Query psy8464
Match_columns 111
No_of_seqs 118 out of 2439
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 19:33:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wfh_A SLIT homolog 2 protein 99.7 1.9E-15 6.6E-20 89.8 12.5 97 2-102 19-118 (193)
2 4g8a_A TOLL-like receptor 4; l 99.6 2.8E-15 9.7E-20 101.4 10.6 97 2-102 40-140 (635)
3 2v9t_B SLIT homolog 2 protein 99.6 9.9E-15 3.4E-19 88.2 11.3 85 18-102 56-144 (220)
4 2r9u_A Variable lymphocyte rec 99.6 8.9E-15 3E-19 85.7 10.7 96 2-101 21-120 (174)
5 3g39_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 84.7 10.8 96 2-101 18-117 (170)
6 1w8a_A SLIT protein; signaling 99.6 1.8E-14 6.1E-19 85.4 10.8 96 2-101 17-117 (192)
7 3e6j_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 86.3 11.8 84 18-101 64-150 (229)
8 3e6j_A Variable lymphocyte rec 99.6 7.3E-14 2.5E-18 84.9 12.1 96 2-101 28-127 (229)
9 2v70_A SLIT-2, SLIT homolog 2 99.6 5.1E-14 1.7E-18 85.1 10.7 84 18-101 57-144 (220)
10 2wfh_A SLIT homolog 2 protein 99.6 4.8E-14 1.6E-18 83.7 10.3 97 2-100 40-140 (193)
11 2o6s_A Variable lymphocyte rec 99.6 1.6E-13 5.5E-18 82.0 12.6 84 18-101 52-139 (208)
12 1dce_A Protein (RAB geranylger 99.6 2.7E-14 9.3E-19 96.7 10.1 98 2-102 450-549 (567)
13 2o6r_A Variable lymphocyte rec 99.6 1.6E-13 5.4E-18 80.2 12.2 96 3-102 17-116 (177)
14 1xeu_A Internalin C; cellular 99.6 1.1E-13 3.9E-18 85.6 12.1 98 3-106 51-148 (263)
15 2v9t_B SLIT homolog 2 protein 99.6 6.8E-14 2.3E-18 84.6 10.7 96 2-101 20-119 (220)
16 3m19_A Variable lymphocyte rec 99.6 1.7E-13 5.8E-18 84.1 12.6 63 39-101 105-170 (251)
17 3m19_A Variable lymphocyte rec 99.6 2.2E-13 7.5E-18 83.6 12.6 98 3-102 45-147 (251)
18 1w8a_A SLIT protein; signaling 99.6 5.7E-14 1.9E-18 83.3 9.7 98 2-101 38-141 (192)
19 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.8E-18 83.6 10.5 96 2-101 20-120 (220)
20 4b8c_D Glucose-repressible alc 99.5 2.5E-14 8.6E-19 99.2 8.6 95 4-100 235-330 (727)
21 1p9a_G Platelet glycoprotein I 99.5 2.9E-13 9.9E-18 84.9 12.1 97 3-101 87-187 (290)
22 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.9E-18 86.2 10.5 85 18-102 77-164 (290)
23 3rfs_A Internalin B, repeat mo 99.5 4.9E-13 1.7E-17 83.0 12.6 96 4-101 96-196 (272)
24 2o6s_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 79.9 12.2 96 3-102 17-116 (208)
25 1xeu_A Internalin C; cellular 99.5 2E-13 6.8E-18 84.5 10.0 103 2-110 72-174 (263)
26 1h6u_A Internalin H; cell adhe 99.5 3.9E-13 1.3E-17 84.8 11.5 96 4-104 52-147 (308)
27 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.3E-19 82.0 4.9 93 7-102 33-129 (149)
28 2ell_A Acidic leucine-rich nuc 99.5 4.1E-14 1.4E-18 82.0 6.4 92 7-101 40-135 (168)
29 4g8a_A TOLL-like receptor 4; l 99.5 9E-14 3.1E-18 94.0 8.9 97 3-101 62-163 (635)
30 2o6q_A Variable lymphocyte rec 99.5 9E-13 3.1E-17 81.7 12.7 84 18-101 109-196 (270)
31 2o6q_A Variable lymphocyte rec 99.5 9.4E-13 3.2E-17 81.6 12.6 84 18-101 85-172 (270)
32 2o6r_A Variable lymphocyte rec 99.5 6.9E-13 2.3E-17 77.5 11.2 97 2-100 37-138 (177)
33 1h6t_A Internalin B; cell adhe 99.5 4.4E-13 1.5E-17 84.0 10.9 82 18-101 68-149 (291)
34 2z80_A TOLL-like receptor 2, v 99.5 3.5E-13 1.2E-17 86.3 10.2 98 2-103 40-141 (353)
35 3rfs_A Internalin B, repeat mo 99.5 1.2E-12 4E-17 81.3 12.2 84 18-101 85-172 (272)
36 1h6t_A Internalin B; cell adhe 99.5 4.5E-13 1.6E-17 84.0 10.3 90 18-109 112-201 (291)
37 4ezg_A Putative uncharacterize 99.5 7.2E-13 2.5E-17 78.7 10.2 95 4-102 55-153 (197)
38 4fcg_A Uncharacterized protein 99.5 2.4E-13 8.2E-18 86.5 8.3 84 18-101 127-221 (328)
39 2xot_A Amphoterin-induced prot 99.5 4.4E-13 1.5E-17 86.2 9.3 84 18-101 64-151 (361)
40 4b8c_D Glucose-repressible alc 99.5 2.3E-13 8E-18 94.4 8.4 93 18-110 224-318 (727)
41 2ifg_A High affinity nerve gro 99.5 4.4E-13 1.5E-17 85.6 9.0 94 4-101 20-118 (347)
42 1h6u_A Internalin H; cell adhe 99.5 1.2E-12 4E-17 82.7 10.9 93 4-101 74-166 (308)
43 1m9s_A Internalin B; cell inva 99.5 1.5E-12 5.3E-17 88.8 12.2 102 3-109 53-154 (605)
44 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.6E-18 80.6 6.1 82 19-101 43-128 (176)
45 3zyi_A Leucine-rich repeat-con 99.4 1E-12 3.5E-17 86.6 10.4 95 3-101 64-162 (452)
46 2z62_A TOLL-like receptor 4, v 99.4 1.6E-12 5.3E-17 80.7 10.7 94 3-100 17-114 (276)
47 4fcg_A Uncharacterized protein 99.4 1.5E-12 5E-17 82.9 10.7 93 5-99 195-290 (328)
48 2je0_A Acidic leucine-rich nuc 99.4 2.8E-13 9.7E-18 77.1 6.5 86 16-101 15-103 (149)
49 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.1E-18 78.6 6.4 87 16-102 22-111 (168)
50 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 78.6 7.0 88 16-103 17-105 (176)
51 3vq2_A TLR4, TOLL-like recepto 99.4 1.8E-12 6.1E-17 87.8 11.1 93 3-99 21-117 (606)
52 4ezg_A Putative uncharacterize 99.4 6.1E-13 2.1E-17 79.0 7.8 97 11-110 83-183 (197)
53 2xot_A Amphoterin-induced prot 99.4 7E-13 2.4E-17 85.3 8.5 96 2-101 27-127 (361)
54 2z81_A CD282 antigen, TOLL-lik 99.4 1.4E-12 4.8E-17 87.4 10.2 96 2-101 14-113 (549)
55 1m9s_A Internalin B; cell inva 99.4 2.2E-12 7.6E-17 88.0 11.1 91 18-110 109-199 (605)
56 3g39_A Variable lymphocyte rec 99.4 2.5E-12 8.5E-17 74.9 9.9 89 20-110 11-104 (170)
57 1ozn_A Reticulon 4 receptor; N 99.4 3.9E-12 1.3E-16 79.2 11.3 82 18-99 56-142 (285)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.9E-12 6.7E-17 87.2 10.4 93 3-101 41-136 (562)
59 3zyj_A Leucine-rich repeat-con 99.4 1.7E-12 5.8E-17 85.3 9.7 95 3-101 53-151 (440)
60 3o6n_A APL1; leucine-rich repe 99.4 1.6E-12 5.5E-17 84.1 9.4 84 18-101 69-156 (390)
61 2r9u_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 74.6 9.8 89 20-110 14-107 (174)
62 2z7x_B TOLL-like receptor 1, v 99.4 1.6E-12 5.5E-17 86.7 9.3 93 2-100 9-104 (520)
63 1ozn_A Reticulon 4 receptor; N 99.4 5.1E-12 1.7E-16 78.7 10.7 83 18-100 105-191 (285)
64 2z63_A TOLL-like receptor 4, v 99.4 3.4E-12 1.2E-16 85.8 10.4 95 3-101 17-115 (570)
65 2z62_A TOLL-like receptor 4, v 99.4 3.5E-12 1.2E-16 79.1 9.8 83 18-100 52-138 (276)
66 3t6q_A CD180 antigen; protein- 99.4 3.2E-12 1.1E-16 86.6 10.2 94 3-100 22-119 (606)
67 1ziw_A TOLL-like receptor 3; i 99.4 1E-11 3.5E-16 85.1 12.7 84 18-101 49-136 (680)
68 3v47_A TOLL-like receptor 5B a 99.4 2.4E-12 8.2E-17 84.6 9.2 84 18-101 299-386 (455)
69 3oja_B Anopheles plasmodium-re 99.4 2.3E-12 7.8E-17 87.6 9.3 84 18-101 75-162 (597)
70 3zyi_A Leucine-rich repeat-con 99.4 4.8E-12 1.7E-16 83.4 10.4 60 18-77 99-161 (452)
71 2id5_A Lingo-1, leucine rich r 99.4 4.7E-12 1.6E-16 83.8 10.3 93 3-99 21-117 (477)
72 2id5_A Lingo-1, leucine rich r 99.4 4.2E-12 1.4E-16 84.0 9.9 97 3-101 42-143 (477)
73 1dce_A Protein (RAB geranylger 99.4 2.1E-12 7.2E-17 87.5 8.6 82 18-101 441-523 (567)
74 3zyj_A Leucine-rich repeat-con 99.4 8.3E-12 2.8E-16 82.0 11.2 60 18-77 88-150 (440)
75 3o6n_A APL1; leucine-rich repe 99.4 9.4E-12 3.2E-16 80.5 10.9 97 3-101 79-180 (390)
76 3t6q_A CD180 antigen; protein- 99.4 6.2E-12 2.1E-16 85.2 10.3 97 3-101 43-144 (606)
77 2xwt_C Thyrotropin receptor; s 99.4 9.8E-13 3.3E-17 80.1 5.9 89 18-106 31-125 (239)
78 4fmz_A Internalin; leucine ric 99.4 1.8E-11 6.1E-16 78.0 11.8 88 4-96 55-142 (347)
79 3vq2_A TLR4, TOLL-like recepto 99.4 8.6E-12 2.9E-16 84.5 10.7 95 4-100 43-142 (606)
80 3oja_B Anopheles plasmodium-re 99.4 1E-11 3.5E-16 84.4 10.9 97 3-101 85-186 (597)
81 1xku_A Decorin; proteoglycan, 99.4 7.4E-12 2.5E-16 79.4 9.5 84 18-101 192-278 (330)
82 4fmz_A Internalin; leucine ric 99.4 5.7E-12 2E-16 80.2 8.8 90 18-108 243-333 (347)
83 3oja_A Leucine-rich immune mol 99.4 4.3E-12 1.5E-16 84.6 8.5 98 3-102 130-230 (487)
84 3o53_A Protein LRIM1, AGAP0063 99.3 6.2E-12 2.1E-16 79.5 8.7 84 18-101 144-229 (317)
85 2ft3_A Biglycan; proteoglycan, 99.3 1.7E-11 5.7E-16 77.9 10.5 60 18-77 54-116 (332)
86 1o6v_A Internalin A; bacterial 99.3 1.1E-11 3.7E-16 82.0 9.7 101 3-108 56-156 (466)
87 3rgz_A Protein brassinosteroid 99.3 3.3E-12 1.1E-16 88.9 7.5 83 18-100 632-718 (768)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.2E-11 4.2E-16 83.4 9.8 96 2-100 61-160 (562)
89 3bz5_A Internalin-J, INLJ; leu 99.3 4.3E-11 1.5E-15 79.2 12.1 90 4-101 53-142 (457)
90 1ziw_A TOLL-like receptor 3; i 99.3 1.3E-11 4.6E-16 84.6 10.0 105 2-110 13-123 (680)
91 2z7x_B TOLL-like receptor 1, v 99.3 7.5E-12 2.6E-16 83.5 8.2 96 2-100 30-129 (520)
92 2z66_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 78.0 8.1 83 18-100 150-237 (306)
93 2z80_A TOLL-like receptor 2, v 99.3 5.4E-12 1.8E-16 80.7 6.8 96 3-100 62-164 (353)
94 2z63_A TOLL-like receptor 4, v 99.3 2.1E-11 7.1E-16 82.0 9.9 83 18-100 52-138 (570)
95 1ogq_A PGIP-2, polygalacturona 99.3 2.9E-12 1E-16 81.0 5.3 91 7-99 67-162 (313)
96 3v47_A TOLL-like receptor 5B a 99.3 2.2E-11 7.4E-16 80.0 9.6 96 4-101 310-410 (455)
97 2xwt_C Thyrotropin receptor; s 99.3 2.8E-12 9.7E-17 78.1 4.8 82 18-100 55-145 (239)
98 4eco_A Uncharacterized protein 99.3 1.8E-12 6.2E-17 88.7 4.2 98 4-103 194-322 (636)
99 1o6v_A Internalin A; bacterial 99.3 4.7E-11 1.6E-15 79.0 10.7 82 18-101 287-368 (466)
100 2ft3_A Biglycan; proteoglycan, 99.3 8.1E-12 2.8E-16 79.3 6.6 82 19-100 194-278 (332)
101 1xku_A Decorin; proteoglycan, 99.3 7.4E-11 2.5E-15 74.8 10.7 60 18-77 52-114 (330)
102 2z66_A Variable lymphocyte rec 99.3 1.5E-11 5.3E-16 77.2 7.4 81 18-98 52-138 (306)
103 3j0a_A TOLL-like receptor 5; m 99.3 2.9E-11 9.8E-16 85.0 9.4 93 2-99 13-110 (844)
104 4ecn_A Leucine-rich repeat pro 99.3 4.3E-12 1.5E-16 89.6 4.4 92 8-101 481-588 (876)
105 3bz5_A Internalin-J, INLJ; leu 99.2 8E-11 2.7E-15 78.0 10.1 88 18-110 42-129 (457)
106 2z81_A CD282 antigen, TOLL-lik 99.2 6.5E-11 2.2E-15 79.4 9.4 40 61-101 449-488 (549)
107 4eco_A Uncharacterized protein 99.2 5.3E-11 1.8E-15 81.5 9.0 83 19-101 489-581 (636)
108 1ogq_A PGIP-2, polygalacturona 99.2 2.1E-11 7.3E-16 77.0 6.5 40 60-99 218-257 (313)
109 4ay9_X Follicle-stimulating ho 99.2 2.4E-11 8.3E-16 77.8 6.7 98 2-103 18-121 (350)
110 4glp_A Monocyte differentiatio 99.2 7.7E-11 2.6E-15 74.3 8.9 90 18-109 197-295 (310)
111 4ecn_A Leucine-rich repeat pro 99.2 7.5E-11 2.6E-15 83.4 9.2 94 5-101 504-610 (876)
112 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 76.2 7.4 80 22-102 12-96 (347)
113 1jl5_A Outer protein YOPM; leu 99.2 2.6E-10 8.8E-15 75.5 11.1 38 19-57 132-169 (454)
114 1wwl_A Monocyte differentiatio 99.2 8.5E-11 2.9E-15 74.2 8.2 86 18-105 201-293 (312)
115 3j0a_A TOLL-like receptor 5; m 99.2 1.1E-10 3.7E-15 82.2 9.5 86 18-103 290-379 (844)
116 1wwl_A Monocyte differentiatio 99.2 3.7E-11 1.3E-15 75.8 6.2 82 18-99 121-214 (312)
117 3cvr_A Invasion plasmid antige 99.2 4.3E-10 1.5E-14 76.4 11.6 87 3-101 69-155 (571)
118 1ds9_A Outer arm dynein; leuci 99.2 2.9E-14 9.9E-19 84.8 -7.8 91 6-100 38-129 (198)
119 3o53_A Protein LRIM1, AGAP0063 99.2 3.1E-11 1E-15 76.3 5.4 81 18-99 169-250 (317)
120 3rgz_A Protein brassinosteroid 99.2 1.9E-10 6.4E-15 80.2 9.2 82 18-99 442-527 (768)
121 3cvr_A Invasion plasmid antige 99.1 7.1E-10 2.4E-14 75.4 10.9 76 18-101 100-175 (571)
122 1jl5_A Outer protein YOPM; leu 99.1 9.5E-10 3.3E-14 72.8 11.1 83 18-106 111-193 (454)
123 4glp_A Monocyte differentiatio 99.1 1E-10 3.5E-15 73.7 5.9 80 18-100 224-308 (310)
124 3g06_A SSPH2 (leucine-rich rep 99.1 8E-10 2.7E-14 75.8 10.1 66 3-77 50-115 (622)
125 1ds9_A Outer arm dynein; leuci 99.1 3.1E-13 1.1E-17 80.3 -6.6 94 4-100 59-154 (198)
126 3g06_A SSPH2 (leucine-rich rep 99.1 1E-09 3.5E-14 75.3 9.6 78 18-100 221-298 (622)
127 3oja_A Leucine-rich immune mol 99.1 1.6E-10 5.5E-15 77.0 5.6 81 18-99 169-250 (487)
128 4ay9_X Follicle-stimulating ho 99.0 3.2E-09 1.1E-13 68.0 8.5 105 4-110 140-248 (350)
129 2ast_B S-phase kinase-associat 98.8 2.6E-09 9E-14 67.6 2.7 92 6-99 83-182 (336)
130 3goz_A Leucine-rich repeat-con 98.7 5.2E-09 1.8E-13 67.2 2.6 82 18-99 22-122 (362)
131 2ca6_A RAN GTPase-activating p 98.6 2.7E-08 9.4E-13 64.3 4.4 81 19-99 160-257 (386)
132 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.3E-12 60.0 7.3 83 18-102 226-313 (329)
133 2ca6_A RAN GTPase-activating p 98.6 1.6E-08 5.6E-13 65.3 2.7 83 18-100 216-317 (386)
134 3rw6_A Nuclear RNA export fact 98.6 8.3E-08 2.8E-12 59.6 4.9 60 39-99 168-233 (267)
135 2ast_B S-phase kinase-associat 98.5 1.2E-07 4E-12 60.0 3.4 79 18-96 168-257 (336)
136 3goz_A Leucine-rich repeat-con 98.4 1.2E-07 4.2E-12 60.9 3.3 37 19-55 168-210 (362)
137 3rw6_A Nuclear RNA export fact 98.4 2.9E-07 9.8E-12 57.2 4.3 74 18-92 170-257 (267)
138 3sb4_A Hypothetical leucine ri 98.4 1.1E-06 3.7E-11 55.8 6.3 87 4-93 237-328 (329)
139 3un9_A NLR family member X1; l 98.3 2.1E-07 7.2E-12 60.3 1.8 82 18-99 155-252 (372)
140 1z7x_W Ribonuclease inhibitor; 98.3 4.9E-07 1.7E-11 59.4 3.6 80 19-98 200-296 (461)
141 1z7x_W Ribonuclease inhibitor; 98.3 4.5E-07 1.5E-11 59.6 2.8 34 43-76 87-126 (461)
142 1io0_A Tropomodulin; LRR prote 98.2 1.2E-06 4E-11 51.5 3.0 82 18-99 36-136 (185)
143 1io0_A Tropomodulin; LRR prote 98.1 1.1E-06 3.7E-11 51.7 2.6 82 18-99 65-164 (185)
144 3un9_A NLR family member X1; l 98.1 6.3E-07 2.2E-11 58.0 1.3 38 62-99 182-224 (372)
145 3ogk_B Coronatine-insensitive 97.9 5E-06 1.7E-10 56.2 2.4 84 18-101 436-528 (592)
146 4fdw_A Leucine rich hypothetic 97.8 0.00012 3.9E-09 48.0 7.3 81 18-101 271-360 (401)
147 3rfe_A Platelet glycoprotein I 97.8 0.00015 5.1E-09 40.3 6.6 54 21-76 11-68 (130)
148 3e4g_A ATP synthase subunit S, 97.8 6.4E-06 2.2E-10 48.2 1.0 83 18-100 61-154 (176)
149 3rfe_A Platelet glycoprotein I 97.6 0.00017 5.9E-09 40.0 5.3 49 2-54 17-68 (130)
150 3ogk_B Coronatine-insensitive 97.5 0.00043 1.5E-08 46.8 7.6 82 18-99 192-306 (592)
151 4fdw_A Leucine rich hypothetic 97.4 0.0013 4.5E-08 43.0 8.5 57 37-95 176-235 (401)
152 2p1m_B Transport inhibitor res 97.3 8.7E-05 3E-09 50.2 2.0 80 18-97 105-195 (594)
153 2p1m_B Transport inhibitor res 97.3 4.3E-05 1.5E-09 51.7 0.2 80 18-98 432-518 (594)
154 4h09_A Hypothetical leucine ri 96.7 0.0054 1.8E-07 39.4 5.9 57 37-94 282-341 (379)
155 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0015 5.3E-08 38.8 2.9 79 18-96 41-136 (197)
156 4h09_A Hypothetical leucine ri 96.6 0.022 7.7E-07 36.5 8.5 77 18-96 240-320 (379)
157 4gt6_A Cell surface protein; l 96.5 0.018 6.3E-07 37.2 7.9 77 18-97 288-368 (394)
158 4gt6_A Cell surface protein; l 96.5 0.019 6.5E-07 37.2 7.5 81 18-101 265-348 (394)
159 3e4g_A ATP synthase subunit S, 96.2 0.00049 1.7E-08 40.2 -0.9 61 40-100 60-129 (176)
160 4fs7_A Uncharacterized protein 96.1 0.013 4.4E-07 38.0 5.4 76 18-96 297-376 (394)
161 2ra8_A Uncharacterized protein 96.0 0.0075 2.6E-07 39.0 3.7 83 18-100 193-293 (362)
162 2ra8_A Uncharacterized protein 95.6 0.0031 1.1E-07 40.8 0.9 82 18-99 219-320 (362)
163 4fs7_A Uncharacterized protein 95.4 0.018 6E-07 37.3 3.9 83 5-91 308-393 (394)
164 1pgv_A TMD-1, tropomodulin TMD 95.2 0.017 5.8E-07 34.3 3.1 81 18-98 70-169 (197)
165 2lz0_A Uncharacterized protein 80.6 4.4 0.00015 21.0 5.0 35 37-72 16-52 (100)
No 1
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.9e-15 Score=89.79 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=83.4
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
++.+.++|..++ +.++.|++++|.++.+|..+..+.+|+.+++++|.++.++ .|..+.+|+.|++++|.+..++
T Consensus 19 ~~~l~~ip~~~~----~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 19 NKGLKVLPKGIP----RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp TSCCSSCCSCCC----TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCcCCCCCC----CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 456788886543 6799999999999998888899999999999999999887 5888999999999999998866
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~~ 102 (111)
+. +..+++|+.|++++|.++.+.
T Consensus 95 ~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 95 PRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCC
T ss_pred HHHhCCCCCCCEEECCCCCCCeeC
Confidence 54 778899999999999998764
No 2
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=2.8e-15 Score=101.36 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=76.9
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+|.++|+.++ +.++.|++++|.|+.++ ..|..+++|+.|++++|.++.++ .|..+++|++|++++|+++.+
T Consensus 40 ~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 457888887643 66888999999998855 46788888999999998888876 578888888888888888876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~~ 102 (111)
++. +..+++|++|++++|.++++.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCC
Confidence 544 678888888888888887764
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=9.9e-15 Score=88.24 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=61.4
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++. .+..+..+.+|+.+++++|.++.++ .|..+.+|+.|++++|.+..+.+. +..++.|+.|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 567777777777777 3666677777777777777777776 366777778888887777765433 667777888888
Q ss_pred CCCCCCCCc
Q psy8464 94 CGNRIKDLE 102 (111)
Q Consensus 94 ~~n~l~~~~ 102 (111)
++|.++.+.
T Consensus 136 ~~N~l~~~~ 144 (220)
T 2v9t_B 136 YDNKLQTIA 144 (220)
T ss_dssp CSSCCSCCC
T ss_pred CCCcCCEEC
Confidence 888777653
No 4
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=8.9e-15 Score=85.66 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=83.9
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.+.++|..+. +.++.|++++|.++.+ |..+..+.+|+.+++++|.++.++ .|..+.+|+.|++++|.+..+
T Consensus 21 ~n~l~~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 21 NIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp SSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 456888887653 7799999999999995 667899999999999999999988 368899999999999999987
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. +..+++|+++++++|.+...
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CHHHhccccCCCEEEeCCCCcccc
Confidence 665 78899999999999998754
No 5
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=1.2e-14 Score=84.72 Aligned_cols=96 Identities=23% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.+.++|..+. +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++ .|..+++|++|++++|.+..+
T Consensus 18 ~n~l~~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 18 GKSLASVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp TSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence 466888887653 7799999999999995 667899999999999999999988 478899999999999999987
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. +..+++|+.+++++|.+...
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CHHHhcCCCCCCEEEeCCCCCCCC
Confidence 665 77899999999999998643
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=1.8e-14 Score=85.45 Aligned_cols=96 Identities=24% Similarity=0.289 Sum_probs=71.3
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh--hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA--LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~--~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
++.+.++|..++ ..+++|++++|.++.++. .+..+.+|+.+++++|.++.+. .+..+.+|+.|++++|.+..
T Consensus 17 ~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 92 (192)
T 1w8a_A 17 GRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92 (192)
T ss_dssp TSCCSSCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred CCCcCcCccCCC----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc
Confidence 356777776543 467888888888888554 3677888888888888888763 57778888888888888877
Q ss_pred cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 78 GLNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 78 ~~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+++. ++.++.|++|++++|.++++
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred cCHHHhcCCCCCCEEECCCCcCCee
Confidence 5544 66778888888888887754
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=3.5e-14 Score=86.26 Aligned_cols=84 Identities=25% Similarity=0.286 Sum_probs=43.7
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcC
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLC 94 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~ 94 (111)
+.++.|++++|.++.++. .+..+++|+.+++++|.++.++ .+..+.+|+.|++++|.+..++..+..+++|++|+++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECC
Confidence 445555555555554332 2344555555555555555544 2445555555555555555443344555556666666
Q ss_pred CCCCCCC
Q psy8464 95 GNRIKDL 101 (111)
Q Consensus 95 ~n~l~~~ 101 (111)
+|.++.+
T Consensus 144 ~N~l~~~ 150 (229)
T 3e6j_A 144 QNQLKSI 150 (229)
T ss_dssp SSCCCCC
T ss_pred CCcCCcc
Confidence 6655544
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=7.3e-14 Score=84.87 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.+..+|..+. +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++ .+..+++|+.|++++|.+..+
T Consensus 28 ~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 28 SKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 345777776543 7789999999999984 666788899999999999998887 467888999999999998876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. +..+++|+.|++++|.++.+
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~l 127 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTEL 127 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSC
T ss_pred ChhHhCcchhhCeEeccCCccccc
Confidence 554 66888999999999988876
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=5.1e-14 Score=85.13 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=52.0
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.++. .+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+.+. +..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 556666666666666333 4566666666666666666655 355666666666666666654333 556666777777
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++++
T Consensus 137 ~~N~l~~~ 144 (220)
T 2v70_A 137 YDNQITTV 144 (220)
T ss_dssp TTSCCCCB
T ss_pred CCCcCCEE
Confidence 77766655
No 10
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.8e-14 Score=83.74 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.+..+|+.+..+ +.++.|++++|.++.++ ..+..+.+|+.+++++|.++.++ .|..+++|+.|++++|.+..+
T Consensus 40 ~n~i~~ip~~~~~l--~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 40 GNQFTLVPKELSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp SSCCCSCCGGGGGC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCcCchhHHHhhcc--cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence 46678888777666 89999999999999954 56799999999999999999987 588999999999999999986
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~ 100 (111)
++. +..++.|+.+++++|.+..
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 118 PEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCEEC
T ss_pred ChhhhhcCccccEEEeCCCCeec
Confidence 654 7789999999999998864
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.6e-13 Score=82.00 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=52.0
Q ss_pred CCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.++.. +..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+++. +..++.|+++++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 5666666666666664432 355666666666666666655 255666666666666666654443 456666777777
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++++
T Consensus 132 ~~N~l~~~ 139 (208)
T 2o6s_A 132 YQNQLKSV 139 (208)
T ss_dssp CSSCCSCC
T ss_pred CCCcccee
Confidence 76666654
No 12
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=2.7e-14 Score=96.70 Aligned_cols=98 Identities=28% Similarity=0.463 Sum_probs=87.9
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCc--c
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG--L 79 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~--~ 79 (111)
++.+..+|. +..+ +.++.|++++|.++.+|..++.+++|+.|++++|.++.+|.+..+++|+.|++++|.+... +
T Consensus 450 ~n~l~~lp~-~~~l--~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 450 HKDLTVLCH-LEQL--LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp TSCCSSCCC-GGGG--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred CCCCCCCcC-cccc--ccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc
Confidence 457778876 7777 8999999999999999999999999999999999999998888899999999999999987 4
Q ss_pred cccCCCCCCcEEEcCCCCCCCCc
Q psy8464 80 NVLQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 80 ~~~~~~~~L~~l~l~~n~l~~~~ 102 (111)
..++.++.|+.|++++|.++++.
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSS
T ss_pred HHHhcCCCCCEEEecCCcCCCCc
Confidence 55889999999999999998764
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-13 Score=80.21 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+.+..+|..+. +.++.|++++|.++.++. .+..+.+|+.+++++|.++.++ .+..+.+|+.|++++|.+...+
T Consensus 17 ~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 17 KGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp SCCSSCCTTCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCCCCCC----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 45666665432 567888888888877544 3467778888888888887766 3667778888888888877655
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~~ 102 (111)
+. ++.++.|+++++++|.++++.
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHHhhCCcccCEEECcCCcceEeC
Confidence 44 567778888888888777653
No 14
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.1e-13 Score=85.64 Aligned_cols=98 Identities=26% Similarity=0.394 Sum_probs=64.6
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
+.+..+| .+..+ +.++.|++++|.++.++. +..+++|+.+++++|.++.++.+.. .+|+.|++++|.+.. .+.+
T Consensus 51 n~i~~l~-~l~~l--~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~-~~~l 124 (263)
T 1xeu_A 51 SNIQSLA-GMQFF--TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD-TDSL 124 (263)
T ss_dssp SCCCCCT-TGGGC--TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB-SGGG
T ss_pred CCcccch-HHhhC--CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC-Chhh
Confidence 4455665 45555 778888888888888666 6778888888888888777664433 666666666666665 3445
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDLETLEP 106 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~~~~~~ 106 (111)
+.++.|+.|++++|.+++++.+..
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~~l~~ 148 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIVMLGF 148 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCGGGGG
T ss_pred cCcccccEEECCCCcCCCChHHcc
Confidence 566666666666666665544333
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=6.8e-14 Score=84.58 Aligned_cols=96 Identities=23% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.+.++|..++ +.++.|++++|.++.++. .+..+.+|+.+++++|.++.+. .|..+.+|++|++++|.+..+
T Consensus 20 ~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 20 GKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 456788887543 679999999999999554 6788999999999999999874 788999999999999999986
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. +..++.|+.|++++|.++.+
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CHhHccCCCCCCEEECCCCCCCEe
Confidence 655 67899999999999999876
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.7e-13 Score=84.13 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=26.2
Q ss_pred cCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 39 EFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 39 ~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
.+++|+.+++++|.++.++ .+..+.+|+.|++++|.+..+++. ++.++.|++|++++|.++++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 3334444444444443333 133344444444444444433321 33444444444444444433
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=2.2e-13 Score=83.62 Aligned_cols=98 Identities=24% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+..+++. +..+ +.+++|++++|.++. .+..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+
T Consensus 45 n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 122 (251)
T 3m19_A 45 TGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122 (251)
T ss_dssp SCCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCccCHhHhcCc--ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc
Confidence 455556554 3334 788888888888888 4444677888888888888888776 467788888888888888875
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~~ 102 (111)
++. +..++.|+.|++++|.++++.
T Consensus 123 ~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 123 PSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ChhHhccCCcccEEECcCCcCCccC
Confidence 554 567888888888888887764
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=5.7e-14 Score=83.29 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=83.9
Q ss_pred CCCCCCCCCc--ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCC
Q psy8464 2 NSNLPFFEPD--TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRIS 76 (111)
Q Consensus 2 ~~~l~~~p~~--~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~ 76 (111)
++.+..+++. +..+ +.++.|++++|.++. .|..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+.
T Consensus 38 ~n~i~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 38 DNELGRISSDGLFGRL--PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp SCCCCSBCCSCSGGGC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCCccccccC--CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 4567777764 4455 899999999999999 4778899999999999999999877 4888999999999999998
Q ss_pred Ccccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 77 GGLNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 77 ~~~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
...+. +..++.|+++++++|.+..-
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 76544 77899999999999998753
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=83.64 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChh--hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIA--ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~--~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
++.+..+|..+. ..++.|++++|.++.++ ..+..+++|+.+++++|.++.++ .+..+.+|+.|++++|.+..
T Consensus 20 ~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 20 NQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp SSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcccCccCCC----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence 467788887553 55789999999999963 34689999999999999999877 58899999999999999998
Q ss_pred cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 78 GLNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 78 ~~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+++. +..++.|++|++++|.++++
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeE
Confidence 6655 78999999999999999876
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.5e-14 Score=99.17 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
.+..+|+.++.+ +.|+.|++++|.++.+|..+..+.+|+.|++++|.++.+| .+..+.+|++|++++|.+..++..+
T Consensus 235 ~l~~l~~~~~~l--~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 235 QIFNISANIFKY--DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp CCSCCCGGGGGC--CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST
T ss_pred CCCCCChhhcCC--CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh
Confidence 444555555544 5666666666666666655566666666666666666555 4555566666666666665544445
Q ss_pred CCCCCCcEEEcCCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~ 100 (111)
+.++.|+.|++++|.+++
T Consensus 313 ~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TSCTTCCCEECTTSCCCS
T ss_pred hcCCCccEEeCCCCccCC
Confidence 566666666666666553
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=2.9e-13 Score=84.86 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+.+..+|..+..+ +.+++|++++|+++.++ ..+..+.+|+.+++++|.++.++ .+..+++|+.|++++|++..++
T Consensus 87 N~l~~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 87 NQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SCCSSCCCCTTTC--TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CcCCcCchhhccC--CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 3444555544444 56666666666666643 34566666666666666666655 3555666666666666666544
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. +..++.|+.|++++|.++.+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCC
T ss_pred HHHhcCcCCCCEEECCCCcCCcc
Confidence 43 34566666666666666654
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=1.4e-13 Score=86.24 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=68.2
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLC 94 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~ 94 (111)
+.+++|++++|.++.+|..+..+++|+.+++++|.++.++ .|..+.+|+.|++++|.+..+++. +..+++|+.|+++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 6777888888888877777777888888888888888876 577888888888888888876554 5678888888988
Q ss_pred CCCCCCCc
Q psy8464 95 GNRIKDLE 102 (111)
Q Consensus 95 ~n~l~~~~ 102 (111)
+|.++.++
T Consensus 157 ~N~l~~l~ 164 (290)
T 1p9a_G 157 NNNLTELP 164 (290)
T ss_dssp TSCCSCCC
T ss_pred CCcCCccC
Confidence 88888764
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=4.9e-13 Score=82.95 Aligned_cols=96 Identities=26% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCCCCCCcc-cccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 4 NLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 4 ~l~~~p~~~-~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.+..+++.. ..+ +.+++|++++|.++.++. .+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+...+
T Consensus 96 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 96 QLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCccChhHhcCC--cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 444444433 222 566666666666666333 3456666666666666666655 2456666666666666666544
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. ++.+++|++|++++|.++++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCC
T ss_pred HHHhcCCccCCEEECCCCcCCcc
Confidence 33 45666666666666666654
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=4.9e-13 Score=79.89 Aligned_cols=96 Identities=25% Similarity=0.244 Sum_probs=81.2
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+.+.++|..+. +.+++|++++|.++.++. .+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+..++
T Consensus 17 ~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 17 QGRTSVPTGIP----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCCCCCCC----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 45667775432 689999999999999655 4688999999999999999887 4788999999999999999866
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCCc
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~~ 102 (111)
+. ++.++.|+++++++|.++++.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccC
Confidence 55 678999999999999998764
No 25
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=2e-13 Score=84.55 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=81.3
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV 81 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~ 81 (111)
++.+..+|+ +..+ +.++.|++++|.++.++.... ..|+.+++++|.++.++.+..+++|+.|++++|.+..+ +.
T Consensus 72 ~N~i~~~~~-l~~l--~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~ 145 (263)
T 1xeu_A 72 HNQISDLSP-LKDL--TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VM 145 (263)
T ss_dssp SSCCCCCGG-GTTC--SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-GG
T ss_pred CCccCCChh-hccC--CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-hH
Confidence 345666766 5555 889999999999998776533 88999999999998887778888999999999998874 56
Q ss_pred cCCCCCCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIKDLETLEPLFGS 110 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~~~~~~~~l~~l 110 (111)
++.++.|+.|++++|.++++..+..+++|
T Consensus 146 l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred HccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 77888999999999988877555555444
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=3.9e-13 Score=84.83 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ 83 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~ 83 (111)
.+..+| .+..+ +.++.|++++|.+..++. +..+++|+.+++++|.++.++.+..+++|+.|++++|.+..+ +.+.
T Consensus 52 ~i~~l~-~~~~l--~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~ 126 (308)
T 1h6u_A 52 GVTTIE-GVQYL--NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLA 126 (308)
T ss_dssp CCCCCT-TGGGC--TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GGGT
T ss_pred CccCch-hhhcc--CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-hhhc
Confidence 445554 34444 677777777777777655 667777777777777777666566666677777776666652 3355
Q ss_pred CCCCCcEEEcCCCCCCCCcCC
Q psy8464 84 SSPKLAYLNLCGNRIKDLETL 104 (111)
Q Consensus 84 ~~~~L~~l~l~~n~l~~~~~~ 104 (111)
.++.|+.|++++|.++++..+
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~l 147 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNISPL 147 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCEEECCCCccCcCccc
Confidence 566666666666666554433
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.8e-14 Score=82.04 Aligned_cols=93 Identities=26% Similarity=0.266 Sum_probs=60.4
Q ss_pred CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc--ccc
Q psy8464 7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL--NVL 82 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~--~~~ 82 (111)
.+|+.+..+ +.++.|++++|.++.+ ..+..+++|+.+++++|.++. +| .+..+++|++|++++|.+...+ ..+
T Consensus 33 ~~~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 33 KLEGLTDEF--EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp BCCSCCTTC--TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred HHHHHHhhc--CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 455444444 6677777777777766 445666777777777777766 44 3334667777777777776632 346
Q ss_pred CCCCCCcEEEcCCCCCCCCc
Q psy8464 83 QSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~~ 102 (111)
+.++.|+++++++|.++++.
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp GGCTTCCEEECTTCGGGGST
T ss_pred hhCCCCCEEeCcCCcccchH
Confidence 66777777777777776554
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4.1e-14 Score=82.04 Aligned_cols=92 Identities=24% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCcc--ccc
Q psy8464 7 FFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGL--NVL 82 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~--~~~ 82 (111)
.+|..+..+ +.++.|++++|.++.+ ..+..+++|+.+++++|.++. ++ .+..+++|++|++++|.+..++ +.+
T Consensus 40 ~i~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 40 KIEGLTAEF--VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp BCSSCCGGG--GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred hHHHHHHhC--CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 444443333 5566666666665555 444555566666666666555 33 2223556666666666665533 335
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~ 101 (111)
..++.|+++++++|.++++
T Consensus 117 ~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SSCSCCCEEECCSSGGGTS
T ss_pred hcCCCCCEEEeeCCcCcch
Confidence 5566666666666665554
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=9e-14 Score=94.04 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCCCCCCCccc-ccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEPDTE-RMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~~~~-~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++++.+|+..+ .+ +++++|++++|.|+.++ +.|..+.+|+.|++++|.++.++ .|.++.+|++|++++|.+..+
T Consensus 62 N~i~~l~~~~f~~l--~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 62 NPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp SCCCEECTTTTTTC--TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred CCCCCCCHHHHhCC--CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 55667776433 34 78899999999998854 45688889999999999888877 478888899999998888876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. ++.+++|++|++++|.++.+
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCC
T ss_pred ChhhhhcCcccCeeccccCccccC
Confidence 544 77888888888888887654
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=9e-13 Score=81.66 Aligned_cols=84 Identities=26% Similarity=0.332 Sum_probs=39.3
Q ss_pred CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.++ ..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++. +..++.|+++++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 34444444444444422 22344444444444444444444 244455555555555555443332 444555555555
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++.+
T Consensus 189 ~~N~l~~~ 196 (270)
T 2o6q_A 189 DNNQLKRV 196 (270)
T ss_dssp CSSCCSCC
T ss_pred CCCcCCcC
Confidence 55555443
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=9.4e-13 Score=81.57 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=43.2
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.+++|++++|.++.++. .+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+++. ++.++.|+.|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 444555555555544322 2344455555555555555444 244555555666665555553333 445566666666
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++.+
T Consensus 165 ~~n~l~~~ 172 (270)
T 2o6q_A 165 YNNQLKRV 172 (270)
T ss_dssp CSSCCSCC
T ss_pred cCCcCcEe
Confidence 66665544
No 32
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=6.9e-13 Score=77.49 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=81.9
Q ss_pred CCCCCCCCCcc-cccCcCCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 2 NSNLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~-~~~~~~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
++.+..+|+.. ..+ +.+++|++++|.++.++.. +..+.+|+.+++++|.++.++ .+..+++|+++++++|.+..
T Consensus 37 ~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 37 SNKLQSLPHGVFDKL--TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp SSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccEeCHHHhcCc--ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence 35577777764 344 8999999999999996654 588999999999999999987 47889999999999999998
Q ss_pred cccc-cCCCCCCcEEEcCCCCCCC
Q psy8464 78 GLNV-LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 78 ~~~~-~~~~~~L~~l~l~~n~l~~ 100 (111)
+++. +..++.|+++++++|.+..
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 115 VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eCHHHhcCCcccCEEEecCCCeec
Confidence 6655 5688999999999999875
No 33
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=4.4e-13 Score=84.03 Aligned_cols=82 Identities=29% Similarity=0.377 Sum_probs=47.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.|++++|.++.++. +..+++|+.+++++|.++.++.+..+++|+.|++++|.+.. .+.+..++.|+.|++++|.
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc
Confidence 566666666666666544 55666666666666666655555555555556655555554 2334445555555555555
Q ss_pred CCCC
Q psy8464 98 IKDL 101 (111)
Q Consensus 98 l~~~ 101 (111)
++++
T Consensus 146 l~~~ 149 (291)
T 1h6t_A 146 ITDI 149 (291)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5444
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=3.5e-13 Score=86.26 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=77.4
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+++++++|..+. +.++.|++++|.++.++. .+..+++|+.+++++|.++.++ .+..+++|++|++++|.+..+
T Consensus 40 ~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 456777876543 578899999999888555 6688888999999999888765 577888899999999888876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCCcC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDLET 103 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~~~ 103 (111)
++. ++.+++|+++++++|.++.++.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred CHhHhCCCccCCEEECCCCCCcccCc
Confidence 555 7788888999998888877644
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.2e-12 Score=81.28 Aligned_cols=84 Identities=26% Similarity=0.320 Sum_probs=50.2
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.+++|++++|.++.++. .+..+++|+.+++++|.++.++ .+..+++|++|++++|.+...++. ++.++.|+.|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 556666666666666333 2355666666666666666555 255566666666666666654433 456666666666
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++++
T Consensus 165 ~~n~l~~~ 172 (272)
T 3rfs_A 165 SYNQLQSL 172 (272)
T ss_dssp CSSCCCCC
T ss_pred CCCCcCcc
Confidence 66666654
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=4.5e-13 Score=83.98 Aligned_cols=90 Identities=30% Similarity=0.334 Sum_probs=45.4
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.|++++|.++.++ .+..+++|+.+++++|.++.++.+..+++|+.|++++|.+....+ +..++.|+.|++++|.
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence 34444444444444432 223444455555555554444444445555566666665555332 5555666666666666
Q ss_pred CCCCcCCCCCCC
Q psy8464 98 IKDLETLEPLFG 109 (111)
Q Consensus 98 l~~~~~~~~l~~ 109 (111)
+++++.+..+++
T Consensus 190 i~~l~~l~~l~~ 201 (291)
T 1h6t_A 190 ISDLRALAGLKN 201 (291)
T ss_dssp CCBCGGGTTCTT
T ss_pred CCCChhhccCCC
Confidence 665544444433
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=7.2e-13 Score=78.68 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=49.2
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC--CCCCCCCCCCCEEEcCCCcCCCc-cc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LKGFPELPALTRLELSDNRISGG-LN 80 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~--l~~~~~l~~L~~l~l~~n~~~~~-~~ 80 (111)
.+..+| .+..+ ++++.|++++|.++.++ .+..+++|+.+++++|.++. ...+..+++|++|++++|.+... +.
T Consensus 55 ~i~~l~-~l~~l--~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 55 NVTDLT-GIEYA--HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp CCSCCT-TGGGC--TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred CccChH-HHhcC--CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence 344444 34444 55666666666555544 33455666666666666554 22455555555555555555532 22
Q ss_pred ccCCCCCCcEEEcCCCC-CCCCc
Q psy8464 81 VLQSSPKLAYLNLCGNR-IKDLE 102 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~n~-l~~~~ 102 (111)
.++.++.|++|++++|. +..++
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCG
T ss_pred HHhhCCCCCEEEccCCCCccccH
Confidence 24455555555555554 44443
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.47 E-value=2.4e-13 Score=86.52 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=36.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCC-CCC-CCC---------CCCCCCEEEcCCCcCCCcccccCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLT-SLK-GFP---------ELPALTRLELSDNRISGGLNVLQSSP 86 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~---------~l~~L~~l~l~~n~~~~~~~~~~~~~ 86 (111)
+.+++|++++|.++.+|..+..+.+|+.+++++|... .+| .+. .+++|++|++++|.+..++..++.++
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 206 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC
Confidence 4444444444444444444444444444444443221 122 111 13444444444444443333344445
Q ss_pred CCcEEEcCCCCCCCC
Q psy8464 87 KLAYLNLCGNRIKDL 101 (111)
Q Consensus 87 ~L~~l~l~~n~l~~~ 101 (111)
.|++|++++|.++++
T Consensus 207 ~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 207 NLKSLKIRNSPLSAL 221 (328)
T ss_dssp TCCEEEEESSCCCCC
T ss_pred CCCEEEccCCCCCcC
Confidence 555555555554443
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=4.4e-13 Score=86.23 Aligned_cols=84 Identities=25% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.++ ..+..+.+|+.|++++|.++.++ .|..+.+|+.|++++|.+..+.+ .+..++.|+.|++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 44555555555555532 23455555555555555555544 34555555555555555554322 2455566666666
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++.+
T Consensus 144 ~~N~l~~l 151 (361)
T 2xot_A 144 SQNQISRF 151 (361)
T ss_dssp CSSCCCSC
T ss_pred CCCcCCee
Confidence 66665554
No 40
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2.3e-13 Score=94.38 Aligned_cols=93 Identities=27% Similarity=0.264 Sum_probs=82.4
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
..++.|++++|.+..+|..+..+.+|+.|++++|.++.+| .+..+.+|++|++++|.+..++..++.++.|++|++++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence 7899999999999998888889999999999999999988 688899999999999999987666889999999999999
Q ss_pred CCCCCc-CCCCCCCC
Q psy8464 97 RIKDLE-TLEPLFGS 110 (111)
Q Consensus 97 ~l~~~~-~~~~l~~l 110 (111)
.++.++ .+..+++|
T Consensus 304 ~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 304 MVTTLPWEFGNLCNL 318 (727)
T ss_dssp CCCCCCSSTTSCTTC
T ss_pred CCCccChhhhcCCCc
Confidence 998774 35555444
No 41
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=4.4e-13 Score=85.56 Aligned_cols=94 Identities=23% Similarity=0.241 Sum_probs=80.7
Q ss_pred CCCCCCCcccccCcCCccEEEcCC-CCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDN-CRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~-n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+|..+|+ +... ++++.|++++ |.++.++ ..+..+.+|+.|++++|.++.++ .|..+++|+.|++++|.+..++
T Consensus 20 ~l~~ip~-l~~~--~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGA--ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTTTTT-SCSC--SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCccCC-CCCC--CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 6889998 7766 8899999996 9999955 56799999999999999999876 5788999999999999999876
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. +..++ |+.|++.+|.+...
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp STTTCSCC-CCEEECCSSCCCCC
T ss_pred HHHcccCC-ceEEEeeCCCccCC
Confidence 65 44444 99999999998754
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=1.2e-12 Score=82.67 Aligned_cols=93 Identities=23% Similarity=0.352 Sum_probs=48.0
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ 83 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~ 83 (111)
.+..+++ +..+ +.++.|++++|.++.++ .+..+.+|+.+++++|.++.++.+..+++|+.|++++|.+... +.++
T Consensus 74 ~i~~~~~-~~~l--~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~ 148 (308)
T 1h6u_A 74 QITDLAP-LKNL--TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLA 148 (308)
T ss_dssp CCCCCGG-GTTC--CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGG
T ss_pred cCCCChh-HccC--CCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-cccc
Confidence 3444444 3333 55666666666666554 2455556666666666655554444555555555555555442 2244
Q ss_pred CCCCCcEEEcCCCCCCCC
Q psy8464 84 SSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 84 ~~~~L~~l~l~~n~l~~~ 101 (111)
.++.|+.|++++|.++++
T Consensus 149 ~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp GCTTCCEEECCSSCCCCC
T ss_pred CCCCccEEEccCCcCCCC
Confidence 444455555555444443
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.5e-12 Score=88.77 Aligned_cols=102 Identities=26% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
+.+..+| .+..+ +.|+.|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.+.. ++.+
T Consensus 53 n~i~~l~-~l~~l--~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l 127 (605)
T 1m9s_A 53 SDIKSVQ-GIQYL--PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-INGL 127 (605)
T ss_dssp CCCCCCT-TGGGC--TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-CGGG
T ss_pred CCCCCCh-HHccC--CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-Cccc
Confidence 3455554 35555 788888888888888665 67888888888888888877777777788888888887776 4456
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDLETLEPLFG 109 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~~~~~~l~~ 109 (111)
..++.|+.|++++|.++++..+..+.+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 154 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDITVLSRLTK 154 (605)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGSCTT
T ss_pred cCCCccCEEECCCCccCCchhhcccCC
Confidence 667777777777777766544444333
No 44
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.3e-13 Score=80.56 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=45.3
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-C-CCCCCCCCEEEcCCCcCCCccc--ccCCCCCCcEEEcC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-G-FPELPALTRLELSDNRISGGLN--VLQSSPKLAYLNLC 94 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~-~~~l~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~ 94 (111)
.++.|++++|.++.+ ..+..+++|+.+++++|.++.++ . +..+++|++|++++|.+..+++ .++.++.|+.++++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 556666666665555 33455555666666666655554 2 2445566666666666554333 34455566666666
Q ss_pred CCCCCCC
Q psy8464 95 GNRIKDL 101 (111)
Q Consensus 95 ~n~l~~~ 101 (111)
+|.+..+
T Consensus 122 ~N~i~~~ 128 (176)
T 1a9n_A 122 RNPVTNK 128 (176)
T ss_dssp SSGGGGS
T ss_pred CCCCCCc
Confidence 6655443
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=1e-12 Score=86.61 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
..+.++|..++ +.++.|++++|.++. .+..+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+..++
T Consensus 64 ~~l~~iP~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 64 RGLSEVPQGIP----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SCCSSCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCcCccCCCCC----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 45677776543 678888999988888 4666788888888888888888765 5777888888888888888755
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. ++.+++|++|++++|.+..+
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESI 162 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEE
T ss_pred hhhhcccCCCCEEECCCCCccee
Confidence 54 66788888888888887755
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=1.6e-12 Score=80.68 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.++.++|..++ +.+++|++++|.++.++. .+..+++|+.+++++|.++.++ .+..+++|++|++++|.+....
T Consensus 17 ~~l~~ip~~l~----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 17 LNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSCCSSSC----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCCCCC----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 34555655432 345666666666665333 4455566666666666555544 3455555555555555554433
Q ss_pred cc-cCCCCCCcEEEcCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~ 100 (111)
+. +..++.|+++++++|.+.+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC
T ss_pred hhhhcCCccccEEECCCCCccc
Confidence 22 4444455555555544443
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1.5e-12 Score=82.90 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-c
Q psy8464 5 LPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-V 81 (111)
Q Consensus 5 l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~ 81 (111)
+..+|+.+..+ +.++.|++++|.++.+|..+..+++|+.+++++|.+.. +| .+..+++|+.|++++|.+....+ .
T Consensus 195 l~~lp~~l~~l--~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 195 IRSLPASIANL--QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CCCCCGGGGGC--TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred cCcchHhhcCC--CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 44555554444 56666666666666655556666666666666655443 33 45566666667666665543333 3
Q ss_pred cCCCCCCcEEEcCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~ 99 (111)
++.++.|+.|++++|.+.
T Consensus 273 ~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp GGGCTTCCEEECTTCTTC
T ss_pred hhcCCCCCEEeCCCCCch
Confidence 556666777777766543
No 48
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.8e-13 Score=77.08 Aligned_cols=86 Identities=56% Similarity=0.854 Sum_probs=75.8
Q ss_pred CcCCccEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464 16 GKIQIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN 92 (111)
Q Consensus 16 ~~~~l~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~ 92 (111)
.++.++.+++++|.++ .+|..+..+++++.+++++|.++.++.+..+++|+.|++++|.+....+. ++.++.|++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3378999999999999 58888889999999999999999887788899999999999999874444 55789999999
Q ss_pred cCCCCCCCC
Q psy8464 93 LCGNRIKDL 101 (111)
Q Consensus 93 l~~n~l~~~ 101 (111)
+++|.++++
T Consensus 95 ls~N~i~~~ 103 (149)
T 2je0_A 95 LSGNKIKDL 103 (149)
T ss_dssp CTTSCCCSH
T ss_pred CCCCcCCCh
Confidence 999999875
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.7e-13 Score=78.60 Aligned_cols=87 Identities=52% Similarity=0.866 Sum_probs=76.6
Q ss_pred CcCCccEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464 16 GKIQIKELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN 92 (111)
Q Consensus 16 ~~~~l~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~ 92 (111)
.++.++.|++++|.++ .+|..+..+++|+.+++++|.++.+..+..+++|+.|++++|.+...++. +..++.|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3378999999999999 58888889999999999999999887788899999999999999874444 55699999999
Q ss_pred cCCCCCCCCc
Q psy8464 93 LCGNRIKDLE 102 (111)
Q Consensus 93 l~~n~l~~~~ 102 (111)
+++|.+++++
T Consensus 102 Ls~N~l~~~~ 111 (168)
T 2ell_A 102 LSGNKLKDIS 111 (168)
T ss_dssp CBSSSCCSSG
T ss_pred ccCCccCcch
Confidence 9999998864
No 50
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=3.8e-13 Score=78.63 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=75.7
Q ss_pred CcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcC
Q psy8464 16 GKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLC 94 (111)
Q Consensus 16 ~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~ 94 (111)
.+..++.|++++|.++.++......++|+.+++++|.++.++.+..+++|+.|++++|.+..+++. ++.++.|++++++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 347899999999999998665444459999999999999888888999999999999999986655 4789999999999
Q ss_pred CCCCCCCcC
Q psy8464 95 GNRIKDLET 103 (111)
Q Consensus 95 ~n~l~~~~~ 103 (111)
+|.+..++.
T Consensus 97 ~N~i~~~~~ 105 (176)
T 1a9n_A 97 NNSLVELGD 105 (176)
T ss_dssp SCCCCCGGG
T ss_pred CCcCCcchh
Confidence 999987754
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=1.8e-12 Score=87.84 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=44.1
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.++.++|..++ +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++ .|..+.+|++|++++|.+....
T Consensus 21 ~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 21 QKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp SCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CCcccCCCCCC----CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 34556665432 3455555555555552 223445555555555555554432 3444455555555555544432
Q ss_pred c-ccCCCCCCcEEEcCCCCCC
Q psy8464 80 N-VLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 80 ~-~~~~~~~L~~l~l~~n~l~ 99 (111)
+ .++.+++|++|++++|.+.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCC
T ss_pred hhhcCCcccCCEEEccCCccc
Confidence 2 2444444444444444443
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=6.1e-13 Score=79.02 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=75.9
Q ss_pred cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCc-CCCcccccCCCC
Q psy8464 11 DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNR-ISGGLNVLQSSP 86 (111)
Q Consensus 11 ~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~ 86 (111)
.+..+ +.+++|++++|.++. .+..+..+++|+.+++++|.++.. + .+..+++|++|++++|. +.. .+.+..++
T Consensus 83 ~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~ 159 (197)
T 4ezg_A 83 PISGL--SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLP 159 (197)
T ss_dssp GGTTC--TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCS
T ss_pred hhhcC--CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCC
Confidence 44445 788999999999987 666778888999999999988862 2 57778889999999987 766 44677888
Q ss_pred CCcEEEcCCCCCCCCcCCCCCCCC
Q psy8464 87 KLAYLNLCGNRIKDLETLEPLFGS 110 (111)
Q Consensus 87 ~L~~l~l~~n~l~~~~~~~~l~~l 110 (111)
+|+.+++++|.++++..+..+++|
T Consensus 160 ~L~~L~l~~n~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYRGIEDFPKL 183 (197)
T ss_dssp SCCEEECTTBCCCCCTTGGGCSSC
T ss_pred CCCEEECCCCCCcChHHhccCCCC
Confidence 899999999988877655555544
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=7e-13 Score=85.29 Aligned_cols=96 Identities=24% Similarity=0.245 Sum_probs=64.6
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhhh-hh-cCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAAL-TS-EFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~-~~-~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
+++++.+|..++ ..++.|++++|.++.++.. +. .+.+|+.|++++|.++.++ .|..+++|++|++++|.+..
T Consensus 27 ~~~l~~iP~~~~----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 27 KQQLPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp SSCCSSCCSSCC----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCccCccCC----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 345666665432 4467777777777774443 34 6777777777777777765 46677777777777777776
Q ss_pred cccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 78 GLNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 78 ~~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+++. +..++.|+.|++++|.+..+
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCHHHhCCCcCCCEEECCCCcccEE
Confidence 5443 56777777777777777654
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.43 E-value=1.4e-12 Score=87.39 Aligned_cols=96 Identities=25% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++.++++|+.++ +.++.|++++|.++. .+..+..+++|+.+++++|.++.++ .+..+.+|++|++++|.+...
T Consensus 14 ~~~l~~ip~~~~----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 14 SRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TSCCSSCCSCCC----TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCccccccccCC----CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 356788887643 678999999999988 4567788899999999999988765 588888999999999998876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. ++.+++|++|++++|.++++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSS
T ss_pred CHHHhccCCCCcEEECCCCccccc
Confidence 655 78888999999999988754
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.2e-12 Score=87.99 Aligned_cols=91 Identities=30% Similarity=0.341 Sum_probs=58.1
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+....+ +..++.|+.|++++|.
T Consensus 109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 556666666666666543 45666666666666666666555666677777777777766434 6667777777777777
Q ss_pred CCCCcCCCCCCCC
Q psy8464 98 IKDLETLEPLFGS 110 (111)
Q Consensus 98 l~~~~~~~~l~~l 110 (111)
+++++.+..+++|
T Consensus 187 i~~l~~l~~l~~L 199 (605)
T 1m9s_A 187 ISDLRALAGLKNL 199 (605)
T ss_dssp CCBCGGGTTCTTC
T ss_pred CCCChHHccCCCC
Confidence 7666555444443
No 56
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=2.5e-12 Score=74.91 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=75.3
Q ss_pred ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN 96 (111)
Q Consensus 20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 96 (111)
.+.+++++|.++.+|..+ ...++.+++++|.++.++ .+..+.+|++|++++|++..+++. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 568999999999988765 378999999999999985 588999999999999999987665 678999999999999
Q ss_pred CCCCCcC--CCCCCCC
Q psy8464 97 RIKDLET--LEPLFGS 110 (111)
Q Consensus 97 ~l~~~~~--~~~l~~l 110 (111)
.++++.. +..+++|
T Consensus 89 ~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp CCCCCCTTTTTTCTTC
T ss_pred ccCEeCHHHhcCCCCC
Confidence 9988743 4444444
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=3.9e-12 Score=79.20 Aligned_cols=82 Identities=23% Similarity=0.197 Sum_probs=34.7
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEeccccc-CCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEE
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVG-LTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLN 92 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~ 92 (111)
+.+++|++++|.++.+ +..+..+++|+.+++++|. +..++ .+..+++|++|++++|.+....+. +..++.|++++
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 3444444444444442 3333444444444444443 33332 233444444444444444432221 33344444444
Q ss_pred cCCCCCC
Q psy8464 93 LCGNRIK 99 (111)
Q Consensus 93 l~~n~l~ 99 (111)
+++|.++
T Consensus 136 l~~n~l~ 142 (285)
T 1ozn_A 136 LQDNALQ 142 (285)
T ss_dssp CCSSCCC
T ss_pred CCCCccc
Confidence 4444443
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.42 E-value=1.9e-12 Score=87.23 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=61.8
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+++..+|..++ +.++.|++++|.++.++ ..+..+++|+.+++++|.++.++ .+..+++|++|++++|.+..++
T Consensus 41 ~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 41 RNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp SCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence 45666766432 56777777777777743 45677777777777777777653 4666777777777777776543
Q ss_pred cccCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
.. .+++|++|++++|.++++
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVL 136 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBC
T ss_pred cc--ccccCCEEECCCCCcccc
Confidence 33 566677777777766554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=1.7e-12 Score=85.29 Aligned_cols=95 Identities=26% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.++.++|..++ +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++ .|..+.+|++|++++|.+..++
T Consensus 53 ~~l~~iP~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 53 KNLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CCCSSCCSCCC----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCcCcCCCCCC----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC
Confidence 45666776443 4566677777776663 345566666666666666666554 4556666666666666666544
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. +..+++|++|++++|.+..+
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESI 151 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEE
T ss_pred HhHhhccccCceeeCCCCccccc
Confidence 32 55666666666666665543
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=1.6e-12 Score=84.10 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=43.3
Q ss_pred CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.+++|++++|.++.++ ..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+++. ++.+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 45555555555555532 24455555555555555555543 244555555555555555543333 344555555555
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.+.++
T Consensus 149 ~~n~l~~~ 156 (390)
T 3o6n_A 149 SNNNLERI 156 (390)
T ss_dssp CSSCCCBC
T ss_pred CCCccCcc
Confidence 55555443
No 61
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=3.5e-12 Score=74.58 Aligned_cols=89 Identities=22% Similarity=0.245 Sum_probs=75.0
Q ss_pred ccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN 96 (111)
Q Consensus 20 l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 96 (111)
-+.++++++.+..+|..+. ..++.+++++|.++.++ .+..+.+|+.|++++|++..+++. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999887653 78999999999999985 688999999999999999987665 578999999999999
Q ss_pred CCCCCcC--CCCCCCC
Q psy8464 97 RIKDLET--LEPLFGS 110 (111)
Q Consensus 97 ~l~~~~~--~~~l~~l 110 (111)
.++.+.. +..+++|
T Consensus 92 ~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp CCCCCCTTTTTTCTTC
T ss_pred ccceeCHHHhccccCC
Confidence 9988743 4444443
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.6e-12 Score=86.73 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~~ 78 (111)
++++.++|+.++ +.++.|++++|.++. .+..+..+.+|+.+++++|.++.+ | .+..+++|++|++++|.+..+
T Consensus 9 ~n~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 9 KNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp TSCCSSCCCSCC----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccccccc----ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence 356667776543 567777777777777 345667777777777777777765 2 566677777777777777653
Q ss_pred ccccCCCCCCcEEEcCCCCCCC
Q psy8464 79 LNVLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 79 ~~~~~~~~~L~~l~l~~n~l~~ 100 (111)
+.. .++.|++|++++|.+++
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSS
T ss_pred Ccc--ccCCccEEeccCCcccc
Confidence 333 56677777777777665
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.40 E-value=5.1e-12 Score=78.69 Aligned_cols=83 Identities=29% Similarity=0.361 Sum_probs=43.3
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.+++|++++|.+..+ +..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++. +..++.|+.+++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 4555555555555552 333445555555555555555544 244555555555555555543332 445555566666
Q ss_pred CCCCCCC
Q psy8464 94 CGNRIKD 100 (111)
Q Consensus 94 ~~n~l~~ 100 (111)
++|.+++
T Consensus 185 ~~n~l~~ 191 (285)
T 1ozn_A 185 HQNRVAH 191 (285)
T ss_dssp CSSCCCE
T ss_pred CCCcccc
Confidence 6555544
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=3.4e-12 Score=85.77 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.++.++|..+. +.++.|++++|.++.+ +..+..+++|+.+++++|.++.++ .+..+++|++|++++|.+...+
T Consensus 17 ~~l~~ip~~l~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 17 LNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SCCSSCCSSSC----SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCCCcc----ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 35666665432 4466666666666663 334455666666666666655543 3555555666666655555433
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q psy8464 80 N-VLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~-~~~~~~~L~~l~l~~n~l~~~ 101 (111)
+ .++.++.|++|++++|.++.+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCS
T ss_pred HhhhcCccccccccccccccccC
Confidence 2 244555555555555554443
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=3.5e-12 Score=79.07 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=49.7
Q ss_pred CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.+++|++++|.++.++ ..+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+....+ .++.++.|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 56677777777666633 34566666777777766666544 35556666666666666555333 2455556666666
Q ss_pred CCCCCCC
Q psy8464 94 CGNRIKD 100 (111)
Q Consensus 94 ~~n~l~~ 100 (111)
++|.+++
T Consensus 132 ~~n~l~~ 138 (276)
T 2z62_A 132 AHNLIQS 138 (276)
T ss_dssp CSSCCCC
T ss_pred cCCccce
Confidence 6665544
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=3.2e-12 Score=86.60 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
..+.++|..++ ..++.|++++|.++.+ +..+..+.+|+.+++++|.++.+. .|..+.+|++|++++|.+....
T Consensus 22 ~~l~~iP~~l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 22 LGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp SCCSSCCTTSC----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CCcccCcCCCC----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC
Confidence 34555665432 3455566666665553 444555555555555555555432 3455555555555555554432
Q ss_pred c-ccCCCCCCcEEEcCCCCCCC
Q psy8464 80 N-VLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 80 ~-~~~~~~~L~~l~l~~n~l~~ 100 (111)
+ .++.++.|++|++++|.+++
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSC
T ss_pred hhhhcccccccEeeccccCccc
Confidence 2 24444455555555544443
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=1e-11 Score=85.14 Aligned_cols=84 Identities=24% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++. .|..+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+..+++. ++.+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 566777777777766 4555667777777777777777766 377777888888888877765433 667777888888
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.+++.
T Consensus 129 s~n~l~~~ 136 (680)
T 1ziw_A 129 SHNGLSST 136 (680)
T ss_dssp CSSCCSCC
T ss_pred CCCccccc
Confidence 87777654
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.39 E-value=2.4e-12 Score=84.56 Aligned_cols=84 Identities=25% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.+.. .+..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+....+ .+..++.|+++++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 556666666666666 3445556666666666666665543 35556666666666666655433 2556666666666
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.++++
T Consensus 379 ~~N~l~~~ 386 (455)
T 3v47_A 379 DTNQLKSV 386 (455)
T ss_dssp CSSCCSCC
T ss_pred CCCccccC
Confidence 66666554
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=2.3e-12 Score=87.59 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.+ +..+..+.+|+.|++++|.++.++ .+..+++|++|++++|.+..+++. ++.++.|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 4555555555555552 224455555555555555555544 244555555555555555543333 344555555555
Q ss_pred CCCCCCCC
Q psy8464 94 CGNRIKDL 101 (111)
Q Consensus 94 ~~n~l~~~ 101 (111)
++|.+.++
T Consensus 155 s~N~l~~~ 162 (597)
T 3oja_B 155 SNNNLERI 162 (597)
T ss_dssp CSSCCCBC
T ss_pred eCCcCCCC
Confidence 55554443
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=4.8e-12 Score=83.39 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=40.2
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
+.++.|++++|.++. .+..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 667777777777777 3355566777777777777776665 35566667777776666654
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=4.7e-12 Score=83.77 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.++..+|..++ +.++.|++++|.++.+ +..+..+++|+.+++++|.++.+. .+..+++|++|++++|.+..++
T Consensus 21 ~~l~~ip~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 21 KRFVAVPEGIP----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CCCSSCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCcCcCCCCCC----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 45666665432 4456666666666663 344555666666666666555542 4555555555555555555433
Q ss_pred cc-cCCCCCCcEEEcCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~ 99 (111)
+. ++.++.|++|++++|.+.
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCC
T ss_pred cccccCCCCCCEEECCCCccc
Confidence 32 445555555555555544
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.38 E-value=4.2e-12 Score=84.01 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+++..+++. +..+ +.+++|++++|.++. .|..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+...
T Consensus 42 n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 42 NRIKTLNQDEFASF--PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp SCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred CccceECHhHccCC--CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 445555443 3334 789999999999988 4777788899999999999988877 467888888899888888765
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
.+. +..+++|+.|++++|.+..+
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEE
T ss_pred ChhHccccccCCEEECCCCcccee
Confidence 443 66777888888888777654
No 73
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=2.1e-12 Score=87.54 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
..++.|++++|.++.+|. ++.+.+|+.|++++|.++.+| .+..+++|+.|++++|.++.+ +.++.+++|+.|++++|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNN 518 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCC
Confidence 468899999999999987 899999999999999999998 788999999999999999984 58889999999999999
Q ss_pred CCCCC
Q psy8464 97 RIKDL 101 (111)
Q Consensus 97 ~l~~~ 101 (111)
.++++
T Consensus 519 ~l~~~ 523 (567)
T 1dce_A 519 RLQQS 523 (567)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 99877
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=8.3e-12 Score=82.03 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=39.2
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
+.++.|++++|.++.+ +..+..+.+|+.|++++|.++.++ .+..+++|+.|++++|.+..
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 6677777777777763 345566677777777777766655 35566666666666666554
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=9.4e-12 Score=80.52 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=78.7
Q ss_pred CCCCCCCCc-ccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEPD-TERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+..+++. +..+ +.+++|++++|.+..+ +..+..+++|+.+++++|.++.++ .+..+++|++|++++|.+...
T Consensus 79 n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 79 LQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp SCCCEECTTTTTTC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CcccccChhhccCC--CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 345555543 3334 7899999999999995 555788999999999999999988 368899999999999999876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
.+. ++.+++|+.|++++|.++.+
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ChhhccCCCCCCEEECCCCcCCcc
Confidence 554 77889999999999998765
No 76
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=6.2e-12 Score=85.21 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+..+++ .+..+ +.+++|++++|.+.. .|..+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+..+
T Consensus 43 n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 43 NVLPTIQNTTFSRL--INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp CCCSEECTTTSTTC--TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CccCcCChhHhccC--ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 44555544 33444 788888888888888 5667788888888888888887753 577788888888888888764
Q ss_pred c-cccCCCCCCcEEEcCCCCCCCC
Q psy8464 79 L-NVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~-~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
. ..++.++.|++|++++|.+.++
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCC
T ss_pred CcchhccCCcccEEECCCCccccc
Confidence 3 3366777888888888877664
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=9.8e-13 Score=80.11 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=57.7
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEeccccc-CCCCC--CCCCCCCCCEEEcCC-CcCCCcccc-cCCCCCCcEE
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVG-LTSLK--GFPELPALTRLELSD-NRISGGLNV-LQSSPKLAYL 91 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~-~~~l~--~~~~l~~L~~l~l~~-n~~~~~~~~-~~~~~~L~~l 91 (111)
+.++.|++++|.++.++. .+..+++|+.+++++|. ++.++ .|..+++|+.|++++ |.+..+++. +..+++|+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777777444 45667777777777775 66655 456667777777776 676654432 5566677777
Q ss_pred EcCCCCCCCCcCCCC
Q psy8464 92 NLCGNRIKDLETLEP 106 (111)
Q Consensus 92 ~l~~n~l~~~~~~~~ 106 (111)
++++|.+++++.+..
T Consensus 111 ~l~~n~l~~lp~~~~ 125 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTK 125 (239)
T ss_dssp EEEEECCCSCCCCTT
T ss_pred eCCCCCCcccccccc
Confidence 777776666544333
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=1.8e-11 Score=77.98 Aligned_cols=88 Identities=25% Similarity=0.304 Sum_probs=56.6
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ 83 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~ 83 (111)
.+..+|. +..+ +.+++|++++|.++.++. +..+++|+.+++++|.++.++.+..+++|++|++++|.+... +.+.
T Consensus 55 ~i~~~~~-~~~~--~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~ 129 (347)
T 4fmz_A 55 KVASIQG-IEYL--TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLA 129 (347)
T ss_dssp CCCCCTT-GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GGGT
T ss_pred ccccchh-hhhc--CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hhhc
Confidence 3444432 4444 677777777777777655 567777777777777777666666667777777777776653 2255
Q ss_pred CCCCCcEEEcCCC
Q psy8464 84 SSPKLAYLNLCGN 96 (111)
Q Consensus 84 ~~~~L~~l~l~~n 96 (111)
.++.|+.+++++|
T Consensus 130 ~l~~L~~L~l~~n 142 (347)
T 4fmz_A 130 NLTKMYSLNLGAN 142 (347)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCceeEEECCCC
Confidence 5566666666665
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=8.6e-12 Score=84.52 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 4 NLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 4 ~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.+..+++ .+..+ +.++.|++++|.++.+ |..+..+.+|+.+++++|.++.+ | .+..+.+|++|++++|.+...+
T Consensus 43 ~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 43 PLKILKSYSFSNF--SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp CCCEECTTTTTTC--TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CcCEeChhhccCC--ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 3444444 23333 6777777777777773 55567777777777777777765 3 5667777777777777776544
Q ss_pred c-ccCCCCCCcEEEcCCCCCCC
Q psy8464 80 N-VLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 80 ~-~~~~~~~L~~l~l~~n~l~~ 100 (111)
+ .++.++.|++|++++|.+.+
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCC
T ss_pred ccccCCCCCCCEEeCCCCcccc
Confidence 2 36667777777777776654
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=1e-11 Score=84.39 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+..+++ .+..+ +.++.|++++|.+..+ +..++.+++|+.|++++|.++.+| .|..+++|++|++++|.+...
T Consensus 85 n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 85 LQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp SCCCEECTTTTTTC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCChHHhcCC--CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 34555555 33334 7899999999999995 445689999999999999999988 368899999999999999876
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
++. ++.++.|++|++++|.++++
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ChhhhhcCCcCcEEECcCCCCCCc
Confidence 654 78899999999999998765
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=7.4e-12 Score=79.40 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcC
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLC 94 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~ 94 (111)
+.++.|++++|.++. .+..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..++..+..++.|++++++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 567777777777777 3556677777777777777777654 4666677777777777777655556677777777777
Q ss_pred CCCCCCC
Q psy8464 95 GNRIKDL 101 (111)
Q Consensus 95 ~n~l~~~ 101 (111)
+|.++++
T Consensus 272 ~N~i~~~ 278 (330)
T 1xku_A 272 NNNISAI 278 (330)
T ss_dssp SSCCCCC
T ss_pred CCcCCcc
Confidence 7777665
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.35 E-value=5.7e-12 Score=80.25 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=51.9
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 96 (111)
+.++++++++|.++.++ .+..+++|+.+++++|.++.++.+..+++|+.|++++|.+....+. ++.++.|+.+++++|
T Consensus 243 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 45555555555555543 2345555666666666555555455556666666666666543322 556677777777777
Q ss_pred CCCCCcCCCCCC
Q psy8464 97 RIKDLETLEPLF 108 (111)
Q Consensus 97 ~l~~~~~~~~l~ 108 (111)
.++++..+..++
T Consensus 322 ~l~~~~~~~~l~ 333 (347)
T 4fmz_A 322 HITDIRPLASLS 333 (347)
T ss_dssp SCCCCGGGGGCT
T ss_pred ccccccChhhhh
Confidence 776654443333
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=4.3e-12 Score=84.59 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhh-cCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc
Q psy8464 3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTS-EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
+.+..+++ .+..+ +.++.|++++|.++. .|..+. .++.|+.+++++|.++.++....+++|+.|++++|.+..++
T Consensus 130 N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 130 NKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp SCCCSGGGBCGGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCCchhhcCC--CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC
Confidence 34444433 33334 788888888888888 555553 68888888888888887775556888999999999988866
Q ss_pred cccCCCCCCcEEEcCCCCCCCCc
Q psy8464 80 NVLQSSPKLAYLNLCGNRIKDLE 102 (111)
Q Consensus 80 ~~~~~~~~L~~l~l~~n~l~~~~ 102 (111)
+.++.++.|+.|++++|.+++++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCEEC
T ss_pred HhHcCCCCccEEEecCCcCcccc
Confidence 67778888999999999888763
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=6.2e-12 Score=79.53 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=66.9
Q ss_pred CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464 18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG 95 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 95 (111)
+.++.|++++|.++. .+..+ ..++.|+.+++++|.++.++....+++|+.|++++|.+..+++.+..++.|+.+++++
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence 778888888888888 34444 4678888888888888877755567888999999998887666677888899999999
Q ss_pred CCCCCC
Q psy8464 96 NRIKDL 101 (111)
Q Consensus 96 n~l~~~ 101 (111)
|.++.+
T Consensus 224 N~l~~l 229 (317)
T 3o53_A 224 NKLVLI 229 (317)
T ss_dssp SCCCEE
T ss_pred Ccccch
Confidence 888765
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=1.7e-11 Score=77.87 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~ 77 (111)
+.++.|++++|.+..+ +..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence 3455555555555552 233445555555555555554432 34444444444444444443
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=1.1e-11 Score=82.00 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
+.+..+|. +..+ +.+++|++++|.++.++. +..+.+|+.+++++|.+..++.+..+++|++|++++|.+... +.+
T Consensus 56 ~~i~~l~~-~~~l--~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 130 (466)
T 1o6v_A 56 LGIKSIDG-VEYL--NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPL 130 (466)
T ss_dssp SCCCCCTT-GGGC--TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGG
T ss_pred CCCccCcc-hhhh--cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hHH
Confidence 34455553 4444 788888888888888666 778888888888888888776677788888888888888774 347
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDLETLEPLF 108 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~~~~~~l~ 108 (111)
+.++.|++|++++|.+.+++.+..++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred cCCCCCCEEECCCCccCCChhhccCC
Confidence 78888888888888877665444433
No 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=3.3e-12 Score=88.95 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.+++ +|..++.+..|+.+++++|.++. +| .+..++.|+.|++++|++...+| .++.++.|+++++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 789999999999998 99999999999999999999984 67 78889999999999999985444 4889999999999
Q ss_pred CCCCCCC
Q psy8464 94 CGNRIKD 100 (111)
Q Consensus 94 ~~n~l~~ 100 (111)
++|.+++
T Consensus 712 s~N~l~g 718 (768)
T 3rgz_A 712 SNNNLSG 718 (768)
T ss_dssp CSSEEEE
T ss_pred cCCcccc
Confidence 9999875
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.33 E-value=1.2e-11 Score=83.37 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCCCCCCCCc-ccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcc
Q psy8464 2 NSNLPFFEPD-TERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 2 ~~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
++.+..+++. +..+ +.+++|++++|.++.+ |+.+..+.+|+.+++++|.++.+|.. .+.+|++|++++|.+..+.
T Consensus 61 ~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 61 QNSISELRMPDISFL--SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp SSCCCCCCGGGTTTC--TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCC
T ss_pred CCCccccChhhhccC--CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccC
Confidence 4567777753 4445 8999999999999994 77789999999999999999998844 7899999999999998743
Q ss_pred --cccCCCCCCcEEEcCCCCCCC
Q psy8464 80 --NVLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 80 --~~~~~~~~L~~l~l~~n~l~~ 100 (111)
..++.+++|++|++++|.++.
T Consensus 138 ~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCGGGGGCTTCCEEEEECSBCCT
T ss_pred chHhhcccCcccEEecCCCcccc
Confidence 458899999999999999875
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=4.3e-11 Score=79.24 Aligned_cols=90 Identities=24% Similarity=0.348 Sum_probs=51.9
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccC
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ 83 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~ 83 (111)
.+..+| ++..+ +.++.|++++|.++.++ ++.+++|+.+++++|.++.++ +..+++|++|++++|.+..+ + ++
T Consensus 53 ~l~~~~-~l~~l--~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l-~-~~ 124 (457)
T 3bz5_A 53 SITDMT-GIEKL--TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL-D-VS 124 (457)
T ss_dssp CCCCCT-TGGGC--TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC-C-CT
T ss_pred CcccCh-hhccc--CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee-c-CC
Confidence 344443 34444 56666666666666654 455566666666666666553 45556666666666666552 2 55
Q ss_pred CCCCCcEEEcCCCCCCCC
Q psy8464 84 SSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 84 ~~~~L~~l~l~~n~l~~~ 101 (111)
.+++|+++++++|.++++
T Consensus 125 ~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp TCTTCCEEECTTSCCSCC
T ss_pred CCCcCCEEECCCCcccee
Confidence 566666666666666554
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.32 E-value=1.3e-11 Score=84.60 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=86.3
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.++.++|.+++ +.++.|++++|.++.++. .+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+
T Consensus 13 ~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 13 HLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp SSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCccccccccC----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 456888887543 689999999999999554 5799999999999999998875 467789999999999999986
Q ss_pred ccc-cCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q psy8464 79 LNV-LQSSPKLAYLNLCGNRIKDLE--TLEPLFGS 110 (111)
Q Consensus 79 ~~~-~~~~~~L~~l~l~~n~l~~~~--~~~~l~~l 110 (111)
++. ++.++.|++|++++|.+.++. .+..+++|
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 654 889999999999999998764 34444443
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=7.5e-12 Score=83.50 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCCCCCCc-ccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCc-
Q psy8464 2 NSNLPFFEPD-TERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG- 78 (111)
Q Consensus 2 ~~~l~~~p~~-~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~- 78 (111)
++.+..+++. +..+ +.+++|++++|.++. .|..+..+.+|+.+++++|.++.+|.. .+.+|++|++++|.+..+
T Consensus 30 ~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSL--SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTC--TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhcccc--ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccccc
Confidence 3456667653 4444 899999999999999 477889999999999999999988854 889999999999999863
Q ss_pred -ccccCCCCCCcEEEcCCCCCCC
Q psy8464 79 -LNVLQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 79 -~~~~~~~~~L~~l~l~~n~l~~ 100 (111)
+..++.+++|++|++++|.+++
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG
T ss_pred chhhhccCCcceEEEecCcccch
Confidence 3458899999999999999865
No 92
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=1e-11 Score=78.00 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEE
Q psy8464 18 IQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLN 92 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~ 92 (111)
+.++.|++++|.+.. .|..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+....+ .+..++.|+.++
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 344444444444443 3444444445555555555544432 34445555555555555554332 244455555555
Q ss_pred cCCCCCCC
Q psy8464 93 LCGNRIKD 100 (111)
Q Consensus 93 l~~n~l~~ 100 (111)
+++|.+.+
T Consensus 230 L~~N~l~~ 237 (306)
T 2z66_A 230 YSLNHIMT 237 (306)
T ss_dssp CTTSCCCB
T ss_pred CCCCCCcc
Confidence 55555544
No 93
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=5.4e-12 Score=80.73 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCCCCCC-cccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc
Q psy8464 3 SNLPFFEP-DTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG 78 (111)
Q Consensus 3 ~~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~ 78 (111)
+.+..+|+ .+... +.++.|++++|.++.+ +..+..+.+|+.+++++|.++.++ .+..+++|++|++++|.+..+
T Consensus 62 n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 139 (353)
T 2z80_A 62 NRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139 (353)
T ss_dssp SCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred CcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence 34555555 23334 6778888888888774 455677778888888888877776 266777788888888877765
Q ss_pred cc--ccCCCCCCcEEEcCCCC-CCC
Q psy8464 79 LN--VLQSSPKLAYLNLCGNR-IKD 100 (111)
Q Consensus 79 ~~--~~~~~~~L~~l~l~~n~-l~~ 100 (111)
+. .+..+++|+++++++|. +..
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CchhhhccCCCCcEEECCCCccccc
Confidence 44 35677777777777773 443
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.31 E-value=2.1e-11 Score=81.96 Aligned_cols=83 Identities=22% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.++.+ ++.+..+.+|+.+++++|.++.++ .+..+.+|++|++++|.+..+.+ .++.++.|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 6677777777777764 344566777777777777766654 46666666667766666665433 2556666666666
Q ss_pred CCCCCCC
Q psy8464 94 CGNRIKD 100 (111)
Q Consensus 94 ~~n~l~~ 100 (111)
++|.+.+
T Consensus 132 ~~n~l~~ 138 (570)
T 2z63_A 132 AHNLIQS 138 (570)
T ss_dssp CSSCCCC
T ss_pred CCCccce
Confidence 6666554
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=2.9e-12 Score=80.98 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=60.1
Q ss_pred CCCCcccccCcCCccEEEcCC-CCCCC-hhhhhhcCCCccEEecccccCC-CCC-CCCCCCCCCEEEcCCCcCCCc-ccc
Q psy8464 7 FFEPDTERMGKIQIKELNLDN-CRSTN-IAALTSEFTNLKILSAINVGLT-SLK-GFPELPALTRLELSDNRISGG-LNV 81 (111)
Q Consensus 7 ~~p~~~~~~~~~~l~~l~l~~-n~i~~-~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~l~~L~~l~l~~n~~~~~-~~~ 81 (111)
.+|+.+..+ +.+++|++++ |.+.. +|..+..+++|+.+++++|.++ .+| .+..+++|++|++++|.+... +..
T Consensus 67 ~~~~~l~~l--~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 67 PIPSSLANL--PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp ECCGGGGGC--TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ccChhHhCC--CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 356666555 6777777774 66665 6666677777777777777776 344 466667777777777776632 334
Q ss_pred cCCCCCCcEEEcCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~ 99 (111)
++.+++|++|++++|.++
T Consensus 145 ~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp GGGCTTCCEEECCSSCCE
T ss_pred HhcCCCCCeEECcCCccc
Confidence 666677777777777665
No 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.30 E-value=2.2e-11 Score=80.00 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCCCCC-cccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 4 NLPFFEP-DTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 4 ~l~~~p~-~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
.+..+++ .+..+ +.++.|++++|.+.. .+..+..+++|+.+++++|.++.++ .+..+++|++|++++|++..++
T Consensus 310 ~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 310 EINKIDDNAFWGL--THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CCCEECTTTTTTC--TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccChhHhcCc--ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 3444433 33334 899999999999998 4677799999999999999998874 6888999999999999999866
Q ss_pred cc-cCCCCCCcEEEcCCCCCCCC
Q psy8464 80 NV-LQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l~~n~l~~~ 101 (111)
+. +..++.|+.+++++|.++.-
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhHhccCCcccEEEccCCCcccC
Confidence 54 67899999999999999754
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.29 E-value=2.8e-12 Score=78.06 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=42.7
Q ss_pred CCccEEEcCCCC-CCChhh-hhhcCCCccEEeccc-ccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCc---
Q psy8464 18 IQIKELNLDNCR-STNIAA-LTSEFTNLKILSAIN-VGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLA--- 89 (111)
Q Consensus 18 ~~l~~l~l~~n~-i~~~~~-~~~~~~~l~~l~l~~-~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~--- 89 (111)
+.++.|++++|. ++.++. .+..+++|+.+++++ |.++.++ .|..+++|+.|++++|.+..++ .++.++.|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~ 133 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFF 133 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-cccccccccccc
Confidence 556666666664 555433 345556666666665 5555544 3445555555555555555422 244444444
Q ss_pred EEEcCCC-CCCC
Q psy8464 90 YLNLCGN-RIKD 100 (111)
Q Consensus 90 ~l~l~~n-~l~~ 100 (111)
.+++++| .++.
T Consensus 134 ~L~l~~N~~l~~ 145 (239)
T 2xwt_C 134 ILEITDNPYMTS 145 (239)
T ss_dssp EEEEESCTTCCE
T ss_pred EEECCCCcchhh
Confidence 5555554 4433
No 98
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=1.8e-12 Score=88.72 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCC------------------hhhhhh--cCCCccEEecccccCCC-CC-CCCC
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTN------------------IAALTS--EFTNLKILSAINVGLTS-LK-GFPE 61 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~------------------~~~~~~--~~~~l~~l~l~~~~~~~-l~-~~~~ 61 (111)
++..+|+.+..+ +.+++|++++|.++. +|..++ .+.+|+.+++++|.+.. +| .+..
T Consensus 194 ~l~~ip~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITFVSKAVMRL--TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEEECGGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCccCCHHHhcc--cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 344466666666 778888888888887 777766 78888888888877554 45 5667
Q ss_pred CCCCCEEEcCCCc-CCC--cccccCCC------CCCcEEEcCCCCCCCCcC
Q psy8464 62 LPALTRLELSDNR-ISG--GLNVLQSS------PKLAYLNLCGNRIKDLET 103 (111)
Q Consensus 62 l~~L~~l~l~~n~-~~~--~~~~~~~~------~~L~~l~l~~n~l~~~~~ 103 (111)
+++|++|++++|. +.. ++..++.+ +.|++|++++|.++.++.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 7777777777776 653 23334433 667777777777665543
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=4.7e-11 Score=78.97 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.|++++|.+..++. +..+++|+.+++++|.++..+.+..+++|+.|++++|.+.. .+.++.++.|+.+++++|.
T Consensus 287 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCc
Confidence 334444444444444322 23344444444444444433323334444444444444443 2334444555555555555
Q ss_pred CCCC
Q psy8464 98 IKDL 101 (111)
Q Consensus 98 l~~~ 101 (111)
++++
T Consensus 365 l~~~ 368 (466)
T 1o6v_A 365 ISDL 368 (466)
T ss_dssp CCBC
T ss_pred cCcc
Confidence 4443
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.28 E-value=8.1e-12 Score=79.31 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=37.3
Q ss_pred CccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCC
Q psy8464 19 QIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG 95 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 95 (111)
.++.|++++|.++.++ ..+..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..++..+..++.|+.+++++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence 4444455555444422 33344444555555555444433 23444444455555444444333344444444444444
Q ss_pred CCCCC
Q psy8464 96 NRIKD 100 (111)
Q Consensus 96 n~l~~ 100 (111)
|.++.
T Consensus 274 N~l~~ 278 (332)
T 2ft3_A 274 NNITK 278 (332)
T ss_dssp SCCCB
T ss_pred CCCCc
Confidence 44443
No 101
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=7.4e-11 Score=74.81 Aligned_cols=60 Identities=30% Similarity=0.363 Sum_probs=37.7
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCC-C-CCCCCCCCCEEEcCCCcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSL-K-GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~l~l~~n~~~~ 77 (111)
+.++.|++++|.++.++. .+..+++|+.+++++|.++.+ + .+..+++|++|++++|.+..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc
Confidence 456666777776666433 456666677777766666665 3 45566666666666666554
No 102
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=1.5e-11 Score=77.16 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=35.9
Q ss_pred CCccEEEcCCCCCCCh---hhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCccc--ccCCCCCCcEE
Q psy8464 18 IQIKELNLDNCRSTNI---AALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLN--VLQSSPKLAYL 91 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~---~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l 91 (111)
+.++.|++++|.++.. +..+..+.+|+.+++++|.+..++ .+..+++|++|++++|.+....+ .+..++.|+++
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 4455555555555432 233333444444444444443333 23344445555555554443222 23344444444
Q ss_pred EcCCCCC
Q psy8464 92 NLCGNRI 98 (111)
Q Consensus 92 ~l~~n~l 98 (111)
++++|.+
T Consensus 132 ~l~~n~l 138 (306)
T 2z66_A 132 DISHTHT 138 (306)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 4444444
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.27 E-value=2.9e-11 Score=85.04 Aligned_cols=93 Identities=20% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccC-CCC-C-CCCCCCCCCEEEcCCCcCCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGL-TSL-K-GFPELPALTRLELSDNRISG 77 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~-~~l-~-~~~~l~~L~~l~l~~n~~~~ 77 (111)
..++..+|. . ++.++.|++++|.++. .+..+..+.+|+.|++++|.. ..+ + .+..+++|++|++++|.+..
T Consensus 13 ~~~L~~vP~----l-p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 13 FCNLTQVPQ----V-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCSSCCCS----S-CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCC----C-CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 456677765 2 2566777777777766 344455556666666655532 222 2 34455555555555555544
Q ss_pred ccc-ccCCCCCCcEEEcCCCCCC
Q psy8464 78 GLN-VLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 78 ~~~-~~~~~~~L~~l~l~~n~l~ 99 (111)
..+ .++.++.|++|++++|.+.
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCS
T ss_pred cCHhHccCCcccCEeeCcCCCCC
Confidence 322 2444555555555555444
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=4.3e-12 Score=89.61 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=42.8
Q ss_pred CCCccc--ccCcCCccEEEcCCCCCCC-hhhhhhcCCCccEEeccccc-CCC--CC--------CCCCCCCCCEEEcCCC
Q psy8464 8 FEPDTE--RMGKIQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVG-LTS--LK--------GFPELPALTRLELSDN 73 (111)
Q Consensus 8 ~p~~~~--~~~~~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~-~~~--l~--------~~~~l~~L~~l~l~~n 73 (111)
+|+.+. .+ +.++.|++++|.+.. +|..+..+++|+.+++++|. ++. +| .+..+++|+.|++++|
T Consensus 481 iP~~l~f~~L--~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNL--KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGC--TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccC--CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 454443 33 455555555555444 55555555555555555554 432 22 1222334455555555
Q ss_pred cCCCccc--ccCCCCCCcEEEcCCCCCCCC
Q psy8464 74 RISGGLN--VLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 74 ~~~~~~~--~~~~~~~L~~l~l~~n~l~~~ 101 (111)
.+..++. .++.++.|+.|++++|.++.+
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccc
Confidence 4443333 244444444455544444433
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=8e-11 Score=77.98 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.|++++|.++.+| .+..+++|+.+++++|.++.++ +..+++|++|++++|.+... + ++.++.|++|++++|.
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc
Confidence 78999999999999987 5789999999999999999886 77889999999999999884 3 7889999999999999
Q ss_pred CCCCcCCCCCCCC
Q psy8464 98 IKDLETLEPLFGS 110 (111)
Q Consensus 98 l~~~~~~~~l~~l 110 (111)
+++++ +..+++|
T Consensus 118 l~~l~-~~~l~~L 129 (457)
T 3bz5_A 118 LTKLD-VSQNPLL 129 (457)
T ss_dssp CSCCC-CTTCTTC
T ss_pred CCeec-CCCCCcC
Confidence 98864 4444443
No 106
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.24 E-value=6.5e-11 Score=79.37 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=26.3
Q ss_pred CCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464 61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 61 ~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
.++.|+.|++++|++..+ +..+.++.|+.+++++|.++++
T Consensus 449 ~l~~L~~L~Ls~N~l~~i-p~~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCTTCCEEECCSSCCSSC-CCGGGCTTCCEEECCSSCCCCC
T ss_pred cCChhcEEECCCCccCcC-CCcccCccCCEEecCCCccCCc
Confidence 456677777777777653 3344566777777777777655
No 107
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=5.3e-11 Score=81.54 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=42.5
Q ss_pred CccEEEcCCCCCCChhhhhh--cCCCccEEecccccCCCCC-CCCCCCCCCEEEcC------CCcCCCcc-cccCCCCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTS--EFTNLKILSAINVGLTSLK-GFPELPALTRLELS------DNRISGGL-NVLQSSPKL 88 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~--~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~------~n~~~~~~-~~~~~~~~L 88 (111)
.++.|++++|.++.+|..+. .+++|+.+++++|.++.+| .+..+++|+.|+++ +|.+.... ..++.++.|
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 45555555555555555443 5555555555555555554 34445555555553 23333222 234455555
Q ss_pred cEEEcCCCCCCCC
Q psy8464 89 AYLNLCGNRIKDL 101 (111)
Q Consensus 89 ~~l~l~~n~l~~~ 101 (111)
+.|++++|.+..+
T Consensus 569 ~~L~Ls~N~l~~i 581 (636)
T 4eco_A 569 TQLQIGSNDIRKV 581 (636)
T ss_dssp CEEECCSSCCCBC
T ss_pred CEEECCCCcCCcc
Confidence 5555555555444
No 108
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=2.1e-11 Score=77.02 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464 60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 60 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 99 (111)
..+++|+.|++++|.+...++.+..++.|++|++++|.++
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc
Confidence 3344444444444444432333333444444444444443
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=2.4e-11 Score=77.80 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCC-CC--CCCCCCCCCE-EEcCCCcCC
Q psy8464 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTS-LK--GFPELPALTR-LELSDNRIS 76 (111)
Q Consensus 2 ~~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~-l~--~~~~l~~L~~-l~l~~n~~~ 76 (111)
+++++++|..++ +++++|++++|+|+.+|. .|..+++|+.|++++|.+.+ ++ .|..+.++.. +.+..|++.
T Consensus 18 ~~~Lt~iP~~l~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 18 ESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp STTCCSCCTTCC----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCccCcCcC----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 467889997652 679999999999999776 46899999999999999755 55 5777877664 556678888
Q ss_pred Ccccc-cCCCCCCcEEEcCCCCCCCCcC
Q psy8464 77 GGLNV-LQSSPKLAYLNLCGNRIKDLET 103 (111)
Q Consensus 77 ~~~~~-~~~~~~L~~l~l~~n~l~~~~~ 103 (111)
.+++. +..+++|+++++++|.++.+..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred ccCchhhhhccccccccccccccccCCc
Confidence 76554 7789999999999999887644
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=7.7e-11 Score=74.26 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCccEEEcCCCCCCChhhh----hhcCCCccEEecccccCCCC-C-CCCCC---CCCCEEEcCCCcCCCcccccCCCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAAL----TSEFTNLKILSAINVGLTSL-K-GFPEL---PALTRLELSDNRISGGLNVLQSSPKL 88 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~----~~~~~~l~~l~l~~~~~~~l-~-~~~~l---~~L~~l~l~~n~~~~~~~~~~~~~~L 88 (111)
+.+++|++++|.++.++.. +..+.+|+.+++++|.++.. | .+..+ ++|++|++++|.+..++..+. +.|
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L 274 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKL 274 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCC
Confidence 4566666666666654442 35667777777777777765 3 33333 578888888888876544442 678
Q ss_pred cEEEcCCCCCCCCcCCCCCCC
Q psy8464 89 AYLNLCGNRIKDLETLEPLFG 109 (111)
Q Consensus 89 ~~l~l~~n~l~~~~~~~~l~~ 109 (111)
+.|++++|.+++++.+..+.+
T Consensus 275 ~~L~Ls~N~l~~~~~~~~l~~ 295 (310)
T 4glp_A 275 RVLDLSSNRLNRAPQPDELPE 295 (310)
T ss_dssp SCEECCSCCCCSCCCTTSCCC
T ss_pred CEEECCCCcCCCCchhhhCCC
Confidence 888888888877644444433
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=7.5e-11 Score=83.38 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCCCCCcccccCcCCccEEEcCCCC-CCC--hhhhhhcCC-------CccEEecccccCCCCCC---CCCCCCCCEEEcC
Q psy8464 5 LPFFEPDTERMGKIQIKELNLDNCR-STN--IAALTSEFT-------NLKILSAINVGLTSLKG---FPELPALTRLELS 71 (111)
Q Consensus 5 l~~~p~~~~~~~~~~l~~l~l~~n~-i~~--~~~~~~~~~-------~l~~l~l~~~~~~~l~~---~~~l~~L~~l~l~ 71 (111)
...+|+.+..+ +.++.|++++|. ++. +|..++.+. +|+.+++++|.++.+|. +..+++|+.|+++
T Consensus 504 ~~~iP~~l~~L--~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 504 MTQLPDFLYDL--PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CCSCCGGGGGC--SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT
T ss_pred CccChHHHhCC--CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC
Confidence 44566666655 677777777776 664 666555444 66777777776666554 5566666666666
Q ss_pred CCcCCCcccccCCCCCCcEEEcCCCCCCCC
Q psy8464 72 DNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 72 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 101 (111)
+|.+..+ +.++.++.|+.|++++|.+..+
T Consensus 582 ~N~l~~l-p~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 582 HNKVRHL-EAFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp TSCCCBC-CCCCTTSEESEEECCSSCCSCC
T ss_pred CCCcccc-hhhcCCCcceEEECcCCccccc
Confidence 6666642 3555566666666666665544
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4.6e-11 Score=76.22 Aligned_cols=80 Identities=21% Similarity=0.186 Sum_probs=71.9
Q ss_pred EEEcCCC-CCCChhhhhhcCCCccEEeccc-ccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEcCCC
Q psy8464 22 ELNLDNC-RSTNIAALTSEFTNLKILSAIN-VGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGN 96 (111)
Q Consensus 22 ~l~l~~n-~i~~~~~~~~~~~~l~~l~l~~-~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 96 (111)
.++++++ .++.+|. +..+.+|+.|++++ |.++.++ .|..+.+|+.|++++|.+..+++. |+.++.|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 5689998 9999999 88999999999996 9999987 588999999999999999986664 789999999999999
Q ss_pred CCCCCc
Q psy8464 97 RIKDLE 102 (111)
Q Consensus 97 ~l~~~~ 102 (111)
.++.++
T Consensus 91 ~l~~~~ 96 (347)
T 2ifg_A 91 ALESLS 96 (347)
T ss_dssp CCSCCC
T ss_pred ccceeC
Confidence 998874
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=2.6e-10 Score=75.50 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=18.7
Q ss_pred CccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC
Q psy8464 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK 57 (111)
Q Consensus 19 ~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~ 57 (111)
.+++|++++|.++.+| .++.+.+|+.+++++|.++.+|
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccC
Confidence 4555555555555544 2444555555555555444433
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=8.5e-11 Score=74.18 Aligned_cols=86 Identities=21% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCccEEEcCCCCCCChhh----hhhcCCCccEEecccccCCCCC---CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcE
Q psy8464 18 IQIKELNLDNCRSTNIAA----LTSEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNRISGGLNVLQSSPKLAY 90 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~----~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~ 90 (111)
+.+++|++++|.++.++. .+..+++|+.+++++|.++..+ .+..+++|+.|++++|.++.++..+. +.|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 455555555555553221 1234456666666666655522 23345566666666666665433333 56666
Q ss_pred EEcCCCCCCCCcCCC
Q psy8464 91 LNLCGNRIKDLETLE 105 (111)
Q Consensus 91 l~l~~n~l~~~~~~~ 105 (111)
|++++|.+++++.+.
T Consensus 279 L~Ls~N~l~~~p~~~ 293 (312)
T 1wwl_A 279 LDLSYNRLDRNPSPD 293 (312)
T ss_dssp EECCSSCCCSCCCTT
T ss_pred EECCCCCCCCChhHh
Confidence 666666666654433
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=82.15 Aligned_cols=86 Identities=23% Similarity=0.246 Sum_probs=64.8
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc-cCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV-LQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l 93 (111)
+.++.|++++|.+.. .+..+..+++|+.+++++|.++.+. .+..+++|+.|++++|.+..+.+. +..+++|++|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 677888888888877 4556677888888888888887763 577778888888888888765443 667788888888
Q ss_pred CCCCCCCCcC
Q psy8464 94 CGNRIKDLET 103 (111)
Q Consensus 94 ~~n~l~~~~~ 103 (111)
++|.++.+..
T Consensus 370 s~N~l~~i~~ 379 (844)
T 3j0a_A 370 RDNALTTIHF 379 (844)
T ss_dssp ETCCSCCCSS
T ss_pred CCCCCCcccC
Confidence 8888776544
No 116
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=3.7e-11 Score=75.83 Aligned_cols=82 Identities=29% Similarity=0.360 Sum_probs=48.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcC-----CCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCc---cccc--CCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEF-----TNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGG---LNVL--QSS 85 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~-----~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~---~~~~--~~~ 85 (111)
+.+++|++++|.++..|..+..+ ++|+.+++++|.+..++ .+..+++|++|++++|.+... ++.+ +.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 66777777777776665555554 66777777777666654 455666666666666664321 1122 344
Q ss_pred CCCcEEEcCCCCCC
Q psy8464 86 PKLAYLNLCGNRIK 99 (111)
Q Consensus 86 ~~L~~l~l~~n~l~ 99 (111)
+.|++|++++|.++
T Consensus 201 ~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 201 PTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCc
Confidence 55555555555554
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=4.3e-10 Score=76.41 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=47.3
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccccc
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVL 82 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~ 82 (111)
+++..+|+.++ +.++.|++++|.++.+| ..+++|+.+++++|.++.+|.+.. +|+.|++++|.+..+++
T Consensus 69 n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 69 LNLSSLPDNLP----PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp SCCSCCCSCCC----TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--
T ss_pred CCCCccCHhHc----CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--
Confidence 34555665432 45666666666666666 335566666666666665554222 55555555555554222
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q psy8464 83 QSSPKLAYLNLCGNRIKDL 101 (111)
Q Consensus 83 ~~~~~L~~l~l~~n~l~~~ 101 (111)
.++.|+.|++++|.++++
T Consensus 138 -~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTML 155 (571)
T ss_dssp -CCTTCCEEECCSSCCSCC
T ss_pred -cCccccEEeCCCCccCcC
Confidence 344455555555554443
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=2.9e-14 Score=84.81 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCC-CCCCCCCCEEEcCCCcCCCcccccCC
Q psy8464 6 PFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISGGLNVLQS 84 (111)
Q Consensus 6 ~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~l~l~~n~~~~~~~~~~~ 84 (111)
+++|..+..+ +.+++|++++|.++.+| .+..+.+|+.+++++|.++.+|. +..+++|+.|++++|.+.. .+.++.
T Consensus 38 ~~l~~~~~~l--~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTL--KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LSGIEK 113 (198)
T ss_dssp CCCHHHHHHT--TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HHHHHH
T ss_pred hhhhHHHhcC--CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CCcccc
Confidence 3344444445 67777777777777766 55667777777777777766552 2233456666666665554 223444
Q ss_pred CCCCcEEEcCCCCCCC
Q psy8464 85 SPKLAYLNLCGNRIKD 100 (111)
Q Consensus 85 ~~~L~~l~l~~n~l~~ 100 (111)
++.|+.+++++|.+++
T Consensus 114 l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHSSEEEESEEECCC
T ss_pred CCCCCEEECCCCcCCc
Confidence 4555555555555544
No 119
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.18 E-value=3.1e-11 Score=76.35 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=72.3
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
+.++.|++++|.++.++.. ..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++.+..++.|+.+++++|
T Consensus 169 ~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 7899999999999997655 35899999999999999887 677889999999999999986666888999999999999
Q ss_pred CCC
Q psy8464 97 RIK 99 (111)
Q Consensus 97 ~l~ 99 (111)
.+.
T Consensus 248 ~~~ 250 (317)
T 3o53_A 248 GFH 250 (317)
T ss_dssp CCB
T ss_pred Ccc
Confidence 987
No 120
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.17 E-value=1.9e-10 Score=80.24 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=36.0
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
+.++.|++++|.+.. +|..+..++.|+.+++++|.++. +| .+..+++|+.|++++|.+....+ .++.++.|+.+++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 344444444444443 44444444444444444444442 22 33444444455555444442222 2444444444444
Q ss_pred CCCCCC
Q psy8464 94 CGNRIK 99 (111)
Q Consensus 94 ~~n~l~ 99 (111)
++|.+.
T Consensus 522 ~~N~l~ 527 (768)
T 3rgz_A 522 SNNSFS 527 (768)
T ss_dssp CSSCCE
T ss_pred CCCccc
Confidence 444443
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=7.1e-10 Score=75.36 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.|++++|.++.+|. +.. +|+.+++++|.++.+|. .+++|+.|++++|.+..++. .++.|+.|++++|.
T Consensus 100 ~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence 556666666666666555 322 55555555555555443 34445555555555444221 23344444444444
Q ss_pred CCCC
Q psy8464 98 IKDL 101 (111)
Q Consensus 98 l~~~ 101 (111)
++++
T Consensus 172 L~~l 175 (571)
T 3cvr_A 172 LTFL 175 (571)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 4433
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=9.5e-10 Score=72.79 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=45.2
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
+.++.+++++|.++.++.. ..+++.+++++|.++.+|.+..+.+|++|++++|.+..++.. ...|+++++++|.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ 184 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc
Confidence 3445555555555443321 145666677777666666666666677777777666653221 2345555555555
Q ss_pred CCCCcCCCC
Q psy8464 98 IKDLETLEP 106 (111)
Q Consensus 98 l~~~~~~~~ 106 (111)
+++++.+..
T Consensus 185 l~~l~~~~~ 193 (454)
T 1jl5_A 185 LEELPELQN 193 (454)
T ss_dssp CSSCCCCTT
T ss_pred CCcCccccC
Confidence 555444333
No 123
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=1e-10 Score=73.68 Aligned_cols=80 Identities=25% Similarity=0.340 Sum_probs=69.0
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcC---CCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEE
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEF---TNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN 92 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~---~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~ 92 (111)
+.++.|++++|.+... |..+..+ ++|+.+++++|.++.+| .+. ++|+.|++++|++..+ +.+..++.|+.++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEE
Confidence 7899999999999994 7666565 69999999999999988 443 7999999999999974 4467889999999
Q ss_pred cCCCCCCC
Q psy8464 93 LCGNRIKD 100 (111)
Q Consensus 93 l~~n~l~~ 100 (111)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99999874
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=8e-10 Score=75.77 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCC
Q psy8464 3 SNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77 (111)
Q Consensus 3 ~~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~ 77 (111)
+++..+|..++ +.++.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.+..
T Consensus 50 n~L~~lp~~l~----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 50 SGLTTLPDCLP----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp SCCSCCCSCCC----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC
T ss_pred CCcCccChhhC----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC
Confidence 45666665433 456666666666666554 35566666666666665553 33445555555554443
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=3.1e-13 Score=80.33 Aligned_cols=94 Identities=26% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCccc--c
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN--V 81 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~--~ 81 (111)
.+..+| .+..+ +.+++|++++|.++.+|..+..+++|+.+++++|.++.++.+..+++|+.|++++|.+..+.. .
T Consensus 59 ~l~~l~-~~~~l--~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~ 135 (198)
T 1ds9_A 59 NIEKIS-SLSGM--ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK 135 (198)
T ss_dssp EESCCC-CHHHH--TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred CCcccc-ccccC--CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHH
Confidence 345566 56666 889999999999999888777788999999999999887766667889999999999987443 4
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~~ 100 (111)
+..++.|+++++++|.+.+
T Consensus 136 l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HTTTTTCSEEEECSCHHHH
T ss_pred HhcCCCCCEEEecCCcccc
Confidence 7788999999999998744
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=1e-09 Score=75.25 Aligned_cols=78 Identities=26% Similarity=0.198 Sum_probs=55.0
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCCCCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 97 (111)
++++.|++++|.++.+| ..+.+|+.+++++|.++.+|. .+++|+.|++++|.+..+++.+..++.|+.+++++|.
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 45667777777777665 345667777777777776664 4567778888888877655557777788888888887
Q ss_pred CCC
Q psy8464 98 IKD 100 (111)
Q Consensus 98 l~~ 100 (111)
+++
T Consensus 296 l~~ 298 (622)
T 3g06_A 296 LSE 298 (622)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=1.6e-10 Score=77.05 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC-CCCCCCCCCEEEcCCCcCCCcccccCCCCCCcEEEcCCC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK-GFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 96 (111)
+.++.|++++|.++.++.. ..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++.++.++.|+.+++++|
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 8999999999999997654 35899999999999999987 777889999999999999986666888899999999999
Q ss_pred CCC
Q psy8464 97 RIK 99 (111)
Q Consensus 97 ~l~ 99 (111)
.+.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 987
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.98 E-value=3.2e-09 Score=67.97 Aligned_cols=105 Identities=23% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhhhhhcCCCccEEecc-cccCCCCC--CCCCCCCCCEEEcCCCcCCCccc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAI-NVGLTSLK--GFPELPALTRLELSDNRISGGLN 80 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~-~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~ 80 (111)
++..+|+..+......++.|++++|.++.++..+....+++.+++. +|.++.+| .|..+.+|+.|++++|+++.+++
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 3444444333322245677888888888876665555677777776 46777777 46778888888888888877544
Q ss_pred ccCCCCCCcEEEcCC-CCCCCCcCCCCCCCC
Q psy8464 81 VLQSSPKLAYLNLCG-NRIKDLETLEPLFGS 110 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~-n~l~~~~~~~~l~~l 110 (111)
. .+..|+.|.+.+ +.++.++.+..+++|
T Consensus 220 ~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L 248 (350)
T 4ay9_X 220 Y--GLENLKKLRARSTYNLKKLPTLEKLVAL 248 (350)
T ss_dssp S--SCTTCCEEECTTCTTCCCCCCTTTCCSC
T ss_pred h--hhccchHhhhccCCCcCcCCCchhCcCh
Confidence 3 244455555443 345556555555444
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=2.6e-09 Score=67.63 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=61.6
Q ss_pred CCCCCcccccCcCCccEEEcCCCCCCC--hhhhhhcCCCccEEecccccCCC-CC-CCCCCCCCCEEEcCCC-cCCC--c
Q psy8464 6 PFFEPDTERMGKIQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTS-LK-GFPELPALTRLELSDN-RISG--G 78 (111)
Q Consensus 6 ~~~p~~~~~~~~~~l~~l~l~~n~i~~--~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~l~l~~n-~~~~--~ 78 (111)
...++..... +.++.|++++|.++. ++..+..+++|+.+++++|.++. .+ .+..+++|++|++++| .+.+ +
T Consensus 83 ~~~~~~~~~~--~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 83 DQPLAEHFSP--FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CSCCCSCCCC--BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred cccchhhccC--CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence 3344444444 778888888888775 66677778888888888887664 22 4556777888888877 4553 1
Q ss_pred ccccCCCCCCcEEEcCCC-CCC
Q psy8464 79 LNVLQSSPKLAYLNLCGN-RIK 99 (111)
Q Consensus 79 ~~~~~~~~~L~~l~l~~n-~l~ 99 (111)
...+..++.|++|++++| .++
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCC
T ss_pred HHHHhcCCCCCEEcCCCCCCcC
Confidence 222556777777777777 665
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.72 E-value=5.2e-09 Score=67.23 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCccEEEcCCCCCCChh-----hhhhcCC-CccEEecccccCCCCC--CCCCC-----CCCCEEEcCCCcCCCcccc---
Q psy8464 18 IQIKELNLDNCRSTNIA-----ALTSEFT-NLKILSAINVGLTSLK--GFPEL-----PALTRLELSDNRISGGLNV--- 81 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-----~~~~~~~-~l~~l~l~~~~~~~l~--~~~~l-----~~L~~l~l~~n~~~~~~~~--- 81 (111)
..++.|++++|.++..+ ..+..++ +|+.+++++|.++... .+..+ +.|++|++++|.+......
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34666666666665522 3334454 5666666666555432 11111 4555555555555432211
Q ss_pred --cCCC-CCCcEEEcCCCCCC
Q psy8464 82 --LQSS-PKLAYLNLCGNRIK 99 (111)
Q Consensus 82 --~~~~-~~L~~l~l~~n~l~ 99 (111)
+..+ +.|++|++++|.++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCccEEECcCCcCC
Confidence 2222 44555555555544
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.64 E-value=2.7e-08 Score=64.26 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=36.0
Q ss_pred CccEEEcCCCCCCC--hh---hhhhcCCCccEEecccccCCC------CC-CCCCCCCCCEEEcCCCcCC-----Ccccc
Q psy8464 19 QIKELNLDNCRSTN--IA---ALTSEFTNLKILSAINVGLTS------LK-GFPELPALTRLELSDNRIS-----GGLNV 81 (111)
Q Consensus 19 ~l~~l~l~~n~i~~--~~---~~~~~~~~l~~l~l~~~~~~~------l~-~~~~l~~L~~l~l~~n~~~-----~~~~~ 81 (111)
.++.|++++|.++. ++ ..+..++.|+.+++++|.+.. ++ .+..+++|+.|++++|.+. .++..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 44555555555542 33 233344455555555555441 12 3334445555555555542 11122
Q ss_pred cCCCCCCcEEEcCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~ 99 (111)
+..++.|+.|++++|.++
T Consensus 240 l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp GGGCTTCCEEECTTCCCC
T ss_pred HccCCCcCEEECCCCCCc
Confidence 334444555555555443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.3e-07 Score=60.05 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCC-EEEcCCCcCCCccc-ccCCCCCCcEEE
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALT-RLELSDNRISGGLN-VLQSSPKLAYLN 92 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~-~l~l~~n~~~~~~~-~~~~~~~L~~l~ 92 (111)
+.++.+++++|.++.++. .|..+.+|+.+++..| ++.++ .|.++.+|+ .+.+.. .+..+.+ .|..|+.|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 789999999999999666 4688999999999998 77777 689999999 999988 6665443 488999999999
Q ss_pred cCCCCCCCCc
Q psy8464 93 LCGNRIKDLE 102 (111)
Q Consensus 93 l~~n~l~~~~ 102 (111)
+..|.++.+.
T Consensus 304 l~~n~i~~I~ 313 (329)
T 3sb4_A 304 ATGDKITTLG 313 (329)
T ss_dssp ECSSCCCEEC
T ss_pred eCCCccCccc
Confidence 9999888763
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=1.6e-08 Score=65.30 Aligned_cols=83 Identities=29% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCccEEEcCCCCCC-----ChhhhhhcCCCccEEecccccCCCC-----C-CC--CCCCCCCEEEcCCCcCCC-----cc
Q psy8464 18 IQIKELNLDNCRST-----NIAALTSEFTNLKILSAINVGLTSL-----K-GF--PELPALTRLELSDNRISG-----GL 79 (111)
Q Consensus 18 ~~l~~l~l~~n~i~-----~~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~--~~l~~L~~l~l~~n~~~~-----~~ 79 (111)
+.++.|++++|.++ .++..+..+++|+.+++++|.++.. + .+ ..+++|+.|++++|.+.. ++
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 44555555555553 1444445555555555555555432 1 12 224555555555555554 22
Q ss_pred ccc-CCCCCCcEEEcCCCCCCC
Q psy8464 80 NVL-QSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 80 ~~~-~~~~~L~~l~l~~n~l~~ 100 (111)
..+ ..++.|++|++++|.+++
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 223 235556666666655543
No 134
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=8.3e-08 Score=59.65 Aligned_cols=60 Identities=30% Similarity=0.323 Sum_probs=29.7
Q ss_pred cCCCccEEecccccCCCCCCCC----CCCCCCEEEcCCCcCCCcccccCCCC--CCcEEEcCCCCCC
Q psy8464 39 EFTNLKILSAINVGLTSLKGFP----ELPALTRLELSDNRISGGLNVLQSSP--KLAYLNLCGNRIK 99 (111)
Q Consensus 39 ~~~~l~~l~l~~~~~~~l~~~~----~l~~L~~l~l~~n~~~~~~~~~~~~~--~L~~l~l~~n~l~ 99 (111)
.++.|+.|++++|.++.++.+. .+++|+.|++++|.+.++ +.+..+. .|+.|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 3455555555555555543222 345555555555555542 2222222 5555555555554
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.45 E-value=1.2e-07 Score=60.04 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCccEEEcCCC-CCCC--hhhhhhcCC-CccEEeccccc--CC--CCC-CCCCCCCCCEEEcCCCc-CCC-cccccCCCC
Q psy8464 18 IQIKELNLDNC-RSTN--IAALTSEFT-NLKILSAINVG--LT--SLK-GFPELPALTRLELSDNR-ISG-GLNVLQSSP 86 (111)
Q Consensus 18 ~~l~~l~l~~n-~i~~--~~~~~~~~~-~l~~l~l~~~~--~~--~l~-~~~~l~~L~~l~l~~n~-~~~-~~~~~~~~~ 86 (111)
+.++.|++++| .++. ++..+..++ +|+.+++++|. ++ .++ .+..+++|+.|++++|. +.+ .++.++.++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 44455555555 4443 344444444 55555555542 21 111 12234455555555555 322 122344555
Q ss_pred CCcEEEcCCC
Q psy8464 87 KLAYLNLCGN 96 (111)
Q Consensus 87 ~L~~l~l~~n 96 (111)
.|++|++++|
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 5555555555
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.44 E-value=1.2e-07 Score=60.86 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=17.1
Q ss_pred CccEEEcCCCCCCC-hhh----hhhcC-CCccEEecccccCCC
Q psy8464 19 QIKELNLDNCRSTN-IAA----LTSEF-TNLKILSAINVGLTS 55 (111)
Q Consensus 19 ~l~~l~l~~n~i~~-~~~----~~~~~-~~l~~l~l~~~~~~~ 55 (111)
.++.|++++|.++. .+. .+... ..|+.+++++|.++.
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 45555555555544 221 11222 355555555555544
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=2.9e-07 Score=57.23 Aligned_cols=74 Identities=28% Similarity=0.352 Sum_probs=59.0
Q ss_pred CCccEEEcCCCCCCChh---hhhhcCCCccEEecccccCCCCCC---CCCCCCCCEEEcCCCcCCCccc--------ccC
Q psy8464 18 IQIKELNLDNCRSTNIA---ALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRISGGLN--------VLQ 83 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~---~~~~~~~~l~~l~l~~~~~~~l~~---~~~l~~L~~l~l~~n~~~~~~~--------~~~ 83 (111)
+.++.|++++|.++.++ ..+..+++|+.|++++|.++.+.. +..+ +|+.|++.+|.+..-.+ .+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 68999999999999844 566789999999999999998753 4444 89999999999874221 245
Q ss_pred CCCCCcEEE
Q psy8464 84 SSPKLAYLN 92 (111)
Q Consensus 84 ~~~~L~~l~ 92 (111)
.+++|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 788888765
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.1e-06 Score=55.78 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=70.8
Q ss_pred CCCCCCCcccccCcCCccEEEcCCCCCCChhh-hhhcCCCcc-EEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc
Q psy8464 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAA-LTSEFTNLK-ILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL 79 (111)
Q Consensus 4 ~l~~~p~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~~l~-~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~ 79 (111)
++..+|+..+.-. ..++.+++.+| +..++. .|..+.+|+ .+.+.. .++.++ .|.++.+|+.+++..|.+..+.
T Consensus 237 ~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 237 NATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 4777887766654 78999999998 777544 568899999 999988 777776 7999999999999999998765
Q ss_pred cc-cCCCCCCcEEEc
Q psy8464 80 NV-LQSSPKLAYLNL 93 (111)
Q Consensus 80 ~~-~~~~~~L~~l~l 93 (111)
+. |..+++|+.++.
T Consensus 314 ~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCCCEEEC
T ss_pred hhhhcCCcchhhhcc
Confidence 43 778999988763
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=2.1e-07 Score=60.27 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=47.8
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEcCCCcCCCcc-----cc
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLELSDNRISGGL-----NV 81 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l~~n~~~~~~-----~~ 81 (111)
+.++.|++++|.++. +...+...+.|+.+++++|.++.. . .+.....|+.|++++|.+.+.. ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 456667777776655 222334556677777777766541 1 2344456777777777765411 11
Q ss_pred cCCCCCCcEEEcCCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l~ 99 (111)
+...+.|++|++++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 334566777777777765
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.29 E-value=4.9e-07 Score=59.42 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=35.6
Q ss_pred CccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC------C-CCCCCCCCCEEEcCCCcCCC-----cccc
Q psy8464 19 QIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL------K-GFPELPALTRLELSDNRISG-----GLNV 81 (111)
Q Consensus 19 ~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l------~-~~~~l~~L~~l~l~~n~~~~-----~~~~ 81 (111)
.++.|++++|.++. ++..+..+++|+.+++++|.+... + .+..+++|+.|++++|.+.. +...
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 45555555555544 233334445555555555544331 0 11124455555555555443 1112
Q ss_pred cCCCCCCcEEEcCCCCC
Q psy8464 82 LQSSPKLAYLNLCGNRI 98 (111)
Q Consensus 82 ~~~~~~L~~l~l~~n~l 98 (111)
+..++.|+++++++|.+
T Consensus 280 l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 280 LRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHCTTCCEEECTTCCC
T ss_pred HhhCCCcceEECCCCCC
Confidence 22344455555555544
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.26 E-value=4.5e-07 Score=59.57 Aligned_cols=34 Identities=41% Similarity=0.537 Sum_probs=15.3
Q ss_pred ccEEecccccCCC-----CC-CCCCCCCCCEEEcCCCcCC
Q psy8464 43 LKILSAINVGLTS-----LK-GFPELPALTRLELSDNRIS 76 (111)
Q Consensus 43 l~~l~l~~~~~~~-----l~-~~~~l~~L~~l~l~~n~~~ 76 (111)
|+.+++++|.++. ++ .+..+++|++|++++|.+.
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 4445555444442 11 2344445555555555443
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=1.2e-06 Score=51.48 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCccEEEcCCC-CCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464 18 IQIKELNLDNC-RSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLELSDNRISGG-----LN 80 (111)
Q Consensus 18 ~~l~~l~l~~n-~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l~~n~~~~~-----~~ 80 (111)
+.++.|++++| .+.. +...+.....++.|++++|.+..- . .+.....|++|++++|.+.+. ..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56778888887 7765 233334556788888888877541 1 233345677777777777641 12
Q ss_pred ccCCCCCCcEEEc--CCCCCC
Q psy8464 81 VLQSSPKLAYLNL--CGNRIK 99 (111)
Q Consensus 81 ~~~~~~~L~~l~l--~~n~l~ 99 (111)
.+...+.|++|++ ++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCC
T ss_pred HHHhCCCceEEEecCCCCCCC
Confidence 3445566777777 667665
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=1.1e-06 Score=51.65 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCC-----C-CCCCCCCCCEEEc--CCCcCCCc-----c
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSL-----K-GFPELPALTRLEL--SDNRISGG-----L 79 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~l~l--~~n~~~~~-----~ 79 (111)
+.+++|++++|.+.. +...+.....|+.|++++|.+..- . .+.....|+.|++ ++|.+... .
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 679999999999987 333445668899999999998862 2 4566678999999 88998752 1
Q ss_pred cccCCCCCCcEEEcCCCCCC
Q psy8464 80 NVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 80 ~~~~~~~~L~~l~l~~n~l~ 99 (111)
..+...+.|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 22445688999999999874
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.12 E-value=6.3e-07 Score=58.04 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=17.1
Q ss_pred CCCCCEEEcCCCcCCCc-----ccccCCCCCCcEEEcCCCCCC
Q psy8464 62 LPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 62 l~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~l~~n~l~ 99 (111)
.+.|++|++++|.+.+. ...+...+.|+.|++++|.++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 34455555555554321 011233345555555555554
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.89 E-value=5e-06 Score=56.20 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCccEEEcCCCC--CCC-hhhhh-hcCCCccEEecccccCCC--CC-CCCCCCCCCEEEcCCCcCCCc-ccc-cCCCCCC
Q psy8464 18 IQIKELNLDNCR--STN-IAALT-SEFTNLKILSAINVGLTS--LK-GFPELPALTRLELSDNRISGG-LNV-LQSSPKL 88 (111)
Q Consensus 18 ~~l~~l~l~~n~--i~~-~~~~~-~~~~~l~~l~l~~~~~~~--l~-~~~~l~~L~~l~l~~n~~~~~-~~~-~~~~~~L 88 (111)
+.++.|+++.|. ++. ....+ ..+++|+.+++++|.++. ++ .+..+++|+.|++++|.+... .+. +..++.|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 678888886543 555 23333 447788888888888764 22 245678899999998887532 222 3467889
Q ss_pred cEEEcCCCCCCCC
Q psy8464 89 AYLNLCGNRIKDL 101 (111)
Q Consensus 89 ~~l~l~~n~l~~~ 101 (111)
+.|++++|.+++.
T Consensus 516 ~~L~ls~n~it~~ 528 (592)
T 3ogk_B 516 RYLWVQGYRASMT 528 (592)
T ss_dssp CEEEEESCBCCTT
T ss_pred CeeECcCCcCCHH
Confidence 9999999987643
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.78 E-value=0.00012 Score=47.98 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=47.2
Q ss_pred CCccEEEcCCCCCC-----C-hhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCC
Q psy8464 18 IQIKELNLDNCRST-----N-IAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKL 88 (111)
Q Consensus 18 ~~l~~l~l~~n~i~-----~-~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L 88 (111)
..|+.+.+.++.+. . -+..|..+.+|+.+.+. +.++.++ .|.++.+|+.+.+..+ +..+.. .|..+ .|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 45666666655554 2 23344556666666666 3355555 5666777777777544 443222 36666 77
Q ss_pred cEEEcCCCCCCCC
Q psy8464 89 AYLNLCGNRIKDL 101 (111)
Q Consensus 89 ~~l~l~~n~l~~~ 101 (111)
+.+.+.+|....+
T Consensus 348 ~~l~l~~n~~~~l 360 (401)
T 4fdw_A 348 KEVKVEGTTPPQV 360 (401)
T ss_dssp CEEEECCSSCCBC
T ss_pred CEEEEcCCCCccc
Confidence 7787777766544
No 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.76 E-value=0.00015 Score=40.26 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=39.6
Q ss_pred cEEEcCCCCCC--ChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCC
Q psy8464 21 KELNLDNCRST--NIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRIS 76 (111)
Q Consensus 21 ~~l~l~~n~i~--~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~ 76 (111)
..++.+++.++ .+|..+ ...++.|++++|.++.++ .|..+.+|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888887 677542 235788888888888877 4667778888888888764
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=6.4e-06 Score=48.16 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCccEEEcCCCCCCC-hhhhhhcCCCccEEeccccc-CCCCC--CCCCC----CCCCEEEcCCCc-CCCc-ccccCCCCC
Q psy8464 18 IQIKELNLDNCRSTN-IAALTSEFTNLKILSAINVG-LTSLK--GFPEL----PALTRLELSDNR-ISGG-LNVLQSSPK 87 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~l----~~L~~l~l~~n~-~~~~-~~~~~~~~~ 87 (111)
-.++.||++++.|+. --..+..+++|+.|+++++. ++.-. .+..+ ++|++|+++++. +++. ...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999988 22334789999999999985 55422 23332 479999999874 6641 233668899
Q ss_pred CcEEEcCCCC-CCC
Q psy8464 88 LAYLNLCGNR-IKD 100 (111)
Q Consensus 88 L~~l~l~~n~-l~~ 100 (111)
|++|+++++. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999875 553
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=0.00017 Score=39.97 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=39.2
Q ss_pred CCCCC--CCCCcccccCcCCccEEEcCCCCCCChhhh-hhcCCCccEEecccccCC
Q psy8464 2 NSNLP--FFEPDTERMGKIQIKELNLDNCRSTNIAAL-TSEFTNLKILSAINVGLT 54 (111)
Q Consensus 2 ~~~l~--~~p~~~~~~~~~~l~~l~l~~n~i~~~~~~-~~~~~~l~~l~l~~~~~~ 54 (111)
++.|+ .+|..++ ++++.|++++|.|+.++.. |..+..|+.+++.+|.+.
T Consensus 17 ~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 17 RRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCCccccCCCCCC----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34566 7876532 6799999999999996654 588999999999999874
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.54 E-value=0.00043 Score=46.84 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC----------------------------CCCCCCC
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK----------------------------GFPELPA 64 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~----------------------------~~~~l~~ 64 (111)
+.++.|++++|.++. ++..+..+++|+.+++.++.+..++ .+..+.+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 566666666666651 4444455666666666665543321 2334445
Q ss_pred CCEEEcCCCcCCCcccccCCCCCCcEEEcCCCCCC
Q psy8464 65 LTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 65 L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 99 (111)
|+.+.+++.....++..+..+++|++|++++|.++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence 55555554433332222445667777777777653
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.42 E-value=0.0013 Score=43.00 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=27.8
Q ss_pred hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEcCC
Q psy8464 37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNLCG 95 (111)
Q Consensus 37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~ 95 (111)
|..+.+|+.+++..|.++.++ .|. +..|+.+.+..+ +..+.. .|..+..|+.+.+..
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 344555555555555555544 232 345555555432 333222 244566666666654
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.31 E-value=8.7e-05 Score=50.17 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccc-cCCC--CCC-CCCCCCCCEEEcCCCcCCCcc----cc-cCCCC
Q psy8464 18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINV-GLTS--LKG-FPELPALTRLELSDNRISGGL----NV-LQSSP 86 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~-~~~~--l~~-~~~l~~L~~l~l~~n~~~~~~----~~-~~~~~ 86 (111)
+.++.|++++|.++. .+..+ ..+++|+.+++.++ .++. ++. ...+++|++|++++|.+.+.. +. ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 466777777776665 33333 24666677666665 3322 111 123456666666665543311 11 11444
Q ss_pred CCcEEEcCCCC
Q psy8464 87 KLAYLNLCGNR 97 (111)
Q Consensus 87 ~L~~l~l~~n~ 97 (111)
.|+.|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 55555555553
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.28 E-value=4.3e-05 Score=51.68 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred CCccEEEcCCCCCCC-hhhhh-hcCCCccEEecccccCCCCC--CC-CCCCCCCEEEcCCCcCCCcc-cc-cCCCCCCcE
Q psy8464 18 IQIKELNLDNCRSTN-IAALT-SEFTNLKILSAINVGLTSLK--GF-PELPALTRLELSDNRISGGL-NV-LQSSPKLAY 90 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~-~~~~~l~~l~l~~~~~~~l~--~~-~~l~~L~~l~l~~n~~~~~~-~~-~~~~~~L~~ 90 (111)
+.++.|++++ .++. ....+ ..+++|+.+++++|.++... .+ ..+++|+.|++++|.+.+.. .. ...+++|+.
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 4555666654 4443 22222 23556666666666654311 11 33566677777776664211 11 224566777
Q ss_pred EEcCCCCC
Q psy8464 91 LNLCGNRI 98 (111)
Q Consensus 91 l~l~~n~l 98 (111)
|++++|.+
T Consensus 511 L~l~~~~~ 518 (594)
T 2p1m_B 511 LWMSSCSV 518 (594)
T ss_dssp EEEESSCC
T ss_pred EeeeCCCC
Confidence 77776665
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.65 E-value=0.0054 Score=39.41 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=31.6
Q ss_pred hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcC
Q psy8464 37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLC 94 (111)
Q Consensus 37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~ 94 (111)
|..+.+|+.+.+.++.++.++ .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 355566666666666665555 4666666666666543 33322 225556666655554
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.0015 Score=38.79 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCccEEEcCCC-CCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCcCCCc-----cc
Q psy8464 18 IQIKELNLDNC-RSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNRISGG-----LN 80 (111)
Q Consensus 18 ~~l~~l~l~~n-~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~~~~~-----~~ 80 (111)
+.++.|+++++ .|.. +-..+..-..|+.|++++|.+..-. .+..=..|+.|++++|.+... .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67888999885 7765 2333455677899999999887522 122335788899999888741 12
Q ss_pred ccCCCCCCcEEEcCCC
Q psy8464 81 VLQSSPKLAYLNLCGN 96 (111)
Q Consensus 81 ~~~~~~~L~~l~l~~n 96 (111)
.+..-..|+.|+++++
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444456888888754
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.60 E-value=0.022 Score=36.52 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
..++.+.+..+ ++.+ ...+..+..++.+.+..+ +..++ .|..+.+|+.+.+..+.++.+.+ .|..|.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 44555555544 3443 233455667777776543 55555 57888999999998888776443 3778999999998
Q ss_pred CCC
Q psy8464 94 CGN 96 (111)
Q Consensus 94 ~~n 96 (111)
..+
T Consensus 318 p~~ 320 (379)
T 4h09_A 318 PTA 320 (379)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.55 E-value=0.018 Score=37.24 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=44.1
Q ss_pred CCccEEEcCCCCCCChhh-hhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l 93 (111)
..++.+.+. +.+..++. .|..+.+|+.+.+..+ ++.++ .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 344444443 23344333 3455667777776543 55554 5777777777777543 44432 23667777887777
Q ss_pred CCCC
Q psy8464 94 CGNR 97 (111)
Q Consensus 94 ~~n~ 97 (111)
.++.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 7653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.45 E-value=0.019 Score=37.19 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCccEEEcCCCCCCChhhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcc-cccCCCCCCcEEEcC
Q psy8464 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLC 94 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~ 94 (111)
..++.+.+..+...--...|..+..|+.+.+. +.+..++ .|.++.+|+.+.+..+ ++.+. ..|..|.+|+.+.+.
T Consensus 265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 45666666554333233445667788888775 4466666 6888999999999764 44433 347789999999996
Q ss_pred CCCCCCC
Q psy8464 95 GNRIKDL 101 (111)
Q Consensus 95 ~n~l~~~ 101 (111)
.+ ++.+
T Consensus 343 ~s-v~~I 348 (394)
T 4gt6_A 343 SS-VTKI 348 (394)
T ss_dssp TT-CCBC
T ss_pred cc-cCEE
Confidence 54 5544
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.20 E-value=0.00049 Score=40.21 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCc-CCCc-ccccCCC----CCCcEEEcCCCC-CCC
Q psy8464 40 FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNR-ISGG-LNVLQSS----PKLAYLNLCGNR-IKD 100 (111)
Q Consensus 40 ~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~-~~~~-~~~~~~~----~~L~~l~l~~n~-l~~ 100 (111)
-..|+.++++++.++... .+..+++|+.|+++++. +++. ...+... +.|++|++++|. +++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 346999999999987643 56789999999999985 5541 2224443 479999999985 764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.13 E-value=0.013 Score=38.00 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=49.1
Q ss_pred CCccEEEcCCCCCCChh-hhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCccc-ccCCCCCCcEEEc
Q psy8464 18 IQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLN-VLQSSPKLAYLNL 93 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 93 (111)
..++.+.+.++ ++.++ ..|..+.+|+.+.+..+ ++.++ .|.++.+|+.+.+..+ +..+.+ .|..|.+|+.+.+
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 45666666543 44433 34566777888877543 66665 5778888888888765 544332 3778888888887
Q ss_pred CCC
Q psy8464 94 CGN 96 (111)
Q Consensus 94 ~~n 96 (111)
..+
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 654
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.95 E-value=0.0075 Score=39.00 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=44.7
Q ss_pred CCccEEEcCCCCCCC-hhhhh--hcCCCccEEeccc--cc------CCCCC-CC--CCCCCCCEEEcCCCcCCCcc-cc-
Q psy8464 18 IQIKELNLDNCRSTN-IAALT--SEFTNLKILSAIN--VG------LTSLK-GF--PELPALTRLELSDNRISGGL-NV- 81 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-~~~~~--~~~~~l~~l~l~~--~~------~~~l~-~~--~~l~~L~~l~l~~n~~~~~~-~~- 81 (111)
++|+.|++..+.++. ....+ ..+++|+.|++.. +. +..+. .+ ..+++|+.|.+.+|.+.+.. ..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 566666666666655 11222 2577888887642 11 11111 11 23567777777776664311 11
Q ss_pred --cCCCCCCcEEEcCCCCCCC
Q psy8464 82 --LQSSPKLAYLNLCGNRIKD 100 (111)
Q Consensus 82 --~~~~~~L~~l~l~~n~l~~ 100 (111)
...++.|++|+++.|.+.+
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBH
T ss_pred HhCccCCCCCEEECCCCCCCh
Confidence 1245677777777777654
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.60 E-value=0.0031 Score=40.79 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCccEEEcCC--CC------CCChhhhh--hcCCCccEEecccccCCC-----CCCCCCCCCCCEEEcCCCcCCCc----
Q psy8464 18 IQIKELNLDN--CR------STNIAALT--SEFTNLKILSAINVGLTS-----LKGFPELPALTRLELSDNRISGG---- 78 (111)
Q Consensus 18 ~~l~~l~l~~--n~------i~~~~~~~--~~~~~l~~l~l~~~~~~~-----l~~~~~l~~L~~l~l~~n~~~~~---- 78 (111)
+.++.|+++. +. +..+...+ ..+++|+.|++.+|.+.. +.....+++|+.|+++.|.+.+.
T Consensus 219 p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~ 298 (362)
T 2ra8_A 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298 (362)
T ss_dssp TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHH
T ss_pred CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHH
Confidence 7788887742 11 21222222 246788999888877653 11123467889999988887652
Q ss_pred -ccccCCCCCCcEEEcCCCCCC
Q psy8464 79 -LNVLQSSPKLAYLNLCGNRIK 99 (111)
Q Consensus 79 -~~~~~~~~~L~~l~l~~n~l~ 99 (111)
...+..++.|+.|+++.|.++
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhhcccCCcceEEECCCCcCC
Confidence 111235678888999888775
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.42 E-value=0.018 Score=37.33 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=55.2
Q ss_pred CCCCCCcccccCcCCccEEEcCCCCCCCh-hhhhhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCCCcCCCcccc
Q psy8464 5 LPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISGGLNV 81 (111)
Q Consensus 5 l~~~p~~~~~~~~~~l~~l~l~~n~i~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~n~~~~~~~~ 81 (111)
+..+++..+.-. ..|+.+++..+ ++.+ ...|..+.+|+.+.+..+ ++.++ .|.++.+|+.+.+..+ +......
T Consensus 308 i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~ 383 (394)
T 4fs7_A 308 VKFIGEEAFESC-TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYD 383 (394)
T ss_dssp CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGG
T ss_pred cceechhhhcCC-CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhhe
Confidence 334444433333 67888888654 6665 445688899999999766 77776 6889999999998754 3322234
Q ss_pred cCCCCCCcEE
Q psy8464 82 LQSSPKLAYL 91 (111)
Q Consensus 82 ~~~~~~L~~l 91 (111)
+..+.+|+.+
T Consensus 384 F~~c~~L~~I 393 (394)
T 4fs7_A 384 FEDTTKFKWI 393 (394)
T ss_dssp BCTTCEEEEE
T ss_pred ecCCCCCcEE
Confidence 6677766643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.23 E-value=0.017 Score=34.30 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=56.5
Q ss_pred CCccEEEcCCCCCCC-----hhhhhhcCCCccEEecccccCCCCC------CCCCCCCCCEEEcCCCc---CCCc-----
Q psy8464 18 IQIKELNLDNCRSTN-----IAALTSEFTNLKILSAINVGLTSLK------GFPELPALTRLELSDNR---ISGG----- 78 (111)
Q Consensus 18 ~~l~~l~l~~n~i~~-----~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~l~l~~n~---~~~~----- 78 (111)
..++.|++++|.|.+ +-..+..-..|+.|++++|.+..-. .+..=..|+.|+++++. +...
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 679999999999987 3334456678999999999997622 34444679999998653 3321
Q ss_pred ccccCCCCCCcEEEcCCCCC
Q psy8464 79 LNVLQSSPKLAYLNLCGNRI 98 (111)
Q Consensus 79 ~~~~~~~~~L~~l~l~~n~l 98 (111)
...+..-+.|+.++++.+.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 11233456788898876653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.62 E-value=4.4 Score=21.03 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=18.1
Q ss_pred hhcCCCccEEecccccCCCCC--CCCCCCCCCEEEcCC
Q psy8464 37 TSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSD 72 (111)
Q Consensus 37 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~l~l~~ 72 (111)
|..+..|+.+.+..+ ++.+. .|..+.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555443 34444 455566666555543
Done!