Query psy8464
Match_columns 111
No_of_seqs 118 out of 2439
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 19:33:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.4 9E-14 2E-18 82.0 3.0 94 15-108 16-110 (175)
2 KOG0617|consensus 99.3 1.4E-13 3.1E-18 80.7 -2.1 98 2-101 65-165 (264)
3 KOG0617|consensus 99.2 1.1E-12 2.3E-17 77.1 -0.9 83 18-100 33-116 (264)
4 PF13855 LRR_8: Leucine rich r 99.1 1.3E-10 2.9E-15 57.4 3.2 55 19-73 2-59 (61)
5 PF13855 LRR_8: Leucine rich r 99.1 1.4E-10 3.1E-15 57.3 2.9 58 41-98 1-61 (61)
6 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 68.5 3.2 83 18-101 42-128 (175)
7 KOG0444|consensus 99.0 2.9E-11 6.4E-16 83.0 -0.2 91 7-99 94-186 (1255)
8 PLN00113 leucine-rich repeat r 99.0 1.1E-09 2.4E-14 79.1 7.5 81 18-98 164-248 (968)
9 KOG4194|consensus 99.0 6.5E-11 1.4E-15 80.4 -1.0 83 19-101 342-431 (873)
10 PLN00113 leucine-rich repeat r 99.0 2.5E-09 5.3E-14 77.3 6.8 82 18-99 499-584 (968)
11 KOG0444|consensus 98.9 1.9E-11 4.1E-16 83.9 -3.9 71 3-75 232-303 (1255)
12 KOG4194|consensus 98.9 1.1E-09 2.4E-14 74.6 4.4 98 2-101 111-212 (873)
13 PLN03150 hypothetical protein; 98.9 5E-09 1.1E-13 72.8 7.4 80 20-99 420-503 (623)
14 KOG0472|consensus 98.9 5E-11 1.1E-15 77.8 -2.9 38 18-55 183-220 (565)
15 KOG0472|consensus 98.9 5.2E-10 1.1E-14 73.2 1.3 95 3-99 421-541 (565)
16 KOG1259|consensus 98.8 4.4E-10 9.4E-15 71.4 -0.5 86 18-104 284-370 (490)
17 PLN03150 hypothetical protein; 98.8 2.2E-08 4.8E-13 69.7 7.6 89 7-97 433-526 (623)
18 PF12799 LRR_4: Leucine Rich r 98.8 1E-08 2.2E-13 47.3 3.6 42 64-105 2-43 (44)
19 PF12799 LRR_4: Leucine Rich r 98.7 3E-08 6.5E-13 45.7 3.5 39 19-57 2-40 (44)
20 PRK15370 E3 ubiquitin-protein 98.7 1.3E-07 2.9E-12 66.9 8.2 55 43-101 243-298 (754)
21 KOG1644|consensus 98.6 5.6E-08 1.2E-12 58.4 4.4 91 19-109 20-111 (233)
22 KOG0531|consensus 98.6 1.1E-08 2.5E-13 68.0 1.5 85 18-103 95-179 (414)
23 KOG0618|consensus 98.6 9.9E-10 2.1E-14 77.6 -3.6 81 20-100 361-466 (1081)
24 PRK15387 E3 ubiquitin-protein 98.6 8.6E-08 1.9E-12 68.0 5.3 77 19-100 383-459 (788)
25 PRK15370 E3 ubiquitin-protein 98.6 3.5E-07 7.6E-12 64.9 7.9 90 3-102 188-278 (754)
26 KOG1259|consensus 98.6 5.3E-09 1.1E-13 66.6 -1.0 84 19-102 330-415 (490)
27 KOG4237|consensus 98.6 1.8E-09 3.8E-14 70.4 -3.5 91 2-96 55-150 (498)
28 COG4886 Leucine-rich repeat (L 98.6 2.6E-08 5.7E-13 65.7 1.9 92 3-96 126-219 (394)
29 KOG0618|consensus 98.6 6.4E-09 1.4E-13 73.7 -1.2 81 18-98 407-488 (1081)
30 KOG4237|consensus 98.5 2.6E-08 5.6E-13 65.2 1.3 82 18-99 274-359 (498)
31 PRK15387 E3 ubiquitin-protein 98.5 4.9E-07 1.1E-11 64.3 7.3 48 3-57 211-258 (788)
32 KOG0532|consensus 98.5 1.9E-08 4.1E-13 68.4 -0.3 96 2-100 152-248 (722)
33 KOG0532|consensus 98.5 7.6E-09 1.7E-13 70.2 -2.2 94 4-101 132-226 (722)
34 KOG1859|consensus 98.5 5.1E-09 1.1E-13 73.0 -3.6 89 19-109 165-255 (1096)
35 PLN03210 Resistant to P. syrin 98.4 4.9E-06 1.1E-10 61.8 9.4 79 18-96 611-691 (1153)
36 COG4886 Leucine-rich repeat (L 98.3 4.5E-07 9.7E-12 59.9 3.2 90 18-107 163-276 (394)
37 KOG0531|consensus 98.3 1.9E-07 4.1E-12 62.2 1.2 92 18-110 72-164 (414)
38 KOG1859|consensus 98.3 1.6E-08 3.5E-13 70.6 -5.0 89 18-108 187-276 (1096)
39 KOG4579|consensus 98.2 6.9E-08 1.5E-12 55.0 -1.8 59 41-99 53-113 (177)
40 PLN03210 Resistant to P. syrin 98.2 9.7E-06 2.1E-10 60.3 8.1 88 8-97 580-668 (1153)
41 KOG2739|consensus 98.1 1.1E-06 2.4E-11 54.5 1.7 91 19-109 19-114 (260)
42 cd00116 LRR_RI Leucine-rich re 98.1 4.2E-06 9E-11 53.6 3.9 82 18-99 137-234 (319)
43 KOG4579|consensus 98.1 4.9E-07 1.1E-11 51.6 -0.9 84 18-101 53-138 (177)
44 KOG4658|consensus 97.9 7.1E-06 1.5E-10 59.4 1.8 79 18-96 571-652 (889)
45 KOG1644|consensus 97.9 3.4E-05 7.3E-10 46.8 4.3 79 20-99 44-126 (233)
46 cd00116 LRR_RI Leucine-rich re 97.8 1.8E-05 3.8E-10 50.7 2.6 59 41-99 137-206 (319)
47 KOG3207|consensus 97.7 2.2E-05 4.7E-10 52.4 1.6 90 18-107 197-322 (505)
48 KOG3207|consensus 97.7 2.9E-05 6.3E-10 51.8 2.0 84 18-101 172-286 (505)
49 KOG4658|consensus 97.6 3.1E-05 6.6E-10 56.3 2.1 80 18-97 545-629 (889)
50 KOG2982|consensus 97.4 0.00012 2.5E-09 47.2 2.2 82 18-99 71-159 (418)
51 KOG2123|consensus 97.3 6.5E-06 1.4E-10 52.2 -3.8 80 18-98 19-100 (388)
52 KOG3665|consensus 97.3 0.00033 7.2E-09 49.9 4.0 81 18-99 173-263 (699)
53 KOG3665|consensus 97.3 0.00017 3.6E-09 51.3 2.2 82 18-99 148-233 (699)
54 KOG2123|consensus 97.3 2.5E-06 5.5E-11 54.0 -6.1 71 39-110 17-87 (388)
55 KOG2739|consensus 97.1 0.0003 6.4E-09 44.1 1.7 58 18-75 65-128 (260)
56 KOG1909|consensus 97.0 0.00097 2.1E-08 43.6 3.4 83 18-100 157-255 (382)
57 PF00560 LRR_1: Leucine Rich R 96.8 0.00036 7.8E-09 27.1 0.4 18 20-37 2-19 (22)
58 PF13504 LRR_7: Leucine rich r 96.4 0.0029 6.4E-08 22.8 1.4 15 19-33 2-16 (17)
59 KOG1909|consensus 96.1 0.0056 1.2E-07 40.2 2.5 59 18-76 185-254 (382)
60 PRK15386 type III secretion pr 95.7 0.066 1.4E-06 36.3 6.4 32 18-51 72-104 (426)
61 KOG2982|consensus 95.5 0.0095 2E-07 38.8 1.9 59 18-76 97-159 (418)
62 COG5238 RNA1 Ran GTPase-activa 95.5 0.025 5.3E-07 36.5 3.6 84 18-101 30-135 (388)
63 PF13306 LRR_5: Leucine rich r 95.0 0.082 1.8E-06 29.3 4.5 51 19-71 13-66 (129)
64 PRK15386 type III secretion pr 94.9 0.14 3E-06 34.9 6.0 51 18-73 52-104 (426)
65 smart00365 LRR_SD22 Leucine-ri 94.1 0.068 1.5E-06 21.5 2.1 20 86-105 2-21 (26)
66 smart00370 LRR Leucine-rich re 94.0 0.071 1.5E-06 21.1 2.0 17 63-79 2-18 (26)
67 smart00369 LRR_TYP Leucine-ric 94.0 0.071 1.5E-06 21.1 2.0 17 63-79 2-18 (26)
68 PF13306 LRR_5: Leucine rich r 93.6 0.31 6.7E-06 26.9 4.9 84 7-95 25-112 (129)
69 smart00364 LRR_BAC Leucine-ric 93.2 0.064 1.4E-06 21.6 1.2 18 18-35 2-19 (26)
70 KOG0473|consensus 90.5 0.0031 6.7E-08 39.6 -6.0 40 18-57 42-81 (326)
71 PF13516 LRR_6: Leucine Rich r 88.7 0.15 3.3E-06 19.7 0.2 14 86-99 2-15 (24)
72 KOG3763|consensus 86.8 0.58 1.3E-05 33.0 2.2 60 18-77 218-284 (585)
73 smart00368 LRR_RI Leucine rich 85.3 0.86 1.9E-05 18.4 1.6 15 18-32 2-16 (28)
74 KOG3763|consensus 84.8 0.45 9.9E-06 33.5 0.9 61 38-99 215-283 (585)
75 KOG2120|consensus 84.5 0.058 1.2E-06 35.3 -3.2 38 18-55 185-224 (419)
76 COG5238 RNA1 Ran GTPase-activa 83.9 0.71 1.5E-05 30.1 1.5 82 18-99 157-255 (388)
77 KOG0473|consensus 79.0 0.11 2.3E-06 32.9 -3.3 60 18-77 65-125 (326)
78 KOG2120|consensus 73.2 0.68 1.5E-05 30.6 -0.9 14 84-97 311-324 (419)
79 smart00367 LRR_CC Leucine-rich 66.0 5.4 0.00012 15.5 1.3 15 85-99 1-16 (26)
80 TIGR00864 PCC polycystin catio 59.0 8 0.00017 32.9 2.1 31 24-54 1-32 (2740)
81 TIGR00864 PCC polycystin catio 57.6 7 0.00015 33.2 1.6 31 47-77 1-33 (2740)
82 KOG1947|consensus 52.6 11 0.00025 25.5 1.9 80 18-97 214-306 (482)
83 PF01462 LRRNT: Leucine rich r 34.7 24 0.00051 14.1 0.8 11 2-12 17-27 (28)
84 KOG3864|consensus 23.7 32 0.0007 21.6 0.4 54 18-71 125-184 (221)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.43 E-value=9e-14 Score=82.05 Aligned_cols=94 Identities=38% Similarity=0.578 Sum_probs=33.2
Q ss_pred cCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEc
Q psy8464 15 MGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNL 93 (111)
Q Consensus 15 ~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l 93 (111)
.++..+++|++++|.|+.+...-..+.+++.+++++|.++.+.++..+.+|+.|++++|.++.+.+.+. .++.|+.|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 333567888999999988765534677888999999999888888888889999999999887444443 5788999999
Q ss_pred CCCCCCCCcCCCCCC
Q psy8464 94 CGNRIKDLETLEPLF 108 (111)
Q Consensus 94 ~~n~l~~~~~~~~l~ 108 (111)
++|.+.++..+..++
T Consensus 96 ~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 96 SNNKISDLNELEPLS 110 (175)
T ss_dssp TTS---SCCCCGGGG
T ss_pred cCCcCCChHHhHHHH
Confidence 999888776555443
No 2
>KOG0617|consensus
Probab=99.28 E-value=1.4e-13 Score=80.72 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=64.5
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC--CC-CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LK-GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~--l~-~~~~l~~L~~l~l~~n~~~~~ 78 (111)
|+.++++|..+..+ +.++.+++.-|++..+|..|+.++.|+++|+..|.+.. +| .|..+..|+.|++++|.+..+
T Consensus 65 nnqie~lp~~issl--~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l 142 (264)
T KOG0617|consen 65 NNQIEELPTSISSL--PKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL 142 (264)
T ss_pred cchhhhcChhhhhc--hhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence 45556666666666 66666666666666666666667777777776666654 44 455555566666666666666
Q ss_pred ccccCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
++.++.+.+|+.+.+..|.+-++
T Consensus 143 p~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred ChhhhhhcceeEEeeccCchhhC
Confidence 66677778888888877766444
No 3
>KOG0617|consensus
Probab=99.21 E-value=1.1e-12 Score=77.10 Aligned_cols=83 Identities=27% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
+.++.+.++.|+++.+|..+..+.+|+++++.+|.+..+| +++.+++|+.|+++.|++..++..||.++.|+.+++++|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 7788888888888888888888888888888888888888 788888888888888888776666888888888888888
Q ss_pred CCCC
Q psy8464 97 RIKD 100 (111)
Q Consensus 97 ~l~~ 100 (111)
++..
T Consensus 113 nl~e 116 (264)
T KOG0617|consen 113 NLNE 116 (264)
T ss_pred cccc
Confidence 8764
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.3e-10 Score=57.41 Aligned_cols=55 Identities=38% Similarity=0.552 Sum_probs=25.8
Q ss_pred CccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCC
Q psy8464 19 QIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDN 73 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n 73 (111)
+++++++++|+++.++. .|..+++|+.+++++|.++.++ .|.++++|+++++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555555332 3344444444444444444433 3444444444444444
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.4e-10 Score=57.31 Aligned_cols=58 Identities=34% Similarity=0.537 Sum_probs=51.6
Q ss_pred CCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCC
Q psy8464 41 TNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRI 98 (111)
Q Consensus 41 ~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l 98 (111)
++++.+++++|.++.++ .|..+++|+++++++|.+..+.+. +..+++|+++++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999988 688999999999999999986554 78999999999999975
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.5e-10 Score=68.48 Aligned_cols=83 Identities=34% Similarity=0.443 Sum_probs=42.1
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CC-CCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GF-PELPALTRLELSDNRISGGL--NVLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~-~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l 93 (111)
..++.|++++|.|+.+++ +..+..|+.+++++|.++.++ .+ ..+++|+.|++++|++.++- ..++.++.|+.|++
T Consensus 42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 678999999999999875 467899999999999999986 34 35789999999999998743 33668999999999
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
.+|.++..
T Consensus 121 ~~NPv~~~ 128 (175)
T PF14580_consen 121 EGNPVCEK 128 (175)
T ss_dssp TT-GGGGS
T ss_pred cCCcccch
Confidence 99999754
No 7
>KOG0444|consensus
Probab=99.04 E-value=2.9e-11 Score=82.99 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=81.4
Q ss_pred CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCC
Q psy8464 7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQS 84 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~ 84 (111)
-+|++++.+ ..++.||++.|++..+|.....-.+.-++++++|.+.++| -|-.+..|-+|+++.|++..++|.+..
T Consensus 94 GiP~diF~l--~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRL--KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhccc--ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 389999998 8999999999999999998888888999999999999999 356778888999999999998888888
Q ss_pred CCCCcEEEcCCCCCC
Q psy8464 85 SPKLAYLNLCGNRIK 99 (111)
Q Consensus 85 ~~~L~~l~l~~n~l~ 99 (111)
+..|++|.+++|.+.
T Consensus 172 L~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLN 186 (1255)
T ss_pred HhhhhhhhcCCChhh
Confidence 899999999999875
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.03 E-value=1.1e-09 Score=79.05 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=37.6
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l 93 (111)
++++.|++++|.+.. +|..+..+.+|+.+++++|.+.. +| .+..+.+|++|++++|.+.... ..++.+++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 445555555555443 44444445555555555554432 22 3344444555555554444222 22444445555555
Q ss_pred CCCCC
Q psy8464 94 CGNRI 98 (111)
Q Consensus 94 ~~n~l 98 (111)
++|.+
T Consensus 244 ~~n~l 248 (968)
T PLN00113 244 VYNNL 248 (968)
T ss_pred cCcee
Confidence 55444
No 9
>KOG4194|consensus
Probab=98.96 E-value=6.5e-11 Score=80.39 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=39.4
Q ss_pred CccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC-----CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEE
Q psy8464 19 QIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK-----GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYL 91 (111)
Q Consensus 19 ~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~-----~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l 91 (111)
.+++|.++.|+++. ....|..+.+|+.|++..|.+++.- .|.++++|+.|.+.+|++..++.. |.++..|++|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 33444444444444 2223344444555555555544421 244555555555555555553322 4455555555
Q ss_pred EcCCCCCCCC
Q psy8464 92 NLCGNRIKDL 101 (111)
Q Consensus 92 ~l~~n~l~~~ 101 (111)
++.+|.+.++
T Consensus 422 dL~~NaiaSI 431 (873)
T KOG4194|consen 422 DLGDNAIASI 431 (873)
T ss_pred cCCCCcceee
Confidence 5555555443
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=2.5e-09 Score=77.32 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=48.0
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.+.. +|..+..+.+|+.+++++|.++. +| .+..+++|+.|++++|.+....+ .+..+..|+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 455566666666655 55555556666666666666654 33 45556666666666666654333 3555666666666
Q ss_pred CCCCCC
Q psy8464 94 CGNRIK 99 (111)
Q Consensus 94 ~~n~l~ 99 (111)
++|.+.
T Consensus 579 s~N~l~ 584 (968)
T PLN00113 579 SHNHLH 584 (968)
T ss_pred cCCcce
Confidence 666654
No 11
>KOG0444|consensus
Probab=98.95 E-value=1.9e-11 Score=83.90 Aligned_cols=71 Identities=27% Similarity=0.388 Sum_probs=37.7
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcC
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRI 75 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~ 75 (111)
++|+.+|+++.++ .+++.|++++|.|+.+....+.+.+++.++++.|.++.+| .++++++|+.|+..+|++
T Consensus 232 N~Lp~vPecly~l--~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 232 NNLPIVPECLYKL--RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred cCCCcchHHHhhh--hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 3455555555555 5555555555555554444444455555555555555555 445555555555555543
No 12
>KOG4194|consensus
Probab=98.94 E-value=1.1e-09 Score=74.59 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.|+++|.-.... ..++.|++..|.|+.+.. ....++.++++|++.|.++.++ .|+.-..+++|++++|.++.+
T Consensus 111 ~N~Lt~IP~f~~~s--ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 111 KNELTRIPRFGHES--GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred cchhhhcccccccc--cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc
Confidence 34567777644333 668888888888888433 4477788888888888888776 566666778888888887763
Q ss_pred cc-ccCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LN-VLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~-~~~~~~~L~~l~l~~n~l~~~ 101 (111)
-. .|..+.+|.++.++.|.++.+
T Consensus 189 ~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred ccccccccchheeeecccCccccc
Confidence 22 255666777777777777655
No 13
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=5e-09 Score=72.84 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=54.2
Q ss_pred ccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCC-CCC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEcCC
Q psy8464 20 IKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLT-SLK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNLCG 95 (111)
Q Consensus 20 l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~ 95 (111)
++.|++++|.+.. +|..+..+.+|+.|++++|.+. .+| .+..+.+|+.|++++|.+...++ .++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566777777766 6666677777777777777775 355 56666777777777777764333 366777777777777
Q ss_pred CCCC
Q psy8464 96 NRIK 99 (111)
Q Consensus 96 n~l~ 99 (111)
|.++
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 7665
No 14
>KOG0472|consensus
Probab=98.91 E-value=5e-11 Score=77.81 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=14.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS 55 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~ 55 (111)
..++.+|.-.|-+..+|...+.+..|..+++..|.+..
T Consensus 183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred HHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc
Confidence 33333333333333333333333333333333333333
No 15
>KOG0472|consensus
Probab=98.89 E-value=5.2e-10 Score=73.20 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=77.0
Q ss_pred CCCCCCCC-cccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC------------------------
Q psy8464 3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK------------------------ 57 (111)
Q Consensus 3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~------------------------ 57 (111)
+|...+++ .+..+ +.++.+++++|-+.++|..++.+..|+.++++.|++..+|
T Consensus 421 nn~isfv~~~l~~l--~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQL--QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhh--hcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 33444444 34445 7888899999999998888888888999999888875432
Q ss_pred -CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464 58 -GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 58 -~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 99 (111)
++..+.+|..|++..|.+..+++.++.+.+++++.+.+|.++
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 245678999999999999998888999999999999999997
No 16
>KOG1259|consensus
Probab=98.83 E-value=4.4e-10 Score=71.39 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=66.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~~n 96 (111)
..++++|+++|.|+.+..+..-.+.++.++++.|++..+..+..+.+|+.|++++|.+..+ ..+. .+-+..+|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhh
Confidence 6788999999999998888777889999999999998887778888999999999988762 2222 4445566666666
Q ss_pred CCCCCcCC
Q psy8464 97 RIKDLETL 104 (111)
Q Consensus 97 ~l~~~~~~ 104 (111)
.+.+++++
T Consensus 363 ~iE~LSGL 370 (490)
T KOG1259|consen 363 KIETLSGL 370 (490)
T ss_pred hHhhhhhh
Confidence 66555443
No 17
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=69.71 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=73.1
Q ss_pred CCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcccc-c
Q psy8464 7 FFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLNV-L 82 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~~-~ 82 (111)
.+|+++..+ +.++.|++++|.+.. +|..++.+..|+.|++++|.++. +| .+..+.+|+.|++++|.+....|. +
T Consensus 433 ~ip~~i~~L--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 433 FIPNDISKL--RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred cCCHHHhCC--CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 466666666 899999999999997 99889999999999999999985 66 688899999999999998854443 5
Q ss_pred CC-CCCCcEEEcCCCC
Q psy8464 83 QS-SPKLAYLNLCGNR 97 (111)
Q Consensus 83 ~~-~~~L~~l~l~~n~ 97 (111)
+. ...+..+++.+|.
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 43 3456678888775
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.80 E-value=1e-08 Score=47.33 Aligned_cols=42 Identities=38% Similarity=0.519 Sum_probs=31.4
Q ss_pred CCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCC
Q psy8464 64 ALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLE 105 (111)
Q Consensus 64 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 105 (111)
+|++|++++|+++++++.++.+++|+.+++++|.+++++.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCCC
Confidence 678888888888875555888888888888888888776543
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.70 E-value=3e-08 Score=45.73 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=25.5
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK 57 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~ 57 (111)
++++|++++|+|+.+|..+..+++|+.+++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 567777777777777766667777777777777666543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.70 E-value=1.3e-07 Score=66.95 Aligned_cols=55 Identities=31% Similarity=0.407 Sum_probs=26.7
Q ss_pred ccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464 43 LKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 43 l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
|+.+++++|.+..+| .+. ..|+.|+++.|++..+++.+. ..|+.|++++|.++.+
T Consensus 243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 243 IQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred ccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccC
Confidence 444444444444433 111 245566666666554333222 3566666666666544
No 21
>KOG1644|consensus
Probab=98.65 E-value=5.6e-08 Score=58.45 Aligned_cols=91 Identities=30% Similarity=0.423 Sum_probs=58.9
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcCCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLCGNR 97 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 97 (111)
.-+.+++++.++..+...-........+|+.+|.+-.++.|+.+.+|.+|.+..|.++.+-+.+. -++.+..|.+.+|.
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 34556777777766544333445566777777777766667777777777777777776555554 45567777777777
Q ss_pred CCCCcCCCCCCC
Q psy8464 98 IKDLETLEPLFG 109 (111)
Q Consensus 98 l~~~~~~~~l~~ 109 (111)
+..+.++..+..
T Consensus 100 i~~l~dl~pLa~ 111 (233)
T KOG1644|consen 100 IQELGDLDPLAS 111 (233)
T ss_pred hhhhhhcchhcc
Confidence 766655554443
No 22
>KOG0531|consensus
Probab=98.64 E-value=1.1e-08 Score=67.99 Aligned_cols=85 Identities=34% Similarity=0.447 Sum_probs=70.1
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
..++.+++.+|.|..+......+.+|+.+++++|.+..+.++..+..|+.|++.+|.+.. .+.+..+..|+.+++++|.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcch
Confidence 778888999999988777557788899999999999888877777788899999999887 5566667888888888888
Q ss_pred CCCCcC
Q psy8464 98 IKDLET 103 (111)
Q Consensus 98 l~~~~~ 103 (111)
+..+..
T Consensus 174 i~~ie~ 179 (414)
T KOG0531|consen 174 IVDIEN 179 (414)
T ss_pred hhhhhh
Confidence 877655
No 23
>KOG0618|consensus
Probab=98.63 E-value=9.9e-10 Score=77.62 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=42.6
Q ss_pred ccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc------------------
Q psy8464 20 IKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG------------------ 78 (111)
Q Consensus 20 l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~------------------ 78 (111)
++.|.+.+|.+++ .-..+..+.+|++|++++|+++.+| .+.++..|++|++++|+++.+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence 4444455555554 2222244555555555555555555 344444555555555554442
Q ss_pred ----ccccCCCCCCcEEEcCCCCCCC
Q psy8464 79 ----LNVLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 79 ----~~~~~~~~~L~~l~l~~n~l~~ 100 (111)
.|++..++.|+.++++.|.++.
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ceeechhhhhcCcceEEecccchhhh
Confidence 2355566777777777777764
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=8.6e-08 Score=67.98 Aligned_cols=77 Identities=27% Similarity=0.263 Sum_probs=48.3
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 98 (111)
.++.|++++|.++.+|.. ...++.+++++|.++.+|.+ ...|+.|++++|++..++..+..++.+..+++++|.+
T Consensus 383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 345555555555554432 23455666666666655532 2356667777777776555577788888889988888
Q ss_pred CC
Q psy8464 99 KD 100 (111)
Q Consensus 99 ~~ 100 (111)
++
T Consensus 458 s~ 459 (788)
T PRK15387 458 SE 459 (788)
T ss_pred Cc
Confidence 74
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=3.5e-07 Score=64.91 Aligned_cols=90 Identities=31% Similarity=0.297 Sum_probs=71.2
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNV 81 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~ 81 (111)
..+..+|..++ +.++.|++++|.++.+|..+. .+|+.|++++|.++.+| .+. ..|+.|++++|.+..++..
T Consensus 188 ~~LtsLP~~Ip----~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~ 259 (754)
T PRK15370 188 LGLTTIPACIP----EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPER 259 (754)
T ss_pred CCcCcCCcccc----cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChh
Confidence 35667776542 679999999999999887653 58999999999999888 343 4789999999999875544
Q ss_pred cCCCCCCcEEEcCCCCCCCCc
Q psy8464 82 LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~~~~ 102 (111)
+. ..|+.|++++|.++.++
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP 278 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLP 278 (754)
T ss_pred Hh--CCCCEEECcCCccCccc
Confidence 43 47999999999998764
No 26
>KOG1259|consensus
Probab=98.59 E-value=5.3e-09 Score=66.60 Aligned_cols=84 Identities=26% Similarity=0.320 Sum_probs=51.3
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEcCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n 96 (111)
+++.||+++|.++.+.++-.++.+++.+.+++|.+.++.++.++=+|..|++++|++..+- ..+|.+|.|+++.+.+|
T Consensus 330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 4444444554444444444444455555555555554445555567778888888887632 23778888888888888
Q ss_pred CCCCCc
Q psy8464 97 RIKDLE 102 (111)
Q Consensus 97 ~l~~~~ 102 (111)
.++.+.
T Consensus 410 Pl~~~v 415 (490)
T KOG1259|consen 410 PLAGSV 415 (490)
T ss_pred Cccccc
Confidence 887653
No 27
>KOG4237|consensus
Probab=98.57 E-value=1.8e-09 Score=70.44 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcC-CCcCCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELS-DNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~-~n~~~~ 77 (111)
...|+++|.+++ ++.+.+.+.-|+|+.+|+ .|..+..|+.+++++|.++.+. .|.++..+..|.+- +|+|++
T Consensus 55 ~~GL~eVP~~LP----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVPANLP----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCcccCC----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 457788887644 567888999999999665 4588889999999999998876 68888777655554 488877
Q ss_pred cccc-cCCCCCCcEEEcCCC
Q psy8464 78 GLNV-LQSSPKLAYLNLCGN 96 (111)
Q Consensus 78 ~~~~-~~~~~~L~~l~l~~n 96 (111)
++.. |+.+..++.|.+.-|
T Consensus 131 l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh
Confidence 5433 444444444444333
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=2.6e-08 Score=65.68 Aligned_cols=92 Identities=26% Similarity=0.311 Sum_probs=48.9
Q ss_pred CCCCCCCCcccccCcC-CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCC-CCCCCCEEEcCCCcCCCccc
Q psy8464 3 SNLPFFEPDTERMGKI-QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFP-ELPALTRLELSDNRISGGLN 80 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~-~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~l~~L~~l~l~~n~~~~~~~ 80 (111)
+++.++|+..... . +++.+++++|.+..++...+.++.|+.++++.|.+..++... ....++.+++++|++..+++
T Consensus 126 n~i~~i~~~~~~~--~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 126 NNITDIPPLIGLL--KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred cccccCccccccc--hhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence 3444455443333 2 566666666666665544555666666666666666555322 45555666666666655333
Q ss_pred ccCCCCCCcEEEcCCC
Q psy8464 81 VLQSSPKLAYLNLCGN 96 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~n 96 (111)
.......|..+.+++|
T Consensus 204 ~~~~~~~L~~l~~~~N 219 (394)
T COG4886 204 EIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhcCC
Confidence 3333334555555555
No 29
>KOG0618|consensus
Probab=98.56 E-value=6.4e-09 Score=73.70 Aligned_cols=81 Identities=32% Similarity=0.424 Sum_probs=55.4
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n 96 (111)
+.++.|+++||+++.+|+....+..|+++..-+|.+..+|.+..++.|+.+|++.|.++... +.....+.|++|++++|
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 45555555555555555555555555555555555555666677889999999999987632 33334589999999999
Q ss_pred CC
Q psy8464 97 RI 98 (111)
Q Consensus 97 ~l 98 (111)
.-
T Consensus 487 ~~ 488 (1081)
T KOG0618|consen 487 TR 488 (1081)
T ss_pred cc
Confidence 74
No 30
>KOG4237|consensus
Probab=98.55 E-value=2.6e-08 Score=65.18 Aligned_cols=82 Identities=27% Similarity=0.249 Sum_probs=69.5
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
++++.|++++|+|+. -++.|.+..+++.+.+..|.+..+. .|.++..|+.|++.+|+++.+.+. |....+|.++++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 789999999999999 5666788999999999999998876 688889999999999999875554 667888999999
Q ss_pred CCCCCC
Q psy8464 94 CGNRIK 99 (111)
Q Consensus 94 ~~n~l~ 99 (111)
-.|.+.
T Consensus 354 ~~Np~~ 359 (498)
T KOG4237|consen 354 LSNPFN 359 (498)
T ss_pred ccCccc
Confidence 888774
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.53 E-value=4.9e-07 Score=64.26 Aligned_cols=48 Identities=27% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK 57 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~ 57 (111)
++|..+|+.+. ..++.|++.+|.++.+|.. .++|+.|++++|.++.+|
T Consensus 211 ~~LtsLP~~l~----~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 211 SGLTTLPDCLP----AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLP 258 (788)
T ss_pred CCCCcCCcchh----cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCccc
Confidence 45666666543 3456666666666665532 345666666666655544
No 32
>KOG0532|consensus
Probab=98.50 E-value=1.9e-08 Score=68.37 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=65.9
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLN 80 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~ 80 (111)
|++++.+|+++... ..+..+|.+.|.+..+|...+.+.+++.+.+..|.+..+| .+.. -.|..||++.|++..++-
T Consensus 152 NNkl~~lp~~ig~~--~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLL--PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPV 228 (722)
T ss_pred cCccccCCcccccc--hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecch
Confidence 56677777777633 6667777777777777777777777777777777766666 4442 235667777777777554
Q ss_pred ccCCCCCCcEEEcCCCCCCC
Q psy8464 81 VLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~n~l~~ 100 (111)
.|..+..|++|-+.+|.+++
T Consensus 229 ~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhheeeeeccCCCCC
Confidence 57777777777777777764
No 33
>KOG0532|consensus
Probab=98.49 E-value=7.6e-09 Score=70.22 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
.+..+|+.++.++ ++.+.+++|+++.+|..++....+..++.+.|.+.++| .+..+.+|+.+.+..|.+..+++++
T Consensus 132 qlS~lp~~lC~lp---Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP---LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred hhhcCChhhhcCc---ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence 3444555554443 66666677777766666666666666777777777766 5666777777777777777766666
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~ 101 (111)
..++ |..|++++|++..+
T Consensus 209 ~~Lp-Li~lDfScNkis~i 226 (722)
T KOG0532|consen 209 CSLP-LIRLDFSCNKISYL 226 (722)
T ss_pred hCCc-eeeeecccCceeec
Confidence 6544 77899999998876
No 34
>KOG1859|consensus
Probab=98.46 E-value=5.1e-09 Score=72.98 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC--CCCCCcEEEcCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ--SSPKLAYLNLCGN 96 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~--~~~~L~~l~l~~n 96 (111)
.+...++++|.+..+.....-++.++.|++++|+++.+..+..+++|++||+++|.+.. .+.++ .|+ |..|++++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcc-ccccchhhhh-heeeeeccc
Confidence 45556666676666666666666677777777776665555666667777777776665 33333 333 666666666
Q ss_pred CCCCCcCCCCCCC
Q psy8464 97 RIKDLETLEPLFG 109 (111)
Q Consensus 97 ~l~~~~~~~~l~~ 109 (111)
-++.+.++..+++
T Consensus 243 ~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 243 ALTTLRGIENLKS 255 (1096)
T ss_pred HHHhhhhHHhhhh
Confidence 6665555444443
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.37 E-value=4.9e-06 Score=61.82 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEeccccc-CCCCCCCCCCCCCCEEEcCCCc-CCCcccccCCCCCCcEEEcCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVG-LTSLKGFPELPALTRLELSDNR-ISGGLNVLQSSPKLAYLNLCG 95 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~-~~~l~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~ 95 (111)
.+++.|++.++.+..++..+..+.+|+.++++++. +..+|.+..+++|+.|+++++. +..++..++.+++|+.|++++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 56777777777777766666677777777777653 4556666666777777777654 333344466667777777766
Q ss_pred C
Q psy8464 96 N 96 (111)
Q Consensus 96 n 96 (111)
|
T Consensus 691 c 691 (1153)
T PLN03210 691 C 691 (1153)
T ss_pred C
Confidence 4
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=4.5e-07 Score=59.91 Aligned_cols=90 Identities=26% Similarity=0.384 Sum_probs=43.9
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC------------------------CCCCCCCCCEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK------------------------GFPELPALTRLELSDN 73 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~------------------------~~~~l~~L~~l~l~~n 73 (111)
+.++.|+++.|.+..++...+....++.+++++|.+..+| .+..+..+..+.+..|
T Consensus 163 ~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred ccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence 4455555555555554444334444444555555444443 2233333334444444
Q ss_pred cCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCC
Q psy8464 74 RISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107 (111)
Q Consensus 74 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l 107 (111)
++...+..++.++.++++++++|.++.+..+..+
T Consensus 243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~ 276 (394)
T COG4886 243 KLEDLPESIGNLSNLETLDLSNNQISSISSLGSL 276 (394)
T ss_pred eeeeccchhccccccceecccccccccccccccc
Confidence 4433222344555677777777777666544333
No 37
>KOG0531|consensus
Probab=98.32 E-value=1.9e-07 Score=62.23 Aligned_cols=92 Identities=32% Similarity=0.376 Sum_probs=75.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCC-CCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
..+..+.++.|.+.........+..++.+++.+|.+..+.. +..+.+|++|++++|.+.. ...+..++.|+.|++.+|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccchhhccchhhheeccC
Confidence 34455667777777755556788999999999999999886 8889999999999999988 555677777999999999
Q ss_pred CCCCCcCCCCCCCC
Q psy8464 97 RIKDLETLEPLFGS 110 (111)
Q Consensus 97 ~l~~~~~~~~l~~l 110 (111)
.++.+..+..+..+
T Consensus 151 ~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 151 LISDISGLESLKSL 164 (414)
T ss_pred cchhccCCccchhh
Confidence 99998877665544
No 38
>KOG1859|consensus
Probab=98.26 E-value=1.6e-08 Score=70.62 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCC-CCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-LPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
+.++.|+++.|+++++. .+..+++|+.||++.|.+..+|.+.. -.+|+.|.+.+|.++. .-.+..+.+|..|++++|
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHh
Confidence 67888999999999977 55889999999999999999984332 1349999999999887 445678889999999999
Q ss_pred CCCCCcCCCCCC
Q psy8464 97 RIKDLETLEPLF 108 (111)
Q Consensus 97 ~l~~~~~~~~l~ 108 (111)
.+.+.+.+..+.
T Consensus 265 ll~~hseL~pLw 276 (1096)
T KOG1859|consen 265 LLSEHSELEPLW 276 (1096)
T ss_pred hhhcchhhhHHH
Confidence 998776665543
No 39
>KOG4579|consensus
Probab=98.25 E-value=6.9e-08 Score=55.03 Aligned_cols=59 Identities=31% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCccEEecccccCCCCC-CC-CCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464 41 TNLKILSAINVGLTSLK-GF-PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 41 ~~l~~l~l~~~~~~~l~-~~-~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 99 (111)
.++..+++++|.++.+| .| ..++.++.+++..|.+.+++.++..++.|+.++++.|.+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 33444445555544444 21 1223444444555555444434444444555555544443
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=9.7e-06 Score=60.30 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=69.6
Q ss_pred CCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCC
Q psy8464 8 FEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSP 86 (111)
Q Consensus 8 ~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 86 (111)
+|.++..++ ..++.|.+.++.+..+|..+ ...+|+.+++.++.+..++ ++..+.+|+.++++++.....++.+..++
T Consensus 580 lp~~~~~lp-~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLP-PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred cCcchhhcC-cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence 455544443 67899999999998888876 4688999999999998887 67788999999998765333356677889
Q ss_pred CCcEEEcCCCC
Q psy8464 87 KLAYLNLCGNR 97 (111)
Q Consensus 87 ~L~~l~l~~n~ 97 (111)
.|+.|++.+|.
T Consensus 658 ~Le~L~L~~c~ 668 (1153)
T PLN03210 658 NLETLKLSDCS 668 (1153)
T ss_pred cccEEEecCCC
Confidence 99999998864
No 41
>KOG2739|consensus
Probab=98.14 E-value=1.1e-06 Score=54.54 Aligned_cols=91 Identities=59% Similarity=0.922 Sum_probs=61.7
Q ss_pred CccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCC--cCCCcccc-cCCCCCCcEEEc
Q psy8464 19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDN--RISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 19 ~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n--~~~~~~~~-~~~~~~L~~l~l 93 (111)
.++.+.+..+.-.. +......+..++.+.+.+.+++++.+++.+++|+.|.++.| .+....+. ...++.|+++++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 34444454433333 45555666778888888888888878888899999999988 44332333 335689999999
Q ss_pred CCCCCCCCcCCCCCCC
Q psy8464 94 CGNRIKDLETLEPLFG 109 (111)
Q Consensus 94 ~~n~l~~~~~~~~l~~ 109 (111)
+.|+++.+..+..++.
T Consensus 99 s~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKE 114 (260)
T ss_pred cCCccccccccchhhh
Confidence 9999887655554443
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.11 E-value=4.2e-06 Score=53.57 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTS-----LK-GFPELPALTRLELSDNRISGGL-----NV 81 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~~~~-----~~ 81 (111)
+.++.+++++|.++. +...+..+.+++.+++++|.++. ++ .+...++|+.+++++|.+.... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 345555555555552 22233344455555555555542 11 1223345555555555543210 11
Q ss_pred cCCCCCCcEEEcCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~ 99 (111)
+..+++|+++++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 234455555555555554
No 43
>KOG4579|consensus
Probab=98.06 E-value=4.9e-07 Score=51.62 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=71.5
Q ss_pred CCccEEEcCCCCCCChhhhh-hcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464 18 IQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG 95 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~-~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 95 (111)
.+++.+++++|.+...|..| ..++.++.+++++|.++.+| .+..++.|+.++++.|++...+..+..+.++-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 46778999999999988877 66778999999999999999 78889999999999999987666666777888888888
Q ss_pred CCCCCC
Q psy8464 96 NRIKDL 101 (111)
Q Consensus 96 n~l~~~ 101 (111)
|.+..+
T Consensus 133 na~~ei 138 (177)
T KOG4579|consen 133 NARAEI 138 (177)
T ss_pred CccccC
Confidence 877655
No 44
>KOG4658|consensus
Probab=97.86 E-value=7.1e-06 Score=59.40 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCccEEEcCCCCC-CChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccC-CCCCCcEEEcC
Q psy8464 18 IQIKELNLDNCRS-TNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQ-SSPKLAYLNLC 94 (111)
Q Consensus 18 ~~l~~l~l~~n~i-~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~ 94 (111)
+.++.||+++|.- ..+|..++.+.+|++|++.+..+..+| ++..+..|.+|++..+.....++.+. .+++|+++.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 6667777775443 337777777777777777777777766 66666667777766554332233322 46666666664
Q ss_pred CC
Q psy8464 95 GN 96 (111)
Q Consensus 95 ~n 96 (111)
..
T Consensus 651 ~s 652 (889)
T KOG4658|consen 651 RS 652 (889)
T ss_pred cc
Confidence 43
No 45
>KOG1644|consensus
Probab=97.85 E-value=3.4e-05 Score=46.77 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=35.6
Q ss_pred ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCC-CCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEcCC
Q psy8464 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFP-ELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCG 95 (111)
Q Consensus 20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~ 95 (111)
...+|+++|.+-.++.. ..+..|..|.+.+|+++.+. .+. .++.++.|.+.+|.+..+- ..+..|++|+.|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 33445555555443322 34445555555555555443 221 1234455555555544321 1233455555555555
Q ss_pred CCCC
Q psy8464 96 NRIK 99 (111)
Q Consensus 96 n~l~ 99 (111)
|.++
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 5444
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.79 E-value=1.8e-05 Score=50.69 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCCCc-----ccccCCCCCCcEEEcCCCCCC
Q psy8464 41 TNLKILSAINVGLTS-----LK-GFPELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 41 ~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~l~ 99 (111)
++++.+++++|.++. +. .+..+.+++.|++++|.+.+. ...+...+.|+.+++++|.+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 445555555555442 11 233334555555555555421 111223345666666655553
No 47
>KOG3207|consensus
Probab=97.66 E-value=2.2e-05 Score=52.39 Aligned_cols=90 Identities=30% Similarity=0.464 Sum_probs=49.2
Q ss_pred CCccEEEcCCCCCCC--hhhhhhcCCCccEEeccccc------------------------CCCCC---CCCCCCCCCEE
Q psy8464 18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVG------------------------LTSLK---GFPELPALTRL 68 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~------------------------~~~l~---~~~~l~~L~~l 68 (111)
+.++.|.++.|.++. +......+++++.+++..|. +-..+ ....++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 667778888887776 33344556666666666663 22222 12233444445
Q ss_pred EcCCCcCCCc--ccc-----cCCCCCCcEEEcCCCCCCCCcCCCCC
Q psy8464 69 ELSDNRISGG--LNV-----LQSSPKLAYLNLCGNRIKDLETLEPL 107 (111)
Q Consensus 69 ~l~~n~~~~~--~~~-----~~~~~~L~~l~l~~n~l~~~~~~~~l 107 (111)
.++.+.+.++ ++. -..+++|++|++..|++.+++.+..+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 5555554432 111 12456677777777777666555444
No 48
>KOG3207|consensus
Probab=97.65 E-value=2.9e-05 Score=51.81 Aligned_cols=84 Identities=29% Similarity=0.326 Sum_probs=56.6
Q ss_pred CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCC---------CCC------------------CCCCCCCCEE
Q psy8464 18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTS---------LKG------------------FPELPALTRL 68 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~---------l~~------------------~~~l~~L~~l 68 (111)
++++.|+++.|++.. ..... ..+.+++.|.++.+++++ +|. ..-++.|+.|
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 789999999999977 22222 467889999999999986 121 0113456667
Q ss_pred EcCCCcCCCcc--cccCCCCCCcEEEcCCCCCCCC
Q psy8464 69 ELSDNRISGGL--NVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 69 ~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
++++|++-+.. ..++.++.|..++++.+.+.++
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccCcchh
Confidence 77766665533 2355677777777777776655
No 49
>KOG4658|consensus
Probab=97.63 E-value=3.1e-05 Score=56.26 Aligned_cols=80 Identities=29% Similarity=0.291 Sum_probs=64.7
Q ss_pred CCccEEEcCCCC--CCChhh-hhhcCCCccEEeccccc-CCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEE
Q psy8464 18 IQIKELNLDNCR--STNIAA-LTSEFTNLKILSAINVG-LTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN 92 (111)
Q Consensus 18 ~~l~~l~l~~n~--i~~~~~-~~~~~~~l~~l~l~~~~-~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~ 92 (111)
+.+++|-+.+|. +..++. .|..++.|++||+++|. +..+| .+..+.+|++|++++..+..+|..++.+..|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 468888888886 555444 46889999999999654 45688 67788999999999999998777789999999999
Q ss_pred cCCCC
Q psy8464 93 LCGNR 97 (111)
Q Consensus 93 l~~n~ 97 (111)
+..+.
T Consensus 625 l~~~~ 629 (889)
T KOG4658|consen 625 LEVTG 629 (889)
T ss_pred ccccc
Confidence 98764
No 50
>KOG2982|consensus
Probab=97.40 E-value=0.00012 Score=47.19 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=54.5
Q ss_pred CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccccCCC-CCCCC-CCCCCCEEEcCCCcCCCcc--cccCCCCCCcE
Q psy8464 18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINVGLTS-LKGFP-ELPALTRLELSDNRISGGL--NVLQSSPKLAY 90 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~~~~~-l~~~~-~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~ 90 (111)
+.++.+|+.+|.|++. ......+++++.++++.|.+++ +...+ ...+++.+.+.+..+.+.. .....+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 5677889999999883 3344778889999999998875 22332 5567777777766654321 11335666666
Q ss_pred EEcCCCCCC
Q psy8464 91 LNLCGNRIK 99 (111)
Q Consensus 91 l~l~~n~l~ 99 (111)
+.++.|.+.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 777666443
No 51
>KOG2123|consensus
Probab=97.34 E-value=6.5e-06 Score=52.25 Aligned_cols=80 Identities=26% Similarity=0.258 Sum_probs=63.2
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc--cCCCCCCcEEEcCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV--LQSSPKLAYLNLCG 95 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~--~~~~~~L~~l~l~~ 95 (111)
..++.|++=||.++++.-. .+|+.+++|.++-|.++++..+..|.+|++|++..|.|.++.+- +.++++|+.|-+..
T Consensus 19 ~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4567788888888885543 67889999999999999888888888999999999998874332 55888888888877
Q ss_pred CCC
Q psy8464 96 NRI 98 (111)
Q Consensus 96 n~l 98 (111)
|.=
T Consensus 98 NPC 100 (388)
T KOG2123|consen 98 NPC 100 (388)
T ss_pred CCc
Confidence 654
No 52
>KOG3665|consensus
Probab=97.33 E-value=0.00033 Score=49.90 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=42.8
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCCCcc-------cccCCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRISGGL-------NVLQSSPK 87 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~~~~-------~~~~~~~~ 87 (111)
++|..||++++.++.+ .++..+++|+.|.+.+-.+.... .+..+++|+.||+|..+..... +....+|.
T Consensus 173 pNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred CccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 4555555555555554 22245555555555444444322 3455677777777755443211 12224677
Q ss_pred CcEEEcCCCCCC
Q psy8464 88 LAYLNLCGNRIK 99 (111)
Q Consensus 88 L~~l~l~~n~l~ 99 (111)
|+.|+.+++.+.
T Consensus 252 LrfLDcSgTdi~ 263 (699)
T KOG3665|consen 252 LRFLDCSGTDIN 263 (699)
T ss_pred ccEEecCCcchh
Confidence 777777766553
No 53
>KOG3665|consensus
Probab=97.29 E-value=0.00017 Score=51.35 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=60.5
Q ss_pred CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc--cccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l 93 (111)
|.++.|.+.+-.+.. .......+++|..||+++.+++.+.+.+.+++|+.|.+.+=.+.... ..+..++.|+.|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI 227 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI 227 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence 778888888876655 44455778888889999988888777778888888877766665421 23567888999999
Q ss_pred CCCCCC
Q psy8464 94 CGNRIK 99 (111)
Q Consensus 94 ~~n~l~ 99 (111)
+.....
T Consensus 228 S~~~~~ 233 (699)
T KOG3665|consen 228 SRDKNN 233 (699)
T ss_pred cccccc
Confidence 876543
No 54
>KOG2123|consensus
Probab=97.27 E-value=2.5e-06 Score=54.03 Aligned_cols=71 Identities=35% Similarity=0.420 Sum_probs=58.7
Q ss_pred cCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464 39 EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110 (111)
Q Consensus 39 ~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~l~~l 110 (111)
++.+.++|++.+++++.+.-..+++.|+.|.++-|+++. ...+..|.+|+.+++..|.|.++..+..+++|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 466788899999999887656678899999999999998 55678899999999999999988665555443
No 55
>KOG2739|consensus
Probab=97.10 E-value=0.0003 Score=44.06 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=25.7
Q ss_pred CCccEEEcCCC--CCCC-hhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcC
Q psy8464 18 IQIKELNLDNC--RSTN-IAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRI 75 (111)
Q Consensus 18 ~~l~~l~l~~n--~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~ 75 (111)
++|+.|.+++| ++.. ++......++|+.+.+++|++..+. .++.+.+|..|++..+..
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 34555555555 3333 3333334455555555555544322 223333444444444443
No 56
>KOG1909|consensus
Probab=96.99 E-value=0.00097 Score=43.58 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGGL-----NV 81 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~~-----~~ 81 (111)
+.++.+.+..|++.. +...+...+.++.+.+..|.+..=. .+..+++|+.|++.+|-++..- ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 567888888888766 3334555677777777777775411 4667788888888888776421 12
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~~ 100 (111)
+..++.|+.+++++|.++.
T Consensus 237 L~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred hcccchheeeccccccccc
Confidence 4466777888888877753
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00036 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=12.0
Q ss_pred ccEEEcCCCCCCChhhhh
Q psy8464 20 IKELNLDNCRSTNIAALT 37 (111)
Q Consensus 20 l~~l~l~~n~i~~~~~~~ 37 (111)
+++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 567777777777666554
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.38 E-value=0.0029 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=6.6
Q ss_pred CccEEEcCCCCCCCh
Q psy8464 19 QIKELNLDNCRSTNI 33 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~ 33 (111)
+++.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455566666665543
No 59
>KOG1909|consensus
Probab=96.09 E-value=0.0056 Score=40.21 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=28.1
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCC
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRIS 76 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~ 76 (111)
+.++.+.+..|.|.. +-..+..+++|++|++..|.++.-. .++.+++|+.++++++.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 344555555555543 2223344555666666665554411 2334445555555554444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.74 E-value=0.066 Score=36.34 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCccEEEcCC-CCCCChhhhhhcCCCccEEecccc
Q psy8464 18 IQIKELNLDN-CRSTNIAALTSEFTNLKILSAINV 51 (111)
Q Consensus 18 ~~l~~l~l~~-n~i~~~~~~~~~~~~l~~l~l~~~ 51 (111)
+.++.|.+++ +.++.+|+.+ ..+|+.|.+.++
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4466666654 3333344332 134555555554
No 61
>KOG2982|consensus
Probab=95.54 E-value=0.0095 Score=38.75 Aligned_cols=59 Identities=29% Similarity=0.451 Sum_probs=45.5
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCC
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRIS 76 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~ 76 (111)
+.++.|+++.|.+.. +....-...+++++.+.+..+.+-. .+..++.++.++++.|.+.
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 789999999999988 4333246678999999999987743 4566788889999988543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.50 E-value=0.025 Score=36.48 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=57.1
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCC------------CCCCCCCCCCCEEEcCCCcCCCc-c
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTS------------LKGFPELPALTRLELSDNRISGG-L 79 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~------------l~~~~~l~~L~~l~l~~n~~~~~-~ 79 (111)
..++.++++||.|.. +...+..-.+|+..+++.-.... ++.+-+|++++..++++|.+..- +
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 678899999999987 22333444566666665544322 12356788999999999988632 2
Q ss_pred cc----cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV----LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~----~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. +.+...+.+|.+.+|.+..+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCcc
Confidence 22 44667899999999887654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.99 E-value=0.082 Score=29.28 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=18.8
Q ss_pred CccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcC
Q psy8464 19 QIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELS 71 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~ 71 (111)
.++.+.+.. .+..++. .|..+..++.+.+..+ +..++ .|..+..++.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 455555543 3333322 2344445555555443 44443 34444455555554
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.94 E-value=0.14 Score=34.86 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=34.7
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEeccc-ccCCCCC-CCCCCCCCCEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAIN-VGLTSLK-GFPELPALTRLELSDN 73 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~-~~~~~l~-~~~~l~~L~~l~l~~n 73 (111)
..++.|++++|.+..+|.. ..+|+.|.+.+ +.++.+| .+ ...|+.|.++++
T Consensus 52 ~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 5688899999988888732 23688888876 4445555 22 246777777766
No 65
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=94.14 E-value=0.068 Score=21.54 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=12.0
Q ss_pred CCCcEEEcCCCCCCCCcCCC
Q psy8464 86 PKLAYLNLCGNRIKDLETLE 105 (111)
Q Consensus 86 ~~L~~l~l~~n~l~~~~~~~ 105 (111)
..|+.|+++.|.++.+..++
T Consensus 2 ~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 2 TNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CccCEEECCCCccceecCcc
Confidence 35666666666666655543
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.97 E-value=0.071 Score=21.09 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCcCCCcc
Q psy8464 63 PALTRLELSDNRISGGL 79 (111)
Q Consensus 63 ~~L~~l~l~~n~~~~~~ 79 (111)
.+|+.|++++|.+..++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 35566666666666543
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.97 E-value=0.071 Score=21.09 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCcCCCcc
Q psy8464 63 PALTRLELSDNRISGGL 79 (111)
Q Consensus 63 ~~L~~l~l~~n~~~~~~ 79 (111)
.+|+.|++++|.+..++
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 35566666666666543
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.56 E-value=0.31 Score=26.92 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-c
Q psy8464 7 FFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-L 82 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~ 82 (111)
.++...+... ..++.+.+.++ +..++. .+..+..++.+.+.. .+..++ .|..+..++.+.+..+ +..+... +
T Consensus 25 ~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 25 KIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred EeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence 3444433332 47889998875 666554 456676899999866 555555 5777889999999765 4443332 5
Q ss_pred CCCCCCcEEEcCC
Q psy8464 83 QSSPKLAYLNLCG 95 (111)
Q Consensus 83 ~~~~~L~~l~l~~ 95 (111)
..+ .++.+.+..
T Consensus 101 ~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 101 SNC-NLKEINIPS 112 (129)
T ss_dssp TT--T--EEE-TT
T ss_pred cCC-CceEEEECC
Confidence 566 788888765
No 69
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=93.18 E-value=0.064 Score=21.63 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=11.0
Q ss_pred CCccEEEcCCCCCCChhh
Q psy8464 18 IQIKELNLDNCRSTNIAA 35 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~ 35 (111)
..+++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 445666666666666554
No 70
>KOG0473|consensus
Probab=90.47 E-value=0.0031 Score=39.56 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=19.9
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK 57 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~ 57 (111)
...+.||++.|++..+...+..+..+..++++.|.+..+|
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~ 81 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP 81 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh
Confidence 4555666666655554444444444444445444444333
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.66 E-value=0.15 Score=19.69 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=7.0
Q ss_pred CCCcEEEcCCCCCC
Q psy8464 86 PKLAYLNLCGNRIK 99 (111)
Q Consensus 86 ~~L~~l~l~~n~l~ 99 (111)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666553
No 72
>KOG3763|consensus
Probab=86.75 E-value=0.58 Score=33.00 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=40.7
Q ss_pred CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccc--cCCCCCCCC--CCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINV--GLTSLKGFP--ELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~--~~~~l~~~~--~l~~L~~l~l~~n~~~~ 77 (111)
+.+..+++++|++..+ .......+++..|+|++| .++.-..+. +...|++|.+.+|++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 6677788888888773 334466788888999888 444322222 22457888888888764
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.28 E-value=0.86 Score=18.41 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=11.6
Q ss_pred CCccEEEcCCCCCCC
Q psy8464 18 IQIKELNLDNCRSTN 32 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~ 32 (111)
+.+++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888888865
No 74
>KOG3763|consensus
Probab=84.76 E-value=0.45 Score=33.48 Aligned_cols=61 Identities=33% Similarity=0.371 Sum_probs=42.9
Q ss_pred hcCCCccEEecccccCCCCCCCC----CCCCCCEEEcCCC--cCCCccc--ccCCCCCCcEEEcCCCCCC
Q psy8464 38 SEFTNLKILSAINVGLTSLKGFP----ELPALTRLELSDN--RISGGLN--VLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 38 ~~~~~l~~l~l~~~~~~~l~~~~----~l~~L~~l~l~~n--~~~~~~~--~~~~~~~L~~l~l~~n~l~ 99 (111)
.+++.+..+.+++|++..+..+. ..+++..|+|++| .+....+ .++. ..|+.+-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 56778888999999998876332 3478999999998 4443221 1333 34788888888875
No 75
>KOG2120|consensus
Probab=84.46 E-value=0.058 Score=35.30 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCC
Q psy8464 18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTS 55 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~ 55 (111)
+.++.+|++...|+. +-.....+..|+.+.+.++.+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD 224 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD 224 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc
Confidence 347777777777776 55555666777777777777654
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.89 E-value=0.71 Score=30.10 Aligned_cols=82 Identities=22% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCccEEEcCCCCCCChh-----hhhhcCCCccEEecccccCCCC--C-----CCCCCCCCCEEEcCCCcCCCccc-----
Q psy8464 18 IQIKELNLDNCRSTNIA-----ALTSEFTNLKILSAINVGLTSL--K-----GFPELPALTRLELSDNRISGGLN----- 80 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-----~~~~~~~~l~~l~l~~~~~~~l--~-----~~~~l~~L~~l~l~~n~~~~~~~----- 80 (111)
+.++.+.+..|++...+ ..+.....++.+.+..|++..= . ++..+.+|+.|++++|.++..-.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 44555555555554411 1222224455555666655431 1 23455678888888887764211
Q ss_pred ccCCCCCCcEEEcCCCCCC
Q psy8464 81 VLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~n~l~ 99 (111)
.+..++.|+.|.+..|.++
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 1235556677777777664
No 77
>KOG0473|consensus
Probab=79.00 E-value=0.11 Score=32.93 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=51.1
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~ 77 (111)
..+..++++.|.+..+|..++....+..+++..|..+..| ++...+++++++..++.+..
T Consensus 65 t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcchH
Confidence 4566789999999999998888888888888999999999 78888999999999888753
No 78
>KOG2120|consensus
Probab=73.21 E-value=0.68 Score=30.57 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.5
Q ss_pred CCCCCcEEEcCCCC
Q psy8464 84 SSPKLAYLNLCGNR 97 (111)
Q Consensus 84 ~~~~L~~l~l~~n~ 97 (111)
.++.+.+|+++.+.
T Consensus 311 rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSV 324 (419)
T ss_pred hCCceeeecccccc
Confidence 67778888887764
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.96 E-value=5.4 Score=15.49 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=10.6
Q ss_pred CCCCcEEEcCCCC-CC
Q psy8464 85 SPKLAYLNLCGNR-IK 99 (111)
Q Consensus 85 ~~~L~~l~l~~n~-l~ 99 (111)
+++|+.|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888874 44
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.97 E-value=8 Score=32.93 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=24.6
Q ss_pred EcCCCCCCChhh-hhhcCCCccEEecccccCC
Q psy8464 24 NLDNCRSTNIAA-LTSEFTNLKILSAINVGLT 54 (111)
Q Consensus 24 ~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~ 54 (111)
||++|+|+.++. .|..+.+|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578899998555 4577888999999988765
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.55 E-value=7 Score=33.23 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.4
Q ss_pred ecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 47 SAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 47 ~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
+|++|.++.++ .|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 57889999988 58888899999999998763
No 82
>KOG1947|consensus
Probab=52.57 E-value=11 Score=25.55 Aligned_cols=80 Identities=29% Similarity=0.394 Sum_probs=39.8
Q ss_pred CCccEEEcCCC-C-CCCh----hhhhhcCCCccEEeccccc-CCCCC--CC-CCCCCCCEEEcCCCc-CCCc-ccc-cCC
Q psy8464 18 IQIKELNLDNC-R-STNI----AALTSEFTNLKILSAINVG-LTSLK--GF-PELPALTRLELSDNR-ISGG-LNV-LQS 84 (111)
Q Consensus 18 ~~l~~l~l~~n-~-i~~~----~~~~~~~~~l~~l~l~~~~-~~~l~--~~-~~l~~L~~l~l~~n~-~~~~-~~~-~~~ 84 (111)
+.++.++++++ . +... ......+..++.+++.+.. ++... .+ ..++.|+.|.+.... +++. ... ...
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 56777777652 1 1111 1222444666777776666 44322 11 125567777654444 3321 111 225
Q ss_pred CCCCcEEEcCCCC
Q psy8464 85 SPKLAYLNLCGNR 97 (111)
Q Consensus 85 ~~~L~~l~l~~n~ 97 (111)
++.|++++++.+.
T Consensus 294 ~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 294 CPSLRELDLSGCH 306 (482)
T ss_pred cCcccEEeeecCc
Confidence 6667777777554
No 83
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=34.67 E-value=24 Score=14.11 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=5.4
Q ss_pred CCCCCCCCCcc
Q psy8464 2 NSNLPFFEPDT 12 (111)
Q Consensus 2 ~~~l~~~p~~~ 12 (111)
..+|.++|+++
T Consensus 17 ~~~L~~vP~~l 27 (28)
T PF01462_consen 17 GRGLTAVPSDL 27 (28)
T ss_dssp TSS-SSS-STS
T ss_pred CCCCCccCCCC
Confidence 35677777654
No 84
>KOG3864|consensus
Probab=23.73 E-value=32 Score=21.58 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=27.2
Q ss_pred CCccEEEcCCCCCCC---hhhhhhcCCCccEEeccccc-CCCCC--CCCCCCCCCEEEcC
Q psy8464 18 IQIKELNLDNCRSTN---IAALTSEFTNLKILSAINVG-LTSLK--GFPELPALTRLELS 71 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~---~~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~l~~L~~l~l~ 71 (111)
..++.+.+.+|.--+ +....+-.++|+.|++++|. +++-. .+..+++|+.|.+.
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 345555555543222 23333455778888888664 44322 23344555555544
Done!