++|+++|+|||||||+|+++|....|++|||||||
T Consensus 270 ~rRa~hvv~En~Rvl~a~~Al~--------~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGa 341 (390)
T COG0153 270 ARRARHVVTENQRVLEAAKALR--------SGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGA 341 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCC
Confidence 3467799999988876444332 12345589999999999999999999999999999987678899999999
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeEEEEecCCCeEEE
Q psy8462 216 GFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTFFVSDAYQGATHV 261 (271)
Q Consensus 216 G~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~~~~~p~~Ga~~~ 261 (271)
|||||+|+||+.+.++++++++.+.|++++ ++.+|++++++|++++
T Consensus 342 GfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 342 GFGGCVIALVPNDDVEAVAEAVAEEYEKVTGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred CCCceEEEEechhhHHHHHHHHHHhHHhhcCccccEEEEeccCCcccc
Confidence 999999999999999999999999999988 8899999999999976
No 4
>PTZ00290 galactokinase; Provisional
Probab=99.88 E-value=6.5e-23 Score=201.75 Aligned_cols=129 Identities=25% Similarity=0.311 Sum_probs=110.5
Q ss_pred CccchhhhhhhhhcCCCCccccchhHHhhhcc--chhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeee
Q psy8462 136 NSNQIHLHSDSARADKPTDISFDIPKVQKLTP--GAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMT 213 (271)
Q Consensus 136 ~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~--~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKlt 213 (271)
..|+.||++|+.|+.++..++.. ...+.+ +...++.+|+++|.+|+++|+|||||||.|++++.+..|++|||||
T Consensus 330 ~~Ra~HVitEn~RV~~a~~al~~---~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlT 406 (468)
T PTZ00290 330 FERGTYNIMEQIRTLEFIKLNDP---ELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMM 406 (468)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh---hhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEe
Confidence 34778999999999887665531 112222 2344899999999999999999999999999987554799999999
Q ss_pred cCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeEEEEecCCCeEEEeccCCC
Q psy8462 214 GGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTFFVSDAYQGATHVSLEDWP 267 (271)
Q Consensus 214 GaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~~~~~p~~Ga~~~~~~~~~ 267 (271)
|||||||+|+||+++..+++++++.+.|.+++ .+.+|++.|++|++++.++.|.
T Consensus 407 GaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~~Ga~~~~~~~~~ 462 (468)
T PTZ00290 407 GGGFGGCIILLLKKNAVDRVVAHVREKFKARFGVENDVYPVVAGDGAFVVSLKNWS 462 (468)
T ss_pred cCCCceEEEEEechhhHHHHHHHHHHHHHHhhCCCCcEEEEecCCCcEEEeecccc
Confidence 99999999999999999999999999998887 7899999999999999998885
No 5
>PLN02865 galactokinase
Probab=99.84 E-value=2.2e-21 Score=188.89 Aligned_cols=117 Identities=20% Similarity=0.339 Sum_probs=100.7
Q ss_pred ccchhhhhhhhhcCCCCccccchhHHhhhccchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCC
Q psy8462 137 SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 216 (271)
Q Consensus 137 ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG 216 (271)
.|+.|+++|+.|+.+..+++.. .+...++.+|+++|.+|+++|+|||||+|.|++.|++..|++||||||||
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~--------~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgG 369 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWAS--------GNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAG 369 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 4677888888888664443321 23344899999999999999999999999999999985699999999999
Q ss_pred CceEEEEEecCCCHHHHHHHHHHhcccC-------C--CCeEEEEecCCCeEEE
Q psy8462 217 FGGCAIALVHTDHVNDIIAKVKAHCVSN-------P--TPTFFVSDAYQGATHV 261 (271)
Q Consensus 217 ~GG~viaLv~~~~~~~v~eal~~~y~~~-------~--~~~~~~~~p~~Ga~~~ 261 (271)
||||+++||+.+.+++++++|.+.|+++ + ++.+|+++|++|++++
T Consensus 370 fGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 370 FRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred CccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999999974 2 7789999999999864
No 6
>PLN02521 galactokinase
Probab=99.83 E-value=6.4e-21 Score=188.97 Aligned_cols=122 Identities=27% Similarity=0.450 Sum_probs=105.7
Q ss_pred CccchhhhhhhhhcCCCCccccchhHHhhhccc--hhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeee
Q psy8462 136 NSNQIHLHSDSARADKPTDISFDIPKVQKLTPG--APKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMT 213 (271)
Q Consensus 136 ~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~--a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKlt 213 (271)
..|+.|+++|+.|+.++.+++.. .+.++ ...|+.+|+++|.+|+++|+||||+||.|+++|++ +|++|||||
T Consensus 362 ~~Ra~Hvv~E~~RV~~~~~al~~-----~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRlt 435 (497)
T PLN02521 362 HQRAVHVYSEAKRVHAFRDTVSS-----SLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLT 435 (497)
T ss_pred hhhhhheecHHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEEC
Confidence 45788999999999887666432 12121 34489999999999999999999999999999999 799999999
Q ss_pred cCCCceEEEEEecCCCHHHHHHHHHHhcccC---------C--CCeEEEEecCCCeEEEec
Q psy8462 214 GGGFGGCAIALVHTDHVNDIIAKVKAHCVSN---------P--TPTFFVSDAYQGATHVSL 263 (271)
Q Consensus 214 GaG~GG~viaLv~~~~~~~v~eal~~~y~~~---------~--~~~~~~~~p~~Ga~~~~~ 263 (271)
|||||||+|+||+++..+++++++.+.|+++ + .+.+|+++|++||+++.+
T Consensus 436 GaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 436 GAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred CCCCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEeec
Confidence 9999999999999999999999999999986 1 679999999999998653
No 7
>PRK05101 galactokinase; Provisional
Probab=99.81 E-value=1.6e-20 Score=180.12 Aligned_cols=90 Identities=31% Similarity=0.579 Sum_probs=83.3
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCc-ceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCe
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVL-GCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPT 248 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~Gal-GaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~ 248 (271)
|+++|+++|.+|+++|+||||+||.|+++|++..|++ ||||||||||||+|+|++++.++++++++.+.|++++ .+.
T Consensus 290 lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~~~~~ 369 (382)
T PRK05101 290 MGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGLKET 369 (382)
T ss_pred HHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhCCCCe
Confidence 6889999999999899999999999999999944985 7799999999999999999999999999999999877 788
Q ss_pred EEEEecCCCeEEE
Q psy8462 249 FFVSDAYQGATHV 261 (271)
Q Consensus 249 ~~~~~p~~Ga~~~ 261 (271)
+|+++|++|++++
T Consensus 370 ~~~~~~~~Ga~~~ 382 (382)
T PRK05101 370 FYVCKASQGAGQC 382 (382)
T ss_pred EEEEecCCCcccC
Confidence 9999999999874
No 8
>PRK00555 galactokinase; Provisional
Probab=99.77 E-value=4.4e-19 Score=169.31 Aligned_cols=89 Identities=36% Similarity=0.597 Sum_probs=84.4
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTF 249 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~ 249 (271)
|+..|+++|++|+++++||||++|.|++.|++ +|++|+||||||||||+++|++.+..+++.+++.+.|++++ .+.+
T Consensus 272 lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~-~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~ 350 (363)
T PRK00555 272 AGQLLTASHASMRDDFEITTERIDLIADSAVR-AGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGYPEPAV 350 (363)
T ss_pred HHHHHHHhhHHHHhhcCCCChhHHHHHHHHHh-cCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccCCCCcE
Confidence 57889999999999999999999999999999 89999999999999999999999989999999999999887 8899
Q ss_pred EEEecCCCeEEE
Q psy8462 250 FVSDAYQGATHV 261 (271)
Q Consensus 250 ~~~~p~~Ga~~~ 261 (271)
|+++|++|++++
T Consensus 351 ~~~~~~~g~~~~ 362 (363)
T PRK00555 351 SRTYAAPGAGEC 362 (363)
T ss_pred EEEecCCCcccC
Confidence 999999999976
No 9
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.77 E-value=3.1e-19 Score=170.84 Aligned_cols=89 Identities=31% Similarity=0.588 Sum_probs=80.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTF 249 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~ 249 (271)
|+.+|++.|.+|++.|++|||++|.+++.|...+||+||||||||||||+|+||+++.++++++++.+.|++.+ .+.+
T Consensus 295 lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~~~~~~~~ 374 (386)
T TIGR00131 295 FGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKKTGLELTF 374 (386)
T ss_pred HHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 68899999999998899999999999987643389999999999999999999999999999999999997665 7889
Q ss_pred EEEecCCCeEE
Q psy8462 250 FVSDAYQGATH 260 (271)
Q Consensus 250 ~~~~p~~Ga~~ 260 (271)
|++.+++|++.
T Consensus 375 ~~~~~~~Ga~~ 385 (386)
T TIGR00131 375 YVIVSKPGAGS 385 (386)
T ss_pred EEEEECCCcCC
Confidence 99999999875
No 10
>PRK05322 galactokinase; Provisional
Probab=99.74 E-value=2.1e-18 Score=165.90 Aligned_cols=90 Identities=37% Similarity=0.622 Sum_probs=83.6
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTF 249 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~ 249 (271)
|+.+|++.|.+|++.|++|+|++|.|++.|++..|++|+||||||+|||+|+|++.+..+++.++|.+.|++++ .+.+
T Consensus 296 lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~ 375 (387)
T PRK05322 296 FGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIGYAASF 375 (387)
T ss_pred HHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 57789999999999999999999999999974379999999999999999999999999999999999999887 8899
Q ss_pred EEEecCCCeEEE
Q psy8462 250 FVSDAYQGATHV 261 (271)
Q Consensus 250 ~~~~p~~Ga~~~ 261 (271)
|+++|++|++++
T Consensus 376 ~~~~~~~Ga~~~ 387 (387)
T PRK05322 376 YVAEIGDGAREL 387 (387)
T ss_pred EEEecCCCcccC
Confidence 999999999864
No 11
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.69 E-value=3.3e-17 Score=152.36 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=117.4
Q ss_pred cccccCCCcccchhhhccccCCCCC--CeEEEEcCCccCccchhhhhhhhhcCCCCccccchhHHhhhccchhh--HHhh
Q psy8462 100 LQFHFKPWWFNELQIFRSKYHKQCL--PVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPK--WANY 175 (271)
Q Consensus 100 ~~F~f~p~~~~~l~i~~s~~~k~~L--~Lll~~tG~~r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~--lg~~ 175 (271)
++|..++.| -+.|+-+.+.+-.+| ++++.|||..|.++.++.-+..+-.++-.+..+.++.|++++.+..+ +.++
T Consensus 163 MEf~~~~~V-~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~al~~nd 241 (333)
T COG2605 163 MEFRGNGEV-VVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVRND 241 (333)
T ss_pred EEEcCCCcE-EEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356667765 667777777777777 99999999999999887666555555544445568899999888877 4889
Q ss_pred HHHHHhhhcc--------cccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhc
Q psy8462 176 VKGVVSIFND--------DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHC 241 (271)
Q Consensus 176 l~~~g~lL~~--------~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y 241 (271)
+.+++++|+. +-+||++.||.|++.|++ +||+|||++|||+||+++.+|++.+...+++++...-
T Consensus 242 ~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~~ 314 (333)
T COG2605 242 IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEKEQ 314 (333)
T ss_pred hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEEeCccchHHHHHHHHHhc
Confidence 9999999975 668999999999999999 9999999999999999999999999999999998764
No 12
>PRK03817 galactokinase; Provisional
Probab=99.68 E-value=1.1e-16 Score=151.13 Aligned_cols=89 Identities=33% Similarity=0.541 Sum_probs=81.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTF 249 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~ 249 (271)
+++.|+++|.+|++.|++|+|++|.|++.|++ +|++|+||+|||||||+++|++++..+++++++.+.|.+.+ .+.+
T Consensus 260 lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (351)
T PRK03817 260 LGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKRFGIDPKY 338 (351)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 57788888888998899999999999999999 79999999999999999999999999999999999886655 7789
Q ss_pred EEEecCCCeEEE
Q psy8462 250 FVSDAYQGATHV 261 (271)
Q Consensus 250 ~~~~p~~Ga~~~ 261 (271)
|++.+++|++++
T Consensus 339 ~~~~~~~G~~~~ 350 (351)
T PRK03817 339 FVVESSDGVRKI 350 (351)
T ss_pred EEEecCCCceeC
Confidence 999999999975
No 13
>KOG0631|consensus
Probab=99.68 E-value=3.1e-17 Score=160.34 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=103.0
Q ss_pred ccchhhhhhhhhcCCCCccccchhHHhhhccchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCC
Q psy8462 137 SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 216 (271)
Q Consensus 137 ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG 216 (271)
.++.||+++..|+.++..++..- -.+......++|.+|+++|++++.+|++||||+|+|+++|++ +|++|+|+||||
T Consensus 357 ~rakHv~sea~rv~q~~~~~~~a--~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTGaG 433 (489)
T KOG0631|consen 357 QRAKHVYSEALRVLQEEKLCARA--PGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTGAG 433 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--ccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeeccc
Confidence 45789999999998877776531 111112234478999999999999999999999999999999 899999999999
Q ss_pred CceEEEEEecCCCHHHHHHHHHHhcccCC---------CCeEEEEecCCCeEEEe
Q psy8462 217 FGGCAIALVHTDHVNDIIAKVKAHCVSNP---------TPTFFVSDAYQGATHVS 262 (271)
Q Consensus 217 ~GG~viaLv~~~~~~~v~eal~~~y~~~~---------~~~~~~~~p~~Ga~~~~ 262 (271)
||||++++++.+..+.+.+++.+.||++. +..++++.|+.|+.++.
T Consensus 434 wGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~~k~~~~~skp~~g~~l~e 488 (489)
T KOG0631|consen 434 WGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDELKKALIVSKPAAGVLLLE 488 (489)
T ss_pred cccceeeeccccchHHHHHhhhhhhhccccchhhhchhhceEEEecCchhhhhcc
Confidence 99999999999999999999999998765 45678888888888764
No 14
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.54 E-value=1.2e-14 Score=136.65 Aligned_cols=112 Identities=22% Similarity=0.370 Sum_probs=78.6
Q ss_pred CeEEEEcCCccCccchhhhhhh-hhcCCCCccccc-hhHHhhhccchhh-H-HhhHHHHHhhhc------ccccCCchhH
Q psy8462 125 PVVTVLLGSRNNSNQIHLHSDS-ARADKPTDISFD-IPKVQKLTPGAPK-W-ANYVKGVVSIFN------DDYEVSCKEL 194 (271)
Q Consensus 125 ~Lll~~tG~~r~ssai~vv~e~-~r~~~~~~l~~~-i~~i~~L~~~a~~-l-g~~l~~~g~lL~------~~~~VS~pei 194 (271)
.+++.+||.+..++ ++++.. .+.++..+.... ++++++++.++.. + .++.+.++++|+ +.+|||+|++
T Consensus 172 ~~~I~~tg~~~sT~--e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~LgVs~~~L 249 (307)
T COG1577 172 TLVIGDTGVPGSTK--ELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPEL 249 (307)
T ss_pred eEEEEEcCCcCcHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcCcHHH
Confidence 48899999998777 445443 332233333333 7788888887766 3 334444444433 2689999999
Q ss_pred HHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHH
Q psy8462 195 DDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKA 239 (271)
Q Consensus 195 D~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~ 239 (271)
|+|++.|++ +|++|||+||||+|||+|+|+++. .++.+.+.+.+
T Consensus 250 ~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~~ 294 (307)
T COG1577 250 DELVEAARS-LGALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEK 294 (307)
T ss_pred HHHHHHHHh-cCccccccccCCCCceEEEEeccchHHHHHHHHHHh
Confidence 999999999 899999999999999999999862 23334444433
No 15
>PLN02677 mevalonate kinase
Probab=99.51 E-value=6e-14 Score=135.64 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=90.9
Q ss_pred CCCCCeEEEEcCCccCccchhhhhh-hhhcCCCCccccc-hhHHhhhccchhh-H-----------------HhhHHHHH
Q psy8462 121 KQCLPVVTVLLGSRNNSNQIHLHSD-SARADKPTDISFD-IPKVQKLTPGAPK-W-----------------ANYVKGVV 180 (271)
Q Consensus 121 k~~L~Lll~~tG~~r~ssai~vv~e-~~r~~~~~~l~~~-i~~i~~L~~~a~~-l-----------------g~~l~~~g 180 (271)
+..+++++++||.+++|+. .|+. ..+..+....... ++.++++++++.+ | +++|+..|
T Consensus 227 ~~~l~llv~dTgv~~sT~~--lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~ 304 (387)
T PLN02677 227 NMPLKMLITNTRVGRNTKA--LVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQ 304 (387)
T ss_pred CCCceEEEEECCCCCcHHH--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHH
Confidence 3457899999999998774 3432 3333333333322 4566666666544 3 33444444
Q ss_pred hhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC----CHHHHHHHHHHhcccCCCCeEEEEec-C
Q psy8462 181 SIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD----HVNDIIAKVKAHCVSNPTPTFFVSDA-Y 255 (271)
Q Consensus 181 ~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~----~~~~v~eal~~~y~~~~~~~~~~~~p-~ 255 (271)
.+|+ .+|||+|+||.++++|++ .| +|||+||||+|||+|+|++++ ..+++++++++..+ ..|.+.. +
T Consensus 305 ~LL~-~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~-----~~~~~~~g~ 376 (387)
T PLN02677 305 GLLQ-CMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGF-----QCFTAGIGG 376 (387)
T ss_pred HHHH-HcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCC-----eEEEEEeCC
Confidence 4555 699999999999999999 54 799999999999999999852 45667788877764 3455554 7
Q ss_pred CCeEEE
Q psy8462 256 QGATHV 261 (271)
Q Consensus 256 ~Ga~~~ 261 (271)
.|+++.
T Consensus 377 ~Gv~~~ 382 (387)
T PLN02677 377 NGVQIC 382 (387)
T ss_pred CceEEE
Confidence 788765
No 16
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.50 E-value=6e-14 Score=147.91 Aligned_cols=132 Identities=10% Similarity=0.070 Sum_probs=92.7
Q ss_pred CeEEEEcCCccCccchhhhhh-hhhc-CCCCccccchhHHhhhccchhh-H-HhhHHHHHhhhcc------cc--cCCch
Q psy8462 125 PVVTVLLGSRNNSNQIHLHSD-SARA-DKPTDISFDIPKVQKLTPGAPK-W-ANYVKGVVSIFND------DY--EVSCK 192 (271)
Q Consensus 125 ~Lll~~tG~~r~ssai~vv~e-~~r~-~~~~~l~~~i~~i~~L~~~a~~-l-g~~l~~~g~lL~~------~~--~VS~p 192 (271)
.++++|||.+|.++.+ +++ .++. .........+++|++++.++.+ | .+++.++|++|+. .+ +||+|
T Consensus 827 ~LlL~yTGitR~T~~i--V~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp 904 (974)
T PRK13412 827 CHLLYYTGITRTAKGI--LAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPA 904 (974)
T ss_pred cEEEEECCCeeeHHHH--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 6999999999988754 332 2222 2222222236788999888777 5 4577777777663 44 99999
Q ss_pred hHHHHHHHHHcCCCCcceeeecCCCceEEEEEec-CCCHHHHHHHHHHhcccCCCCeEEEEec-CCCeEEE
Q psy8462 193 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVH-TDHVNDIIAKVKAHCVSNPTPTFFVSDA-YQGATHV 261 (271)
Q Consensus 193 eiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~-~~~~~~v~eal~~~y~~~~~~~~~~~~p-~~Ga~~~ 261 (271)
+||.|++.|+. ||+|||+||||+|||+|++++ ++.++++.+++++.-...+ ..+..+.. ..|+++.
T Consensus 905 ~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~~~~~~~-~~~~~~~l~~~G~~is 972 (974)
T PRK13412 905 AVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTENAPNPR-ARFVDMSLSDKGLQVS 972 (974)
T ss_pred HHHHHHHHHHc--CCcEEEecccCcccEEEEEECChhhHHHHHHHHHhcccCCc-eeEEEEEECCCCeEEe
Confidence 99999999965 799999999999999999994 5677788888877533321 12223433 5677654
No 17
>KOG1511|consensus
Probab=99.46 E-value=2e-13 Score=129.63 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=122.2
Q ss_pred cHHHHHHHHhhccccCCCccc--------ccccCCCcccchhhhccccCCCCCCeEEEEcCCccCccchhhhhhhhhcCC
Q psy8462 80 TLKEKIEARNKLLVSNPGFAL--------QFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADK 151 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--------~F~f~p~~~~~l~i~~s~~~k~~L~Lll~~tG~~r~ssai~vv~e~~r~~~ 151 (271)
..+.|--+-.+.+|.+|---- -..|++ =..|.+..+.+.|++++++|-.+|++.++ |-.+..+.++
T Consensus 183 Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~i~f~k-----g~~~~~Lk~~~~L~illtnTrv~RnTk~l-Va~Vr~~~~k 256 (397)
T KOG1511|consen 183 LINKWAFEGEKCIHGTPSGIDNAVCTYGGLISFKK-----GVEIESLKHLPPLRILLTNTRVPRNTKAL-VAGVRELLEK 256 (397)
T ss_pred HHHHHHhccceeecCCCcccchhhhccCceEEeec-----CccceecccCCCceEEEEccccCccHHHH-HHHHHHHHHh
Confidence 345566666667776663110 011111 12556677888999999999999988855 2234566688
Q ss_pred CCccccc-hhHHhhhccchhh-HHh--h---H--H-HHHhh------hcccccCCchhHHHHHHHHHcCCCCcceeeecC
Q psy8462 152 PTDISFD-IPKVQKLTPGAPK-WAN--Y---V--K-GVVSI------FNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGG 215 (271)
Q Consensus 152 ~~~l~~~-i~~i~~L~~~a~~-lg~--~---l--~-~~g~l------L~~~~~VS~peiD~Lv~~A~~~~GalGaKltGa 215 (271)
|.+++.. +++|++++.++.. +.+ + . + .+.++ |-+++|||+|.+|.++..+++ .| +++|||||
T Consensus 257 fPevi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH~~le~v~~~t~k-~g-i~sKLTGA 334 (397)
T KOG1511|consen 257 FPEVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDALGVSHPSLELVCTTTRK-LG-IHSKLTGA 334 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCCcHHHHHHHHHHHH-hC-cceecccC
Confidence 8888766 6778877776655 321 0 0 1 13333 335899999999999999999 57 68899999
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEec-CCCeEEEeccC
Q psy8462 216 GFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDA-YQGATHVSLED 265 (271)
Q Consensus 216 G~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p-~~Ga~~~~~~~ 265 (271)
|+|||+|+|++++...+.++.+++..... ...+|.+.. +.|+++.+..+
T Consensus 335 GgGGc~itlL~~~~~qe~i~~~ke~L~s~-gf~v~~t~lGG~G~~v~s~~~ 384 (397)
T KOG1511|consen 335 GGGGCVITLLKPGTEQEQIDKWKEELESH-GFEVFETELGGPGVSVHSADD 384 (397)
T ss_pred CCCceEEEEECCCCchHHHHHHHHHHHhc-CcceeeccCCCCceEEEecch
Confidence 99999999999987667776666655544 245666655 77999988775
No 18
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.39 E-value=7.1e-13 Score=126.45 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcCCccCccchhhhh-hhhhcCCCCccccc-hhHHhhhccchhh---------HHhhHHHHHhhhcc----
Q psy8462 121 KQCLPVVTVLLGSRNNSNQIHLHS-DSARADKPTDISFD-IPKVQKLTPGAPK---------WANYVKGVVSIFND---- 185 (271)
Q Consensus 121 k~~L~Lll~~tG~~r~ssai~vv~-e~~r~~~~~~l~~~-i~~i~~L~~~a~~---------lg~~l~~~g~lL~~---- 185 (271)
+..+++++++||.++.|+.. ++ ...+..+..+.... +++++++++++.+ +++.|+..+.+|+.
T Consensus 213 ~~~~~l~v~~tg~~~~T~~~--v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~ 290 (358)
T TIGR01220 213 PKGLTLLIGWTGSPASTASL--VSDVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDE 290 (358)
T ss_pred CCCCEEEEEeCCCCcCcHHH--HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcc
Confidence 34678999999999887743 32 22232232222222 4667777666555 34455555566654
Q ss_pred -cccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhc
Q psy8462 186 -DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241 (271)
Q Consensus 186 -~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y 241 (271)
.++||+|++|.|++.|++ .|+ |||++|||+|||+|+|+++ ...+++.++++++.
T Consensus 291 ~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G 346 (358)
T TIGR01220 291 VGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWETAG 346 (358)
T ss_pred cCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCC
Confidence 249999999999999999 798 9999999999999999975 45566778887654
No 19
>PRK03926 mevalonate kinase; Provisional
Probab=99.39 E-value=2.3e-12 Score=118.82 Aligned_cols=133 Identities=18% Similarity=0.320 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCccCccchhhhhhhh-hcCCCCcccc-chhHHhhhccchhh---------HHhhHHHHHhhhcccccCC
Q psy8462 122 QCLPVVTVLLGSRNNSNQIHLHSDSA-RADKPTDISF-DIPKVQKLTPGAPK---------WANYVKGVVSIFNDDYEVS 190 (271)
Q Consensus 122 ~~L~Lll~~tG~~r~ssai~vv~e~~-r~~~~~~l~~-~i~~i~~L~~~a~~---------lg~~l~~~g~lL~~~~~VS 190 (271)
..+.++++++|.++.|+.. +.... ......+... .++.+..++..+.. ++..|+..+.++ +.++++
T Consensus 157 ~~~~~vl~~~~~~~sT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~-~~~~~~ 233 (302)
T PRK03926 157 PECGIVVGYTGSSGSTKEL--VANVRKLKEEYPELIEPILSSIGKISEKGEELILSGDYVSLGELMNINQGLL-DALGVS 233 (302)
T ss_pred CCceEEEEECCCCCcHHHH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCC
Confidence 3567888999988876642 22111 0111111111 12223333333222 344555555444 568999
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEec-CCCeEEEec
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDA-YQGATHVSL 263 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p-~~Ga~~~~~ 263 (271)
+|+++.+++.+++ .|++|+||+|+|+|||++++++++..+++++++.+.+ ..++++.+ .+|+.+..+
T Consensus 234 ~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~G~~i~~~ 301 (302)
T PRK03926 234 TKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIAG-----GKPIITKITDEGLRIEEV 301 (302)
T ss_pred CHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhcC-----CeEEEEecCCCeeEEEec
Confidence 9999999999999 7999999999999999999999888889999998754 36788888 569888643
No 20
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.32 E-value=1.8e-12 Score=117.53 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCccCccchhhhhh-hhhcCCCCcccc-chhHHhhhccchh---------hHHhhHHHHHhhhcccccCC
Q psy8462 122 QCLPVVTVLLGSRNNSNQIHLHSD-SARADKPTDISF-DIPKVQKLTPGAP---------KWANYVKGVVSIFNDDYEVS 190 (271)
Q Consensus 122 ~~L~Lll~~tG~~r~ssai~vv~e-~~r~~~~~~l~~-~i~~i~~L~~~a~---------~lg~~l~~~g~lL~~~~~VS 190 (271)
..+.++++++|.++.++.. ++. ....+...+... .+..+++++.++. .+++.|+..+.+|+ .+++|
T Consensus 164 ~~~~lvl~~tg~~~~T~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~l~~~~~~~l~-~~~vs 240 (273)
T TIGR00549 164 LDGYFVIADTGVSGSTKEA--VARVRQLLERFPELIDSIMDAIGELTLEAKAALQDGDVESLGELMNINQGLLK-ALGVS 240 (273)
T ss_pred CCeEEEEEECCCCCcHHHH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 3478999999999877643 221 111111111111 1223333333322 24666777777776 48999
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEE
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIAL 224 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaL 224 (271)
+|++|.|++.+++ .|++||||||||+|||+|+|
T Consensus 241 ~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 241 HPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred cHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 9999999999999 79999999999999999986
No 21
>PTZ00298 mevalonate kinase; Provisional
Probab=99.28 E-value=1.1e-11 Score=116.53 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCccCccchhhhhhhhhc-CCCCccccc-hhHHhhhccch---------hhHHhhHHHHHhhhcccccCC
Q psy8462 122 QCLPVVTVLLGSRNNSNQIHLHSDSARA-DKPTDISFD-IPKVQKLTPGA---------PKWANYVKGVVSIFNDDYEVS 190 (271)
Q Consensus 122 ~~L~Lll~~tG~~r~ssai~vv~e~~r~-~~~~~l~~~-i~~i~~L~~~a---------~~lg~~l~~~g~lL~~~~~VS 190 (271)
..+.++++++|.++.|... ++..++. +........ ++.++.++..+ ..++..|++.|++|+ .+++|
T Consensus 183 ~~~~lvv~~~~~~~sT~~~--~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~-~~~v~ 259 (328)
T PTZ00298 183 QPLYLVVCSTGITASTTKV--VGDVRKLKENQPTWFNRLLENYNACVSEAKEALQKGNLFRVGELMNANHDLCQ-KLTVS 259 (328)
T ss_pred CCCeEEEEECCCchhHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCC
Confidence 4567899999998876533 3221111 111111011 12222222222 124566666677777 57899
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcccC
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVSN 244 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~~ 244 (271)
+|++|.+++.+++ +|++|+||||+|+|||+++|++. +.++++.+++.+.|...
T Consensus 260 ~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~ 313 (328)
T PTZ00298 260 CRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEA 313 (328)
T ss_pred cHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhc
Confidence 9999999999999 89999999999999999999975 67778999998887654
No 22
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.04 E-value=2.8e-10 Score=85.59 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=58.1
Q ss_pred HHhhHHHHHhh-hcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEe-cCCCHHHHHHHHHHhcc
Q psy8462 172 WANYVKGVVSI-FNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV-HTDHVNDIIAKVKAHCV 242 (271)
Q Consensus 172 lg~~l~~~g~l-L~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv-~~~~~~~v~eal~~~y~ 242 (271)
++..+...+.. ......+.+|+++.+++.+.+ .|++|++|+|+|||||+++|+ +++.++++.+++++.|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 13 LGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 45666665553 112578999999999999999 799999999999999999999 66788999999988774
No 23
>PLN02451 homoserine kinase
Probab=98.21 E-value=5.2e-06 Score=80.15 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=67.2
Q ss_pred HhhHHHHHhhhcc------cccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcccCC
Q psy8462 173 ANYVKGVVSIFND------DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVSNP 245 (271)
Q Consensus 173 g~~l~~~g~lL~~------~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~~~ 245 (271)
.+++..++..|.+ ....++|+++++++.+++ +|++|++|+|+|- |++++++. +.++++.+++.+.|.+..
T Consensus 270 ~~d~~~l~~~m~nD~~~e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSGp--tvfal~~~~~~a~~i~~~l~~~~~~~~ 346 (370)
T PLN02451 270 QGDAVLLGEALSSDKIVEPTRAPLIPGMEAVKKAALE-AGAYGCTISGAGP--TAVAVIDDEEKGEEVGERMVEAFRKAG 346 (370)
T ss_pred cCCHHHHHHHHHHHHHhHHHHhhhCccHHHHHHHHHH-CCCeEEEEEccch--heEEEEcCHHHHHHHHHHHHHHHHHhc
Confidence 3345555555542 236789999999999999 8999999999987 77888874 467888899988774432
Q ss_pred --CCeEEEEecCC-CeEEEecc
Q psy8462 246 --TPTFFVSDAYQ-GATHVSLE 264 (271)
Q Consensus 246 --~~~~~~~~p~~-Ga~~~~~~ 264 (271)
...+++++++. |+++....
T Consensus 347 ~~~~~~~~~~~d~~Ga~v~~~~ 368 (370)
T PLN02451 347 NLKATASVKKLDRVGARLVESV 368 (370)
T ss_pred CCCceEEEeccCCCCeEEEecC
Confidence 56899999965 99887543
No 24
>PRK01212 homoserine kinase; Provisional
Probab=98.16 E-value=8.3e-06 Score=75.43 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=61.6
Q ss_pred hHHHHHhhhcc----cc-cCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeE
Q psy8462 175 YVKGVVSIFND----DY-EVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTF 249 (271)
Q Consensus 175 ~l~~~g~lL~~----~~-~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~ 249 (271)
++..+++.|++ .+ .-.+|+++.+++.+++ .|++|++|+|+| +|++++++++..+++.+++.+.|.......+
T Consensus 212 d~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (301)
T PRK01212 212 DYELAGRAMKDVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDKEDAEKVADALQKAFLQGIEGFV 288 (301)
T ss_pred CHHHHHHHhchhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhhccCCCeEE
Confidence 44455555433 22 2357999999999999 799999999986 8899999876668888899887622115678
Q ss_pred EEEecCC-CeEE
Q psy8462 250 FVSDAYQ-GATH 260 (271)
Q Consensus 250 ~~~~p~~-Ga~~ 260 (271)
++++++. |+++
T Consensus 289 ~~~~~~~~G~~~ 300 (301)
T PRK01212 289 HVLRLDTAGARV 300 (301)
T ss_pred EEeccCCCceEe
Confidence 9999866 8765
No 25
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.00 E-value=1.9e-05 Score=72.63 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=55.4
Q ss_pred hhHHHHHhhhc---ccccCC-chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcccCCCCe
Q psy8462 174 NYVKGVVSIFN---DDYEVS-CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVSNPTPT 248 (271)
Q Consensus 174 ~~l~~~g~lL~---~~~~VS-~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~~~~~~ 248 (271)
+++..++.+|. +.+.++ +|+++++++.+++ +|++|++|+|+| +|++++++. +..+++.+++++.|. .
T Consensus 204 ~d~~~~~~~~~n~l~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~~~-----~ 275 (286)
T PRK00128 204 GDYQGICANMGNVLENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGFCK-----E 275 (286)
T ss_pred CCHHHHHHhccCcHHHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhhcC-----c
Confidence 34555555444 356665 8999999999999 899999999998 889999976 456788888876543 4
Q ss_pred EEEEecC
Q psy8462 249 FFVSDAY 255 (271)
Q Consensus 249 ~~~~~p~ 255 (271)
++++++.
T Consensus 276 ~~~~~~~ 282 (286)
T PRK00128 276 VYLVRTL 282 (286)
T ss_pred EEEEeee
Confidence 5666543
No 26
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=97.97 E-value=1.6e-05 Score=74.10 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHH-HHHHHHHhcccCC-CCeEEEEecCC-CeEE
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVND-IIAKVKAHCVSNP-TPTFFVSDAYQ-GATH 260 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~-v~eal~~~y~~~~-~~~~~~~~p~~-Ga~~ 260 (271)
..+|+++.+++.+++ .|++|++|+|+| +|++++++++...+ +.+.+.+.+ ... .+.+++++++. |+++
T Consensus 231 ~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 231 SLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADEEFAEQKEQDLLEVLH-KQGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred hhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecchhhHHHHHHHHHHHH-hcCCCeEEEEcccCCCCeEe
Confidence 458999999999999 899999999998 88999998765544 334443332 211 57889999866 8765
No 27
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=97.78 E-value=8.6e-05 Score=73.78 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=43.4
Q ss_pred cccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCC--HHHHHHHHH
Q psy8462 186 DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDH--VNDIIAKVK 238 (271)
Q Consensus 186 ~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~--~~~v~eal~ 238 (271)
...|-+|++-.|++.+.+..|++|||..|||||=|+++|+..+. .+.+.+.++
T Consensus 376 gv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~ 430 (454)
T TIGR01219 376 SVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWS 430 (454)
T ss_pred CCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHh
Confidence 34677899999999999988999999999999999999996642 345555553
No 28
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.77 E-value=9.8e-05 Score=68.32 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCC-HHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDH-VNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~-~~~v~eal~~~y 241 (271)
.+|+++++++.+++ +|++|++|+|+| ||++++++.+. ++++.+++.+.+
T Consensus 221 ~~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~~~ 270 (280)
T PRK14614 221 RFPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSRES 270 (280)
T ss_pred cChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhhcc
Confidence 37999999999999 899999999996 99999998754 566777777643
No 29
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=97.76 E-value=3.9e-05 Score=70.50 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=45.5
Q ss_pred HhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhc
Q psy8462 173 ANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHC 241 (271)
Q Consensus 173 g~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y 241 (271)
...|...+.++...++++++ +++.|++ +|++|+||||+ |||+++|+++. +++.+++++.+
T Consensus 196 ~~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~~~~~~~~ 255 (261)
T TIGR01920 196 LKAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAAEALMEFG 255 (261)
T ss_pred HHHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHHHHHHhCC
Confidence 44555544444467888875 4567888 89999999996 99999999755 78889987754
No 30
>PRK01123 shikimate kinase; Provisional
Probab=97.65 E-value=0.00029 Score=65.23 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFV 251 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~ 251 (271)
|...|...+.+.+..+++++ .++..+++ +|++|++++|+ |+|+++|++.+..+++.+++++. ..+++
T Consensus 205 l~~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l~~~------~~~~~ 271 (282)
T PRK01123 205 YFKAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAWEKY------GKVIV 271 (282)
T ss_pred HHHHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecC--CCeEEEEeCCCCHHHHHHHHHhC------CEEEE
Confidence 44444432222234566764 33555787 89999999985 79999999988889999999874 25777
Q ss_pred Eec-CCCeEE
Q psy8462 252 SDA-YQGATH 260 (271)
Q Consensus 252 ~~p-~~Ga~~ 260 (271)
+++ ..|+++
T Consensus 272 ~~~~~~G~~v 281 (282)
T PRK01123 272 TKINNEGARI 281 (282)
T ss_pred eeecCCCcee
Confidence 777 467654
No 31
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.52 E-value=0.00021 Score=66.29 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=58.3
Q ss_pred HhhHHHHHhhhcc---cccCC-chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcccCCCC
Q psy8462 173 ANYVKGVVSIFND---DYEVS-CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVSNPTP 247 (271)
Q Consensus 173 g~~l~~~g~lL~~---~~~VS-~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~~~~~ 247 (271)
.++...+++.|.+ .+.++ +|+++++++.+++ .|++|++|+|+|-+ +++++++ +.++++.+++.+.+.. .
T Consensus 207 ~~d~~~l~~~~~n~le~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG~t--v~~l~~~~~~~~~~~~~l~~~g~~---~ 280 (300)
T PRK03188 207 AGDPAQLAPLLGNDLQAAALSLRPSLRRTLRAGEE-AGALAGIVSGSGPT--CAFLCADADSAVDVAAALSGAGVC---R 280 (300)
T ss_pred cCCHHHHHHHhhCcCHHHHHHhCchHHHHHHHHHH-CCCCEEEEEccccc--eEEEeCCHHHHHHHHHHHHhcCcc---e
Confidence 3355555555542 24444 9999999999999 89999999999876 5677765 4567777888664321 3
Q ss_pred eEEEEe-cCCCeEEEe
Q psy8462 248 TFFVSD-AYQGATHVS 262 (271)
Q Consensus 248 ~~~~~~-p~~Ga~~~~ 262 (271)
.++++. ...|+++++
T Consensus 281 ~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 281 TVRVATGPVPGARVVS 296 (300)
T ss_pred eEEEeeccccceEecc
Confidence 566644 377888764
No 32
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.04 E-value=0.0042 Score=58.14 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred hhcccccCCchhHHHHHHHHH-cCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcccCCCCeEEEEecCC-Ce
Q psy8462 182 IFNDDYEVSCKELDDIAHCAQ-SLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCVSNPTPTFFVSDAYQ-GA 258 (271)
Q Consensus 182 lL~~~~~VS~peiD~Lv~~A~-~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~~~~~~~~~~~~p~~-Ga 258 (271)
-++....-..|++.++.+.++ + +|++|+.|+|+| .+++++++.. .++++.+++.+.+... ...++++++.. |+
T Consensus 233 ~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~~-~~~v~i~~~~n~G~ 308 (312)
T PRK02534 233 DLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFADP-GLDAWVCQFISHGI 308 (312)
T ss_pred chHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhccC-ceEEEEEEecCCCc
Confidence 333333337899999998888 7 899999999987 8999999763 6677888887765432 13577877754 87
Q ss_pred EE
Q psy8462 259 TH 260 (271)
Q Consensus 259 ~~ 260 (271)
++
T Consensus 309 ~v 310 (312)
T PRK02534 309 QL 310 (312)
T ss_pred ee
Confidence 65
No 33
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.03 E-value=0.00092 Score=62.55 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y 241 (271)
.+|+++++.+.+.+ +||+|++|||+| +|+++|++. +.++++.+++.+..
T Consensus 239 l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~~g 288 (296)
T PRK14615 239 AHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKGHN 288 (296)
T ss_pred hChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhhhc
Confidence 79999999999999 899999999999 999999875 45567888887643
No 34
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=96.96 E-value=0.0024 Score=59.58 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCC-HHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDH-VNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~-~~~v~eal~~~y 241 (271)
++|+++++.+.+++ +|++|++|||+ |+|++++++... +.++.+.+++.+
T Consensus 226 ~~p~l~~i~~~l~~-~Ga~~a~mSGS--G~tvf~l~~~~~~a~~~~~~~~~~~ 275 (293)
T TIGR00154 226 RHTEVAQALNWLLE-YGLAPERLSGS--GACVFALFDMESEAEQVLEQAPEWL 275 (293)
T ss_pred cCHHHHHHHHHHHh-CCCCeEEEecc--ccceEEEeCCHHHHHHHHHHhHHHh
Confidence 77999999999999 89999999999 599999997643 556666665443
No 35
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.48 E-value=0.0034 Score=57.87 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=45.6
Q ss_pred hcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhc
Q psy8462 183 FNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHC 241 (271)
Q Consensus 183 L~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y 241 (271)
|.......+|+++.+.+.+++ +|++|++|||+| +|++++++.. .++.+.+.+.+.|
T Consensus 209 l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~~~l~~~~ 265 (276)
T PRK14612 209 LEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAAAALRARH 265 (276)
T ss_pred cHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHHHHhHhhC
Confidence 344455689999999999999 899999999998 5999999754 4677788887765
No 36
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.42 E-value=0.0084 Score=55.89 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.1
Q ss_pred CchhHHHHHHHHHcCC-CCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLP-GVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~-GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y 241 (271)
.+|+++.+.+.+.+ + |++|++|+|+| .+++++++.. .++++.+++++.+
T Consensus 229 l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~~~ 279 (290)
T PRK14608 229 LAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAAAH 279 (290)
T ss_pred cCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHhhC
Confidence 58999999999998 8 99999999998 8899999753 4667777776543
No 37
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.41 E-value=0.0045 Score=57.99 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhccc
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVS 243 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~ 243 (271)
+|+++.+.+.+++ .|++|++|||+ |.|++++++. +.++++.+.+++.|..
T Consensus 239 ~P~~~~i~~~~~~-~Ga~~~~mSGS--Gptvf~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 239 HPELGVLKDKFLE-FGSSYCSLTGS--GSSMYGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred CcHHHHHHHHHHH-cCCCEEEEEcc--ccceEEEeCCHHHHHHHHHHHHHhhcc
Confidence 8999999999998 89999999999 7899999976 5667888888877654
No 38
>PTZ00299 homoserine kinase; Provisional
Probab=96.11 E-value=0.012 Score=56.38 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=61.3
Q ss_pred hcccccC--CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC------------CCHHHHHHHHHHhcccCC-CC
Q psy8462 183 FNDDYEV--SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT------------DHVNDIIAKVKAHCVSNP-TP 247 (271)
Q Consensus 183 L~~~~~V--S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~------------~~~~~v~eal~~~y~~~~-~~ 247 (271)
+++-|.. -.|+++.+.+.+.+ +|++|+-|+|+|= +++++++. +..+++.++|.+.|.+.. .+
T Consensus 231 lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSGP--Tv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 307 (336)
T PTZ00299 231 LHEQQRSDALFPHFRPCVKAARE-AGAHYAFLSGAGP--SVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAG 307 (336)
T ss_pred ccCcccccccCccHHHHHHHHHH-CCCeEEEEEchhh--hheEEeccccccccccccchhHHHHHHHHHHHHHHHcCCce
Confidence 4444542 48899999999999 8999999999974 58888872 336789999988776543 67
Q ss_pred eEEEEecCC-CeEEEec
Q psy8462 248 TFFVSDAYQ-GATHVSL 263 (271)
Q Consensus 248 ~~~~~~p~~-Ga~~~~~ 263 (271)
.++++.++. |++++.+
T Consensus 308 ~~~~~~~~~~G~~~~~~ 324 (336)
T PTZ00299 308 RVIITQPSDQGVHLVGT 324 (336)
T ss_pred EEEEccCCCCCcEEEee
Confidence 899999976 9998854
No 39
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.63 E-value=0.01 Score=54.92 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=37.3
Q ss_pred HhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC
Q psy8462 180 VSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT 227 (271)
Q Consensus 180 g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~ 227 (271)
++-++......+|+++++.+.+++ .|++|++|||+| ++++++++.
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECC
Confidence 444444556678999999999999 899999999995 999999965
No 40
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.45 E-value=0.02 Score=53.08 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhccc
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVS 243 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~ 243 (271)
.|+++.+.+.+++ .|++|+.|+|+|- ++++|+++ +.++++.+++++.|..
T Consensus 226 ~p~l~~v~~~~~~-~Galg~~lSGSGp--tv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 226 YPAVRKVKDDLLE-AGSFFASLSGSGS--AVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred ChHHHHHHHHHHh-CCCCeEEEecccc--cceEEeCCHHHHHHHHHHhHHhCcc
Confidence 7899999999999 8999999999986 89999976 5678888888887754
No 41
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=94.37 E-value=0.16 Score=48.39 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEE-ecCCCeEEEe
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVS-DAYQGATHVS 262 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~-~p~~Ga~~~~ 262 (271)
-|..+++.+.|.+ +||+|+-++|||= ++++++++...+...+.+++.|.+.....++++ ...+|++++.
T Consensus 229 ~P~~~~v~~~a~~-~gA~g~~lSGAGP--Ti~al~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 229 VPGYAEVREAALE-AGALGATLSGAGP--TVFALADESDAEKAAALLEELYEQGIKGRVHILALDSDGARVVE 298 (299)
T ss_pred CccHHHHHHHHhh-CCceEEEEecCCC--eEEEEeccchhhHHHHHHHHHHHhCCcceEEEEeecCCcceEec
Confidence 4688899999999 8999999999975 499999886344555555554444334555554 4588877653
No 42
>KOG4644|consensus
Probab=94.32 E-value=0.037 Score=56.35 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=71.7
Q ss_pred cchhhhccccCCCCC--CeEEEEcCCccCccchhhhhhhhhc--CCCCccccchhHHhhhccchhh-H-HhhHHHHHhhh
Q psy8462 110 NELQIFRSKYHKQCL--PVVTVLLGSRNNSNQIHLHSDSARA--DKPTDISFDIPKVQKLTPGAPK-W-ANYVKGVVSIF 183 (271)
Q Consensus 110 ~~l~i~~s~~~k~~L--~Lll~~tG~~r~ssai~vv~e~~r~--~~~~~l~~~i~~i~~L~~~a~~-l-g~~l~~~g~lL 183 (271)
++.+|-++..-.+.| .|+++|||.+|..+ ..+++..|. .+-+...+..+++-+-+++..+ + .+.+.-+++.|
T Consensus 779 e~eeiTipe~f~ekL~dhLLLVYTGKTRLAk--NLLQdViRn~far~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL 856 (948)
T KOG4644|consen 779 EHEEITIPEEFREKLEDHLLLVYTGKTRLAK--NLLQDVIRNFFARCKATKQKAHKLAEATDECAEGFEKGSLELLGECL 856 (948)
T ss_pred eeeeecCCHHHHHHHhhcEEEEEeCchHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444444444444444 89999999998766 334443331 1111111112222222233222 3 22444555555
Q ss_pred cc--------cccCCchhHHHHHHHHHcCCCCcce--eeecCCCceEEEEEecCCCHHHHHHHHHH
Q psy8462 184 ND--------DYEVSCKELDDIAHCAQSLPGVLGC--RMTGGGFGGCAIALVHTDHVNDIIAKVKA 239 (271)
Q Consensus 184 ~~--------~~~VS~peiD~Lv~~A~~~~GalGa--KltGaG~GG~viaLv~~~~~~~v~eal~~ 239 (271)
.. +-|+-.+.+.+|++..... ..|- -.-|||+||++..+.+.....+.++++-.
T Consensus 857 ~~YweqKk~MapgCEPl~Vr~lldmLaph--~hgesgw~AGAGGGGFiYLl~kEpqqkeaiEa~La 920 (948)
T KOG4644|consen 857 EHYWEQKKFMAPGCEPLNVRELLDMLAPH--KHGESGWAAGAGGGGFIYLLIKEPQQKEAIEAFLA 920 (948)
T ss_pred HHHHHhhhccCCCCCCCcHHHHHHHhccc--cccccchhccCCCCcEEEEEecCCCCHHHHHHhhc
Confidence 32 3467777788888754432 3443 58899999999999988777777777644
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.65 E-value=0.28 Score=45.63 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhc
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y 241 (271)
+|+++++.+.+.+..|++++.|||+|- |++++++. +.++++.+.+.+.+
T Consensus 222 ~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l~~~~~~a~~~~~~l~~~~ 271 (283)
T PRK14610 222 VPEIEEILFVLESLEGCILSRMSGSGA--TCFALFEEEEAAEAAARYLKMTR 271 (283)
T ss_pred ChHHHHHHHHHHhcCCCceEEEeCccc--ceeEEeCCHHHHHHHHHHhhhhC
Confidence 899999999776535899999999986 89999876 45667777776654
No 44
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=91.99 E-value=1 Score=43.04 Aligned_cols=86 Identities=12% Similarity=0.229 Sum_probs=60.2
Q ss_pred HHhhHHHHHhhhc-----ccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC-
Q psy8462 172 WANYVKGVVSIFN-----DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP- 245 (271)
Q Consensus 172 lg~~l~~~g~lL~-----~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~- 245 (271)
+++-+++++++.- ..-+.-|+.+..+++.+.+ + ++||=++ -||=.+.+++++....+++..+.+...+..
T Consensus 219 fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~~~~~~~~~g~ 294 (312)
T COG1907 219 FGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-A-AYGAGQS--SWGPTVYGIVDSREAGSVVRKLIDILLEEGI 294 (312)
T ss_pred HHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-h-ccccccc--ccCCEEEEeccccccchHHHHHHHHHHhcCC
Confidence 5666666666651 1346788999999999999 5 7887664 489999999988766654444433333322
Q ss_pred CCeEEEEec-CCCeEEE
Q psy8462 246 TPTFFVSDA-YQGATHV 261 (271)
Q Consensus 246 ~~~~~~~~p-~~Ga~~~ 261 (271)
.+.+++++| ..||.+.
T Consensus 295 ~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 295 GGEVFVTKARNRGAEIL 311 (312)
T ss_pred ceEEEEeccCCCCceec
Confidence 578999999 5577654
No 45
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=88.41 E-value=2.2 Score=40.57 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=55.3
Q ss_pred HhhHHHHHhhhcc-------ccc--CCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhccc
Q psy8462 173 ANYVKGVVSIFND-------DYE--VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVS 243 (271)
Q Consensus 173 g~~l~~~g~lL~~-------~~~--VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~ 243 (271)
.++.+.+++.|++ ..+ .-.+.+..+++.+.. ++|+-|+|+ |=+++++++.+ .+++.+++.+.+..
T Consensus 231 ~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~---a~g~~iSGs--GPTv~al~~~~-~~~~~~~~~~~~~~ 304 (324)
T TIGR00144 231 EGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS---APGAGMSSF--GPTVYAVTDEK-PGNIAGAVADIFGP 304 (324)
T ss_pred hcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh---ccCceecCC--CCeEEEEecCc-hHHHHHHHHHHhhh
Confidence 4455556665553 111 357788888777765 488888765 46688888754 66778888776644
Q ss_pred CC-CCeEEEEecC-CCeEE
Q psy8462 244 NP-TPTFFVSDAY-QGATH 260 (271)
Q Consensus 244 ~~-~~~~~~~~p~-~Ga~~ 260 (271)
.. ...++++++. .|+++
T Consensus 305 ~~~~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 305 YGVYGRIIVTKARNRGAFI 323 (324)
T ss_pred CCCceEEEEEccCCCCCEe
Confidence 33 5678999997 48876
No 46
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=67.54 E-value=31 Score=31.77 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=28.7
Q ss_pred CCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHH
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKV 237 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal 237 (271)
-..|++..+.+.... .| +|+.|+|+| -+++++++. .+++.+.+
T Consensus 220 ~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf~l~~~--~~~~~~~~ 262 (275)
T PRK14611 220 ELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVYVFGKP--SEEVKKAA 262 (275)
T ss_pred HHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccceeEeCC--HHHHHHHH
Confidence 457889988886655 45 588999886 567788743 33443443
No 47
>KOG1537|consensus
Probab=67.24 E-value=13 Score=35.53 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHcC--CCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC-CCeEEEEec-CCCeEE
Q psy8462 191 CKELDDIAHCAQSL--PGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP-TPTFFVSDA-YQGATH 260 (271)
Q Consensus 191 ~peiD~Lv~~A~~~--~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~-~~~~~~~~p-~~Ga~~ 260 (271)
.|-++.+...+... .|++|--++|||= .++|++. ++-+++.++|-++|.+.. .+.+-..+| .||+.+
T Consensus 282 IPGl~~il~~~~p~t~pGl~GiclSGAGP--T~lAlat-enf~eI~~~mv~~F~K~G~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 282 IPGLEAILKAALPATYPGLFGICLSGAGP--TALALAT-ENFQEIGEKMVEAFWKVGHKCSVASLKPALDGAGV 352 (355)
T ss_pred CccHHHHHHhhCcccCCceeeEEecCCCC--eeEEEec-CcHHHHHHHHHHHHHhhCceeeeEeeccccCCcce
Confidence 46778888877761 4999999999874 5888885 778889999988888766 677777775 666654
No 48
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=61.58 E-value=13 Score=35.37 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y 241 (271)
..|++........+ .|+++++|||.| -|++++++.. .++.+.+.+.+.+
T Consensus 224 ~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~~~ 273 (289)
T COG1947 224 LYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPKGV 273 (289)
T ss_pred hChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhccc
Confidence 45788887776676 588999999986 6789999875 4455666665543
No 49
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=60.38 E-value=26 Score=33.20 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=48.5
Q ss_pred hHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEec
Q psy8462 175 YVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDA 254 (271)
Q Consensus 175 ~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p 254 (271)
-|.-.|-+.-..+|... +++..|++ +|+.++-++|-|= +.+++++++ +++.+++.+.+ .++++++
T Consensus 204 Am~lNG~~y~~aLG~~~----e~~~~ale-~GA~~aglSGtGP--a~~Al~~~~--~~v~ea~~~~G------~V~~t~~ 268 (278)
T COG1685 204 AMVLNGILYCSALGYDL----EPALKALE-AGAAAAGLSGTGP--AYFALTEDP--EEVAEAWSKIG------DVIETRN 268 (278)
T ss_pred HHHHhHHHHHHHhCCCh----HHHHHHHh-cccceeccCCCCC--ceEEEecCc--HHHHHHHHhCC------eEEEEec
Confidence 34334444444566553 24556888 8999999988765 489999766 88999998753 6888877
Q ss_pred -CCCeEEE
Q psy8462 255 -YQGATHV 261 (271)
Q Consensus 255 -~~Ga~~~ 261 (271)
..+++.+
T Consensus 269 ~~~~~~~~ 276 (278)
T COG1685 269 VGERARDY 276 (278)
T ss_pred CCCCceec
Confidence 4455443
No 50
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=56.20 E-value=20 Score=33.17 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y 241 (271)
-.|+++.+.+.+.+ .|+ +.|||+| -++++++++ +.++++.+.+++.|
T Consensus 216 ~~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~~ 263 (271)
T PRK00343 216 RYPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEWL 263 (271)
T ss_pred hChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhhc
Confidence 47899999998888 788 8899886 568899875 34556667776544
No 51
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=53.73 E-value=22 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHHcCCCC-cc--eeeecCCCceEEEEEecC-CCHHHHH-HHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGV-LG--CRMTGGGFGGCAIALVHT-DHVNDII-AKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~Ga-lG--aKltGaG~GG~viaLv~~-~~~~~v~-eal~~~y 241 (271)
-.|+|..+.+...+ .|+ +| ++|||.| -|++++++. +..+++. ..++..|
T Consensus 205 ~~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~ 258 (288)
T PRK00650 205 LRLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAI 258 (288)
T ss_pred hChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhh
Confidence 36889999888877 554 24 7899886 568888876 3444444 5665554
No 52
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=52.94 E-value=1.2e+02 Score=29.37 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEecCCCeEEE
Q psy8462 195 DDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHV 261 (271)
Q Consensus 195 D~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p~~Ga~~~ 261 (271)
..|-.+... .|++++=+-|||+|-.+.++..++ -++++++.... -.+.-+...+|.+.-
T Consensus 275 ~~Ld~i~~l-~gvl~~lipgaGggdaif~l~~~~--~e~re~w~~~g-----i~i~dv~adeGlr~E 333 (337)
T COG3890 275 AALDSIFDL-LGVLCDLIPGAGGGDAIFLLYRPN--IEAREAWLSKG-----ISIVDVNADEGLRFE 333 (337)
T ss_pred hhhhhHHhc-cCceEeecccCCCCceEEEEeccc--HHHHHHHHhCC-----eEEEEcccccccccc
Confidence 344444444 899999999999999988887543 34555555432 123344456787754
No 53
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=51.25 E-value=9.2 Score=30.08 Aligned_cols=47 Identities=30% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCCCCCCCCcceeEecCCCCCCCcccCCCCCCChHHHhHHHHHHHHhhc
Q psy8462 13 KGLTNPQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKI 61 (271)
Q Consensus 13 ~~~~~~~~~~~s~~vpg~g~~~~d~~~~np~~~~~~r~e~ev~~ll~k~ 61 (271)
+--|++.+|+|+++ ..-+---|.....|++|+.||++++.+.-.+|.
T Consensus 31 ~r~t~~itGvs~~l--~~~~~~~~~~~~~~~et~~e~~~r~~~ek~~~~ 77 (94)
T PF12220_consen 31 KRKTPPITGVSQYL--SEFEDYKDEPPPEPTETKEERRERKRKEKKEKN 77 (94)
T ss_pred cccCCCCCcHHHHH--HHHhccccCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 34578899999998 222222223335679999999999887665543
No 54
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=48.59 E-value=41 Score=24.10 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHH
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKA 239 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~ 239 (271)
+|...+..|.++|.+ .|.--.|+|+. .+..+.-++.+.++++.+.+.+
T Consensus 21 i~~~~l~~la~ia~~-yg~~~irlT~~--Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEK-YGDGEIRLTTR--QNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHH-HSTSEEEEETT--SCEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHH-hCCCeEEECCC--CeEEEeCCCHHHHHHHHHHHHc
Confidence 567789999999998 46534488875 4588888999999999998865
No 55
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=44.33 E-value=65 Score=25.12 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHcCCCCcce---eeecCCCce--------E-----------EEEEecCCCHHHHHHHHHHhcccCC--C
Q psy8462 191 CKELDDIAHCAQSLPGVLGC---RMTGGGFGG--------C-----------AIALVHTDHVNDIIAKVKAHCVSNP--T 246 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGa---KltGaG~GG--------~-----------viaLv~~~~~~~v~eal~~~y~~~~--~ 246 (271)
...++.+.+++.+ .|+-|. +..|-|-.. . +..+|+.+.++++++++.+...... +
T Consensus 7 ~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~i~ivv~d~~v~~iv~~I~~~~~tg~~Gd 85 (102)
T PF00543_consen 7 PEKLEEVIEALRE-AGVPGMTVSEVRGRGRQKGQAEIYRGDEYFVEFSPKVKIEIVVPDEDVEEIVEAISEAARTGEPGD 85 (102)
T ss_dssp GGGHHHHHHHHHH-TTGSCEEEEEEEEESSTTTEEEEETTEEECCCEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTS
T ss_pred hhHHHHHHHHHHH-CCCCeEEEEEeEEecccccccceeeeeeeeecccccEEEEEEECHHhHHHHHHHHHHhccCCCCCC
Confidence 4578889998888 788777 444544322 2 5667888999999999987655433 5
Q ss_pred CeEEEEecCCCe
Q psy8462 247 PTFFVSDAYQGA 258 (271)
Q Consensus 247 ~~~~~~~p~~Ga 258 (271)
..+|++...+-.
T Consensus 86 GkIfV~~V~~ai 97 (102)
T PF00543_consen 86 GKIFVSPVEDAI 97 (102)
T ss_dssp EEEEEEEESEEE
T ss_pred EEEEEEEhheEE
Confidence 677776655433
No 56
>KOG4519|consensus
Probab=35.70 E-value=1.4e+02 Score=29.56 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=46.7
Q ss_pred ccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC--CCHHHHHHHHHHhcccCCCCeEEEEecCCCeEEEe
Q psy8462 187 YEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT--DHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVS 262 (271)
Q Consensus 187 ~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~--~~~~~v~eal~~~y~~~~~~~~~~~~p~~Ga~~~~ 262 (271)
-.|-.+..-.|.+-.....|++++-+-||||=-.+.++... +...+++++++...- -..-+.....|+++-.
T Consensus 378 vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~~w~~~~V----~~ldV~~a~~Gv~~E~ 451 (459)
T KOG4519|consen 378 VDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSHNV----LALDVREAPHGVCLES 451 (459)
T ss_pred CCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHhhhcccCe----eEEeeeeCCCcceecc
Confidence 34556666778888887789999999999998888888754 333444444433211 1233444566887643
No 57
>PF03491 5HT_transporter: Serotonin (5-HT) neurotransmitter transporter, N-terminus; InterPro: IPR013086 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters []. The serotonin (5-HT) neurotransmitter transporter is known to be expressed in the brain and also in the periphery: on platelet, placental and pulmonary cell membranes. The brain 5-HT transporter is thought to be the principal site of action of therapeutic anti-depressants (which inhibit this transporter), and it may also mediate the behavioural effects of cocaine and amphetamines []. The human form (630 amino acids) is 92% identical to the rat brain 5-HT transporter, and shares the same predicted topology and conserved sites for post-translational modification. This domain is found at the N-terminal region of some 5-HT neurotransmitters.; GO: 0005335 serotonin:sodium symporter activity, 0006836 neurotransmitter transport, 0005887 integral to plasma membrane
Probab=34.53 E-value=26 Score=24.04 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=19.3
Q ss_pred ccCcCCCCCCCC---------CCCcceeEecCCCC
Q psy8462 7 EMGLLPKGLTNP---------QVNHSSKSREGSGE 32 (271)
Q Consensus 7 ~~~~~~~~~~~~---------~~~~~s~~vpg~g~ 32 (271)
|-|+|-||+..+ .+|||++--||+|.
T Consensus 1 ENgvLqKg~p~~gdk~E~gqISNGYSaVps~gagd 35 (42)
T PF03491_consen 1 ENGVLQKGVPTPGDKAESGQISNGYSAVPSPGAGD 35 (42)
T ss_pred CccccccccCCCCCccccceeccCcccccCCCCCc
Confidence 457777776443 57899998999986
No 58
>PRK05905 hypothetical protein; Provisional
Probab=21.81 E-value=1.2e+02 Score=28.09 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFG 218 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~G 218 (271)
-+|+|.++.+...+ .|+ .+.|||.|--
T Consensus 222 ~~P~i~~~~~~l~~-~g~-~a~MSGSGst 248 (258)
T PRK05905 222 LYPNLLYKYNELLN-DGF-YTILSGAGSS 248 (258)
T ss_pred hChHHHHHHHHHHh-CCC-CEEEeCcchh
Confidence 37899999988888 686 8899999744
Done!