RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8462
         (271 letters)



>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 176

 Score = 80.5 bits (198), Expect = 3e-19
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
           DDYEVSC ELD +   A ++PGV G RMTGGGFGGC + L+        +  ++ H    
Sbjct: 100 DDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEH--YG 157

Query: 245 PTPTFFVSDAYQGATHVSL 263
            T TF++S A  GA  + L
Sbjct: 158 GTATFYLSQAADGAKVLCL 176


>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 183

 Score = 77.0 bits (189), Expect = 7e-18
 Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHC--V 242
           DDYEV+  ELD +A  AQ   GVLG RMTG GFGGCAIALV  D+V+     V      V
Sbjct: 105 DDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV 164

Query: 243 SNPTPTFFVSDAYQGAT 259
                +F+V+    G+T
Sbjct: 165 VGYPASFYVAQIGSGST 181


>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 171

 Score = 66.7 bits (162), Expect = 3e-14
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
           ++Y VSC+ELD     A    G  G R+TG GFGG AIALV  D    I   +    ++ 
Sbjct: 96  ENYRVSCEELDFFVKKAME-LGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLAK 154

Query: 245 --PTPTFFVSDAYQGA 258
                 +FV     G 
Sbjct: 155 FSWKAKYFVVKPSDGV 170


>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 169

 Score = 57.7 bits (139), Expect = 6e-11
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
           +   V    LD +     +    L  ++TG G GGC I L+        +   K      
Sbjct: 81  NALGVGHASLDQLCQVTAA--HGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC 138

Query: 245 PTPTFFVSDAYQGAT 259
               +  S    G +
Sbjct: 139 GFDCWETSIGAPGVS 153


>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 137

 Score = 53.8 bits (129), Expect = 8e-10
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAH 240
               +S  +LD I           G ++TG G GGC I LV+ +   +++ ++   
Sbjct: 73  KKLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKE 126


>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
           {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 135

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 184 NDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAK 236
               ++    L  +   +Q        + +G G G C IAL         +  
Sbjct: 70  GLSTDIYTPLLRQLKEASQD--LQAVAKSSGAGGGDCGIALSFDAQSTKTLKN 120


>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator
           PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 86

 Score = 25.9 bits (57), Expect = 1.7
 Identities = 6/54 (11%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 188 EVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVH-TDHVNDIIAKVKAH 240
           +V   +  ++A      P ++    T G +          ++ +N+ +  + + 
Sbjct: 10  KVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSI 63


>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia
           coli [TaxId: 562]}
          Length = 86

 Score = 25.1 bits (55), Expect = 3.7
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 192 KELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHT-DHVNDIIAK 236
           K+        +SL  V     T G +      +  + D +  ++  
Sbjct: 14  KDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLIN 59


>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 253

 Score = 25.6 bits (56), Expect = 6.3
 Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 7/43 (16%)

Query: 79  PTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHK 121
             + E ++                 F  W+++ +++  + Y +
Sbjct: 46  EKVFENLKL-------KLSNIPDEDFPTWFYDSVRLIVNPYLR 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,037,264
Number of extensions: 46567
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 9
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)