BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8464
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+KEL LDN RS + LT EF L+ LS INVGLTS+ P+L L +LELSDNR+S
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 77 GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
GGL VL + P L +LNL GN+IKDL T+EPL
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+KEL LDNC+S I LT EF L+ LS INVGLTS+ P+L L +LELS+NRIS
Sbjct: 23 DVKELVLDNCKSIEGKIEGLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRIS 82
Query: 77 GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
G L VL + P L +LNL GN+IKDL T+EPL
Sbjct: 83 GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPL 114
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 20 IKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
++EL LDNC+S + I LT+EF NL+ LS INVGL S+ P+LP L +LELS+NRI G
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85
Query: 78 GLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
GL++L P L +LNL GN++KD+ TLEPL
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRI--SG 77
+ L+L + R + + L++L A + L ++ G LP L L L +NR+ S
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
+ L S P+L LNL GN + E ++
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 25 LDNCRSTNI---AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG---- 77
LD+ RS + + L E+ ++++L + LT L +L +T L+LS NR+
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA 481
Query: 78 -----GLNVLQSS-------------PKLAYLNLCGNRIKDLETLEPL 107
L VLQ+S P+L L LC NR++ ++PL
Sbjct: 482 LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPL 529
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRI--SG 77
+ L+L + R + + L++L A + L ++ G LP L L L +NR+ S
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
+ L S P+L LNL GN + E ++
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 25 LDNCRSTNI---AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG---- 77
LD+ RS + + L E+ ++++L + LT L +L +T L+LS NR+
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA 481
Query: 78 -----GLNVLQSS-------------PKLAYLNLCGNRIKDLETLEPL 107
L VLQ+S P+L L LC NR++ ++PL
Sbjct: 482 LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPL 529
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 34 AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
A ++ + LSA N G+T+++G L L LEL DN+I+ L L++ K+ L L
Sbjct: 40 AVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQIT-DLTPLKNLTKITELEL 98
Query: 94 CGNRIKDLETLEPL 107
GN +K++ + L
Sbjct: 99 SGNPLKNVSAIAGL 112
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 12 TERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELS 71
T G ++ L LD + TNI+ L + TNL+ LS N + L L LT L
Sbjct: 129 TPLAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRAD 187
Query: 72 DNRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
DN+IS ++ L S P L ++L N+I D+ L
Sbjct: 188 DNKIS-DISPLASLPNLIEVHLKDNQISDVSPL 219
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 12 TERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELS 71
T G ++ L LD + TNI+ L + TNL+ LS N ++ L L LT L+
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 72 DNRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
DN+IS ++ L S P L ++L N+I D+ L
Sbjct: 182 DNKIS-DISPLASLPNLIEVHLKNNQISDVSPL 213
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
++ + LSA G+T+++G L L LEL DN+I+ L L++ K+ L L GN
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP 96
Query: 98 IKDLETLEPL 107
+K++ + L
Sbjct: 97 LKNVSAIAGL 106
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 46 LSAINVGLTSLKGFPELP-ALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
L A+NV L PELP +LT L++S+N SG + + P L YLN N I+ L L
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSG---LSELPPNLYYLNASSNEIRSLCDL 315
Query: 105 EP 106
P
Sbjct: 316 PP 317
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 39 EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYL 91
E NL L+AI SLK P+LP LS I G N+L+ P+L L
Sbjct: 190 ELQNLPFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQNL 236
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
IA +T + TNL L+ N +T + L L RLELS N IS ++ L L
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQ 155
Query: 91 LNLCGNRIKDLETLEPL 107
LN N++ DL+ L L
Sbjct: 156 LNFSSNQVTDLKPLANL 172
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 31 TNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
++I+AL S T+L+ L+ + +T LK L L RL++S N++S ++VL L
Sbjct: 142 SDISAL-SGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLES 199
Query: 91 LNLCGNRIKDLETL 104
L N+I D+ L
Sbjct: 200 LIATNNQISDITPL 213
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTR---LELSDNRIS----GGLNVLQSSPKLAY 90
+ F L L +N+G+ +LK P L AL R LELS NR+ G L S KL
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 91 LN-----LCGNRIKDLETLEPL 107
++ + N DL++LE L
Sbjct: 210 MHAQVATIERNAFDDLKSLEEL 231
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTR---LELSDNRIS----GGLNVLQSSPKLAY 90
+ F L L +N+G+ +LK P L AL R LELS NR+ G L S KL
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 91 LN-----LCGNRIKDLETLEPL 107
++ + N DL++LE L
Sbjct: 210 MHAQVATIERNAFDDLKSLEEL 231
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 53 LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+T L L LT LE+ N+IS +N ++ KL LN+ N+I D+ L L
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQIS-DINAVKDLTKLKXLNVGSNQISDISVLNNL 286
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
EL ++T+L ++ +++ + ++ L YLNL GN+I D+ L L
Sbjct: 42 ELESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQITDISPLSNLV 88
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
G++ + G LP L L L +N+I+ + VL KL L+L N+I D+ L L
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLAGL 174
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 29 RSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKL 88
+S A +E ++ + A N + S++G LP +T+L L+ N+++ + L + L
Sbjct: 31 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKPLTNLKNL 89
Query: 89 AYLNLCGNRIKDL 101
+L L N+IKDL
Sbjct: 90 GWLFLDENKIKDL 102
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
IA +T + TNL L+ N +T + L L RLELS N IS ++ L L
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQ 155
Query: 91 LNLCGNRIKDLETLEPL 107
L+ N++ DL+ L L
Sbjct: 156 LSFSSNQVTDLKPLANL 172
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 31 TNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
++I+AL S T+L+ LS + +T LK L L RL++S N++S ++VL L
Sbjct: 142 SDISAL-SGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLES 199
Query: 91 LNLCGNRIKDLETL 104
L N+I D+ L
Sbjct: 200 LIATNNQISDITPL 213
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 173
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
IA +T + TNL L+ N +T + L L RLELS N IS ++ L L
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQ 155
Query: 91 LNLCGNRIKDLETLEPL 107
L+ N++ DL+ L L
Sbjct: 156 LSFSSNQVTDLKPLANL 172
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 31 TNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
++I+AL S T+L+ LS + +T LK L L RL++S N++S ++VL L
Sbjct: 142 SDISAL-SGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLES 199
Query: 91 LNLCGNRIKDLETL 104
L N+I D+ L
Sbjct: 200 LIATNNQISDITPL 213
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS--GGLNVLQSSPKL 88
IA +T + TNL L+ N +T + L L RLELS N IS L+ L S +L
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161
Query: 89 AYLNLCGNRIKDLETLEPL 107
++ GN++ DL+ L L
Sbjct: 162 SF----GNQVTDLKPLANL 176
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
+ L L + ++I+AL S T+L+ LS N +T LK L L RL++S N++S +
Sbjct: 136 LNRLELSSNTISDISAL-SGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVS-DI 192
Query: 80 NVLQSSPKLAYLNLCGNRIKDLETL 104
+VL L L N+I D+ L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPL 217
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
IA +T + TNL L+ N +T + L L RLELS N IS ++ L L
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQ 155
Query: 91 LNLCGNRIKDLETLEPL 107
LN GN++ DL+ L L
Sbjct: 156 LNF-GNQVTDLKPLANL 171
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 30 STNIAALTSEFTNLKILSAINVG--LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPK 87
S+N + S + L L +N G +T LK L L RL++S N++S ++VL
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTN 195
Query: 88 LAYLNLCGNRIKDLETL 104
L L N+I D+ L
Sbjct: 196 LESLIATNNQISDITPL 212
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS--GGLNVLQSSPKL 88
IA +T + TNL L+ N +T + L L RLELS N IS L+ L S +L
Sbjct: 101 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 160
Query: 89 AYLNLCGNRIKDLETLEPL 107
++ GN++ DL+ L L
Sbjct: 161 SF----GNQVTDLKPLANL 175
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
+ L L + ++I+AL S T+L+ LS N +T LK L L RL++S N++S +
Sbjct: 135 LNRLELSSNTISDISAL-SGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVS-DI 191
Query: 80 NVLQSSPKLAYLNLCGNRIKDLETL 104
+VL L L N+I D+ L
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPL 216
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 33 IAALT--SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90
IA +T + TNL L+ N +T + L L RLELS N IS ++ L L
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQ 155
Query: 91 LNLCGNRIKDLETLEPL 107
LN GN++ DL+ L L
Sbjct: 156 LNF-GNQVTDLKPLANL 171
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 30 STNIAALTSEFTNLKILSAINVG--LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPK 87
S+N + S + L L +N G +T LK L L RL++S N++S ++VL
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTN 195
Query: 88 LAYLNLCGNRIKDLETL 104
L L N+I D+ L
Sbjct: 196 LESLIATNNQISDITPL 212
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 196
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 196
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 196
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 176
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 143 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 198
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 178
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
G++ + G LP L L L +N+I+ + VL KL L+L N+I D+
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDI 166
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-----KGFPELPALTRLELSDNRISG 77
L+L C+ I+ F L L +N+ +L + +L +L+ L+ S NRI
Sbjct: 478 LDLSKCQLEQISW--GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 78 GLNVLQSSPK-LAYLNLCGNRI 98
+LQ PK LA+ NL N +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-----KGFPELPALTRLELSDNRISG 77
L+L C+ I+ F L L +N+ +L + +L +L+ L+ S NRI
Sbjct: 473 LDLSKCQLEQISW--GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 530
Query: 78 GLNVLQSSPK-LAYLNLCGNRI 98
+LQ PK LA+ NL N +
Sbjct: 531 SKGILQHFPKSLAFFNLTNNSV 552
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G++ + G LP L L L +N+I+ + VL KL L+L N+I D + PL G T
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISD---IVPLAGLT 178
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 LPALTRLELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+P L L LS+NR+ +++Q +P L LNL GN +K L+ + G
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 LPALTRLELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+P L L LS+NR+ +++Q +P L LNL GN +K L+ + G
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 LPALTRLELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+P L L LS+NR+ +++Q +P L LNL GN +K L+ + G
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 LPALTRLELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+P L L LS+NR+ +++Q +P L LNL GN +K L+ + G
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 213
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 LPALTRLELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+P L L LS+NR+ +++Q +P L LNL GN +K L+ + G
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 213
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 46 LSAINVGLTSLKGFPELPALTR------LELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+ I +G +LK FP +L + LE N++ G L S KLA LNL N+I
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 100 DL 101
++
Sbjct: 367 EI 368
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 14 RMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG 58
R+GK + LD+CR NI + S ++ I ++INVGL + G
Sbjct: 65 RIGKDAAGQFILDHCRKENI-DIQSLKQDVSIDTSINVGLVTEDG 108
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALT 66
E + ++ +EL+L + I L + + + + L GFP L L
Sbjct: 8 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLK 67
Query: 67 RLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L +++NRI G + Q+ P L L L N + +L L+PL
Sbjct: 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 109
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
G++ + G LP L L L +N+I+ + VL KL L+L N+I+
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIR 167
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 58 GFPELPALTRLELSD----NRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
F +P+L RL+L + IS G + L YLNL IKD+ L PL G
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEG--AFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 59 FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
F LP L +LEL N+++G N + + + L L N+IK++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 35/120 (29%)
Query: 13 ERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINV------GLTSLKGFPELPALT 66
E++G +Q +L+ ++ +++ +L + NL L +N+ GL S + F E P L
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSL--QLKNLSHLQTLNLSHNEPLGLQS-QAFKECPQLE 400
Query: 67 RLELSDNRI--------------------------SGGLNVLQSSPKLAYLNLCGNRIKD 100
L+L+ R+ + ++L P L +LNL GN +D
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD 460
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 36/120 (30%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE 61
+S + F PD + G + EL L C ++ F NLK
Sbjct: 82 SSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLK----------------- 123
Query: 62 LPALTRLELSDNRIS--------GGLNVLQSSPKLAYLNLCGNRIKDL--ETLEPLFGST 111
ALTRL+LS N+I G LN L+S ++ N+I + LEPL G T
Sbjct: 124 --ALTRLDLSKNQIRSLYLHPSFGKLNSLKS------IDFSSNQIFLVCEHELEPLQGKT 175
>pdb|3P0W|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|C Chain C, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|D Chain D, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
Length = 470
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 45 ILSAINVGLTSLKG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK-DLE 102
+++A+ L L G F E+P L R S+P LAYL G+R K DL
Sbjct: 128 VITAVEAALLDLLGQFLEVPVAELLGAGQQR--------DSAPMLAYLFYVGDRRKTDLP 179
Query: 103 TLEPLFGS 110
LE G+
Sbjct: 180 YLEGANGA 187
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 45 ILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
+LS ++ F L + ++LS NR++ S K YLNL N I
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 114
Query: 100 DL 101
L
Sbjct: 115 SL 116
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
+T L L+ LT L+ LP L L+LS N++ + Q+ P L L++ NR+
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 100 DL 101
L
Sbjct: 114 SL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,980,453
Number of Sequences: 62578
Number of extensions: 96334
Number of successful extensions: 445
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 115
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)