RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8462
(271 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 111 bits (279), Expect = 2e-28
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
DDYEVSC ELD + A ++PGV G RMTGGGFGGC + L+ + ++ H
Sbjct: 323 DDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY--G 380
Query: 245 PTPTFFVSDAYQGATHVSL 263
T TF++S A GA + L
Sbjct: 381 GTATFYLSQAADGAKVLCL 399
Score = 57.0 bits (138), Expect = 1e-09
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSI 182
L ++TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+
Sbjct: 64 LELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQY 123
Query: 183 F 183
+
Sbjct: 124 Y 124
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 110 bits (278), Expect = 2e-28
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHC--V 242
DDYEV+ ELD +A AQ GVLG RMTG GFGGCAIALV D+V+ V V
Sbjct: 338 DDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV 397
Query: 243 SNPTPTFFVSDAYQGATHVSLE 264
+F+V+ G+T + +E
Sbjct: 398 VGYPASFYVAQIGSGSTKLDVE 419
Score = 54.4 bits (131), Expect = 1e-08
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 183
+ + T L ++ L+S++ K I FD+ +V+K W+NYVKG++ +
Sbjct: 76 ITIGTTGLARLREDKKVKLYSENF--PKLGVIEFDLDEVEK--KDGELWSNYVKGMIVML 131
Query: 184 ND 185
Sbjct: 132 KG 133
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 102 bits (256), Expect = 1e-25
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVS- 243
+YEVSCKELD A L G G R+TG GFGG AIALV + I ++ +
Sbjct: 274 KNYEVSCKELDFFVERALKL-GAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKR 332
Query: 244 -NPTPTFFVSDAYQGA 258
F+ + G
Sbjct: 333 FPWKARHFIVEPSDGV 348
Score = 40.4 bits (95), Expect = 4e-04
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 183
+ + T + ++ ++ L+S + F + ++K W +YVKG+ +
Sbjct: 29 INLYTKIEAEKHG--EVILYS----EHFGEERKFSLNDLRK----ENSWIDYVKGIFWVL 78
Query: 184 ND 185
+
Sbjct: 79 KE 80
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 85.0 bits (211), Expect = 2e-19
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 186 DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAH 240
+S +LD I G ++TG G GGC I LV+ + +++ ++
Sbjct: 254 KLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKE 306
Score = 34.2 bits (79), Expect = 0.035
Identities = 5/57 (8%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 180
+ + + + ++I L+ D + ++ +++ + P Y +
Sbjct: 33 IDLTSTIEIKETQEDEIILNL----NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAI 85
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 85.3 bits (211), Expect = 5e-19
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 184 NDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAH--- 240
D YE SC ELD + + G G R+TG G+GGC +++V D + +A V
Sbjct: 392 RDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQ 450
Query: 241 ----CVSNPTPTFFVSDAYQGA 258
++ + F + GA
Sbjct: 451 RSDGSLAPEKQSLFATKPGGGA 472
Score = 46.4 bits (110), Expect = 4e-06
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 183
+ ++ + + L + + D S +Q + P W NY +
Sbjct: 83 VEQDVLIAVEPVKTYALQLANTN---PLYPDFSTSANNIQ-IDKTKPLWHNYFLCGLKGI 138
Query: 184 NDDY 187
+ +
Sbjct: 139 QEHF 142
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 79.7 bits (197), Expect = 1e-17
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 186 DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAH 240
+ VS E D + A S G LG +M+GGG GGC IALV H ++ +++
Sbjct: 228 EIGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEK 282
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 80.2 bits (197), Expect = 3e-17
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 184 NDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKA---- 239
+ YE SC E + I A + G G R+TG G+GGC I LV + ++ KA
Sbjct: 430 DKLYECSCIETNQICSIALA-NGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEK 488
Query: 240 --------HCVSNPTPTFFVSDAYQGA 258
VS G
Sbjct: 489 FYNVRYPDLTDEELKDAIIVSKPALGT 515
Score = 46.7 bits (110), Expect = 4e-06
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 124 LPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIP---KVQKLTPGAPKWANYVKGVV 180
+ V + + + +A K FD+P + P +W+NY K +
Sbjct: 67 IDVDMLCAVKILDEKNPSITLTNA-DPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGL 125
Query: 181 SIFND 185
+ +
Sbjct: 126 HVAHS 130
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 78.2 bits (193), Expect = 6e-17
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHCVS 243
+VSC+EL+ I ++ G LG +++G G GG A+AL + D + I+ +KA C
Sbjct: 257 RQIDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE 315
Query: 244 NPTPTFFVSDAYQGA 258
+ +
Sbjct: 316 AKFIWRYTVQPSAAS 330
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 70.9 bits (174), Expect = 2e-14
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAKVKAHC 241
VS +++ + + G + ++TG G GG + L +I+ V+
Sbjct: 241 KALTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 69.5 bits (170), Expect = 8e-14
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 184 NDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVK 238
++ + + A G + +++G G GG + +V +++ +
Sbjct: 267 KMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALN 320
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 64.5 bits (156), Expect = 4e-12
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
+ V LD + + L ++TG G GGC I L+ + K
Sbjct: 306 NALGVGHASLDQLCQVTAA--HGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC 363
Query: 245 PTPTFFVSDAYQGA 258
+ S G
Sbjct: 364 GFDCWETSIGAPGV 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 9e-09
Identities = 39/257 (15%), Positives = 80/257 (31%), Gaps = 66/257 (25%)
Query: 28 EGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEA 87
E NY L +P +T++++ + +E+ + D QV + +V L+ ++
Sbjct: 84 EEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKL 140
Query: 88 RNKL--LVSNPGFALQFHFKPWWFNELQIFRSKYH------KQCLPVVTVLLGSR---NN 136
R L L + K + + V L +
Sbjct: 141 RQALLELRPAKNVLI-------------------DGVLGSGKTWV-ALDVCLSYKVQCKM 180
Query: 137 SNQIH-LHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELD 195
+I L + + P + + +QKL + + ++
Sbjct: 181 DFKIFWL--NLKNCNSPETV---LEMLQKL--------------LYQIDPNWTSRSDHSS 221
Query: 196 DIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVND--IIAKVKAHC---VSNPTPTFF 250
+I S+ L + + C + L +V + C ++ T
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLT--TRFKQ 276
Query: 251 VSDAYQGA--THVSLED 265
V+D A TH+SL+
Sbjct: 277 VTDFLSAATTTHISLDH 293
Score = 34.1 bits (77), Expect = 0.057
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 46/196 (23%)
Query: 32 EPNYDALEANPFQTKKQRKEAEVKAL--LEKIQPEMISL-------DPQVIT--EVHVPT 80
+PN+ + + K R + L L K +P L + + +
Sbjct: 210 DPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 81 LKEKIEARNKLLVSNPGFALQFHFK----PWWFNE---LQIFRSKY---HKQCLP--VVT 128
L + R K + A H + KY Q LP V+T
Sbjct: 269 L---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLT 324
Query: 129 V------LLGS--RNNSNQIH--LHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKG 178
++ R+ H + + + S + L P + + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-----VLEPAEYR-KMFDR- 377
Query: 179 VVSIFNDDYEVSCKEL 194
+S+F + L
Sbjct: 378 -LSVFPPSAHIPTILL 392
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 45.0 bits (106), Expect = 1e-05
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 186 DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAK 236
+ L ++A A+++ G + +G G G C IA T + + +
Sbjct: 289 GVNIETSLLKELADSAENMGG--AGKSSGSGGGDCGIAFSKTKELAEKLVN 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 55/183 (30%)
Query: 108 WFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQI--HLHSDSARADKPTDISFDIPKVQKL 165
+F EL+ YH +V L+ S + L + A+K +I
Sbjct: 169 YFEELRDLYQTYH----VLVGDLI---KFSAETLSELIRTTLDAEKVFTQGLNI------ 215
Query: 166 TPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGV----LG-----CRMTG-- 214
+W ++ + + DY + S P + L ++ G
Sbjct: 216 ----LEW---LENPSNTPDKDY---------LLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 215 -GGFGGCAIALVHTDHVNDIIAKVKAHCVSNPT--PTFF--VSDAYQGATHV---SLEDW 266
G T H ++ A ++ +FF V A + E +
Sbjct: 260 PGELRSYLKGA--TGHSQGLVT---AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 267 PQY 269
P
Sbjct: 315 PNT 317
Score = 27.3 bits (60), Expect = 6.9
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 27 REGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISL---------DPQVIT--- 74
R+ G NY + NP + + ++ ++E++ L + Q +
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 75 ----EVHVPTLKE----KIEARNKLLVS 94
+ L KI+ +L S
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDII-ELQKS 1885
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 37.3 bits (86), Expect = 0.003
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 189 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAK 236
+ L + +Q L V + +G G G C IAL +
Sbjct: 271 IYTPLLRQLKEASQDLQAV--AKSSGAGGGDCGIALSFDAQSTKTLKN 316
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 80 TLKEKIEARNKLLV--SNPGFALQ 101
LK K++A KL S P A++
Sbjct: 21 ALK-KLQASLKLYADDSAPALAIK 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 28.8 bits (63), Expect = 2.2
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 35 YDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTL----KEKIEA--R 88
+A+E F K K + LL++I+ M+ +DP + L E+I+
Sbjct: 88 AEAIENWDFS--KLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQISE 145
Query: 89 NKLLVSNPGFALQFHF---KPWWFNELQI 114
N+ + ++ K W LQ+
Sbjct: 146 NRSKAAGITKLIECLCRSDKEHWPKSLQL 174
>1wy1_A Hypothetical protein PH0671; structural genomics, riken
structural genomics/proteomics in RSGI, transferase;
1.80A {Pyrococcus horikoshii}
Length = 172
Score = 27.9 bits (63), Expect = 2.7
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 51 EAEVKALLEKIQPEMISL--------DPQVITEVHVPTLKEKIEARNKL 91
+ E+K +LE+IQ ++ + + I+E + L+ I ++
Sbjct: 49 DEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEM 97
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 28.0 bits (61), Expect = 3.6
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 35 YDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTL----KEKIEA--R 88
+A+E F K K + LL++I+ M+ +DP + L E+I+
Sbjct: 88 AEAIENWDFS--KLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQISE 145
Query: 89 NKLLVSNPGFALQF---HFKPWWFNELQI 114
N+ + ++ K W LQ+
Sbjct: 146 NRSKAAGITKLIECLCRSDKEHWPKSLQL 174
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 4.5
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 33/111 (29%)
Query: 19 QVNHSSKSREGSGEPNYDALEANPF--------QTKKQRKEAEVKALL---E-------K 60
QVN+SS+ +E S + + D + P + ++K K L+ E +
Sbjct: 121 QVNYSSEVKENSVDSD-DKAKVPPLIRIVSGLELSDTKQKGK--KFLVIAYEPFENIAIE 177
Query: 61 IQPEMISLDPQVITEVHVPTLKEKIE------ARNKLLVSNPGFALQFHFK 105
+ P I + + + E + A +KL + +QF FK
Sbjct: 178 LPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKL------YYVQFFFK 222
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 27.2 bits (61), Expect = 6.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 234 IAKVKAHCVSNPTPTFFVSDAYQGATHVSL 263
I V+ + P + +SD+ TH +
Sbjct: 3 ITAVEPFILHLPLTSESISDSTHSITHWGV 32
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase,
oxidoreductase; 1.75A {Stenotrophomonas maltophilia}
PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Length = 349
Score = 26.7 bits (59), Expect = 9.5
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 55 KALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKL 91
K ++E I+ ++ I + + + ++
Sbjct: 295 KVVVEAIERRRAYVEANGIRPAMLSCDEAAVRVSREI 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,192,122
Number of extensions: 243301
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 34
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)