Query psy8462
Match_columns 271
No_of_seqs 285 out of 1299
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:31:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 99.8 5.5E-21 1.9E-25 188.9 5.9 124 135-262 382-519 (520)
2 2a2c_A N-acetylgalactosamine k 99.7 1.8E-18 6.2E-23 168.1 7.9 93 170-263 378-477 (478)
3 1pie_A Galactokinase; galactos 99.6 1.9E-16 6.4E-21 150.6 6.5 92 172-264 325-419 (419)
4 2cz9_A Probable galactokinase; 99.6 1.4E-15 4.7E-20 139.5 7.6 88 172-260 261-350 (350)
5 1wuu_A Galactokinase; galactos 99.6 3.8E-15 1.3E-19 140.5 8.8 88 172-261 310-397 (399)
6 3k85_A D-glycero-D-manno-hepto 99.5 4E-15 1.4E-19 139.4 2.5 132 124-263 197-341 (357)
7 1kvk_A MK, mevalonate kinase; 99.5 6.6E-14 2.3E-18 131.7 10.2 91 172-266 294-385 (395)
8 3gon_A Phosphomevalonate kinas 99.5 3.2E-14 1.1E-18 128.7 7.6 114 120-241 196-320 (335)
9 4hac_A Mevalonate kinase; GHMP 99.4 3.3E-13 1.1E-17 124.5 10.0 129 123-260 180-320 (321)
10 2hfs_A Mevalonate kinase, puta 99.3 4.5E-12 1.5E-16 115.7 8.5 87 172-260 245-332 (332)
11 3k17_A LIN0012 protein; protei 99.3 3.3E-12 1.1E-16 120.2 5.3 113 125-242 214-344 (365)
12 2x7i_A Mevalonate kinase; tran 99.2 2.6E-11 8.9E-16 109.5 9.4 77 172-254 229-306 (308)
13 2pg9_A Phosphomevalonate kinas 99.2 2.3E-11 7.9E-16 112.9 8.3 125 121-257 199-334 (337)
14 2oi2_A Mevalonate kinase; enzy 99.1 9.4E-11 3.2E-15 104.5 8.9 69 172-242 215-284 (292)
15 1kkh_A Mevalonate kinase; mixe 99.1 1.7E-10 5.9E-15 104.5 10.2 119 124-255 192-316 (317)
16 1h72_C HK, homoserine kinase; 98.7 6.3E-08 2.1E-12 86.6 9.6 125 122-261 164-296 (296)
17 3hul_A HSK, HK, homoserine kin 98.1 9.6E-06 3.3E-10 74.0 9.7 85 173-263 200-291 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 98.0 9.1E-06 3.1E-10 74.5 6.9 126 121-262 165-301 (306)
19 1uek_A 4-(cytidine 5'-diphosph 97.7 2.7E-05 9.4E-10 69.3 5.3 60 190-258 209-269 (275)
20 2gs8_A Mevalonate pyrophosphat 97.6 8.4E-05 2.9E-09 67.4 6.3 80 172-260 228-317 (317)
21 3qt5_A Mevalonate diphosphate 97.5 0.0002 6.7E-09 66.4 8.0 66 190-261 262-331 (332)
22 2v8p_A 4-diphosphocytidyl-2-C- 96.7 0.00056 1.9E-08 60.8 2.0 51 173-228 197-252 (271)
23 2ww4_A 4-diphosphocytidyl-2C-m 95.4 0.0068 2.3E-07 54.4 2.9 45 189-238 217-262 (283)
24 2hke_A Diphosphomevalonate dec 93.1 0.52 1.8E-05 44.0 10.1 71 190-262 265-372 (380)
25 1fi4_A Mevalonate 5-diphosphat 92.8 0.18 6.3E-06 47.8 6.8 50 191-242 295-348 (416)
26 3lto_A Mevalonate diphosphate 86.1 1.3 4.3E-05 41.0 6.4 51 190-243 259-310 (323)
27 2j9c_A GLNK1, hypothetical nit 76.8 3 0.0001 32.7 4.6 81 189-270 10-117 (119)
28 2eg2_A Nitrogen regulatory pro 74.9 9.2 0.00032 29.4 6.9 69 189-258 8-100 (112)
29 1vfj_A Nitrogen regulatory pro 74.2 10 0.00035 29.3 7.0 67 190-257 9-99 (116)
30 2ns1_B Nitrogen regulatory pro 71.9 14 0.00049 28.5 7.4 69 189-258 12-104 (116)
31 2o66_A PII protein; regulation 71.4 11 0.00038 30.4 6.9 70 189-259 20-114 (135)
32 3bzq_A Nitrogen regulatory pro 70.5 13 0.00045 28.5 6.9 68 190-258 11-102 (114)
33 3m05_A Uncharacterized protein 68.7 7.7 0.00026 30.8 5.2 53 191-244 15-72 (114)
34 1hwu_A PII protein; herbaspiri 68.2 16 0.00053 28.0 6.8 67 190-257 9-99 (112)
35 2gw8_A PII signal transduction 66.2 15 0.00052 28.2 6.4 69 190-259 11-103 (114)
36 3f0n_A Mevalonate pyrophosphat 65.5 7 0.00024 37.5 5.1 64 178-243 276-346 (414)
37 3t9z_A GLNK3, nitrogen regulat 64.5 15 0.00052 28.9 6.2 69 190-259 9-101 (118)
38 3ncq_A Nitrogen regulatory pro 61.0 15 0.00051 29.0 5.5 70 190-260 9-102 (119)
39 4aff_A Nitrogen regulatory pro 56.0 36 0.0012 26.6 6.9 70 190-260 9-102 (116)
40 2cz4_A Hypothetical protein TT 54.1 39 0.0013 26.5 6.9 62 190-252 33-108 (119)
41 3mhy_A PII-like protein PZ; PI 43.0 55 0.0019 25.1 6.0 69 190-259 9-101 (112)
42 3l7p_A Putative nitrogen regul 34.9 74 0.0025 24.7 5.6 69 191-260 12-105 (115)
43 1o6d_A Hypothetical UPF0247 pr 21.3 97 0.0033 25.8 4.3 28 44-71 45-74 (163)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.82 E-value=5.5e-21 Score=188.85 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=103.2
Q ss_pred cCccchhhhhhhhhcCCCCccccchhHHhhhc--cchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceee
Q psy8462 135 NNSNQIHLHSDSARADKPTDISFDIPKVQKLT--PGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRM 212 (271)
Q Consensus 135 r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~--~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKl 212 (271)
...|+.||++|+.|+.++.+++..-+ ... ++...|+.+|+++|.+|+++||||||++|.|+++|++ .|++||||
T Consensus 382 l~~RA~HVv~E~~Rv~~~~~al~~~~---~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~Garl 457 (520)
T 3v2u_C 382 LYQRAKHVYSESLRVLKALKMMTSAT---FHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRL 457 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSS---CCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEE
Confidence 34588899999999877554432100 000 1234479999999999999999999999999999999 89999999
Q ss_pred ecCCCceEEEEEe---cCCCHHHHHHHHHHhcccCC---------CCeEEEEecCCCeEEEe
Q psy8462 213 TGGGFGGCAIALV---HTDHVNDIIAKVKAHCVSNP---------TPTFFVSDAYQGATHVS 262 (271)
Q Consensus 213 tGaG~GG~viaLv---~~~~~~~v~eal~~~y~~~~---------~~~~~~~~p~~Ga~~~~ 262 (271)
||||||||+|+|| +++.+++++++|.+.|+++. .+.+|+|+|++||+++.
T Consensus 458 TGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 458 TGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp CSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred ecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence 9999999999999 88999999999999998653 36799999999999874
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.74 E-value=1.8e-18 Score=168.08 Aligned_cols=93 Identities=26% Similarity=0.479 Sum_probs=84.2
Q ss_pred hhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC----
Q psy8462 170 PKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP---- 245 (271)
Q Consensus 170 ~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~---- 245 (271)
..|+.+|+++|.++++.++||||++|+|+++|++ +|++|+||||||||||+++||+++.+++++++|++.|++.+
T Consensus 378 ~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~~ 456 (478)
T 2a2c_A 378 QLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSL 456 (478)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCccc
Confidence 3478999999999999999999999999999999 79999999999999999999999889999999999998774
Q ss_pred ---CCeEEEEecCCCeEEEec
Q psy8462 246 ---TPTFFVSDAYQGATHVSL 263 (271)
Q Consensus 246 ---~~~~~~~~p~~Ga~~~~~ 263 (271)
.+.+|+++|++||+++..
T Consensus 457 ~~~~~~~~~~~p~~Ga~~~~~ 477 (478)
T 2a2c_A 457 APEKQSLFATKPGGGALVLLE 477 (478)
T ss_dssp ---CCSEEEECCBCCCEEEEE
T ss_pred cCCCCcEEEEcCCCCeEeecc
Confidence 358999999999999854
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.63 E-value=1.9e-16 Score=150.59 Aligned_cols=92 Identities=40% Similarity=0.650 Sum_probs=80.5
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCC-CCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCe
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLP-GVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPT 248 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~-GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~ 248 (271)
|+..|++++.+|++.+++++|++|.|++.+++ . |++|+||||||||||+++|++++.++++++++.+.|.+.+ .+.
T Consensus 325 lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~-~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g~~~~ 403 (419)
T 1pie_A 325 FGELLNASHASLKDDYEVTGLELDTLAETAQK-QAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGYPAS 403 (419)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-STTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSSCCE
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-cCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcCCCCe
Confidence 46678888888888899999999999999999 6 9999999999999999999998889999999998887642 578
Q ss_pred EEEEecCCCeEEEecc
Q psy8462 249 FFVSDAYQGATHVSLE 264 (271)
Q Consensus 249 ~~~~~p~~Ga~~~~~~ 264 (271)
+|+++|++|+++++++
T Consensus 404 ~~~~~~~~Ga~v~~~~ 419 (419)
T 1pie_A 404 FYVAQIGSGSTKLDVE 419 (419)
T ss_dssp EEECCBCCCSBCC---
T ss_pred EEEEcCCCCeeeccCC
Confidence 9999999999987653
No 4
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.59 E-value=1.4e-15 Score=139.51 Aligned_cols=88 Identities=31% Similarity=0.471 Sum_probs=78.6
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--CCeE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP--TPTF 249 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~--~~~~ 249 (271)
++..|+.++.+|++.+++++|++|.+++.+++ .|++|+||||||||||+++|++++.++++++++.+.|.+.+ .+.+
T Consensus 261 lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (350)
T 2cz9_A 261 VGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWKARH 339 (350)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHCCSCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHhhCCCCcE
Confidence 46667777888888899999999999999999 79999999999999999999998888999999999887653 6889
Q ss_pred EEEecCCCeEE
Q psy8462 250 FVSDAYQGATH 260 (271)
Q Consensus 250 ~~~~p~~Ga~~ 260 (271)
|+++|++|+++
T Consensus 340 ~~~~~~~Ga~~ 350 (350)
T 2cz9_A 340 FIVEPSDGVGI 350 (350)
T ss_dssp EEECEECCSBC
T ss_pred EEecCCCCCCC
Confidence 99999999873
No 5
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.57 E-value=3.8e-15 Score=140.51 Aligned_cols=88 Identities=39% Similarity=0.749 Sum_probs=78.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFV 251 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~ 251 (271)
++..|+++|++|++.+++++|++|.+++.+++.+|++|+||||||||||+++|++++.++++++++++.|.. .+.+|+
T Consensus 310 lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~~~--~~~~~~ 387 (399)
T 1wuu_A 310 FGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGG--TATFYL 387 (399)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSS--CCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHhCC--CCcEEE
Confidence 567788888888888999999999999999983499999999999999999999988889999999998843 478999
Q ss_pred EecCCCeEEE
Q psy8462 252 SDAYQGATHV 261 (271)
Q Consensus 252 ~~p~~Ga~~~ 261 (271)
+.|++|++++
T Consensus 388 ~~~~~Ga~~~ 397 (399)
T 1wuu_A 388 SQAADGAKVL 397 (399)
T ss_dssp ECCCCCSEEC
T ss_pred EcCCCCeeec
Confidence 9999999986
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=4e-15 Score=139.42 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccCccchhhhhhh-hhcCCCC-ccccchhHHhhhccch---------hhHHhhHHHHHhhhccc-ccCCc
Q psy8462 124 LPVVTVLLGSRNNSNQIHLHSDS-ARADKPT-DISFDIPKVQKLTPGA---------PKWANYVKGVVSIFNDD-YEVSC 191 (271)
Q Consensus 124 L~Lll~~tG~~r~ssai~vv~e~-~r~~~~~-~l~~~i~~i~~L~~~a---------~~lg~~l~~~g~lL~~~-~~VS~ 191 (271)
+.++++++|.++.++.+ +.+. .+.++.. .....+..+.+.+..+ ..|+..|++.++++++. ++|||
T Consensus 197 ~~lvi~~t~~~~~a~~~--l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~ 274 (357)
T 3k85_A 197 SSMVLYFTGRSRSSAAI--INEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITN 274 (357)
T ss_dssp HTEEEECC-----------------------CCTTHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-------
T ss_pred ceEEEEECCCcccHHHH--HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 57899999999887743 4332 1111111 1111123332322221 22577788888888875 99999
Q ss_pred hhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEec-CCCeEEEec
Q psy8462 192 KELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDA-YQGATHVSL 263 (271)
Q Consensus 192 peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p-~~Ga~~~~~ 263 (271)
|++|.|++.|++ +||+||||||||+|||+++|++++.+++++++|++... .++.+++ ..|+++..+
T Consensus 275 p~ld~l~~~a~~-~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~G~~v~~~ 341 (357)
T 3k85_A 275 PMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNG-----FVMPFQFIDDGAHGWKI 341 (357)
T ss_dssp ----CCSCTTTT-SCCSEEEECCCC---CEEEECCHHHHHHHHHHHHTSSS-----CBCCCCBCCCCCEEEEC
T ss_pred HHHHHHHHHHHh-cCCeEeEecccCCCCEEEEEecHHHHHHHHHHHHHCCC-----eEEEeEEcCCceEEEEe
Confidence 999999999999 79999999999999999999998888999999977542 4556665 478888543
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.49 E-value=6.6e-14 Score=131.70 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=77.1
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFV 251 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~ 251 (271)
++..|++++.+|++ +++++|++|.+++.+++ .|+ |+||||||||||+++|++++..+++++++.+.|.+.. ..+|+
T Consensus 294 lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~ 369 (395)
T 1kvk_A 294 LEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCG-FDCWE 369 (395)
T ss_dssp HHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTT-CEEEE
T ss_pred HHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcC-CEEEE
Confidence 57778888888886 99999999999999999 799 9999999999999999998877788888877776542 45788
Q ss_pred Ee-cCCCeEEEeccCC
Q psy8462 252 SD-AYQGATHVSLEDW 266 (271)
Q Consensus 252 ~~-p~~Ga~~~~~~~~ 266 (271)
++ +++|+++...++.
T Consensus 370 ~~~~~~G~~v~~~~~~ 385 (395)
T 1kvk_A 370 TSIGAPGVSMHSATSI 385 (395)
T ss_dssp EEESCCCSEEECTTTS
T ss_pred EecCCCcEEEEecccc
Confidence 88 6899999876554
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.49 E-value=3.2e-14 Score=128.74 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEcCCccCccchhhhhhhhhcCCCCccccchhHHhhhccch---------hhHHhhHHHHHhhhcc-cccC
Q psy8462 120 HKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGA---------PKWANYVKGVVSIFND-DYEV 189 (271)
Q Consensus 120 ~k~~L~Lll~~tG~~r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a---------~~lg~~l~~~g~lL~~-~~~V 189 (271)
.+..+++++++++.++.++.. +........ ... +..+..++.++ ..|+++|+++|++|++ .++|
T Consensus 196 ~~~~~~l~~~~~~~~~~t~~~--v~~v~~~~~-~~~---~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~i 269 (335)
T 3gon_A 196 PTLECDFLVGWTKEVAVSSHM--VQQIKQNIN-QNF---LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDI 269 (335)
T ss_dssp CCSCCEEEEEECCCCCCHHHH--HHHHGGGCC-HHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred CccccceEEeecCChhhHHHH--HHHHHHHhH-HHH---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcC
Confidence 345678999999999877632 332211111 111 22233333222 2257788888899988 6799
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhc
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y 241 (271)
|||++|.|+++|++ .|+ ||||||||||||+|||+++ +..+.+.++++++.
T Consensus 270 s~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~G 320 (335)
T 3gon_A 270 YTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLG 320 (335)
T ss_dssp CCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999 686 8999999999999999975 34566777777654
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.43 E-value=3.3e-13 Score=124.49 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCccCccchhhhhhhhh-cCCCCc-cccchhHHhhhccchhh---------HHhhHHHHHhhhcccccCCc
Q psy8462 123 CLPVVTVLLGSRNNSNQIHLHSDSAR-ADKPTD-ISFDIPKVQKLTPGAPK---------WANYVKGVVSIFNDDYEVSC 191 (271)
Q Consensus 123 ~L~Lll~~tG~~r~ssai~vv~e~~r-~~~~~~-l~~~i~~i~~L~~~a~~---------lg~~l~~~g~lL~~~~~VS~ 191 (271)
.+.+++++++.++.++.. ++.... .+.... ....+..+.+++..+.. ++..|+..+.++ +.+++++
T Consensus 180 ~~~~vlv~p~~~~sT~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~-~~~~v~~ 256 (321)
T 4hac_A 180 DCGIVIGDTGVFSSTKEL--VANVRQLRESYPDLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMNVNQGLL-DALGVNI 256 (321)
T ss_dssp CCEEEEEECCCCCCHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCCC
T ss_pred CCEEEEEECCCCccHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hhcCCCC
Confidence 678999999999877643 222110 011001 10112333333333222 344555554443 4689999
Q ss_pred hhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEecC-CCeEE
Q psy8462 192 KELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAY-QGATH 260 (271)
Q Consensus 192 peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p~-~Ga~~ 260 (271)
|++|++++.|++ +||+|+||||+|+|||+++|++++.++++.+++++.+ ..+|.+++. +|+++
T Consensus 257 p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~g-----~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 257 LELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGAG-----GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHTT-----CEEEEECBCSCSSEE
T ss_pred HHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhCC-----CeEEEEEECCCceec
Confidence 999999999999 7999999999999999999997788899999998764 368888874 68775
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.29 E-value=4.5e-12 Score=115.69 Aligned_cols=87 Identities=23% Similarity=0.443 Sum_probs=67.5
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcccCCCCeEE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCVSNPTPTFF 250 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~~~~~~~~~ 250 (271)
++..|...+.+++. +++++|+++.+++.+++ .|++|+||+|+|+|||+++|++.+ .++++.+++.+.|........+
T Consensus 245 l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~~~~~~~~ 322 (332)
T 2hfs_A 245 LGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAKFIWRY 322 (332)
T ss_dssp HHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhcCCceEEE
Confidence 45556666666665 78999999999999999 799999999999999999999875 4678999998887653112346
Q ss_pred EEecCCCeEE
Q psy8462 251 VSDAYQGATH 260 (271)
Q Consensus 251 ~~~p~~Ga~~ 260 (271)
.+.+++||++
T Consensus 323 ~~~~~~g~~~ 332 (332)
T 2hfs_A 323 TVQPSAASNL 332 (332)
T ss_dssp EECCSCC---
T ss_pred EeccCCCCCC
Confidence 6788999864
No 11
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.25 E-value=3.3e-12 Score=120.17 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=76.5
Q ss_pred CeEEEEcCCccCccchhhhhhh-hhcCCCCcccc-chhHHhhhccch---------hhHHhhHHHHHhhhcccccC----
Q psy8462 125 PVVTVLLGSRNNSNQIHLHSDS-ARADKPTDISF-DIPKVQKLTPGA---------PKWANYVKGVVSIFNDDYEV---- 189 (271)
Q Consensus 125 ~Lll~~tG~~r~ssai~vv~e~-~r~~~~~~l~~-~i~~i~~L~~~a---------~~lg~~l~~~g~lL~~~~~V---- 189 (271)
.++++++|.++.++.. ++.. ...+...+... .+..+.+++..+ ..++..|++.+++|++ +++
T Consensus 214 ~lll~~t~~~~sT~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~-l~v~~~~ 290 (365)
T 3k17_A 214 TFSVGWTGTPVSTGKL--VSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE-LGTKAGV 290 (365)
T ss_dssp EEEEEECSCCCCHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHTC
T ss_pred cEEEEECCCccchHHH--HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hhhhcCC
Confidence 7999999999877643 3221 11111001011 122333222222 2256778888888886 776
Q ss_pred --CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcc
Q psy8462 190 --SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCV 242 (271)
Q Consensus 190 --S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~ 242 (271)
|+|++|.|++.|++ .|++ |||||||||||+++|++++ .++++.+++++...
T Consensus 291 ~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~g~ 344 (365)
T 3k17_A 291 NIETSLLKELADSAEN-MGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGI 344 (365)
T ss_dssp CCSCHHHHHHHHHHHH-TTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHh-cCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
Confidence 99999999999999 7999 9999999999999999864 46777777776543
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.22 E-value=2.6e-11 Score=109.52 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=65.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcccCCCCeEE
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVSNPTPTFF 250 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~~~~~~~~~ 250 (271)
++..++.++..+++ +++++|+++.+++.+++ .|++|+||+|+|+|||+++|++. +.++++.+++++.|. ..++
T Consensus 229 l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~~----~~~~ 302 (308)
T 2x7i_A 229 LADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGA----AHTW 302 (308)
T ss_dssp HHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTTC----SEEE
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCCC----ceEe
Confidence 56678888888887 79999999999999999 79999999999999999999987 677889999988764 2456
Q ss_pred EEec
Q psy8462 251 VSDA 254 (271)
Q Consensus 251 ~~~p 254 (271)
++..
T Consensus 303 ~~~~ 306 (308)
T 2x7i_A 303 IENL 306 (308)
T ss_dssp EEEC
T ss_pred eEeC
Confidence 6554
No 13
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.20 E-value=2.3e-11 Score=112.91 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcCCccCccchhhhhhhhhcCCCCccccchhHHhhhccch---------hhHHhhHHHHHhhhcccc-cCC
Q psy8462 121 KQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGA---------PKWANYVKGVVSIFNDDY-EVS 190 (271)
Q Consensus 121 k~~L~Lll~~tG~~r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a---------~~lg~~l~~~g~lL~~~~-~VS 190 (271)
+..+.++++++|.++.+.. +++....... ... +..+.+++..+ ..+++.|+..+++|++.. +++
T Consensus 199 ~~~~~lvl~~~~~~~~T~~--~~~~~~~~~~-~~~---~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~ 272 (337)
T 2pg9_A 199 TLECDFLVGWTKEVAVSSH--MVQQIKQNIN-QNF---LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIY 272 (337)
T ss_dssp CSCCEEEEEECCCCCCHHH--HHHHHGGGCC-HHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred CCCceEEEEECCCccchHH--HHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCC
Confidence 3467899999999887653 3333221111 111 22333333322 224667777777777532 399
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcccCCCCeEEEEecCCC
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCVSNPTPTFFVSDAYQG 257 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~~~~~~~~~~~~p~~G 257 (271)
+|++|.|++.|++ .|++ |||||||||||+++|++++ .++++.+++++.... .+|+...+++
T Consensus 273 ~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~~ 334 (337)
T 2pg9_A 273 TPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIE----LLYQERIGHD 334 (337)
T ss_dssp CHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCE----EEEEEEC---
T ss_pred CHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHHHHHHHHHHCCCE----EEEEeecccc
Confidence 9999999999999 7999 9999999999999999764 567788888775432 3566665443
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.14 E-value=9.4e-11 Score=104.54 Aligned_cols=69 Identities=30% Similarity=0.563 Sum_probs=60.9
Q ss_pred HHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecC-CCHHHHHHHHHHhcc
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCV 242 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~-~~~~~v~eal~~~y~ 242 (271)
++..|+.++..|++ +++++|+++++++.+++ .|++|+||+|+|+|||+++|+++ +.++++.+++++.|.
T Consensus 215 l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 215 LGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp HHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 56677777777876 79999999999999999 79999999999999999999987 677889999988775
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.13 E-value=1.7e-10 Score=104.53 Aligned_cols=119 Identities=16% Similarity=0.369 Sum_probs=81.3
Q ss_pred CCeEEEEcCCccCccchhhhhhhhhcCCCCccccchhHHhhhcc------chhhHHhhHHHHHhhhcccccCCchhHHHH
Q psy8462 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP------GAPKWANYVKGVVSIFNDDYEVSCKELDDI 197 (271)
Q Consensus 124 L~Lll~~tG~~r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~------~a~~lg~~l~~~g~lL~~~~~VS~peiD~L 197 (271)
..+++++++.++.+..+ ++........... +..+..+.. +...++..|+.++..+++ +++|+|+++++
T Consensus 192 ~~~vl~~~~~~~~T~~~--~~~~~~~~~~~~~---~~~~~~~~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~ 265 (317)
T 1kkh_A 192 KFLIVYAEKRKKKTAEL--VNEVAKIENKDEI---FKEIDKVIDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRI 265 (317)
T ss_dssp CEEEEEEECCCSCHHHH--HHHHHTCTTHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHH
T ss_pred cEEEEEECCCcCcHHHH--HHHHHHhhccHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHH
Confidence 36888899988766532 3321111110111 122222211 122257778887777775 89999999999
Q ss_pred HHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEecC
Q psy8462 198 AHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAY 255 (271)
Q Consensus 198 v~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p~ 255 (271)
++.+++ .| +|+||+|+|+|||+++|++++.++++.+++++.+ ..+|+++..
T Consensus 266 ~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~~g-----~~~~~~~~~ 316 (317)
T 1kkh_A 266 VDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNKED-----VRIFNCRMM 316 (317)
T ss_dssp HHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHTSS-----CEEEEECBC
T ss_pred HHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHhcC-----CEEEEEEec
Confidence 999999 69 9999999999999999998877888888887644 246666553
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=98.68 E-value=6.3e-08 Score=86.64 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCccCccchhhhhhhhhcCCCCccccchhHHhhhccchhh-H-HhhHHHHHhhh-ccc-----ccCCchh
Q psy8462 122 QCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPK-W-ANYVKGVVSIF-NDD-----YEVSCKE 193 (271)
Q Consensus 122 ~~L~Lll~~tG~~r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~-l-g~~l~~~g~lL-~~~-----~~VS~pe 193 (271)
..+.+++++++....|. .+++. ..+.......+..+..+. .+.. | .+++..++++| ++. ..+++|+
T Consensus 164 ~~~~~vl~~p~~~~~T~--~~~~~---l~~~~~~~~~~~~~~~~~-~~~~al~~~d~~~~~~~~~~n~~h~~~~~~~~p~ 237 (296)
T 1h72_C 164 FKLDILIAIPNISINTK--EAREI---LPKAVGLKDLVNNVGKAC-GMVYALYNKDKSLFGRYMMSDKVIEPVRGKLIPN 237 (296)
T ss_dssp SCCCEEEECCSSCCCHH--HHHHT---SCSCCCHHHHHHHHHHHH-HHHHHHHTTCHHHHHHHHTTCCSSHHHHHTTSTT
T ss_pred CCeEEEEEeCCCCccHH--HHHHh---ccCcCcHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHhcCcchhhhhhccCcc
Confidence 46789999998765443 22221 111111101111222111 1111 2 44566666666 221 2579999
Q ss_pred HHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEecCCCeEEE
Q psy8462 194 LDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHV 261 (271)
Q Consensus 194 iD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p~~Ga~~~ 261 (271)
++.+++.+++ . ++|+||+|+|+ |+++|++++.++++.+++.+.|.. .+++++.+|++++
T Consensus 238 l~~~~~~~~~-~-a~ga~~sGsG~--~v~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 238 YFKIKEEVKD-K-VYGITISGSGP--SIIAFPKEEFIDEVENILRDYYEN-----TIRTEVGKGVEVV 296 (296)
T ss_dssp HHHHHHHHTT-T-EEEEEECTTSS--CEEEEECGGGHHHHHHHHHHHCSC-----EEEECBCCCCEEC
T ss_pred HHHHHHHHHh-h-cceEEEecCCh--heEEEecHHHHHHHHHHHHHhccC-----ceeccCCCCeEeC
Confidence 9999999998 6 89999999998 888888777888999999887753 3377888898864
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.12 E-value=9.6e-06 Score=73.97 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=65.1
Q ss_pred HhhHHHHHhhhccc-----c-cCCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCC
Q psy8462 173 ANYVKGVVSIFNDD-----Y-EVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPT 246 (271)
Q Consensus 173 g~~l~~~g~lL~~~-----~-~VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~ 246 (271)
.+++..+++.|+++ + .-.+|+++++++.+++ +||+|++|+|+| +|+++|++++.++++.+++++.+. .
T Consensus 200 ~~d~~~l~~~l~nd~~~e~~~~~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~~~~~---~ 273 (298)
T 3hul_A 200 RNDMTLAGEMMERDLWHEKYRSQLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQTLEI---D 273 (298)
T ss_dssp TTCHHHHHHHHTCCCC-----CTTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGGGHHHHHHHHHTTCC---S
T ss_pred cCCHHHHHHHHhhhHHHHHHHHhhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHHHHHHHHHHHHhcCC---C
Confidence 45667777776521 1 1358999999999999 899999999998 478999987778888888876543 2
Q ss_pred CeEEEEec-CCCeEEEec
Q psy8462 247 PTFFVSDA-YQGATHVSL 263 (271)
Q Consensus 247 ~~~~~~~p-~~Ga~~~~~ 263 (271)
..++++++ ..|+++..-
T Consensus 274 ~~~~~~~~~~~Ga~v~~~ 291 (298)
T 3hul_A 274 ADVLLLDVEGSGAEVFRE 291 (298)
T ss_dssp SEEEEEEBCCCCCEEEEC
T ss_pred cEEEEcccCCCceEEEec
Confidence 47888888 479988754
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=97.99 E-value=9.1e-06 Score=74.48 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCCccCccchhhhhhhhh---cCCCCccccchhHHhhhccchhh-H-HhhHHHHHhhhccccc----CCc
Q psy8462 121 KQCLPVVTVLLGSRNNSNQIHLHSDSAR---ADKPTDISFDIPKVQKLTPGAPK-W-ANYVKGVVSIFNDDYE----VSC 191 (271)
Q Consensus 121 k~~L~Lll~~tG~~r~ssai~vv~e~~r---~~~~~~l~~~i~~i~~L~~~a~~-l-g~~l~~~g~lL~~~~~----VS~ 191 (271)
...+.+++++.+...+|.. +++.... ....... .... .... + .+++..++..|+++++ ..+
T Consensus 165 ~~~~~~vl~~P~~~vsT~~--a~~~l~~~~~~~~~~~~----~~~~----~~~~al~~~d~~~l~~~l~n~le~~~~~~~ 234 (306)
T 3pyf_A 165 RNTFHWVLAFADSGLLTSA--VYNELDRLREVGDPPRL----GEPG----PVLAALAAGDPDQLAPLLGNEMQAAAVSLD 234 (306)
T ss_dssp SSCEEEEEEECSSCCCHHH--HHHHHHHHHHHSCCCCC----CCHH----HHHHHHHHTCHHHHGGGCEETTHHHHHHHC
T ss_pred CCCcEEEEEECCCCCcHHH--HHHhhhhhccccccccc----cCHH----HHHHHHHhCCHHHHHHHhccchHHHHHHhC
Confidence 3467888899988766553 3332111 0011111 0011 1111 2 4567777777755443 248
Q ss_pred hhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcccCCCCeEEEEec-CCCeEEEe
Q psy8462 192 KELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCVSNPTPTFFVSDA-YQGATHVS 262 (271)
Q Consensus 192 peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~~~~~~~~~~~~p-~~Ga~~~~ 262 (271)
|+++.+++.+++ +||+|++|+|+| +|+++|++.. .++++.+++.+.+.. ..++++++ ..|+++..
T Consensus 235 P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~~g~~---~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 235 PALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSGAGVC---RTVRVATGPVPGARVVS 301 (306)
T ss_dssp THHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHHTTSS---SEEEEEEECCBCSEEC-
T ss_pred hHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHhcCCc---ceEEEeecCCCCCEEec
Confidence 999999999999 899999999997 7999999764 466777888765432 46777665 77998864
No 19
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=97.73 E-value=2.7e-05 Score=69.27 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHHHhcccCCCCeEEEEecCCCe
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVKAHCVSNPTPTFFVSDAYQGA 258 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~~~y~~~~~~~~~~~~p~~Ga 258 (271)
++|+++.+++.+++ .|++|+||+|+| +|+++|++.+ .++++.+++.+ + . .+|++++++|-
T Consensus 209 ~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~-~----~-~~~~~~~~~g~ 269 (275)
T 1uek_A 209 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA-W----G-RAWAGTLGGGD 269 (275)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT-T----S-EEEEEEECCC-
T ss_pred hChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhh-c----c-EEEEEEecCCC
Confidence 47999999999999 799999999998 5999999764 45666676654 2 2 57888887663
No 20
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=97.58 E-value=8.4e-05 Score=67.42 Aligned_cols=80 Identities=6% Similarity=-0.020 Sum_probs=58.3
Q ss_pred HHhhHHHHHhhhcccccCCchh-------HHHHH---HHHHcCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhc
Q psy8462 172 WANYVKGVVSIFNDDYEVSCKE-------LDDIA---HCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHC 241 (271)
Q Consensus 172 lg~~l~~~g~lL~~~~~VS~pe-------iD~Lv---~~A~~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y 241 (271)
++..+.+.+..|++.+..++|+ ...+. ..++. .|+.|+-++|+| +|+++|++++..+++.+++.+ +
T Consensus 228 lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~~l~~~~~~~~v~~~l~~-~ 303 (317)
T 2gs8_A 228 VGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVKVLCLEKDLAQLAERLGK-N 303 (317)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEEEEEEGGGHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEEEEEcHHHHHHHHHHHhc-C
Confidence 4666666666666655555544 34554 44555 688888998875 788999988778888888876 2
Q ss_pred ccCCCCeEEEEecCCCeEE
Q psy8462 242 VSNPTPTFFVSDAYQGATH 260 (271)
Q Consensus 242 ~~~~~~~~~~~~p~~Ga~~ 260 (271)
..+|++++++|+++
T Consensus 304 -----~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 304 -----YRIIVSKTKDLPDV 317 (317)
T ss_dssp -----SEEEEEEBCCCCCC
T ss_pred -----CeEEEEecCCCCCC
Confidence 58999999999974
No 21
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=97.52 E-value=0.0002 Score=66.36 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=54.6
Q ss_pred CchhHHHHHHHHH---cCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEE-ecCCCeEEE
Q psy8462 190 SCKELDDIAHCAQ---SLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVS-DAYQGATHV 261 (271)
Q Consensus 190 S~peiD~Lv~~A~---~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~-~p~~Ga~~~ 261 (271)
-+|+++.+++.+. + +|++|+.++|+ |+++++|++++.++++.+++++.|.. ..++++ .++.|++++
T Consensus 262 l~p~~~~i~~~~~~~~~-~Ga~~a~~SGa--GPtv~~l~~~~~a~~v~~~l~~~~~~---~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 262 LVQESYDAMAIVEQCRK-ANLPCYFTMDA--GPNVKVLVEKKNKQAVMEQFLKVFDE---SKIIASDIISSGVEII 331 (332)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCCEEEECCS--SSCEEEEEEHHHHHHHHHHHHTTSCG---GGEEEEEBCSSCCEEC
T ss_pred eChHHHHHHHHHHHHHh-CCCcEEEEeCC--CCcEEEEECHHHHHHHHHHHHHhCCC---ceEEEeccccCCcEec
Confidence 4689999988884 7 79999999966 57889999877788899999877654 478888 999999875
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=96.66 E-value=0.00056 Score=60.78 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=39.1
Q ss_pred HhhHHHHHhhhcccccCC----chhHHHHHHHHHcCCCCccee-eecCCCceEEEEEecCC
Q psy8462 173 ANYVKGVVSIFNDDYEVS----CKELDDIAHCAQSLPGVLGCR-MTGGGFGGCAIALVHTD 228 (271)
Q Consensus 173 g~~l~~~g~lL~~~~~VS----~peiD~Lv~~A~~~~GalGaK-ltGaG~GG~viaLv~~~ 228 (271)
.+++..++++|++.++.+ +|+++++++.+++ .|+ ++ |+|+| +|+++|++++
T Consensus 197 ~~d~~~~~~~~~n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~ 252 (271)
T 2v8p_A 197 QRIISGEVEEIENVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGAS 252 (271)
T ss_dssp HHHHTTCGGGCCBHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCC
T ss_pred cCCHHHHHHHHhCChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCH
Confidence 334555555565545444 8999999999999 788 99 99998 7999999765
No 23
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=95.45 E-value=0.0068 Score=54.44 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCchhHHHHHHHHHcCCCCcceeeecCCCceEEEEEecCC-CHHHHHHHHH
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTD-HVNDIIAKVK 238 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKltGaG~GG~viaLv~~~-~~~~v~eal~ 238 (271)
..+|+++++++.+++ .| |++|+|+| +|++++++++ .++++.+++.
T Consensus 217 ~~~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~l~ 262 (283)
T 2ww4_A 217 KRFREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQAP 262 (283)
T ss_dssp HHCHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHHCC
T ss_pred hcChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHHhh
Confidence 358999999999998 78 89999997 7889999754 2445555553
No 24
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=93.06 E-value=0.52 Score=43.96 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHcC--C-C-CcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcccCC--------------------
Q psy8462 190 SCKELDDIAHCAQSL--P-G-VLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNP-------------------- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~--~-G-alGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~~~-------------------- 245 (271)
-.|....+++.+.+. . | +.|+-++|+|- ++++|++++..+++.+++.+.|....
T Consensus 265 l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGP--tv~~l~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (380)
T 2hke_A 265 ATEDSYAMIRLVKAYNAKKGRTALAYTFDAGA--NCFLFVLKEDLPEAVAMLMEHFPTPFEKFFFGDRELLEKVKVVSLP 342 (380)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS--CEEEEEEGGGHHHHHHHHHHHSCCCGGGEEESCHHHHHHHHHCCCC
T ss_pred ECHHHHHHHHHHHHHHHhcCCcceEEEECCCC--cEEEEECHHHHHHHHHHHHHhcccccccccccchhhhccccccCCC
Confidence 456667777665441 3 8 67788887754 56777777678889999988775330
Q ss_pred -------------CCeEEEEecCCCeEEEe
Q psy8462 246 -------------TPTFFVSDAYQGATHVS 262 (271)
Q Consensus 246 -------------~~~~~~~~p~~Ga~~~~ 262 (271)
-.++++++++.|+++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 372 (380)
T 2hke_A 343 DEYKKLIDHPKKPFEMLLQSPVGCGVKYLG 372 (380)
T ss_dssp GGGSSCSCCCCCCCSEEEEEEBCCCCEEEC
T ss_pred hhhhhhhhccCCCceEEEEcCCCCCCEecC
Confidence 11689999999999984
No 25
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=92.83 E-value=0.18 Score=47.79 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHcC---CC-CcceeeecCCCceEEEEEecCCCHHHHHHHHHHhcc
Q psy8462 191 CKELDDIAHCAQSL---PG-VLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCV 242 (271)
Q Consensus 191 ~peiD~Lv~~A~~~---~G-alGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~ 242 (271)
.|....+++.+.+. .| +.++-++|+| .++++|++++..+++.+++.+.|.
T Consensus 295 ~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 295 NDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGGHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHHHHHHHHHHHHhcc
Confidence 34557776655431 27 5677898877 567788877777888888887665
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=86.06 E-value=1.3 Score=41.04 Aligned_cols=51 Identities=12% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHH-cCCCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhccc
Q psy8462 190 SCKELDDIAHCAQ-SLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVS 243 (271)
Q Consensus 190 S~peiD~Lv~~A~-~~~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~ 243 (271)
.+.++..++..++ + .|++|+.++|||-.. ++|++++..+++.+++.+.+..
T Consensus 259 ~s~~i~~~v~~~r~~-~G~~~~~tsgAGPnv--~~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 259 NTLHILSVIEKFWNE-KGDGPVVTMDAGPNV--HLLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp HHHHHHHHHHHHHHH-HSCCCEEECCSSSCE--EEEECGGGHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHh-CCCeEEEEECCCCCe--EEEEecccHHHHHHHHHHHhHh
Confidence 3344455555545 3 689999999999885 4556678889999999876543
No 27
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=76.84 E-value=3 Score=32.69 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHcCCCCccee---eecCCC-ce-------E-----------EEEEecCCCHHHHHHHHHHhcccCC-
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCR---MTGGGF-GG-------C-----------AIALVHTDHVNDIIAKVKAHCVSNP- 245 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaK---ltGaG~-GG-------~-----------viaLv~~~~~~~v~eal~~~y~~~~- 245 (271)
|....+|.+.+++.+ +|+-|.. ..|-|- .| . +..+|+++.++++++++.+......
T Consensus 10 I~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~tg~~ 88 (119)
T 2j9c_A 10 IRPEKLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENARTGNP 88 (119)
T ss_dssp ECGGGHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST
T ss_pred ECHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcCCCC
Confidence 345678899998888 7988773 334442 12 1 6788888999999999998776533
Q ss_pred -CCeEEEEecCCCeEEEe---ccCCCccc
Q psy8462 246 -TPTFFVSDAYQGATHVS---LEDWPQYH 270 (271)
Q Consensus 246 -~~~~~~~~p~~Ga~~~~---~~~~~~~~ 270 (271)
+..+|++...+-.++-+ -.+-+|+|
T Consensus 89 GdGkiFV~pVe~~~rirtge~g~~a~~~~ 117 (119)
T 2j9c_A 89 GDGKIFVIPVERVVRVRTKEEGKEALLEH 117 (119)
T ss_dssp TCEEEEEEEECEEEETTTCCBSGGGGSCC
T ss_pred CCEEEEEEEhHHEEEecCCCcchhHhhcc
Confidence 55677766555444321 13455555
No 28
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=74.86 E-value=9.2 Score=29.38 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCchhHHHHHHHHHcCCCCcceee---ecCCC--ce-----------------EEEEEecCCCHHHHHHHHHHhcccCC-
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRM---TGGGF--GG-----------------CAIALVHTDHVNDIIAKVKAHCVSNP- 245 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKl---tGaG~--GG-----------------~viaLv~~~~~~~v~eal~~~y~~~~- 245 (271)
|....+|.+.++..+ +|+-|..+ .|-|- |. -+..+|+++.++++++++.+......
T Consensus 8 I~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~ 86 (112)
T 2eg2_A 8 IKPFKLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRV 86 (112)
T ss_dssp ECGGGHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST
T ss_pred ECHHHHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC
Confidence 345578888888888 78887733 34442 11 47777888999999999988776432
Q ss_pred -CCeEEEEecCCCe
Q psy8462 246 -TPTFFVSDAYQGA 258 (271)
Q Consensus 246 -~~~~~~~~p~~Ga 258 (271)
+..+|++...+-.
T Consensus 87 GdGkiFV~pVe~~~ 100 (112)
T 2eg2_A 87 GDGKIFIIPVEDVI 100 (112)
T ss_dssp TCCEEEEEECSCCB
T ss_pred CCEEEEEEEhHhEE
Confidence 5667666555443
No 29
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=74.24 E-value=10 Score=29.32 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHcCCCCccee---eecCCCc--e-----------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCR---MTGGGFG--G-----------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaK---ltGaG~G--G-----------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
....+|.+.+++.+ +|+-|.. ..|-|-- . -+..+|+++.++++++++.+......
T Consensus 9 ~~~~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~G 87 (116)
T 1vfj_A 9 RPEKLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAARTGEVG 87 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 45578888898888 7988773 3344421 1 58888899999999999998765432
Q ss_pred CCeEEEEecCCC
Q psy8462 246 TPTFFVSDAYQG 257 (271)
Q Consensus 246 ~~~~~~~~p~~G 257 (271)
+..+|++...+-
T Consensus 88 dGkiFV~pVe~~ 99 (116)
T 1vfj_A 88 DGKIFVLPVEKV 99 (116)
T ss_dssp CCEEEEEECSEE
T ss_pred CEEEEEEEhHHe
Confidence 556666655443
No 30
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=71.93 E-value=14 Score=28.55 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHcCCCCcce---eeecCCCce-------------------EEEEEecCCCHHHHHHHHHHhcccCC-
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGC---RMTGGGFGG-------------------CAIALVHTDHVNDIIAKVKAHCVSNP- 245 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGa---KltGaG~GG-------------------~viaLv~~~~~~~v~eal~~~y~~~~- 245 (271)
|....++.+.++..+ +|+-|. ...|-|--+ -+..+|+++.++++++++.+......
T Consensus 12 Ir~~~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~ 90 (116)
T 2ns1_B 12 IKPFKLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKI 90 (116)
T ss_dssp ECGGGHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST
T ss_pred ECHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC
Confidence 345578888888888 788776 444655322 45566788899999999988876533
Q ss_pred -CCeEEEEecCCCe
Q psy8462 246 -TPTFFVSDAYQGA 258 (271)
Q Consensus 246 -~~~~~~~~p~~Ga 258 (271)
+..+|++...+-.
T Consensus 91 GdGkiFV~pVe~~~ 104 (116)
T 2ns1_B 91 GDGKIFVAELQRVI 104 (116)
T ss_dssp TCCEEEEEEESCCB
T ss_pred CCEEEEEEEhHHEE
Confidence 6667766555443
No 31
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=71.45 E-value=11 Score=30.40 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHcCCCCcceee---ecCCCc-e-------------------EEEEEecCCCHHHHHHHHHHhcccCC
Q psy8462 189 VSCKELDDIAHCAQSLPGVLGCRM---TGGGFG-G-------------------CAIALVHTDHVNDIIAKVKAHCVSNP 245 (271)
Q Consensus 189 VS~peiD~Lv~~A~~~~GalGaKl---tGaG~G-G-------------------~viaLv~~~~~~~v~eal~~~y~~~~ 245 (271)
|....++.+.+++.+ +|+.|..+ .|-|-- | -+..+|+++.++++++++.+......
T Consensus 20 Ir~~k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~tg~ 98 (135)
T 2o66_A 20 VRPWRIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGE 98 (135)
T ss_dssp ECGGGHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS
T ss_pred ECHHHHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCCCC
Confidence 345577888888888 78888743 455532 2 36777888999999999998877533
Q ss_pred --CCeEEEEecCCCeE
Q psy8462 246 --TPTFFVSDAYQGAT 259 (271)
Q Consensus 246 --~~~~~~~~p~~Ga~ 259 (271)
+..+|++...+-.+
T Consensus 99 ~GdGkIFV~pVe~~vr 114 (135)
T 2o66_A 99 IGDGKIFVLPVSDVIR 114 (135)
T ss_dssp TTCCEEEEEEECEEEE
T ss_pred CCCEEEEEEEhHHEEE
Confidence 56777765554433
No 32
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=70.50 E-value=13 Score=28.49 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=46.5
Q ss_pred CchhHHHHHHHHHcCCCCccee---eecCCC-ce------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCR---MTGGGF-GG------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaK---ltGaG~-GG------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
....++.+.++..+ +|+.|.. ..|-|- .| -+..+|+++.++++++++.+......
T Consensus 11 r~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~G 89 (114)
T 3bzq_A 11 KPFTLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIG 89 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCCCC
Confidence 44578888888888 7887773 334442 22 37777888999999999988776433
Q ss_pred CCeEEEEecCCCe
Q psy8462 246 TPTFFVSDAYQGA 258 (271)
Q Consensus 246 ~~~~~~~~p~~Ga 258 (271)
+..+|++...+-.
T Consensus 90 dGkiFV~pVe~~~ 102 (114)
T 3bzq_A 90 DGKVWVSPVDTIV 102 (114)
T ss_dssp CCEEEEEEESCCB
T ss_pred CEEEEEEEhHHeE
Confidence 5667766555443
No 33
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=68.72 E-value=7.7 Score=30.84 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHcCCCCcceeeecCCCce----E-EEEEecCCCHHHHHHHHHHhcccC
Q psy8462 191 CKELDDIAHCAQSLPGVLGCRMTGGGFGG----C-AIALVHTDHVNDIIAKVKAHCVSN 244 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~GalGaKltGaG~GG----~-viaLv~~~~~~~v~eal~~~y~~~ 244 (271)
...+|.+.++..+ +|..|-+++-.|++| . +...|+++.++++++.+.+....+
T Consensus 15 p~kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 15 DKDANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 4567888887777 798887777544333 3 445567889999999998876644
No 34
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=68.24 E-value=16 Score=27.99 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=45.2
Q ss_pred CchhHHHHHHHHHcCCCCcceee---ecCCC-ce------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRM---TGGGF-GG------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKl---tGaG~-GG------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
....++.+.++..+ +|+-|..+ .|-|- +| -+..+|+++.++++++++.+......
T Consensus 9 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~G 87 (112)
T 1hwu_A 9 KPFKLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAARTGKIG 87 (112)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 45578888888888 79887733 45553 22 45566688899999999998776433
Q ss_pred CCeEEEEecCCC
Q psy8462 246 TPTFFVSDAYQG 257 (271)
Q Consensus 246 ~~~~~~~~p~~G 257 (271)
+..+|++...+-
T Consensus 88 dGkiFV~~V~~~ 99 (112)
T 1hwu_A 88 DGKIFVQEVEQV 99 (112)
T ss_dssp CCEEEEEECSEE
T ss_pred CEEEEEEEhHHE
Confidence 566766655443
No 35
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=66.22 E-value=15 Score=28.25 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=46.1
Q ss_pred CchhHHHHHHHHHcCCCCccee---eecCCC-ce------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCR---MTGGGF-GG------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaK---ltGaG~-GG------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
....+|.+.+++.+ +|+.|.. ..|-|- .| -+..+|+++.++++++++.+......
T Consensus 11 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg~~G 89 (114)
T 2gw8_A 11 KPFKLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSGKIG 89 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCCCCC
Confidence 45578888888888 7988773 334442 12 45566688899999999988776532
Q ss_pred CCeEEEEecCCCeE
Q psy8462 246 TPTFFVSDAYQGAT 259 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~ 259 (271)
+..+|++...+-.+
T Consensus 90 dGkiFV~pVe~~~r 103 (114)
T 2gw8_A 90 DGKIFVLPVEEAIR 103 (114)
T ss_dssp CCEEEEEEESCCBC
T ss_pred CEEEEEEEhHHeEE
Confidence 56677665554433
No 36
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=65.52 E-value=7 Score=37.50 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=41.9
Q ss_pred HHHhhhccc---ccCCchhHHHHHHHHHcC----CCCcceeeecCCCceEEEEEecCCCHHHHHHHHHHhccc
Q psy8462 178 GVVSIFNDD---YEVSCKELDDIAHCAQSL----PGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVS 243 (271)
Q Consensus 178 ~~g~lL~~~---~~VS~peiD~Lv~~A~~~----~GalGaKltGaG~GG~viaLv~~~~~~~v~eal~~~y~~ 243 (271)
.+|+.++.. +-.=+|+...+++.+.+. .|++++.++|||-..+ +|++++..+++.++|.+.+..
T Consensus 276 ~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGPnv~--vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 276 QFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAV--IFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp HHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEE--EEEEHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCCCEE--EEEecccHHHHHHHHHHhcCC
Confidence 466665542 112256656666555542 2788999999998755 446677888999998765553
No 37
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=64.55 E-value=15 Score=28.91 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHcCCCCccee---eecCCC-ce------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCR---MTGGGF-GG------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaK---ltGaG~-GG------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
-...+|.+.++..+ +|+.|.. ..|.|- .| -+...|+++.++++++++.+.-....
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~~G 87 (118)
T 3t9z_A 9 RPEKLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKFG 87 (118)
T ss_dssp CGGGHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCCCC
Confidence 44578888888888 7988863 446553 12 25666788899999999988655432
Q ss_pred CCeEEEEecCCCeE
Q psy8462 246 TPTFFVSDAYQGAT 259 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~ 259 (271)
+..+|++...+-.+
T Consensus 88 DGkIFV~~Ve~~vr 101 (118)
T 3t9z_A 88 DGRIFVIPVEKSVK 101 (118)
T ss_dssp CCEEEEEECCEEEE
T ss_pred CeEEEEEEhHHeEE
Confidence 77888776655444
No 38
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=61.03 E-value=15 Score=29.00 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHcCCCCcce---eeecCCCc-e------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGC---RMTGGGFG-G------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGa---KltGaG~G-G------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
-...+|.+.++..+ +|+.|. ...|.|-- | -+...|+++.++++++++.+.-....
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~~G 87 (119)
T 3ncq_A 9 RAEKFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGSPG 87 (119)
T ss_dssp CTTTHHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 34578888888888 798886 44466641 2 25667788899999999988665432
Q ss_pred CCeEEEEecCCCeEE
Q psy8462 246 TPTFFVSDAYQGATH 260 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~~ 260 (271)
+..+|++...+-.++
T Consensus 88 DGkIFV~~Ve~~vrI 102 (119)
T 3ncq_A 88 DGKIFIIPVEDVVRI 102 (119)
T ss_dssp CCEEEEEECSEEEET
T ss_pred CCEEEEEEhHheEEe
Confidence 778888776655443
No 39
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=55.96 E-value=36 Score=26.56 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHcCCCCcce---eeecCCCc-e------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGC---RMTGGGFG-G------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGa---KltGaG~G-G------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
-...+|.+.++..+ +|+.|. ...|-|-- | -+...|+++.++++++++.+.-....
T Consensus 9 rp~kl~~vk~AL~~-~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~G 87 (116)
T 4aff_A 9 RPFKLDEVKIALVN-AGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGENG 87 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 34578888888888 798876 44466632 3 24566788899999999988765432
Q ss_pred CCeEEEEecCCCeEE
Q psy8462 246 TPTFFVSDAYQGATH 260 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~~ 260 (271)
+..+|++...+-.++
T Consensus 88 DGkIFV~~Ve~~vrI 102 (116)
T 4aff_A 88 DGKIFVSPVDQTIRI 102 (116)
T ss_dssp CEEEEEEECSCCBCT
T ss_pred CeEEEEEEhHHeEEe
Confidence 677887776665443
No 40
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=54.11 E-value=39 Score=26.53 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHcCCCCcceeee---cCCCc-e----------EEEEEecCCCHHHHHHHHHHhcccCCCCeEEEE
Q psy8462 190 SCKELDDIAHCAQSLPGVLGCRMT---GGGFG-G----------CAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVS 252 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGaKlt---GaG~G-G----------~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~ 252 (271)
..+.+|.+.+++.+ +|+-|.-++ |-|-. | .+..+|+++.++++++++.+.........+|++
T Consensus 33 r~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~tg~~GkIFV~ 108 (119)
T 2cz4_A 33 ESLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFPHYAVIAYVE 108 (119)
T ss_dssp EGGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTTTSCCEEEEE
T ss_pred CHHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 46688999998888 798887333 33321 1 567778888999999999855443212445554
No 41
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=42.98 E-value=55 Score=25.15 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=47.4
Q ss_pred CchhHHHHHHHHHcCCCCcce---eeecCCC--ce-----------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 190 SCKELDDIAHCAQSLPGVLGC---RMTGGGF--GG-----------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 190 S~peiD~Lv~~A~~~~GalGa---KltGaG~--GG-----------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
-...+|.+.++..+ +|+.|- ...|-|- |+ -+...|+++.++++++++.+.-....
T Consensus 9 r~~kl~~vk~AL~~-~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~v~~vv~~I~~~~~tg~~G 87 (112)
T 3mhy_A 9 KPFKLDEVREALTS-LGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDDQYEQVVEAIQKAANTGRIG 87 (112)
T ss_dssp CGGGHHHHHHHHHH-HTCCCEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTTTHHHHHHHHHHHHCCSSTT
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEEEEeEccccCCcceeccceeeecccceEEEEEEEchHHHHHHHHHHHHHhcCCCCC
Confidence 44578888887777 788776 3446663 21 25667788999999999987765432
Q ss_pred CCeEEEEecCCCeE
Q psy8462 246 TPTFFVSDAYQGAT 259 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~ 259 (271)
+..+|++...+-.+
T Consensus 88 dGkIfV~~v~~~~r 101 (112)
T 3mhy_A 88 DGKIFVLDIAQAVR 101 (112)
T ss_dssp CCEEEEEECSEEEE
T ss_pred CeEEEEEEhHheEE
Confidence 77788776655444
No 42
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=34.90 E-value=74 Score=24.65 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHcCCCC-cce---eeecCCCc-e------------------EEEEEecCCCHHHHHHHHHHhcccCC--
Q psy8462 191 CKELDDIAHCAQSLPGV-LGC---RMTGGGFG-G------------------CAIALVHTDHVNDIIAKVKAHCVSNP-- 245 (271)
Q Consensus 191 ~peiD~Lv~~A~~~~Ga-lGa---KltGaG~G-G------------------~viaLv~~~~~~~v~eal~~~y~~~~-- 245 (271)
...+|.+.++..+ +|+ .|- ...|.|-- | -+...|+++.++++++++.+.-....
T Consensus 12 p~kl~~Vk~AL~~-~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pk~kieivV~d~~ve~vv~~I~~~a~tg~~G 90 (115)
T 3l7p_A 12 SDKLEDLKAALVQ-SGFIKGMTISQVLGFGNQRGYTEYVRGQKITPTLLAKVKVEIVAHDAAVEEMITTISQAVKTGEVG 90 (115)
T ss_dssp GGGHHHHHHHHHH-HTCGGGEEEEEEEEEC----------------CEEEEEEEEEEECGGGHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHH-CCCCccEEEEEEEeEcccCCCceeeccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCCC
Confidence 4467888887777 687 665 44455531 2 24566788899999999988765432
Q ss_pred CCeEEEEecCCCeEE
Q psy8462 246 TPTFFVSDAYQGATH 260 (271)
Q Consensus 246 ~~~~~~~~p~~Ga~~ 260 (271)
+..+|++...+-.++
T Consensus 91 DGkIFV~~ve~~vrI 105 (115)
T 3l7p_A 91 DGKIFVSPVDEIVRI 105 (115)
T ss_dssp -CEEEEEECSEEEEC
T ss_pred CcEEEEEEhHheEEe
Confidence 777887776655544
No 43
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=21.26 E-value=97 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.0
Q ss_pred CChHHHhHHHHHHHHhhcCCC--ceeeCCC
Q psy8462 44 QTKKQRKEAEVKALLEKIQPE--MISLDPQ 71 (271)
Q Consensus 44 ~~~~~r~e~ev~~ll~k~~~~--~i~l~~~ 71 (271)
.+..|+++.|=.++|.+||++ .|.||..
T Consensus 45 ~~~~~~~~~E~~~il~~i~~~~~vI~LD~~ 74 (163)
T 1o6d_A 45 GSIEEIVRKETEDLTNRILPGSFVMVMDKR 74 (163)
T ss_dssp SCHHHHHHHHHHHHHTTCCTTCEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 467889999999999999987 5899975
Done!