RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8464
(111 letters)
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 78.2 bits (193), Expect = 6e-20
Identities = 53/92 (57%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRSTNIA--ALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+KEL LDN RS LT EF L+ LS INVGLTS+ P+L L +LELSDNR+S
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 77 GGLNVLQSS-PKLAYLNLCGNRIKDLETLEPL 107
GGL VL P L +LNL GN+IKDL T+EPL
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 77.9 bits (192), Expect = 1e-19
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
++EL LDNC+S + I LT+EF NL+ LS INVGL S+ P+LP L +LELS+NRI
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84
Query: 77 GGLNVL-QSSPKLAYLNLCGNRIKDLETLEPL 107
GGL++L + P L +LNL GN++KD+ TLEPL
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116
Score = 25.5 bits (56), Expect = 3.5
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 25/87 (28%)
Query: 19 QIKELNLDNCRSTNIA-ALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS- 76
++K+L L R L + NL L+ LS N++
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLN----------------------LSGNKLKD 109
Query: 77 -GGLNVLQSSPKLAYLNLCGNRIKDLE 102
L L+ L L+L + +L
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEVTNLN 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 74.7 bits (184), Expect = 2e-18
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
++ +EL+L + I L + + + + L GFP L L L +++NRI
Sbjct: 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 78
Query: 78 GLNVLQSS-PKLAYLNLCGNRIKDLETLEPLFG 109
L + P L L L N + +L L+PL
Sbjct: 79 IGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111
Score = 34.6 bits (80), Expect = 0.002
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 53 LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + L+L +I N+ + + ++ N I+ L+ L
Sbjct: 9 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 60.9 bits (147), Expect = 2e-12
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ +L L+ + T+I L + NL L + L +L L L L N IS
Sbjct: 66 NVTKLFLNGNKLTDIKPL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS-D 123
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+N L P+L L L N+I D+ L L
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRL 152
Score = 59.4 bits (143), Expect = 7e-12
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ + NL T+ +E ++ + A N + S++G LP +T+L L+ N+++
Sbjct: 22 ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-D 79
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L + L +L L N+IKDL +L+ L
Sbjct: 80 IKPLTNLKNLGWLFLDENKIKDLSSLKDL 108
Score = 58.2 bits (140), Expect = 2e-11
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++K L+L++ ++I L L+ L N +T + L L L L DN+IS
Sbjct: 110 KLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-D 167
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L KL L L N I DL L L
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISDLRALAGL 196
Score = 51.6 bits (123), Expect = 4e-09
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
Q++ L L N + T+I L S T L LS + ++ + L L L LS N IS
Sbjct: 132 QLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-D 189
Query: 79 LNVLQSSPKLAYLNLCGNRIKD 100
L L L L L +
Sbjct: 190 LRALAGLKNLDVLELFSQECLN 211
Score = 50.9 bits (121), Expect = 6e-09
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
+ E + I F + +T EL ++ ++ +++ I +
Sbjct: 1 MGETITVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV 58
Query: 80 NVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+Q P + L L GN++ D++ L L
Sbjct: 59 QGIQYLPNVTKLFLNGNKLTDIKPLTNL 86
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 59.0 bits (142), Expect = 1e-11
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+ L+L + R + + L++L A + L ++ G LP L L L +NR+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523
Query: 78 -GLNVLQSSPKLAYLNLCGNRIKDLETL 104
+ L S P+L LNL GN + E +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Score = 53.2 bits (127), Expect = 1e-09
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 1 MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGF 59
+ E +M ++ L+L + T + L + + L + L +L
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRALPPAL 482
Query: 60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
L L L+ SDN + ++ + + P+L L LC NR++ ++PL
Sbjct: 483 AALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 55.5 bits (134), Expect = 2e-10
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ T+ ++ + LSA G+T+++G L L LEL DN+I+
Sbjct: 20 NAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-D 77
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L L++ K+ L L GN +K++ + L
Sbjct: 78 LAPLKNLTKITELELSGNPLKNVSAIAGL 106
Score = 52.4 bits (126), Expect = 2e-09
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L L + + T++A L T + L L ++ L ++ L+L+ +I+
Sbjct: 64 NLIGLELKDNQITDLAPL-KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT-D 121
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L L L L N+I ++ L L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGL 150
Score = 52.0 bits (125), Expect = 2e-09
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L LD + TNI+ L + TNL+ LS N ++ L L LT L+ DN+IS
Sbjct: 130 NLQVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-D 187
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L S P L ++L N+I D+ L
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSPLANT 216
Score = 51.2 bits (123), Expect = 4e-09
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
IK L+L + + T++ L + +NL++L +T++ L L L + + ++S
Sbjct: 108 SIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-D 165
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L L + KL L N+I D+ L L
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASL 194
Score = 50.8 bits (122), Expect = 6e-09
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L++ N + +++ L + + L L A + ++ + LP L + L +N+IS
Sbjct: 152 NLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-D 209
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLE 105
++ L ++ L + L I +
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFY 236
Score = 41.6 bits (98), Expect = 9e-06
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
N ++A +T +L +T L ++ + +Q L L L N+
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74
Query: 98 IKDLETLEPL 107
I DL L+ L
Sbjct: 75 ITDLAPLKNL 84
Score = 32.0 bits (73), Expect = 0.025
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 50 NVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + P L ++ + ++ + L+ G + +E ++ L
Sbjct: 6 PTAINVIFPDPALANAIKIAAGKSNVT-DTVTQADLDGITTLSAFGTGVTTIEGVQYL 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 53.9 bits (130), Expect = 5e-10
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ +L L+ + T+I L + NL L + L +L L L L N IS
Sbjct: 69 NVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-D 126
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+N L P+L L L N+I D+ L L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRL 155
Score = 52.4 bits (126), Expect = 1e-09
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ + NL T+ +E ++ + A N + S++G LP +T+L L+ N+++
Sbjct: 25 ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-D 82
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L + L +L L N++KDL +L+ L
Sbjct: 83 IKPLANLKNLGWLFLDENKVKDLSSLKDL 111
Score = 52.4 bits (126), Expect = 2e-09
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++K L+L++ ++I L L+ L N +T + L L L L DN+IS
Sbjct: 113 KLKSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-D 170
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L KL L L N I DL L L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRALAGL 199
Score = 42.3 bits (100), Expect = 6e-06
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
F + +T EL ++ ++ +++ I + +Q P + L L GN+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79
Query: 98 IKDLETLEPL 107
+ D++ L L
Sbjct: 80 LTDIKPLANL 89
Score = 36.6 bits (85), Expect = 6e-04
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L+L++ + ++I L + T L+ L ++ L+ L L LEL
Sbjct: 157 KLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL-- 213
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L N N L T E +
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVTPEII 242
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 53.8 bits (129), Expect = 5e-10
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
+ L+L RS + L S + L ++ +P L L LS+NR+
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE--NIPELLSLNLSNNRLYRL 185
Query: 77 -GGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+++Q +P L LNL GN +K L+ +
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKI 217
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 52.3 bits (126), Expect = 1e-09
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ NL T++ + E + ++ + N + SL G L L LS N+IS
Sbjct: 20 NAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-D 77
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+ L+ KL L++ NR+K+L +
Sbjct: 78 LSPLKDLTKLEELSVNRNRLKNLNGIPSA 106
Score = 48.9 bits (117), Expect = 2e-08
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN 80
+EL+++ R N+ + L L N L L L L + +N++ +
Sbjct: 88 EELSVNRNRLKNLNGI--PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIV 144
Query: 81 VLQSSPKLAYLNLCGNRIKDLETLEPL 107
+L KL L+L GN I + L L
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLTRL 171
Score = 48.1 bits (115), Expect = 6e-08
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L LDN + +L NL+ILS N L S+ L L L+L N I+
Sbjct: 107 CLSRLFLDNNELRDTDSL-IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT-N 164
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L K+ +++L G + +
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCVNEP 188
Score = 45.4 bits (108), Expect = 5e-07
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
+KEL+L + + ++++ L + T L+ LS L +L G L+RL L +N +
Sbjct: 63 TNLKELHLSHNQISDLSPL-KDLTKLEELSVNRNRLKNLNGI-PSACLSRLFLDNNELR- 119
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L L L++ N++K + L L
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFL 149
Score = 44.2 bits (105), Expect = 1e-06
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
N + +T L EL + ++ I L +Q L L+L N+
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74
Query: 98 IKDLETLEPL 107
I DL L+ L
Sbjct: 75 ISDLSPLKDL 84
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 51.8 bits (125), Expect = 3e-09
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L + + T+I+AL TNL+ L ++ + L + L L N
Sbjct: 89 KLTNLYIGTNKITDISAL-QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+ L + L YL + +++KD+ + L
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANL 176
Score = 51.8 bits (125), Expect = 3e-09
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L T++ E ++ L + S++G L L L L+ N+I+
Sbjct: 23 EGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-D 80
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L + KL L + N+I D+ L+ L
Sbjct: 81 ISPLSNLVKLTNLYIGTNKITDISALQNL 109
Score = 51.4 bits (124), Expect = 4e-09
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
+ L + + ++ + + T+L LS + + L +L N+I+
Sbjct: 155 TGLNYLTVTESKVKDVTPI-ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT- 212
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + + +L L + N+I DL L L
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANL 242
Score = 49.8 bits (120), Expect = 1e-08
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L+L+ + +I+ L + T+L +A +T + + L L++ +N+I+
Sbjct: 178 DLYSLSLNYNQIEDISPL-ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT-D 235
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+ L + +L +L + N+I D+ ++ L
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDL 264
Score = 48.7 bits (117), Expect = 3e-08
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
Q+ L + + ++I A+ + T LK+L+ + ++ + L L L L++N++
Sbjct: 244 QLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ V+ L L L N I D+ L L
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRPLASL 332
Score = 47.5 bits (114), Expect = 7e-08
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ LNL+ + T+I+ L S L L +T + L L L L+++ IS
Sbjct: 67 NLEYLNLNGNQITDISPL-SNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS-D 124
Query: 79 LNVLQSSPKLAYLNLCGNR-IKDLETLEPL 107
++ L + K+ LNL N + DL L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNM 154
Score = 47.5 bits (114), Expect = 8e-08
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ LNL + + + S T L L+ + + L L L L+ N+I
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-D 191
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L S L Y N+I D+ + +
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPVANM 220
Score = 45.2 bits (108), Expect = 5e-07
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L + N + T+++ L + + L L ++ + +L L L + N+IS
Sbjct: 222 RLNSLKIGNNKITDLSPL-ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-D 279
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
++VL + +L L L N++ +
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNE 302
Score = 44.5 bits (106), Expect = 1e-06
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN 80
L I ++ +T + EL ++T+L ++ +++ +
Sbjct: 3 ATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ 60
Query: 81 VLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L YLNL GN+I D+ L L
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISPLSNL 87
Score = 39.1 bits (92), Expect = 9e-05
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
++K LN+ + + ++I+ L + + L L N L + + L LT L LS N I+
Sbjct: 266 KLKMLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 77 GGLNVLQSSPKLAYLNLCGNRIK 99
+ L S K+ + IK
Sbjct: 325 D-IRPLASLSKMDSADFANQVIK 346
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 43 LKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
L+ + + + +L R L ++ + + + L + G ++ ++
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVT-DVVTQEELESITKLVVAGEKVASIQ 60
Query: 103 TLEPL 107
+E L
Sbjct: 61 GIEYL 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 51.1 bits (123), Expect = 4e-09
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ + L T+ + ++ + L A +G+ S+ G L LT++ S+N+++
Sbjct: 25 EKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-D 82
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L++ KL + + N+I D+ L L
Sbjct: 83 ITPLKNLTKLVDILMNNNQIADITPLANL 111
Score = 50.3 bits (121), Expect = 9e-09
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ EL L + +NI+ L + T L L L + L LT L L N IS
Sbjct: 266 KLTELKLGANQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-D 323
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ + S KL L N++ D+ +L L
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANL 352
Score = 50.0 bits (120), Expect = 1e-08
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L++ + + ++I+ L ++ TNL+ L A N ++ + L L L L+ N++
Sbjct: 178 TLERLDISSNKVSDISVL-AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 235
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L S L L+L N+I +L L L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGL 264
Score = 49.2 bits (118), Expect = 2e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L L+ + +I+ + S NL L+ ++ + L L RL +N++S
Sbjct: 288 ALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD- 345
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L + + +L+ N+I DL L L
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANL 374
Score = 48.8 bits (117), Expect = 3e-08
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ EL+L+ + +I L + TNL L N +++L L LT L+L N+IS
Sbjct: 222 NLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-N 279
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L L L L N+++D+ + L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNL 308
Score = 47.3 bits (113), Expect = 1e-07
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ ++N N + T+I L T L + N + + L LT L L +N+I+
Sbjct: 69 NLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT-D 126
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L++ L L L N I D+ L L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGL 155
Score = 46.5 bits (111), Expect = 2e-07
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+++L+ N + + T L+ L + ++ + +L L L ++N+IS
Sbjct: 157 SLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-D 213
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L L L+L GN++KD+ TL L
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGTLASL 242
Score = 43.8 bits (104), Expect = 2e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L L ++I+ + S T L+ L N ++ + L + L N+IS
Sbjct: 310 NLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS-D 367
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L L + ++ L L +
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAP 391
Score = 43.0 bits (102), Expect = 3e-06
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ ++ ++N + +I L + TNL L+ N +T + L L RLELS N IS
Sbjct: 91 KLVDILMNNNQIADITPL-ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-D 148
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L L L+ GN++ DL+ L L
Sbjct: 149 ISALSGLTSLQQLSF-GNQVTDLKPLANL 176
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
+ +T +L +T L+ I ++ ++ L +N N+
Sbjct: 21 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 79
Query: 98 IKDLETLEPL 107
+ D+ L+ L
Sbjct: 80 LTDITPLKNL 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 49.2 bits (118), Expect = 1e-08
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+ + L N T++ + N+K L+ N+ T+ L L RL + ++
Sbjct: 45 SLTYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ L L L++ + D
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSI 128
Score = 44.9 bits (107), Expect = 5e-07
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKGFPELPALTRLELSDNRIS 76
+ L++ + + + + + + N +T + LP L L + + +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
++ PKL L I +
Sbjct: 173 D-YRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 44.6 bits (106), Expect = 6e-07
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTS--LKGFPELPALTRLELSDNRIS 76
IK+L ++N +TN + S +NL+ L + +TS + L +LT L++S +
Sbjct: 67 NIKDLTINNIHATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 77 G-GLNVLQSSPKLAYLNLCGN-RIKDLETLEPL 107
L + + PK+ ++L N I D+ L+ L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
K ++ A +T ++ +L ++ N+ +T L G + L +++ +
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NY 81
Query: 80 NVLQSSPKLAYLNLCGNRIKDLE 102
N + L L + G + +
Sbjct: 82 NPISGLSNLERLRIMGKDVTSDK 104
Score = 43.4 bits (103), Expect = 2e-06
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLT--SLKGFPELPALTRLELSDNRI 75
++ L + T+ S T+L +L + L LP + ++LS N
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 76 SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L++ P+L LN+ + + D +E
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 48.9 bits (117), Expect = 2e-08
Identities = 19/86 (22%), Positives = 30/86 (34%)
Query: 22 ELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNV 81
EL+ + A S K L+ + + + L L L N I N+
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL 88
Query: 82 LQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L L + N+I L +E L
Sbjct: 89 DAVADTLEELWISYNQIASLSGIEKL 114
Score = 48.9 bits (117), Expect = 2e-08
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
++ L+L I L + L+ L + SL G +L L L +S+N+I+
Sbjct: 71 NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLETLE 105
G ++ L + KL L L GN + +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Score = 44.3 bits (105), Expect = 9e-07
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPEL-PALTRLELSDNRISGGL 79
K L L I++L S NL+ILS + ++ + L L +S N+I+ L
Sbjct: 51 KHLALSTNNIEKISSL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-L 108
Query: 80 NVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ ++ L L + N+I + ++ L
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKL 136
Score = 36.2 bits (84), Expect = 8e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 62 LPALTRLELSDNRIS--GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
L A L LS N I L+ + L L+L N IK +E L+ + +
Sbjct: 47 LKACKHLALSTNNIEKISSLSGM---ENLRILSLGRNLIKKIENLDAVADT 94
Score = 28.5 bits (64), Expect = 0.39
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 65 LTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L I L + +L L N I+ + +L +
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGM 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 45.9 bits (109), Expect = 3e-07
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 21 KELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
L+L A +T L L+ LT L+ LP L L+LS N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 80 NVLQSSPKLAYLNLCGNRIKDLE 102
+ Q+ P L L++ NR+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLP 116
Score = 40.9 bits (96), Expect = 2e-05
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
+ L+L + + ++ L L +L LTSL L L L L N +
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDL 101
+L +PKL L+L N + +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 30.8 bits (70), Expect = 0.057
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 19 QIKELNLDNCRSTNIAA-LTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L++ R T++ L+ L L +L P L +L L++N +
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ +L L L L N + +
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 30.1 bits (68), Expect = 0.11
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 52 GLTSLKGFPELPA-LTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
LT+L P+LP T L LS+N + L L +L LNL + L+ L
Sbjct: 21 NLTAL--PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 45.0 bits (107), Expect = 8e-07
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
++ L L +A S LK L I G++S+ L L L N I
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S L + KL L+ N I L
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Score = 40.4 bits (95), Expect = 3e-05
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
++EL+L + + + + LK L +L P+LT L + N
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 77 GGL--NVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
L L++ L L+L + I+ + +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Score = 38.8 bits (91), Expect = 9e-05
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
Q++ L+L R A S F NL +L +N+ + L E LPAL L L N
Sbjct: 401 QLELLDLAFTRLKVKDAQ-SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 74 RISGG----LNVLQSSPKLAYLNLCGNRIKDL 101
G N LQ+ +L L L + +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Score = 38.1 bits (89), Expect = 2e-04
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL--KGFPELPALTRLELSDN 73
++EL+L + + NL L ++N+ SL + F E P L L+L+
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 74 RISG--GLNVLQSSPKLAYLNLCGNRIKDL 101
R+ + Q+ L LNL + +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEF---TNLKILSAINVGLTSLKG 58
NL + + ++ +I+ E +++ ++ ++
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 59 --FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
F L L+L+ +S + L L L L N+ ++L
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC 317
Score = 35.4 bits (82), Expect = 0.002
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG------FPELPALTRLELSD 72
++ LNL ++ F L +++ T LK F L L L LS
Sbjct: 377 HLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEP 106
+ + + P L +LNL GN +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Score = 34.6 bits (80), Expect = 0.004
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 21 KELNL-DNCRSTNIAALT-SEFTNLKILS----AINVGLTSLKGFPELPALTRLELSDNR 74
L++ N + + NL+ L I L L L LS N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+ P+L L+L R+K + P
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Score = 33.1 bits (76), Expect = 0.009
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEF----TNLKILSAINVGLTSL--KGFPELPALTRLELSD 72
++ LNL + L+IL L+S+ F L + ++LS
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 73 NRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
NR++ S K YLNL N I +
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASNHISIIL 539
Score = 31.9 bits (73), Expect = 0.026
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
NC + + + + + L L +++ F L LT L+L+ +I +
Sbjct: 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
QS +L L L N + +
Sbjct: 78 QSQHRLDTLVLTANPLIFMA 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 43.6 bits (103), Expect = 2e-06
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+K LNL + IA NL++L+ L L F LP + ++L N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + KL L+L N + + + +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Score = 41.7 bits (98), Expect = 9e-06
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 16 GKIQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD 72
G ++ LNL + + + + + ++ F L L L+L D
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 73 NRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
N ++ + P + + L GN++ L +
Sbjct: 372 NALT----TIHFIPSIPDIFLSGNKLVTLPKI 399
Score = 40.2 bits (94), Expect = 4e-05
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
I ++ L + + + + + L L +P L L L+ NR S
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 79 LN--VLQSSPKLAYLNLCGNRIKDLE 102
+P L L L N ++
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAW 467
Score = 38.2 bits (89), Expect = 2e-04
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG------FPELPALTRLELSDN 73
+ L L + A S F L+ L + +G F LP L L+L +
Sbjct: 26 TERLLLSFNYIRTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
+I + Q L L L + D + F +
Sbjct: 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Score = 37.9 bits (88), Expect = 2e-04
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL----KGFPELPALTRLELSDN 73
++ L+L + + + +L L GL+ F L ALTRL+LS N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 74 RIS--GGLNVLQSSPKLAYLNLCGNRIKDL--ETLEPL 107
+I L ++ N+I + LEPL
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Score = 35.6 bits (82), Expect = 0.001
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 19 QIKELNLDNCRSTNIAALT------SEFTNLKILSAINVGLTSLKG--FPELPALTRLEL 70
+++L L ++L++L + L SL F L AL L L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 71 SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ NR++ L+ L L++ N++
Sbjct: 512 NSNRLTV-LSHNDLPANLEILDISRNQLLAPN 542
Score = 33.2 bits (76), Expect = 0.010
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 19 QIKELNLDNCRSTNIA--ALTSEFTNLKIL-------SAINVGLTSLKGFPELPALTRLE 69
++ L L+ R ++ + SE +L+ L F L L L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 70 LSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
L+ N ++ V L L+L NR+ L
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Score = 32.1 bits (73), Expect = 0.025
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALT---SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDN 73
I + T ++++ L + + SL F L L L L+ N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+I+ L LNL N + +L
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Score = 30.9 bits (70), Expect = 0.069
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 52 GLTSLKGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIK 99
LT + L RL LS N I + +L L L
Sbjct: 15 NLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 43.5 bits (103), Expect = 2e-06
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
I ++EL+ + + L IL + LT P L ++LS N +
Sbjct: 205 IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262
Query: 78 -GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ +L L + NR+ L
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVALN 288
Score = 38.5 bits (90), Expect = 1e-04
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
++ L L + T+ A L + + L + L + F ++ L RL +S+NR+
Sbjct: 227 ELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
Q P L L+L N + +E
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVE 311
Score = 37.3 bits (87), Expect = 3e-04
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
Q++ LNL++ + I + ++ L + L F +P LT L L N +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S + ++PKL L++ N ++ +E
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIE 157
Score = 36.6 bits (85), Expect = 6e-04
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
++ L L + R T++ + + + L NV L A+ L+ S N I+
Sbjct: 166 SLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
V L L L N + D L
Sbjct: 221 RGPVNVE---LTILKLQHNNLTDTAWLLNY 247
Score = 35.8 bits (83), Expect = 0.001
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL-KGFPELPALTRLELSDNR 74
+ E++L I F ++ L + + L +L +P L L+LS N
Sbjct: 249 GLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 75 ISGGLNVLQSSPKLAYLNLCGNRIKDL 101
+ +L L L N I L
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTL 333
Score = 35.4 bits (82), Expect = 0.002
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
+++ L + N R + LK+L + L + + P+ L L L N I
Sbjct: 273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV- 331
Query: 78 GLNVLQSS--PKLAYLNLCGNRI 98
L+ S L L L N
Sbjct: 332 ---TLKLSTHHTLKNLTLSHNDW 351
Score = 34.6 bits (80), Expect = 0.003
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 18 IQIKELNLDNCRSTNIAALTS-EFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNR 74
++++D N KI++ N + L + L L+D +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
I + + L + N I+ L
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Score = 32.3 bits (74), Expect = 0.021
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L+ +++ L LS N L ++ F +L L+LS NR+
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L+++ S L + N+ N + L +
Sbjct: 178 THVDLSLIPS---LFHANVSYNLLSTLAIPIAV 207
Score = 30.0 bits (68), Expect = 0.14
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 46 LSAINVGLTSLKGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
+ + L + ++ + +L S ++ LNL +I++++T
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86
Score = 26.9 bits (60), Expect = 1.2
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+K L+L + ++ +F L+ L + + +LK L L LS N
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 352
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 43.6 bits (103), Expect = 2e-06
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 19 QIKELNLDNC-RSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNR 74
+ L+L + I+ F L L +N+G + + L L LE+S N
Sbjct: 172 SLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
L L + +++ +E
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Score = 39.7 bits (93), Expect = 4e-05
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
+K LNL C ++ LT L+ L ++ F L +L +L + ++++S
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDL--ETLEPL 107
N L LNL N + L + PL
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Score = 39.7 bits (93), Expect = 5e-05
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD-NRIS 76
L L + T I + + L+ L N + S+ F +P+L RL+L + ++
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L YLNL IKD+ L PL
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217
Score = 37.4 bits (87), Expect = 4e-04
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
C ++ + +N + L+ + + ++ F L L L+L N I +
Sbjct: 60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
L L L N + +
Sbjct: 120 NGLASLNTLELFDNWLTVIP 139
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 42.8 bits (101), Expect = 5e-06
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINV---GLTSL-KGFPELPALTRLELSDNR 74
++ L+L + + L +++ G+ ++ F L L L+ +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 75 ISG--GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ +V S L YL++ +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Score = 38.9 bits (91), Expect = 9e-05
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDNRI 75
+K L+L +++ L+ L + L + F L L L++S
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKD 100
+ L L + GN ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQE 459
Score = 38.2 bits (89), Expect = 2e-04
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L ++A S ++L+ L A+ L SL+ L L L ++ N I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 76 S--GGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ L +L+L N+I+ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 35.1 bits (81), Expect = 0.002
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+ L L NC+ L + +LK L+ + + +LP+L L+LS N +S
Sbjct: 305 GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 78 --GLNVLQSSPKLAYLNLCGNRIKDLET 103
+ L YL+L N + + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDNR 74
+ L++ + + + ++L++L F EL LT L+LS +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ S L LN+ N++K +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 34.3 bits (79), Expect = 0.004
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ +L + + S + L +N L +L RL + N+
Sbjct: 283 NVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGN- 339
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
P L +L+L N +
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Score = 33.9 bits (78), Expect = 0.005
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNR 74
+++L ++ LK L+ + + S K F L L L+LS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 75 IS----GGLNVLQSSPKLAY-LNLCGNRIKDLE 102
I L VL P L L+L N + ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Score = 33.5 bits (77), Expect = 0.007
Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
C N + + K L L L F P L L+LS I
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
QS L+ L L GN I+ L
Sbjct: 73 QSLSHLSTLILTGNPIQSLA 92
Score = 32.8 bits (75), Expect = 0.014
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILS----AINVGLTSLKGFPELPALTRLELSDNRIS 76
K L + + N + +L+ L ++ + +L L+LS N +
Sbjct: 328 KRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDL 101
+ +L +L+ + +K +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQM 411
Score = 31.2 bits (71), Expect = 0.045
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 19 QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNR 74
++ L + + + +E NL L L L F L +L L ++ N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRI 98
+ + L + L N
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 25.1 bits (55), Expect = 6.6
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L+L C+ ++ + ++L++L+ + L S+ F L +L ++ L N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 76 S 76
Sbjct: 531 D 531
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 42.2 bits (99), Expect = 7e-06
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
I ++EL+ + + L IL + LT P L ++LS N +
Sbjct: 211 IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268
Query: 78 -GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ +L L + NR+ L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALN 294
Score = 37.6 bits (87), Expect = 3e-04
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
++ L L + T+ A L + + L + L + F ++ L RL +S+NR+
Sbjct: 233 ELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
Q P L L+L N + +E
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVE 317
Score = 36.1 bits (83), Expect = 0.001
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
Q++ LNL++ + I + ++ L + L F +P LT L L N +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S + ++PKL L++ N ++ +E
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIE 163
Score = 36.1 bits (83), Expect = 0.001
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS 76
+ E++L I + L+ L N L +L +P L L+LS N +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDL 101
+L L L N I L
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTL 339
Score = 35.7 bits (82), Expect = 0.001
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L L + R T++ + + + L NV L A+ L+ S N I+
Sbjct: 172 SLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ +L L L N + D L
Sbjct: 227 RG--PVNVELTILKLQHNNLTDTAWLLNY 253
Score = 33.7 bits (77), Expect = 0.006
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
+++ L + N R + LK+L + L + + P+ L L L N I
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV- 337
Query: 78 GLNVLQSS--PKLAYLNLCGNRI 98
L+ S L L L N
Sbjct: 338 ---TLKLSTHHTLKNLTLSHNDW 357
Score = 33.7 bits (77), Expect = 0.006
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 40 FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGN 96
N KI++ N + L + L L+D +I + + L + N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 97 RIKDLE 102
I+ L
Sbjct: 110 AIRYLP 115
Score = 31.4 bits (71), Expect = 0.042
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L+ +++ L LS N L ++ F +L L+LS NR+
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L+++ P L + N+ N + L +
Sbjct: 184 THVDLSLI---PSLFHANVSYNLLSTLAIPIAV 213
Score = 28.0 bits (62), Expect = 0.65
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+K L+L + ++ +F L+ L + + +LK L L LS N
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 358
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 41.8 bits (98), Expect = 1e-05
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+KEL + R + +L + LK L LTSL L L + N+++
Sbjct: 222 GLKELIVSGNR---LTSLPVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRL 276
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
L +NL GN + +
Sbjct: 277 PESLIHLSSETTVNLEGNPLSER 299
Score = 38.7 bits (90), Expect = 1e-04
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+++ L + + + +L L LS + LT L P L +L + N+++
Sbjct: 82 ELRTLEVSGNQ---LTSLPVLPPGLLELSIFSNPLTHLPALPS--GLCKLWIFGNQLT-- 134
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
++ P L L++ N++ L
Sbjct: 135 -SLPVLPPGLQELSVSDNQLASL 156
Score = 37.2 bits (86), Expect = 5e-04
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
LN+ T + ++ L + LTSL P L LE+S N+++
Sbjct: 41 GNAVLNVGESGLTTLPD--CLPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
+ +L+ + + L
Sbjct: 97 PVLPPGLLELSIFSNPLTHLPAL 119
Score = 36.0 bits (83), Expect = 0.001
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++EL++ + + +A+L + + L L A N LTSL L L +SDN+++
Sbjct: 142 GLQELSVSDNQ---LASLPALPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLA-- 194
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETL 104
++ +L L NR+ L L
Sbjct: 195 -SLPTLPSELYKLWAYNNRLTSLPAL 219
Score = 34.5 bits (79), Expect = 0.003
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ EL++ + T+ L + + L L LTSL P L L +SDN+++
Sbjct: 102 GLLELSIFSNPLTH---LPALPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLA-- 154
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
++ +L L N++ L
Sbjct: 155 -SLPALPSELCKLWAYNNQLTSL 176
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 41.5 bits (98), Expect = 1e-05
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
+++ L L + + L+ L +T ++ F L + +EL N +
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 77 GGL---NVLQSSPKLAYLNLCGNRIKDL 101
Q KL+Y+ + I +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTI 186
Score = 38.8 bits (91), Expect = 1e-04
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG- 77
+ + + T I +L L +T + L L +L LS N IS
Sbjct: 174 SYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLE 102
L ++P L L+L N++ +
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVP 256
Score = 37.7 bits (88), Expect = 2e-04
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS 76
+ +L L + + + + +L+ L N L + G + + + L +N IS
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
Query: 77 -------GGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ ++L N ++ E
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Score = 33.4 bits (77), Expect = 0.008
Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKIL-------SAINVG-LTSLKGFPELPALTRLEL 70
++EL+L+N + + ++ ++++ SAI + + + + L
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 71 SDNRISGGL---NVLQSSPKLAYLNLCGNR 97
N + + + A + L +
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 32.7 bits (75), Expect = 0.012
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
C + + + + +L N +T +K F L L L L +N+IS
Sbjct: 37 QCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 83 QSSPKLAYLNLCGNRIKDL 101
KL L L N++K+L
Sbjct: 97 APLVKLERLYLSKNQLKEL 115
Score = 30.7 bits (70), Expect = 0.057
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINV---GLTSL--KGFPELPALTRLELSDNR 74
L+L N + T I +F NLK L + + ++ + F L L RL LS N+
Sbjct: 54 TALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 75 ISGGLNVLQSS--PKLAYLNLCGNRIKDLE 102
+ L L L + N I +
Sbjct: 112 LK----ELPEKMPKTLQELRVHENEITKVR 137
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 41.5 bits (98), Expect = 1e-05
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL-KGFPELPALTRLELSDNR 74
Q+ +L+L + + + L +++ + ++ F L L L+ +
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Query: 75 IS--GGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ +V S L YL++ +
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Score = 40.0 bits (94), Expect = 4e-05
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRI 75
+K L+L +++ L+ L + L + F L L L++S
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKD 100
+ L L + GN ++
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQE 164
Score = 39.6 bits (93), Expect = 5e-05
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 20 IKELNLDNCRSTNIAALT-SEFTNLKILS----AINVGLTSLKGFPELPALTRLELSDNR 74
L L++ + ++ + T L LS ++ + +L L+LS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 75 ISGGLNVLQSSPKLAYLNLCGNRIKDL 101
+ + +L +L+ + +K +
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQM 116
Score = 38.8 bits (91), Expect = 9e-05
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRIS 76
L++ + + + ++L++L A N + F EL LT L+LS ++
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S L LN+ N L+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Score = 35.4 bits (82), Expect = 0.002
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 21 KELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
+ L + + + +E NL L L L F L +L L +S N
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDLE--TLEPLFGS 110
+ L L+ N I + L+ S
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Score = 30.8 bits (70), Expect = 0.056
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDN 73
+ L+L C+ ++ F +L L +N+ SL + L +L L+ S N
Sbjct: 176 NLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 74 RISG-GLNVLQSSPK-LAYLNLCGNRI 98
I LQ P LA+LNL N
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 29.6 bits (67), Expect = 0.18
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 50 NVGLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ GLTS+ G P + TRLEL N++ V +L L+L N +
Sbjct: 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73
Query: 108 F 108
Sbjct: 74 D 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 41.3 bits (97), Expect = 1e-05
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 19 QIKELNLDNC-RSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNR 74
++ L+L R + I+ F L L +N+ L + L L L+LS N
Sbjct: 161 SLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+S Q L L + ++I+ +E
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Score = 40.5 bits (95), Expect = 3e-05
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD-NRIS 76
L L + R T I + LK L N + S+ F +P+L RL+L + R+S
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L YLNL ++++ L PL
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206
Score = 39.7 bits (93), Expect = 5e-05
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
++ LNL C I LT L L L++++ F L L +L + ++I
Sbjct: 186 NLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDL 101
N + L +NL N + L
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLL 270
Score = 38.2 bits (89), Expect = 2e-04
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
C N+ + TN ++L+ + +K F L L L+LS N I +
Sbjct: 49 ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
L L L NR+ +
Sbjct: 109 NGLANLNTLELFDNRLTTIP 128
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 41.2 bits (97), Expect = 2e-05
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 27 NCRSTNIAALTS--EFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQS 84
N + ++ + E ++ + A N + S++G LP + L L N++ ++ L+
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DISALKE 83
Query: 85 SPKLAYLNLCGNRIKDLET 103
L YL L GN+++ L
Sbjct: 84 LTNLTYLILTGNQLQSLPN 102
Score = 30.4 bits (69), Expect = 0.073
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
++ L L + +I+AL TNL L L SL F +L L L L +N+
Sbjct: 64 NVRYLALGGNKLHDISALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-- 120
Query: 77 GGLNVLQSSP--------KLAYLNLCGNRIKDLE 102
LQS P L YLNL N+++ L
Sbjct: 121 -----LQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Score = 25.7 bits (57), Expect = 3.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 41 TNLKILSAINVGLTSL-KG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
TNL L L SL +G F +L L L L N+ L+S P + L
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-------LKSVPDGVFDRL 204
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 41.3 bits (97), Expect = 2e-05
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGL--NVL 82
C + + + ++ + + L F L L L++ + N
Sbjct: 16 ICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
+ L L L N+ LE
Sbjct: 76 RGLSSLIILKLDYNQFLQLE 95
Score = 33.6 bits (77), Expect = 0.007
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGL---NVLQSSPKLAYLNLCG 95
++L IL L+ F L L L L+ + G + N + L L L
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 96 NRIKDLE 102
N IK ++
Sbjct: 139 NNIKKIQ 145
Score = 32.8 bits (75), Expect = 0.014
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 39 EFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCG 95
E + +K + +L F L +L L+ N I+ N L LNL
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 96 NRIKDLE 102
N + ++
Sbjct: 333 NFLGSID 339
Score = 32.0 bits (73), Expect = 0.025
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK----GFPELPALTRLELSDN 73
+ L LD + + + NL++L+ L F L +L L L DN
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 74 RIS--GGLNVLQSSPKLAYLNLCGNRIKDL 101
I + + + L+L N++K +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Score = 31.6 bits (72), Expect = 0.034
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 20 IKELNLDNCRSTNIAALTSE-FTNLKILSAINVGLTSLKG------FPELPALTRLELSD 72
+ ++L +IA L F+ L+ L + V + F L +L L+L
Sbjct: 32 VNYVDLSL---NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
N+ L L L + F
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125
Score = 31.6 bits (72), Expect = 0.035
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNR 97
T+L L+ L S+ F L L L+LS N I G P L L L N+
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 98 IKDL 101
+K +
Sbjct: 383 LKSV 386
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 41.2 bits (97), Expect = 2e-05
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 2 NSNLPFFEPDT-ERMGKIQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGF 59
NL FEP E + + I E L + + N+ +S V + L+
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
Query: 60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
P+ L + ++ P L L L N+ L
Sbjct: 304 PKHFKWQSLSIIRCQLKQ--FPTLDLPFLKSLTLTMNKGSISFKKVAL 349
Score = 40.0 bits (94), Expect = 5e-05
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L + + + S T+L+ L A+ L SL+ +L L +L ++ N I
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 76 SGG--LNVLQSSPKLAYLNLCGNRIKDL--ETLEPLFGST 111
+ L +++L N I+ + L+ L +
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Score = 38.9 bits (91), Expect = 1e-04
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 13 ERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAIN---VGLTSLKGFPELPALTRLE 69
+G ++ L+L + ++A L+ L + +T F L L L+
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430
Query: 70 LSDNRISGGL-NVLQSSPKLAYLNLCGNRIKDL 101
+S + L L + GN KD
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463
Score = 36.5 bits (85), Expect = 7e-04
Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
+++ L+ + + S F +L+ L +++ T+ K + L +L L+++ N
Sbjct: 400 ELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 74 RISGGL--NVLQSSPKLAYLNLCGNRIKDL 101
NV ++ L +L+L +++ +
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEF---TNLKILSAINVGLTSLKG-FPELPALTRLELSDNR 74
+ L+L + + +L+ L G + F L L L+ +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410
Query: 75 ISG--GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ + S KL YL++ K
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440
Score = 34.6 bits (80), Expect = 0.003
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 19 QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNR 74
+ L + ++ + + TNL L L + F L L L +S N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ + L+ L+ NRI+ +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Score = 34.2 bits (79), Expect = 0.005
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
C ++ + + ++ K + L LK F L L+LS I
Sbjct: 17 QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
L+ L L GN I+
Sbjct: 77 HGLHHLSNLILTGNPIQSFS 96
Score = 33.9 bits (78), Expect = 0.005
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK----GFPELPALTRLELSDNR 74
+K L L + + + +L L L+ +L L+LS N
Sbjct: 329 FLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 75 ISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
+L +L+ + +K +
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Score = 32.7 bits (75), Expect = 0.013
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK---GFPELPALTRLELSDNR 74
++ L + ++ + + LK L+ + + S K F L L ++LS N
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 75 ISG----GLNVLQSSPK-LAYLNLCGNRIKDLE 102
I L L+ +P+ L++ N I ++
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197
Score = 27.7 bits (62), Expect = 0.74
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 18 IQIKELNL-DNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--------FPELPALTR 67
I++ EL L N S+NI L + I + L +T
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 68 LELSDNRI---SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
E S + ++ ++L G IK LE + F
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Score = 25.0 bits (55), Expect = 7.4
Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 4/88 (4%)
Query: 17 KIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDN 73
L++ I + L L+ +S L L L
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 74 RISGGLNVLQSSPKLAYLNLCGNRIKDL 101
L+ LC I +
Sbjct: 240 EFK-DERNLEIFEPSIMEGLCDVTIDEF 266
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 40.9 bits (96), Expect = 2e-05
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEF----TNLKILSAINVGLTSLKGFPE----LPALTRLEL 70
++ L+L S +L+ L L S++ E L LT L++
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 71 SDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
S N + Q K+ +LNL I+ +
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
Score = 37.8 bits (88), Expect = 3e-04
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG-G 78
++ L++ N N+ + + L+ L L +L P L +++S N++
Sbjct: 433 LEVLDVSNN---NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP 489
Query: 79 LNVLQSSPKLAYLNLCGNRI 98
+ L + L N
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509
Score = 37.8 bits (88), Expect = 3e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+++ LNL + + L++L N L S LP L L +S N++
Sbjct: 411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF--SLFLPRLQELYISRNKLKT- 465
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L P L + + N++K +
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVP 489
Score = 37.4 bits (87), Expect = 3e-04
Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG-- 58
N + + ++ + I+ L++ + + S +K ++ N + +
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
Query: 59 FPELPALTRLELSDNRIS----GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
L +L L+LS+N + + P L L L N ++ ++ +
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Score = 34.7 bits (80), Expect = 0.003
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISG-GLNVL 82
+ RS + ++ S +K L +T + L L L +RI+ +
Sbjct: 11 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
S L +L+L N + L
Sbjct: 71 YSLGSLEHLDLSDNHLSSLS 90
Score = 33.9 bits (78), Expect = 0.005
Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 23 LNLDNCRSTNIAALTS-EFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISG-G 78
+ + S ++ L E ++ L L + L + R+ + ++++
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
+ Q L +L+L N + +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356
Score = 33.2 bits (76), Expect = 0.009
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 1 MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGF 59
+ F++ T ++K + ++N + + +L+ L +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352
Query: 60 PE-----LPALTRLELSDNRIS---GGLNVLQSSPKLAYLNLCGNRIKDLE 102
P+L L LS N + +L + L L++ N +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Score = 33.2 bits (76), Expect = 0.009
Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDNR 74
++ L+L + +++++ ++LK L+ + +L FP L L L + +
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 75 ISGGL--NVLQSSPKLAYLNLCGNRIKDLE 102
+ L L + +++ +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Score = 32.0 bits (73), Expect = 0.024
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG----LTSLKG--FPELPALTRLELSD 72
+K LNL + TS F NL L + +G + ++ F L +L LE+
Sbjct: 99 SLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ L+S + +L L + L
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Score = 31.2 bits (71), Expect = 0.049
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE----LPALTRLELSDNR 74
++ L L ++ LK L+++++ + P+ + L LS
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 75 IS-------GGLNVLQSS-----------PKLAYLNLCGNRIKDLE 102
I L VL S P+L L + N++K L
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP 467
Score = 30.8 bits (70), Expect = 0.076
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
++ L L + R I +L+ L + L+SL F L +L L L N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 76 S--GGLNVLQSSPKLAYLNLCGN 96
G ++ + L L +
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNV 133
Score = 29.3 bits (66), Expect = 0.20
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ +L + + L + + S G E + RL + +
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301
Query: 79 L-NVLQSSPKLAYLNLCGNRIKDLE 102
L V K+ + + +++ +
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVP 326
Score = 26.2 bits (58), Expect = 2.5
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDNRI 75
EL + N + +++ + + + L+ E L ++ LEL D +
Sbjct: 151 NELEIKALSLRNYQS--QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
Query: 76 S----GGLNVLQSSPKLAYLNLCGNRIKDL 101
+ L V + S + L G+ + D
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 40.5 bits (95), Expect = 3e-05
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG 77
L++ +C T + L L+ L+ +++++G EL L ++L +++
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 78 -GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ L LN+ GN++ LE
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLE 312
Score = 38.5 bits (90), Expect = 1e-04
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 19 QIKELNL-DNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI 75
++K L + + NL LS + LT++ L L L LS N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S ++L +L + L G ++ +E
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVE 288
Score = 38.2 bits (89), Expect = 2e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
C A+ T ++L + +L F P L LEL++N +S
Sbjct: 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76
Query: 83 QSSPKLAYLNLCGNRIKDLET 103
+ L L L NR+K +
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPL 97
Score = 36.2 bits (84), Expect = 9e-04
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDN 73
++ L L + R I FT L L+ +++ + L F +L L LE+ DN
Sbjct: 81 NLRTLGLRSNRLKLIPLGV--FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
+ L L L + + T
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Score = 32.8 bits (75), Expect = 0.012
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+K L + + I+ S +L+ L+ LTS+ L L L L I
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
+ + +L L + D T L+G
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Score = 32.4 bits (74), Expect = 0.016
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI 75
++ LNL + I E L+ + + L + F L L L +S N++
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRI 98
+ +V S L L L N +
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332
Score = 29.7 bits (67), Expect = 0.15
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+++E+ L + + L++L+ LT+L+ F + L L L N +
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 76 S 76
+
Sbjct: 333 A 333
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 40.2 bits (94), Expect = 4e-05
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG-- 58
NL + + L L + I++ F + L +++ L +L
Sbjct: 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLSSNHLHTLDEFL 107
Query: 59 FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
F +L AL L L +N I N + +L L L N+I
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Score = 38.7 bits (90), Expect = 1e-04
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
++ L+L + + S+ L++L N + + F ++ L +L LS N+I
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 76 S----GGLNVLQSSPKLAYLNLCGNRIKDL 101
S + PKL L+L N++K L
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 38.3 bits (89), Expect = 2e-04
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 20 IKELNLDNCRSTNIAALTSEF-----TNLKILSAINVGLTSL--KGFPELPALTRLELSD 72
L+L + N++ L +E+ TNL L + L + + F +P L L+LS
Sbjct: 41 TALLDLSH---NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
N + + L L L N I ++
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 39.6 bits (92), Expect = 6e-05
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRIS- 76
++ +N DN + + L T+L++LS N LT L PELP L L++S N +
Sbjct: 141 LLEYINADNNQ---LTMLPELPTSLEVLSVRNNQLTFL---PELPESLEALDVSTNLLES 194
Query: 77 ---GGLNVLQSSPKLAYLNLCGNRIKDL 101
+ S + NRI +
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHI 222
Score = 36.9 bits (85), Expect = 5e-04
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG 77
++ L+ + R ++ L +LK L N LT L PELPA L + +N+++
Sbjct: 101 SLEYLDACDNR---LSTLPELPASLKHLDVDNNQLTML---PELPALLEYINADNNQLT- 153
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + L L++ N++ L
Sbjct: 154 --MLPELPTSLEVLSVRNNQLTFL 175
Score = 34.6 bits (79), Expect = 0.003
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG 77
Q EL L+ +++ + + +L L SL PELPA L L+ DNR+S
Sbjct: 60 QFSELQLNRLNLSSLPD--NLPPQITVLEITQNALISL---PELPASLEYLDACDNRLS- 113
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + L +L++ N++ L
Sbjct: 114 --TLPELPASLKHLDVDNNQLTML 135
Score = 31.9 bits (72), Expect = 0.031
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTR----LELSDNRI 75
+ L++ N + + L +L+ L L SL +NRI
Sbjct: 163 EVLSVRNNQ---LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 76 SGGLNVLQSSPKLAYLNLCGNRIKDL 101
+ + S + L N +
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSR 245
Score = 26.1 bits (57), Expect = 2.8
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 32 NIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSS--PKLA 89
+ + ++ + SL + + L+L+ +S L + P++
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS----SLPDNLPPQIT 83
Query: 90 YLNLCGNRIKDL 101
L + N + L
Sbjct: 84 VLEITQNALISL 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 39.3 bits (92), Expect = 6e-05
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL 79
++ + L L N +T + G +L LT+L + N I+ L
Sbjct: 21 ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TL 79
Query: 80 NVLQSSPKLAYLNLCGNRIKDL 101
+ L + L YL N++ +L
Sbjct: 80 D-LSQNTNLTYLACDSNKLTNL 100
Score = 35.8 bits (83), Expect = 0.001
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
Q+ + CR + + T L +L G+T L + P L L L++ ++
Sbjct: 276 QLIYFQAEGCRKIKELDV-THNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTE- 332
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+ + + KL L+ I+D ++ +
Sbjct: 333 LD-VSHNTKLKSLSCVNAHIQDFSSVGKI 360
Score = 35.8 bits (83), Expect = 0.001
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ LN T I S T L L + LT L+ S N+I+
Sbjct: 128 LLTYLNCARNTLTEIDV--SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-E 184
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L+V Q + L LN N I L+
Sbjct: 185 LDVSQ-NKLLNRLNCDTNNITKLD 207
Score = 33.1 bits (76), Expect = 0.011
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
Q+ L+ T + S+ L L N LT L L L + I
Sbjct: 298 QLYLLDCQAAGITELDL--SQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQD- 353
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETL 104
+ + P L + +
Sbjct: 354 FSSVGKIPALNNNFEAEGQTITMPKE 379
Score = 33.1 bits (76), Expect = 0.011
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L+ I + T L A L L+ I+
Sbjct: 255 KLTTLHCIQTDLLEIDL--THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-E 311
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
L+ L +PKL YL L + +L
Sbjct: 312 LD-LSQNPKLVYLYLNNTELTEL 333
Score = 32.4 bits (74), Expect = 0.017
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
Q+ EL+ + + + T L L +T L + L RL N I+
Sbjct: 149 QLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK- 205
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L+ L + +L +L+ N++ +++
Sbjct: 206 LD-LNQNIQLTFLDCSSNKLTEID 228
Score = 31.6 bits (72), Expect = 0.034
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
Q+ L+ + T + S+ L L+ +T L + LT L+ S N+++
Sbjct: 171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLT-E 226
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
++ + +L Y + N + +L
Sbjct: 227 ID-VTPLTQLTYFDCSVNPLTEL 248
Score = 31.6 bits (72), Expect = 0.040
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 45 ILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ +A + T +L LT L+ ++ I+ + ++ L L N I L+
Sbjct: 24 VAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNITTLD 80
Score = 29.3 bits (66), Expect = 0.21
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ LN D T + ++ L L + LT + L LT + S N ++
Sbjct: 192 LLNRLNCDTNNITKLDL--NQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTE- 247
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLE 102
L+V KL L+ + +++
Sbjct: 248 LDVSTL-SKLTTLHCIQTDLLEID 270
Score = 28.9 bits (65), Expect = 0.26
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L D+ + TN+ + T L L+ LT L + P LT L + N ++
Sbjct: 86 NLTYLACDSNKLTNLDV--TPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLT-- 140
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + +L L+ N+ + P
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQ 169
Score = 28.9 bits (65), Expect = 0.33
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
++ L L+N T + S T LK LS +N + ++PAL ++ +
Sbjct: 319 KLVYLYLNNTELTELDV--SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376
Query: 77 ----GGLNVLQSSPKLAYLNLCGNRIK 99
N L + L+ GN +
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMN 403
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 39.2 bits (92), Expect = 8e-05
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS 76
++ L L + + I + S L+ L N L+ + G P+L L + L N I+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
Query: 77 -------GGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ ++L N + E
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Score = 38.5 bits (90), Expect = 1e-04
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG- 77
L + + T I L L + + +++ L RL L N+I
Sbjct: 175 NYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDL 101
L P L L+L N++ +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRV 256
Score = 35.8 bits (83), Expect = 0.001
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 16 GKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE--LPALTRLELSDN 73
G + + + N F LK L+ + + L G P+ L L L N
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHN 203
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+I L L KL L L N+I+ +E
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
++++L + I ++L L + + + F L + +E+ N +
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 77 GGL--NVLQSSPKLAYLNLCGNRIKDL 101
KL YL + ++ +
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGI 187
Score = 32.7 bits (75), Expect = 0.013
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRISG-GLNVL 82
C + A+ E + +L N ++ L+ F L L L L +N+IS
Sbjct: 39 QCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98
Query: 83 QSSPKLAYLNLCGNRIKDL 101
KL L + N + ++
Sbjct: 99 SPLRKLQKLYISKNHLVEI 117
Score = 30.0 bits (68), Expect = 0.11
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINV---GLTSL--KGFPELPALTRLELSDNR 74
L+L N + + +F L+ L A+ + ++ + K F L L +L +S N
Sbjct: 56 TTLLDLQNNDISELRK--DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 75 ISGGLNVLQSS--PKLAYLNLCGNRIKDLE 102
+ + + L L + NRI+ +
Sbjct: 114 LV----EIPPNLPSSLVELRIHDNRIRKVP 139
Score = 28.1 bits (63), Expect = 0.52
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 42 NLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIK 99
+L+++ ++GL ++ K P T L+L +N IS + + L L L N+I
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 100 DLE 102
+
Sbjct: 92 KIH 94
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 39.1 bits (92), Expect = 9e-05
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG-- 58
++ L F + + ++ L+L S L + + + G
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194
Query: 59 -FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
L L++S N S G+ L L +L++ GN++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Score = 33.0 bits (76), Expect = 0.012
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 22 ELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG----FPELPALTRLELSDNRIS 76
++L + + +A++S +L L ++ + + + G F +LT L+LS N +S
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113
Query: 77 GGL---NVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
G + L S L +LN+ N + +
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Score = 32.6 bits (75), Expect = 0.017
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 38 SEFTNLKILSAINVGLTSLKG-----FPELPALTRLELSDNRISGGL-NVLQSSPKLAYL 91
S +L L + + L L+G + L L L N ++G + + L + L ++
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 92 NLCGNRIKD 100
+L NR+
Sbjct: 496 SLSNNRLTG 504
Score = 31.4 bits (72), Expect = 0.039
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 38 SEFTNLKILSAINVGLTSLKG-FPE--LPALTRLELSDNRISGGL--NVLQSSPKLAYLN 92
+ L +N+ G P L +L L L++N+ +G + + + L L+
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 93 LCGNRI 98
L GN
Sbjct: 301 LSGNHF 306
Score = 30.6 bits (70), Expect = 0.066
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 40 FTNLKILSAINVGLTSLKG----FPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLC 94
+ L ++V + + AL L++S N++SG + + +L LN+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 95 GNRI 98
N+
Sbjct: 256 SNQF 259
Score = 30.6 bits (70), Expect = 0.068
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 38 SEFTNLKILSAINVGLTSLKG-FPE----LPALTRLELSDNRISGGL-NVLQSSPKLAYL 91
E +K L + + L G P L + LS+NR++G + + LA L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 92 NLCGNR 97
L N
Sbjct: 520 KLSNNS 525
Score = 30.3 bits (69), Expect = 0.096
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 38 SEFTNLKILSAINVGLTSLKG------FPELPALTRLELSDNRISGGL--NVLQSSPKLA 89
F + +L ++ + + G ++ L L+LS N SG L ++ S L
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 90 YLNLCGNRI 98
L+L N
Sbjct: 372 TLDLSSNNF 380
Score = 27.2 bits (61), Expect = 1.2
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 39 EFTNLKILSAINVGLTSLKG-FPE----LPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
+ L +++ L G F L L +S N+ G + L YL+L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSL 276
Query: 94 CGNRI 98
N+
Sbjct: 277 AENKF 281
Score = 26.8 bits (60), Expect = 1.5
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 38 SEFTNLKILSAINVGLTSLKG-----FPELPALTRLELSDNRISGGL-NVLQSSPKLAYL 91
+ L + N+ G F ++ L++S N +SG + + S P L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 92 NLCGNRI 98
NL N I
Sbjct: 662 NLGHNDI 668
Score = 26.8 bits (60), Expect = 1.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 62 LPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGNRI 98
L L LS N +SG + + L S KL L L N +
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Score = 26.8 bits (60), Expect = 1.6
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 37 TSEFTNLKILSAINVGLT-----SLKGFPELPALTRLELSDNRISGGL-NVLQSSPKLAY 90
+L+ LS T L G LT L+LS N G + S L
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 91 LNLCGNRI 98
L L N
Sbjct: 323 LALSSNNF 330
Score = 24.9 bits (55), Expect = 8.0
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 58 GFPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGNRI 98
L L L +N +G + L + +L L+L N +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 38.8 bits (91), Expect = 1e-04
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
++ L L N+ + S F L+ L+ +++ ++ + L L L+L N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Query: 74 RIS---------GGLNVLQSSPKLAYLNLCGNRIKDL 101
++ G + L+ L LNL N ++
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551
Score = 37.7 bits (88), Expect = 3e-04
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKI--LSAINVGLTSLKG-----FPELPALTRLELS 71
+K L+L N ++ F +L L +N+ + F L L L+L
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 72 DNRISGGLN--VLQSSPKLAYLNLCGNRIKDLE 102
N I L + + + L N+ L
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Score = 37.3 bits (87), Expect = 4e-04
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 15 MGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG------FPELPALTRL 68
+ + LNL + + I + F+ L L +++GL + + L + +
Sbjct: 378 LAHSPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 69 ELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
LS N+ N P L L L +K++++ F
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Score = 36.5 bits (85), Expect = 7e-04
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKGFPE-------LPALTRLEL 70
++ L L+N + ++ + +++ + L LT L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 71 SDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
S N ++ G + P+L Y L N I+ L
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Score = 35.7 bits (83), Expect = 0.001
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 19 QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI 75
Q+ L++ S L + LK+L+ + L+ L K F LT L L N I
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
N L L+L N + +
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTK 137
Score = 35.7 bits (83), Expect = 0.001
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 19 QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG-----FPELPALTRLELSD 72
++ L+L + E+ L+ + I + F +P+L RL L
Sbjct: 406 HLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 73 NRISG---GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + Q L L+L N I ++
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Score = 35.7 bits (83), Expect = 0.001
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 19 QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDNRI 75
+ EL+L + + NL L + GL+S K +L L L LS+N+I
Sbjct: 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157
Query: 76 SG---GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ ++ L L L N+IK+
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFS 187
Score = 34.6 bits (80), Expect = 0.003
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 41 TNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNR 97
++L IL+ + G + + F +L L ++L N ++ +V + L LNL N
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595
Query: 98 IKDL--ETLEPLFGS 110
I + + P F +
Sbjct: 596 ITSVEKKVFGPAFRN 610
Score = 34.2 bits (79), Expect = 0.005
Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFP-----ELPALTRLELSDN 73
++EL L N + + + + L + + +K F + L L L++
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 74 RISG----GLNVLQSSPKLAYLNLCGNRIKDL 101
++ L + ++ + L+L +++
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Score = 33.4 bits (77), Expect = 0.008
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 19 QIKELNLDNCRSTNIAALT---SEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDN 73
I+ L+L N + + + T ++TNL +L L + F LP L L N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIK 99
I + L + YLNL + K
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Score = 32.7 bits (75), Expect = 0.014
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
+C + + + TN+ +L+ + L L F LT L++ N IS +
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69
Query: 83 QSSPKLAYLNLCGNRIKDL 101
Q P L LNL N + L
Sbjct: 70 QKLPMLKVLNLQHNELSQL 88
Score = 30.7 bits (70), Expect = 0.071
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 42 NLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRI 98
+ S L + F L L L + DN I G N+ L YL+L +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 99 K 99
Sbjct: 366 S 366
Score = 28.0 bits (63), Expect = 0.55
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDNRISGG---LNVLQS--SPK 87
F LK L +N+ + G L L L LS++ S S
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382
Query: 88 LAYLNLCGNRIKDLE 102
L LNL N+I +E
Sbjct: 383 LHILNLTKNKISKIE 397
Score = 25.0 bits (55), Expect = 7.1
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNR 97
+ ++ ++ LT + +LP +T L L+ N++ +L L++ N
Sbjct: 3 TVSHEVADCSHLKLTQVP--DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 98 IKDLE 102
I LE
Sbjct: 61 ISKLE 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 38.8 bits (91), Expect = 1e-04
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ L ++ L +LK L N L +L P P L L +S+N++
Sbjct: 92 HLESLVASCN---SLTELPELPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE-K 145
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
L LQ+S L +++ N +K L
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKL 168
Score = 37.3 bits (87), Expect = 4e-04
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ + DN + L +L+ + A N L L LP LT + +N +
Sbjct: 196 FLTAIYADNNS---LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-- 250
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETL 104
+ P L LN+ N + DL L
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDLPEL 275
Score = 36.9 bits (86), Expect = 6e-04
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+K +++DN + L +L+ ++A N L L LP LT + +N +
Sbjct: 154 FLKIIDVDNNS---LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-- 208
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L + N +++L L+ L
Sbjct: 209 -KLPDLPLSLESIVAGNNILEELPELQNL 236
Score = 34.6 bits (80), Expect = 0.004
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+K L +DN ++ L L+ L N L L L +++ +N +
Sbjct: 112 SLKSLLVDNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-- 166
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ P L ++ N++++L L+ L
Sbjct: 167 -KLPDLPPSLEFIAAGNNQLEELPELQNL 194
Score = 33.8 bits (78), Expect = 0.006
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
Q EL L+N +++L +L+ L A LT L + L +L + +S
Sbjct: 72 QAHELELNNL---GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS- 127
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
P L YL + N+++ L L+
Sbjct: 128 -----DLPPLLEYLGVSNNQLEKLPELQNS 152
Score = 33.4 bits (77), Expect = 0.008
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L++ + L+ NL L+A + + SL P+L L +S+N++
Sbjct: 278 SLTFLDVSENIFSG---LSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLI-- 330
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
+ P+L L N + ++
Sbjct: 331 -ELPALPPRLERLIASFNHLAEV 352
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 21/99 (21%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
++ELN+ N + + L + L+ L A L + L +L + N +
Sbjct: 318 SLEELNVSNNK---LIELPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREF 372
Query: 77 ----GGLNVLQSS----------PKLAYLNLCGNRIKDL 101
+ L+ + L L++ N +++
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411
Score = 31.9 bits (73), Expect = 0.030
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ LN + I +L +L+ L+ N L L P L RL S N ++
Sbjct: 298 NLYYLNASSNE---IRSLCDLPPSLEELNVSNNKLIEL--PALPPRLERLIASFNHLA-- 350
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETL 104
V + L L++ N +++ +
Sbjct: 351 -EVPELPQNLKQLHVEYNPLREFPDI 375
Score = 30.3 bits (69), Expect = 0.11
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ + N + L L + A N L +L P+L L + DN ++
Sbjct: 216 SLESIVAGNNILEELPEL-QNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDL 272
Query: 79 LNVLQSSPKLAYLNLCGNRIKDL 101
+ QS L + + +L
Sbjct: 273 PELPQSLTFLDVSENIFSGLSEL 295
Score = 28.8 bits (65), Expect = 0.37
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLN 80
K+L+++ + +L++ N L + L +L + N +
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRM----NSHLAEV--PELPQNLKQLHVETNPLR---E 410
Query: 81 VLQSSPKLAYLNLCGNRIKDLETLEP 106
+ L + R+ D
Sbjct: 411 FPDIPESVEDLRMNSERVVDPYEFAH 436
Score = 26.9 bits (60), Expect = 1.4
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+++L +++ ++A + NLK L L ++ L ++ R+
Sbjct: 378 SVEDLRMNS----HLAEVPELPQNLKQLHVETNPLREFP--DIPESVEDLRMNSERVVDP 431
Query: 79 LNV-LQSSPKLAYLNLCGNRI 98
+++ KL +
Sbjct: 432 YEFAHETTDKLEDDVFEHHHH 452
Score = 25.7 bits (57), Expect = 3.9
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
+ L S+N+ + E N+K + + + + E++ +R+
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDL 101
L+ + L L + L
Sbjct: 68 CLD-----RQAHELELNNLGLSSL 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 38.4 bits (90), Expect = 1e-04
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 19 QIKELNL-DNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNR 74
+++L+L DN + ++ T L L GL L F L AL L L DN
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 75 ISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ + + L +L L GNRI +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Score = 36.1 bits (84), Expect = 8e-04
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDN 73
++ L L + + T F +L L+ + + ++S+ F L +L RL L N
Sbjct: 130 ALQYLYLQDNALQALPDDT--FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 74 RISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
R++ + + +L L L N + L
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
+C + A+ + + ++ + F LT L L N ++
Sbjct: 17 SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 83 QSSPKLAYLNLCGNRIKDLETLEP 106
L L+L N L +++P
Sbjct: 77 TGLALLEQLDLSDNA--QLRSVDP 98
Score = 25.7 bits (57), Expect = 3.3
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDN 73
+ L L R ++ + L L L++L L AL L L+DN
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 38.0 bits (89), Expect = 2e-04
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNR 74
+++L ++ LK L+ + + S K F L L L+LS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 75 IS----GGLNVLQSSPKLAY-LNLCGNRIKDLE 102
I L VL P L L+L N + ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Score = 36.5 bits (85), Expect = 6e-04
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+++ L+L C I ++L L + SL F L +L +L + +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
+ + L LN+ N I+ +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Score = 34.6 bits (80), Expect = 0.003
Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISG-GLNVL 82
C N + + K L L L F P L L+LS I
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 83 QSSPKLAYLNLCGNRIKDL 101
QS L+ L L GN I+ L
Sbjct: 73 QSLSHLSTLILTGNPIQSL 91
Score = 29.2 bits (66), Expect = 0.24
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 52 GLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ P + L+LS N + G S P+L L+L I+ +E
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Score = 24.9 bits (55), Expect = 5.7
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLT----SLKGFPE----LPALTRLEL 70
++ L+L + + +I L + +N+ L + L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 71 SDNRISG-GLNVLQSSPKLAYLNLCGN 96
N++ + L + L N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 38.3 bits (89), Expect = 2e-04
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKGFPELPALTRLELSDNRI 75
+I+ + A ++ + L ++ + L+ F LT L+L N+I
Sbjct: 549 KIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + ++ L N++K +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Score = 33.7 bits (77), Expect = 0.006
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+++ + N T + + L LT +EL +
Sbjct: 449 KLQIIYFANSPFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
Query: 79 L-NVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
L + L P+L LN+ NR L+ +
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Score = 33.3 bits (76), Expect = 0.009
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 19 QIKELNLDNCRSTNI-----AALTSEFTNLKILSAINVGLTSLKGFPE------LPALTR 67
I + L N T+I + N +L+ I++ L + LP L+
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757
Query: 68 LELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
+++S N S +S +L + R
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788
Score = 30.6 bits (69), Expect = 0.072
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE------LPALTRLELS 71
+++ +L LD + I + + LK P + + ++ S
Sbjct: 595 VKLTDLKLDYNQIEEIPE--DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652
Query: 72 DNRISG------GLNVLQSSPKLAYLNLCGNRIKDL 101
N+I + + L N I+
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Score = 30.6 bits (69), Expect = 0.080
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE--------------LPA 64
+ ++ L NC N+ L +L L ++N+ + P
Sbjct: 492 DLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 65 LTRLELSDNRISG--GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + N + LQ KL L+ N+++ LE
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN 594
Score = 30.2 bits (68), Expect = 0.11
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 18 IQIKELNLDNCR-STNIAALTSEFTNLKILS---------AINVGLTSLKGFPELPALTR 67
I + L L + + + + N + LT
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 68 LELSDNRISGGLNVLQSS--PKLAYLNLCGNRIKDL 101
++L N+++ + +++ P L+ +++ N
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 29.8 bits (67), Expect = 0.14
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILS-------AINVGLTSL-KGFPELPALTRLEL 70
+ +++ ++ + LK N L G P+L +L++
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 71 SDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
N I L +P+L L++ N ++
Sbjct: 814 GSNDIRKVDEKL--TPQLYILDIADNPNISID 843
Score = 29.1 bits (65), Expect = 0.25
Identities = 9/99 (9%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 19 QIKELNLDNCR------STNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLEL 70
+ ++ + + + + + N ++ + + F ++ + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 71 SDNRIS--------GGLNVLQSSPKLAYLNLCGNRIKDL 101
S+N ++ +++ L ++L N++ L
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Score = 27.9 bits (62), Expect = 0.68
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG----LTSL-KGFPELPALTRLELSDN 73
+ + ++ + ++NLK L+ + + +T L +LP L L ++ N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525
Query: 74 RISGGLNVLQSS----------PKLAYLNLCGNRIKDL 101
R + PK+ + N +++
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 38.0 bits (89), Expect = 2e-04
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
I+ L+ N + ++ K + N +T L+ + L+L N I
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 77 G--GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ SS L +LNL N I D++
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190
Score = 38.0 bits (89), Expect = 2e-04
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 19 QIKELNLDNCRSTNI--AALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+++ L+L + A L + L+ L+ + +KG L L+LS N+++
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
QS+ + +++L N++ +E
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIE 230
Score = 37.7 bits (88), Expect = 2e-04
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 19 QIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ K + + A+L N+K L L+ + L L LS N +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 76 SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+S L L+L N +++L +
Sbjct: 71 Y-ETLDLESLSTLRTLDLNNNYVQELLVGPSI 101
Score = 34.6 bits (80), Expect = 0.003
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+++ LNL + + +L L +++ ++ P++ L ++N IS
Sbjct: 59 KLELLNLSSNVLYET----LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
+ Q + L N+I L L+
Sbjct: 115 SCSRGQG---KKNIYLANNKITMLRDLD 139
Score = 32.7 bits (75), Expect = 0.016
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
++K L+L + + + + +S N L + K L +L N
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
G S + +K L +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Score = 30.7 bits (70), Expect = 0.076
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 59 FPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGNRIKDLE 102
+++D+ + L ++ QS+ + L+L GN + +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS 50
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 38.1 bits (89), Expect = 2e-04
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 19 QIKELNLDNCR-STNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L + S ++L+ L A+ L SL+ L L L ++ N I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 76 SGGL--NVLQSSPKLAYLNLCGNRIKDLE 102
+ L +L+L N+I+ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 37.7 bits (88), Expect = 2e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRI 75
+K L+L +++ L+ L + L + F L L L++S
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 76 SGGLN-VLQSSPKLAYLNLCGNRIKDL 101
N + L L + GN ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Score = 37.3 bits (87), Expect = 4e-04
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+ L L NC+ T + +LK L+ + + +LP+L L+LS N +S
Sbjct: 305 GWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 78 --GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ L YL+L N + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMS 389
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRLELSDN 73
Q++ L+ + ++ S F +L+ L +++ T + L +L L+++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 74 RISGGL--NVLQSSPKLAYLNLCGNRIKDL 101
++ L +L+L +++ L
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Score = 34.2 bits (79), Expect = 0.004
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE----LPALTRLELSDNRIS 76
K L + + N + + +L+ L GL+ + +L L+LS N +
Sbjct: 328 KRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
+ +L +L+ + +K +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Score = 33.8 bits (78), Expect = 0.006
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 2 NSNLPFFEPDT-ERMGKIQIKELNLD--NCRSTNIAALTSEFTNLKILSAINVGLTSLKG 58
NL F+ E + + I+E L + +I L + TN+ S ++V + +K
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 59 FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
F LEL + + L+S +L + + G L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Score = 33.5 bits (77), Expect = 0.009
Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
C N + + K L L L F P L L+LS I
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 83 QSSPKLAYLNLCGNRIKDLE 102
QS L+ L L GN I+ L
Sbjct: 73 QSLSHLSTLILTGNPIQSLA 92
Score = 32.7 bits (75), Expect = 0.017
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 19 QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNR 74
++ L + + + +E NL L L L F L +L L +S N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 75 ISGGL-NVLQSSPKLAYLNLCGNRIK--DLETLEPLFGS 110
+ L L+ N I + L+ S
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544
Score = 24.6 bits (54), Expect = 9.9
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPA--------LTRLE 69
I++ +L L N + + + + L L + L + L L L
Sbjct: 200 IRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 70 LSDNRIS-------GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFG 109
+ + R++ +++ ++ +L I+ ++ FG
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 36.6 bits (84), Expect = 6e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 41 TNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGN 96
NL L L L+ L L L + + + + +P+L+ LNL N
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90
Query: 97 RIKDLE 102
++ L
Sbjct: 91 ALESLS 96
Score = 36.6 bits (84), Expect = 7e-04
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 53 LTSLKGFPELPALTRLELSDNRISGGL--NVLQSSPKLAYLNLCGNRIKDLE 102
L SL P LT L + + + L L+ +L L + + ++ +
Sbjct: 21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Score = 34.3 bits (78), Expect = 0.004
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSE----FTNLKILSAINVGLTSL--KGFPELPALTRLELSD 72
+ EL ++N + ++ L L+ L+ + GL + F P L+RL LS
Sbjct: 32 NLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 73 NRISGGLNVLQSSPKLAYLNLCGNRI 98
N + L L L GN +
Sbjct: 90 NALESLSWKTVQGLSLQELVLSGNPL 115
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 36.5 bits (85), Expect = 6e-04
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 20 IKELNLDNCRSTNIAALT-SEFTNLKILS-AINVGLTSLKG--FPELPALTRLELSDNRI 75
+ L L I + S N+ + +I+V L L+ F L +T +E+ + R
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 76 SGGL--NVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
+ + L+ P L +L + +K L ++ +
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Score = 31.5 bits (72), Expect = 0.029
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 19 QIKELNLD-NCRSTNIAALTSEFTNLKILSAI----NVGLTSLKG--FPELPALTRLELS 71
I + + + + + + F NL ++ I LT + ELP L L +
Sbjct: 56 NISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 72 DNRIS--GGLNVLQSSPKLAYLNLCGN 96
+ + L + S+ L + N
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDN 140
Score = 30.4 bits (69), Expect = 0.078
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 27 NCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGL--NVL 82
+I + S + + L I L ++ F LP ++R+ +S + L +
Sbjct: 17 RVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 83 QSSPKLAYLNLCGNRIKDLETLEP 106
+ K+ ++ + R +L ++P
Sbjct: 77 YNLSKVTHIEIRNTR--NLTYIDP 98
Score = 25.3 bits (56), Expect = 4.1
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 19 QIKELNLDNCRS-TNIAALTSEFTNLKILSAINVGLTSLKGFPELPA------LTRLELS 71
++ + + N R+ T I L +L + + T LK FP+L LE++
Sbjct: 81 KVTHIEIRNTRNLTYIDPDA--LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138
Query: 72 DNRISGGL--NVLQS-SPKLAYLNLCGNRIKDLE 102
DN + N Q + L L N ++
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 36.4 bits (84), Expect = 7e-04
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 19 QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS 76
+++ L+L + N A L + L+ L+ + +KG L L+LS N+++
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
QS+ + +++L N++ +E
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIE 230
Score = 36.0 bits (83), Expect = 0.001
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 19 QIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+ K + + A+L N+K L L+ + L L LS N +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 76 SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L+S L L+L N +++L +
Sbjct: 71 Y-ETLDLESLSTLRTLDLNNNYVQELLVGPSI 101
Score = 35.2 bits (81), Expect = 0.002
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS 76
I+ L+ N + ++ S K + N +T L + L+L N I
Sbjct: 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 77 G--GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ SS L +LNL N I D++
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190
Score = 32.1 bits (73), Expect = 0.021
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
+++ LNL + + +L L +++ ++ P++ L ++N IS
Sbjct: 59 KLELLNLSSNVLYET----LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
+ Q + L N+I L L+
Sbjct: 115 SCSRGQG---KKNIYLANNKITMLRDLD 139
Score = 30.6 bits (69), Expect = 0.081
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 1/93 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
++K L+L + + + + +S N L + K L +L N
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
G S + +K L +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Score = 29.0 bits (65), Expect = 0.27
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 59 FPELPALTRLELSDNRISGGL-NVLQSSPKLAYLNLCGNRIKDLE 102
+++D+ + L ++ QS+ + L+L GN + +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS 50
Score = 27.1 bits (60), Expect = 1.1
Identities = 7/109 (6%), Positives = 19/109 (17%), Gaps = 6/109 (5%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTS----EFTNLKILSAINVGLTSLK 57
+ + E + C + +LS L+
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 58 -GFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETL 104
++ + V L + + +
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 36.3 bits (84), Expect = 8e-04
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 20 IKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS 76
+K L+L N R T I+ NL+ L + G+ +++ F L +L L+LS N +S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 77 G-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + L +LNL GN K L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL 139
Score = 35.9 bits (83), Expect = 0.001
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG----LTSL--KGFPELPALTRLELSD 72
+ LNL + TS F++L L + VG T + K F L L LE+
Sbjct: 125 SLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ + L+S +++L L + L
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Score = 33.9 bits (78), Expect = 0.005
Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLK----------GFPELPALTR 67
+ L L + + + ++++ L + L + +
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 68 LELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
++++D + + +L L L N++K +
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Score = 31.6 bits (72), Expect = 0.029
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLKG--FPELPALTRLELSDNRI 75
+EL +D + + +++ +S + + L ++ LEL D +
Sbjct: 177 EELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Query: 76 ---------SGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
+G N L + + + + L
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272
Score = 31.6 bits (72), Expect = 0.036
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 50 NVGLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
+ L S+ G A+ L+LS+NRI+ + LQ L L L N I +E
Sbjct: 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92
Score = 30.9 bits (70), Expect = 0.062
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 15 MGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSD 72
+ K + + + + + L ++ + L L L S+ F L +L ++ L
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 73 N 73
N
Sbjct: 311 N 311
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 36.0 bits (83), Expect = 0.001
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 19 QIKELNLDNCRSTNIAALTSEF-----TNLKILSAINVGLTSL--KGFPELPALTRLELS 71
+ LNL N A +E LK+LS + + PAL+ L+LS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181
Query: 72 DNRISGGLNVLQSS-----PKLAYLNLCGNRIKDLETLEP 106
DN G ++ + P L L L ++ +
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221
Score = 29.9 bits (67), Expect = 0.13
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 19 QIKELNLDNCR---STNIAALTSEFTNLKILSAINVGLTSLKGFPE------LPALTRLE 69
++EL L+N + L + +L IL+ NV + + P L L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 70 LSDNRISGG-LNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
++ ++ P L+ L+L N L
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
Score = 27.2 bits (60), Expect = 1.0
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 19 QIKELNLDNCR----STNIAALTSEFTNLKILSAINVGLTSL---KGFPELPALTRLELS 71
++ L L N S +AL + L+ L + L L L LS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 72 DNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L KL+ L+L NR+ + + L
Sbjct: 262 FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDEL 295
Score = 26.8 bits (59), Expect = 1.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPE--LPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG 95
L+++N+ T LK P+ L+ L+LS NR+ P++ L+L G
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKG 305
Query: 96 NRIKDLE 102
N D E
Sbjct: 306 NPFLDSE 312
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 35.8 bits (83), Expect = 0.001
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 21 KELNLDNCRSTNIAALT------SEFTNLKILSAINVGLTSLKGFPE------LPALTRL 68
+ +N+ R + L ++ + + I +G +LK FP + L L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 69 ELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
E N++ G L S KLA LNL N+I ++
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368
Score = 31.2 bits (71), Expect = 0.048
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE----LPALTRLELSDNR 74
+I+ + + TS +K L + L+G L L L+ N+
Sbjct: 306 KIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 75 ISGGL-NVLQSSPKLAYLNLCGNRIKDL 101
I+ N + ++ L+ N++K +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 31.2 bits (71), Expect = 0.057
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPE--LPALTRLELSDNRISGG-LNVLQSSPKLAYLNLC 94
T L+ + +G ++ E P ++ L++ DN L+ + + L
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
Query: 95 GNRIKDLETLEPL 107
++ +D+ + L
Sbjct: 620 YDKTQDIRGCDAL 632
Score = 30.4 bits (69), Expect = 0.093
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 19 QIKELNLDNCRSTNIAA-----LTSEFTNLKILSAINVGLTSLKGFPE------LPALTR 67
+ +NL T I F N +L++I++ L + LP L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 68 LELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
++LS N S +S L + R
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Score = 28.9 bits (65), Expect = 0.36
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 21 KELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSL---KGFPELPALTRLELSDNRIS 76
LNL + T I A ++ LS + L + + ++ ++ S N I
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 77 GGLNVLQSS--------PKLAYLNLCGNRI 98
++ +NL N+I
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Score = 28.9 bits (65), Expect = 0.37
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGL- 79
++ + N A E + T + L LT +E+ + L
Sbjct: 209 RQFYMGNSPFV--AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266
Query: 80 NVLQSSPKLAYLNLCGNRIKDLETLEPLFGS 110
L++ P++ +N+ NR E L+ + +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Score = 28.1 bits (63), Expect = 0.53
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 19 QIKELNLDNCR-----STNIAALTSEFTNLKILSAINVGLTSLKGFPE-----LPALTRL 68
+ ++ N L +S+IN+ + FP+ L+ +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462
Query: 69 ELSDNRISG--------GLNVLQSSPKLAYLNLCGNRIKDL 101
L N ++ +++ L ++L N++ L
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503
Score = 26.9 bits (60), Expect = 1.5
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 30 STNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISGG-------LNV 81
+I + + ++ +T + K L L + + ++
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231
Query: 82 LQSSPKLAYLNLCGNRIKDLETLE 105
+ + + +L + +KDL +E
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVE 255
Score = 25.0 bits (55), Expect = 6.0
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 20 IKELNLDNCRSTNIAALTSEFTNLKILSAINV-GLTSLKGFPE----LPALTRLELSDNR 74
+ N + + ++ NLK L+ + V +L P LP + + ++ NR
Sbjct: 227 WENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284
Query: 75 ISGGLNVLQSSPKLAYLNLCGN 96
G + LA +
Sbjct: 285 GISGEQLKDDWQALADAPVGEK 306
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 35.6 bits (82), Expect = 0.001
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 19 QIKELNLDNCRS-TNIAALTSEFTNLKILSAINVGLTSLKGFPEL----PALTRLELSDN 73
++ L+L + + + +++LS G + G + +L +LE+ D
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDC 491
Query: 74 RIS--GGLNVLQSSPKLAYLNLCGNRIKD 100
L + L + +
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSF 520
Score = 32.9 bits (75), Expect = 0.013
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 19 QIKELNLDNCRS-------TNIAALTSEFTNLKILSAI-NVGLTSLKG-FPELPALTRLE 69
Q++EL + + ++ S L+ LS + L + LT L
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295
Query: 70 LSDNRIS--GGLNVLQSSPKLAYLNLCGN 96
LS + + +L PKL L +
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
Score = 29.9 bits (67), Expect = 0.15
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELP--ALTRLELSDNRISGG 78
+++ + NC + + A + F ++ + LKG P L
Sbjct: 46 RKVFIGNCYAVSPATVIRRFPKVRSV--------ELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 79 LNVLQSSPKLAYLNLCGNRIKD 100
+ S L + L + D
Sbjct: 98 EAMSSSYTWLEEIRLKRMVVTD 119
Score = 28.3 bits (63), Expect = 0.51
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 19 QIKELNLDNCRS---TNIAALTSEFTNLKILS-----AINVGLTSLKGFPE-LPALTRLE 69
K L L +C +AA+ + NLK L +V L FP+ +L L
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Query: 70 LSDNRI----SGGLNVLQSSPKLAYLNLCG 95
+S S ++ P L L L
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNR 220
Score = 26.0 bits (57), Expect = 3.3
Identities = 17/109 (15%), Positives = 26/109 (23%), Gaps = 16/109 (14%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTN--LKILSAINVGLTSL--------KGFPEL----PA 64
+ L LT E + + L L K F +
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457
Query: 65 LTRLELSDNRIS--GGLNVLQSSPKLAYLNLCGNRIKDLETLEPLFGST 111
+ L ++ S G +VL L L + D L
Sbjct: 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 35.0 bits (81), Expect = 0.002
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSL--KGFPELPALTRLELSDNRI 75
EL L+N T + A T F L L IN +T + F + + L+ NR+
Sbjct: 35 AELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + L L L NRI +
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCV 120
Score = 30.0 bits (68), Expect = 0.12
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
Q++++N N + T+I + + + + L +++ F L +L L L NRI
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIK 99
+ G + + L+L N+I
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQIT 142
Score = 29.2 bits (66), Expect = 0.22
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 52 GLTSL-KGFPELPALTRLELSDNRISG--GLNVLQSSPKLAYLNLCGNRIKDLE 102
L + + P L L++N + + + P+L +N N+I D+E
Sbjct: 22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE 73
Score = 28.1 bits (63), Expect = 0.53
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRIS----GGLNVLQSSPKLAYLNLC 94
+LK L + +T + F L ++ L L DN+I+ G + L L+ LNL
Sbjct: 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL---HSLSTLNLL 161
Query: 95 GN 96
N
Sbjct: 162 AN 163
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 35.2 bits (81), Expect = 0.002
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 19 QIKELNL-DNCRSTNIAALTSEFTNLKILSAINVGLTSL----KGFPELPALTRLELSDN 73
L+ +N + + T L+ L L L + ++ +L +L++S N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Query: 74 RISGGLN--VLQSSPKLAYLNLCGNRIKDL 101
+S + L LN+ N + D
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Score = 34.1 bits (78), Expect = 0.005
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 19 QIKELNLDNCRSTNIAALTS----EFTNLKI--LSAINVGLTSLKGFPELPALTRLELSD 72
+K L++ S S F+N+ I + + + ++ L+ S+
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333
Query: 73 NRISGG-LNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
N ++ +L L L N++K+L + +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Score = 30.6 bits (69), Expect = 0.087
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSEF---TNLKILSAINVGLTSLKG---FPELPALTRLELSD 72
+++ L L + ++ + +L+ L ++ + +L L +S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 73 NRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
N ++ + P++ L+L N+IK +
Sbjct: 409 NILTDTI-FRCLPPRIKVLDLHSNKIKSIP 437
Score = 29.8 bits (67), Expect = 0.13
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 52 GLTSLKGFPELPA-LTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
GL + +L T L +S N IS + + S KL L + NRI+ L+
Sbjct: 11 GLIHV--PKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Score = 27.9 bits (62), Expect = 0.64
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 38 SEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCG 95
+ L+IL + + L F L L+LS N++ ++ + L +L+L
Sbjct: 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS-CHPTVNLKHLDLSF 99
Query: 96 NRIKDL 101
N L
Sbjct: 100 NAFDAL 105
Score = 27.9 bits (62), Expect = 0.68
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
+ LN+ + T+ +K+L + + S+ K +L AL L ++ N++
Sbjct: 400 SLLSLNMSSNILTDTIF-RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Query: 78 -GLNVLQSSPKLAYLNLCGN 96
+ L + L N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478
Score = 27.9 bits (62), Expect = 0.71
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 41 TNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKD 100
+L L+ + LT P + L+L N+I + L LN+ N++K
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Query: 101 L 101
+
Sbjct: 459 V 459
Score = 26.8 bits (59), Expect = 1.8
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG---FPELPALTRLELSDNRI 75
+++ L+L + + I+ NLK L +L F + L L LS +
Sbjct: 70 ELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 76 -SGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ + L + G + E E L
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 34.4 bits (79), Expect = 0.003
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 12 TERMGKIQIKELNLDNCRSTNIA-ALTSEFTNLKILSAINV------GLTSLKGFPELP- 63
T + K +I+ ++ + +I ++ + L L L
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 64 ALTRLELSDN-RIS-GGLNVLQSSPKLAYLNLCG-NRIKDLE 102
++ +E+ ++ G+ L L YL L +K+ E
Sbjct: 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156
Score = 27.1 bits (60), Expect = 0.94
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 19 QIKELNLDNCRS---------TNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLE 69
++++ L C + + L ++I+S NV + L L
Sbjct: 86 YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLF 145
Query: 70 LSD-NRIS-GGLNVLQSSPKLAYLNL 93
LSD + V L L L
Sbjct: 146 LSDLPGVKEKEKIVQAFKTSLPSLEL 171
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 34.0 bits (79), Expect = 0.004
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS- 76
+ +L T + A E L I LT L ELP ++L+ ++
Sbjct: 74 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQ 133
Query: 77 -----GGLNVLQSSPKLAYLNLCGNRIKDL 101
G L P + + DL
Sbjct: 134 LKAAVGEL------PDQSKQQQIYQELTDL 157
Score = 33.6 bits (78), Expect = 0.005
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRIS- 76
+ +L T + A E L I LT L ELP ++L+ ++
Sbjct: 28 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR 87
Query: 77 -----GGLNVLQSSPKLAYLNLCGNRIKDL 101
G L P+ + L + +L
Sbjct: 88 LKAAVGEL------PEKSKLQEIYQELTEL 111
Score = 25.9 bits (58), Expect = 2.4
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
ELP ++L+ ++ + P+ + L + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 34.2 bits (79), Expect = 0.004
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI-S 76
K+L+L + + +++ + T L++L + L +L F EL L L ++DN++ +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
+ V LA L L N++K L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLP 125
Score = 33.4 bits (77), Expect = 0.008
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI 75
+++ L L++ + + A E NL+ L + L +L F +L L L L N++
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDL 101
V S KL YL+L N ++ L
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSL 148
Score = 31.5 bits (72), Expect = 0.030
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISG-GLNVL 82
+C S + A+ S + K L + L+SL F L L L L+DN++ +
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 83 QSSPKLAYLNLCGNRIKDL 101
+ L L + N+++ L
Sbjct: 82 KELKNLETLWVTDNKLQAL 100
Score = 28.8 bits (65), Expect = 0.34
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI-SGGLNVLQSSPKLAYLNLCGNR 97
T L LS L SL F +L +L L L +N++ +L L L N+
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 98 IKDL 101
+K +
Sbjct: 193 LKRV 196
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 65 LTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLET 103
+L+L N++S KL L L N+++ L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Score = 24.9 bits (55), Expect = 6.4
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDN 73
+KEL L N + + + T LK L N L + F L L L+L +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.5 bits (77), Expect = 0.006
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 5 LPFFEPDTERMGKIQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSL------ 56
L + + ++ + R N + F + ++L + + +
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205
Query: 57 ----KGFPELPALTRLELSDNRIS--GGL---NVLQSSPKLAYLNLCGNRIKD 100
+G L L+L DN + G L+S P L L L +
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258
Score = 29.3 bits (66), Expect = 0.20
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 22/108 (20%)
Query: 15 MGKIQIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSL---------KGFPELP 63
M + I+ +L T ++ + + I + ++ +
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 64 ALTRLELSDNRISGG-----------LNVLQSSPKLAYLNLCGNRIKD 100
L E SD L L PKL + L N
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108
Score = 28.9 bits (65), Expect = 0.28
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 18/88 (20%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG 77
++ + + + E L L + + P L + LSDN
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPE------------ALRLLLQALLKCPKLHTVRLSDNAFGP 108
Query: 78 G-----LNVLQSSPKLAYLNLCGNRIKD 100
++ L L +L L N +
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGP 136
Score = 28.1 bits (63), Expect = 0.62
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
++EL L++C + A ++ A + E L L L N I
Sbjct: 245 NLRELGLNDCLLSARGAA-------AVVDAFSKL--------ENIGLQTLRLQYNEIELD 289
Query: 78 GLNVLQSS-----PKLAYLNLCGNRIKD 100
+ L++ P L +L L GNR +
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSE 317
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 33.5 bits (77), Expect = 0.007
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 53 LTSL--KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDL 101
+ + F L R++LS+N+IS + Q L L L GN+I +L
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Score = 30.0 bits (68), Expect = 0.13
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 52 GLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
GLT + P +T + L N I KL ++L N+I +L
Sbjct: 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Score = 27.7 bits (62), Expect = 0.60
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI 75
+++ ++L N + + +A +L L +T L F L +L L L+ N+I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 76 SG-GLNVLQSSPKLAYLNLCGNRIKDL--ETLEPL 107
+ ++ Q L L+L N+++ + T PL
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Score = 26.9 bits (60), Expect = 1.2
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRI-SGGLNVLQSSPKLAYLNLCGN 96
+L++L + L+ F +L L L L DN++ + + ++L N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 32.9 bits (75), Expect = 0.012
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 27 NCRSTNIAALTSE-FTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGL--NV 81
C+ + + + S+ N L + L + F L ++E+S N + + +V
Sbjct: 15 LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74
Query: 82 LQSSPKLAYLNLC-GNRIKDLE 102
+ PKL + + N + +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYIN 96
Score = 30.6 bits (69), Expect = 0.089
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVG----LTSL--KGFPELPALTRLELSD 72
++++ + + F+NL L I + L + + F LP L L +S+
Sbjct: 55 DLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGN 96
I S + L++ N
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDN 138
Score = 29.4 bits (66), Expect = 0.19
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNL-KILSAINVGLTSLKG-- 58
N N+ E ++ + L L+ I T L ++ + N L L
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 59 FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
F L++S RI L++ KL + +K L TLE L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKL 245
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 32.4 bits (74), Expect = 0.015
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 21 KELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSL--KGFPELPALTRLELSDNRI-S 76
++L+L + ++ T T L L+ L +L F +L L L L++N++ S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLE 102
L V +L L L GN++K L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLP 123
Score = 29.7 bits (67), Expect = 0.16
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 10 PDTERMGKIQIKELNLDNCRSTNI-AALTSEFTNLKILSAINVGLTSLKG--FPELPALT 66
D G ++ LNLD + + A + + T L L N L SL F L L
Sbjct: 51 SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110
Query: 67 RLELSDNRISGGLNVLQSSP--------KLAYLNLCGNRIKDL 101
+L L N+ L+S P KL L L N+++ +
Sbjct: 111 KLYLGGNQ-------LKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Score = 24.7 bits (54), Expect = 7.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 41 TNLKILSAINVGLTSL-KG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
T LK L L S+ G F +L L L LS N+ LQS P A+ L
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-------LQSVPHGAFDRL 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 32.6 bits (73), Expect = 0.016
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 42 NLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGN 96
+ NV + LP L +++S ++ L+ + L ++N+ N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Query: 97 RIKD 100
+ D
Sbjct: 318 YLSD 321
Score = 29.9 bits (66), Expect = 0.14
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 19 QIKELNLDNCRSTN-IAALTSEFTNLKILSAINVGLTSL---------KGFPELPALTRL 68
+K L + + N + + E L L +++ L ++ L +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312
Query: 69 ELSDNRISG-GLNVLQSS 85
+ N +S LQ S
Sbjct: 313 NMKYNYLSDEMKKELQKS 330
Score = 28.4 bits (62), Expect = 0.51
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 16/99 (16%)
Query: 16 GKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK----GFPELPALTRLELS 71
+ L + + +I NLK L I+ GL +LP L +L L
Sbjct: 170 AMPLLNNLKIKGTNNLSIGKKPRP--NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 72 --------DNRISGGLNVLQSS--PKLAYLNLCGNRIKD 100
D ++ + P L +L + ++
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 32.3 bits (74), Expect = 0.018
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGG 78
EL LD + T + S + +L ++ N +++L F + L L LS NR
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR---- 89
Query: 79 LNVLQSSP--------KLAYLNLCGNRIK 99
L+ P L L+L GN I
Sbjct: 90 ---LRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 31.9 bits (73), Expect = 0.021
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 57 KGFPELPA-----LTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
KG LP +T L L N+ + L + L ++L NRI L
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS 70
Score = 30.0 bits (68), Expect = 0.10
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISG-GLNVLQ 83
C + + L ++ L T + LT ++LS+NRIS
Sbjct: 16 RCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 84 SSPKLAYLNLCGNRIKDL 101
+ +L L L NR++ +
Sbjct: 76 NMTQLLTLILSYNRLRCI 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 32.2 bits (73), Expect = 0.023
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 19 QIKELNL-DNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRI- 75
LN N + ++ S L+ L GL + ++ LE D +
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 76 ---SGGLNVL-QSSPKLAYLNLCGNRIKDL 101
S + + + LNL N +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Score = 29.5 bits (66), Expect = 0.18
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 52 GLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
LT + K P P L LS N IS + + +L L L NRI+ L+
Sbjct: 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Score = 29.5 bits (66), Expect = 0.23
Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 19 QIKELNLDNCRSTNIAALTSE-FTNLKILSAINVGLTSLKGFPELPA-----LTRLELSD 72
+K L +++ ++ ++ ++ + ++ + T L +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 73 NRISG-GLNVLQSSPKLAYLNLCGNRIKDLE 102
N + + +L L L N +K+
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393
Score = 29.1 bits (65), Expect = 0.27
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIA--ALTSEFTNLKILSAINVGLTSL-KGFP 60
+L D I LNL + T L +K+L N + S+ K
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP---KVKVLDLHNNRIMSIPKDVT 470
Query: 61 ELPALTRLELSDNR---ISGGLNVLQSSPKLAYLNLCGN 96
L AL L ++ N+ + G V L Y+ L N
Sbjct: 471 HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHDN 507
Score = 28.3 bits (63), Expect = 0.48
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 28/111 (25%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSL------KGFPELPALTRLELSD 72
+++ L L N + N+ L ++V L SL + ++ L LS
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 73 NRISGGL---------------NVLQSSP-------KLAYLNLCGNRIKDL 101
N ++G + N + S P L LN+ N++K +
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Score = 26.8 bits (59), Expect = 1.9
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 40 FTNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLNVLQSSP--KLAYLNLCG 95
+ L++L + + SL F L L++S NR L + P L +L+L
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR----LQNISCCPMASLRHLDLSF 130
Query: 96 NRIKDL 101
N L
Sbjct: 131 NDFDVL 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 31.1 bits (71), Expect = 0.046
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 19 QIKELNLDNCRSTN-----IAALTSEFTNLKIL--SAINVGLTSLKGFPEL-----PALT 66
Q++ L + +C T +++ ++ L L S + ++ + L
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373
Query: 67 RLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
L L+D +S L ++ L L+L N + D
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412
Score = 30.7 bits (70), Expect = 0.072
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 60 PELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
P L + L D ++ + L+ +P LA LNL N + D
Sbjct: 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70
Score = 30.3 bits (69), Expect = 0.10
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 19 QIKELNLDNCRSTN--IAALTSEFTNLKILSAINVGLTSL--KGFPEL--------PALT 66
+I++L+L NC T L+S L L +++ L G L L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 67 RLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
+L+L +S +VL++ P L + N I +
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Score = 29.5 bits (67), Expect = 0.17
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 19 QIKELNLDNCR--STNIAALTSEFTNLKILSAINVGLTSL--KGFPEL--------PALT 66
Q + + LD+C ++S L+ +N+ L G + +
Sbjct: 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88
Query: 67 RLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
+L L + ++G + L++ P L L+L N + D
Sbjct: 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127
Score = 29.2 bits (66), Expect = 0.27
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 63 PALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
L L + + +VL + L L + NR++D
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Score = 28.0 bits (63), Expect = 0.59
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 17/98 (17%)
Query: 20 IKELNLDNCRSTNI--AALTSEFTNLKILSAINVGLTSL--KGFPELPA--------LTR 67
+++L L+ C + L S + V + G L L
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 68 LELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
L+L ++ ++ S L L L N++ D
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 31.2 bits (71), Expect = 0.047
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 14 RMGKIQIKELNLDNCRSTN--IAALTSEFTNLK--ILSAINVGLTSLKGFPEL-----PA 64
G+ + E+NL +C+ + L F + L ++G + K +L
Sbjct: 97 GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156
Query: 65 LTRLELSDNRI--SGGL---NVLQSSPKLAYLNLCGNRIKD 100
+T L LS+N + +G L + + +L+L + D
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197
Score = 27.8 bits (62), Expect = 0.77
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 16 GKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLK--GFPELPALTRLELSDN 73
G ++ + + + ILS + L S L +L D+
Sbjct: 268 GGARVVVSLTEGTAVSEYWS--------VILSEVQRNLNSWDRARVQRHLELLLRDLEDS 319
Query: 74 RISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
R + +L+ ++ L
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351
Score = 26.6 bits (59), Expect = 1.8
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 65 LTRLELSDNRI--SGGL---NVLQSSPKLAYLNLCGNRIKD 100
L L ++ N + L + P L L+L N +
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 31.0 bits (71), Expect = 0.058
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 15 MGKIQIKELNLDNCRSTNIAALT----SEFTNLKILSAINVGLTSLKG-FPE---LPALT 66
+ + ++L L F + K I++ SL + L
Sbjct: 194 FANLNLAFVDLSRNM------LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 67 RLELSDNRISGGL-NVLQSSPKLAYLNLCGNR 97
L+L +NRI G L L L LN+ N
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Score = 30.2 bits (69), Expect = 0.085
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINV-GLTSLKG-FPE----LPALTRLELSD 72
++ L+L + S NL L+ + + G+ +L G P L L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 73 NRISGGL-NVLQSSPKLAYLNLCGNRI 98
+SG + + L L L+ N +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 62 LPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
++ L+ N ++ L + S L L+L NRI
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Score = 25.6 bits (57), Expect = 3.4
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 38 SEFTNLKILSAINVGLTSLKG-----FPELPALTRLELSDNRISGGL--NVLQSSPKLAY 90
+ +K L ++ +L G LP L + NRISG + + S
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 91 LNLCGNRI 98
+ + NR+
Sbjct: 179 MTISRNRL 186
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 30.7 bits (70), Expect = 0.058
Identities = 6/84 (7%), Positives = 18/84 (21%), Gaps = 5/84 (5%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKG-FPELPALTRLELSDNRISGGL 79
+ L T + + + + + +
Sbjct: 15 ENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 80 NVLQ--SSPKLAYLNLCGNRIKDL 101
++L+ + P L L +
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQF 96
Score = 29.5 bits (67), Expect = 0.17
Identities = 10/89 (11%), Positives = 21/89 (23%), Gaps = 6/89 (6%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE------LPALTRLELSD 72
+ + N N +LK + P LEL
Sbjct: 31 VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90
Query: 73 NRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
+ + L ++ + + +L
Sbjct: 91 VPLPQFPDQAFRLSHLQHMTIDAAGLMEL 119
Score = 28.8 bits (65), Expect = 0.28
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 2 NSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE 61
L E + L L + + + L L + + L P+
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVP---LPQFPDQAFRLSHLQHMTIDAAGLMELPD 121
Query: 62 ----LPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96
L L L+ N + + S +L L++
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Score = 26.4 bits (59), Expect = 2.1
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE----LPALTRLELSDNRIS 76
+ L L+ I +L + NL+ L ++ + + L LP L L+L
Sbjct: 186 QSLRLEWTG---IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 77 GGL-NVLQSSPKLAYLNLCG-NRIKDL 101
+ L L L + + L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTL 269
Score = 26.1 bits (58), Expect = 2.4
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 29/103 (28%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINV--------------GLTSLKGFPELPA 64
++ L L + AL + +L L +++ + L
Sbjct: 128 GLETLTLARN---PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 65 LTRLELSDNRIS------GGLNVLQSSPKLAYLNLCGNRIKDL 101
L L L I L L L + + + L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQ------NLKSLKIRNSPLSAL 221
Score = 25.3 bits (56), Expect = 5.3
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINV-GLTSLKGFPE----LPALTRLELSDNRI 75
+EL+L C T + F L + + ++L P L L +L+L
Sbjct: 232 EELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 76 SGGL-NVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
L +++ P + + + L+ P+
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 30.7 bits (69), Expect = 0.072
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 19 QIKELNLDNCRS----TNIAALTSEFTNLKILSAINVGLTSLKGFPEL----PALTRLEL 70
+++ + ++ + N++ + VG + +G E P L +LE+
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD-EGLMEFSRGCPNLQKLEM 495
Query: 71 SDNRIS--GGLNVLQSSPKLAYLNLCGNRIKD 100
S + P L YL + G R
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527
Score = 30.7 bits (69), Expect = 0.072
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 21 KELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELP--ALTRLELSDNRISGG 78
+ + + C + L+ F NL+ L LKG P L
Sbjct: 53 EHVTMALCYTATPDRLSRRFPNLRSL--------KLKGKPRAAMFNLIPENWGGYVTPWV 104
Query: 79 LNVLQSSPKLAYLNLCGNRIKD 100
+ + +L ++ + D
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSD 126
Score = 28.8 bits (64), Expect = 0.40
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 14/100 (14%)
Query: 19 QIKELNLDNCR---STNIAALTSEFTNLKILS-----AINVGLTSLKGFPE-LPALTRLE 69
++ L LD C + + ++ + +K L L + +L L
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198
Query: 70 LSDNRISG----GLNVL-QSSPKLAYLNLCGNRIKDLETL 104
+ L + ++ L + + I +L
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238
Score = 28.0 bits (62), Expect = 0.73
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 20 IKELNLDNCRS-------TNIAALTSEFTNLKILS-AINVGLTSLKGFPEL----PALTR 67
+ + LD + +L L+ + + G + G + P +
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467
Query: 68 LELSDNRIS--GGLNVLQSSPKLAYLNLCGNRIKD 100
+ L S G + + P L L + G +
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502
Score = 27.6 bits (61), Expect = 0.81
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILS---AINVGLTSLKGFPELPALTRLELSDNRI 75
++ L L + L ++ L A+ + P L LE +
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330
Query: 76 SGGLNVL-QSSPKLAYLNLCG 95
GL VL Q +L L +
Sbjct: 331 DRGLEVLAQYCKQLKRLRIER 351
Score = 27.6 bits (61), Expect = 0.99
Identities = 8/92 (8%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKIL--SAINVGLTSLKGFPELPALTRLELSDNRIS 76
+ + + + + NL+ ++N + + + L +L
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280
Query: 77 GGLN---VLQSSPKLAYLNLCGNRIKDLETLE 105
G + + ++ L+L ++ +
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312
Score = 25.3 bits (55), Expect = 6.1
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRIS-- 76
Q+K L ++ + + L A+ G L+ + + + I+
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE---------YMAVYVSDITNE 393
Query: 77 GGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ L L ++ T PL
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPL 424
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 30.4 bits (69), Expect = 0.074
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGLNVLQ 83
C S ++ + L L SL F EL +LT+L L N+ LQ
Sbjct: 13 ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-------LQ 65
Query: 84 SSP--------KLAYLNLCGNRIKDLE 102
S P L YLNL N+++ L
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Score = 27.3 bits (61), Expect = 0.91
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 17/71 (23%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLNVLQSSP--------KLAY 90
T+L L L SL F +L +LT L LS N+ LQS P +L
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-------LQSLPNGVFDKLTQLKE 104
Query: 91 LNLCGNRIKDL 101
L L N+++ L
Sbjct: 105 LALNTNQLQSL 115
Score = 26.6 bits (59), Expect = 1.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 41 TNLKILSAINVGLTSL-KG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
T LK L+ L SL G F +L L L L N+ L+S P + L
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-------LKSVPDGVFDRL 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 30.0 bits (68), Expect = 0.10
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSLKG---FPELPALTRLELSDNRISGGL--N 80
+C + + + + L + L + F LP L +LEL N+++ G+ N
Sbjct: 14 DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN 72
Query: 81 VLQSSPKLAYLNLCGNRIKDL 101
+ + + L L N+IK++
Sbjct: 73 AFEGASHIQELQLGENKIKEI 93
Score = 28.0 bits (63), Expect = 0.54
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 66 TRLELSDNRISG--GLNVLQSSPKLAYLNLCGNRIKDLE 102
T L L+DN + + P L L L N++ +E
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Score = 25.3 bits (56), Expect = 3.8
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 41 TNLKILSAINVGLTSL--KGFPELPALTRLELSDNRIS----GGLNVLQSSPKLAYLNLC 94
++++ L + + K F L L L L DN+IS G L S L LNL
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS---LTSLNLA 134
Query: 95 GN 96
N
Sbjct: 135 SN 136
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.0 bits (68), Expect = 0.11
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 17/71 (23%)
Query: 41 TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLNVLQSSP--------KLAY 90
NLK L + L +L F L LT L+L N+ L P L
Sbjct: 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDRLVHLKE 116
Query: 91 LNLCGNRIKDL 101
L +C N++ +L
Sbjct: 117 LFMCCNKLTEL 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.8 bits (67), Expect = 0.13
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKI----LSAINVGLTSLKGFPE-LPALTRLELSDNRIS- 76
+ RS L F+ ++ LS + +++L G L L L R+S
Sbjct: 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132
Query: 77 GGLNVLQSSPKLAYLNLCG 95
+N L + L LNL G
Sbjct: 133 PIVNTLAKNSNLVRLNLSG 151
Score = 27.9 bits (62), Expect = 0.62
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 19 QIKELNLDNCRSTNIAALT--SEFTNLKILS---AINVGLTSLKGFPELPALTRLELSDN 73
+ L+L + + L+ LS ++ +L E+P L L++
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282
Query: 74 RISGGLNVLQSSPKLAYLNLCGNRIKDL 101
G L +L+ + L +L + + +
Sbjct: 283 VPDGTLQLLKEA--LPHLQINCSHFTTI 308
Score = 27.2 bits (60), Expect = 1.1
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 19 QIKELNLDNCRSTNIAALT-SEFTNLKILSAINVGLTSLKGFPEL----PALTRLELSD- 72
+++ L+L+ R ++ T ++ +NL L+ S L L L LS
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 73 NRIS-GGLNVL--QSSPKLAYLNLCG 95
+ + V S + LNL G
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSG 204
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 28.4 bits (64), Expect = 0.34
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGLNVLQ 83
C S + ++ + ++ L + L SL F +L LT+L LS N+ +Q
Sbjct: 13 RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-------IQ 65
Query: 84 SSP--------KLAYLNLCGNRIKDL 101
S P KL L L N+++ L
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSL 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 15/45 (33%)
Query: 61 ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLE 105
E AL +L+ + L S+P LA IK T+E
Sbjct: 18 EKQALKKLQ---ASLK--LYADDSAPALA--------IK--ATME 47
Score = 26.1 bits (56), Expect = 2.4
Identities = 2/12 (16%), Positives = 7/12 (58%)
Query: 1 MNSNLPFFEPDT 12
+ ++L + D+
Sbjct: 25 LQASLKLYADDS 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 28.0 bits (63), Expect = 0.58
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLNVLQ 83
+C ++A++ + T ++L + +T L+ F L LTRL+L +N+ L
Sbjct: 15 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------LT 67
Query: 84 SSP--------KLAYLNLCGNRIK 99
P +L L+L N++K
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLK 91
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR,
leucine-rich repeat, LRR, system; 2.10A {Petromyzon
marinus}
Length = 174
Score = 27.6 bits (62), Expect = 0.63
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSLKG--FPELPALTRLELSDNRISGGLNVLQ 83
NC++ +A++ + T+ + L N +T L+ F L L +L + N+ L
Sbjct: 18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-------LT 70
Query: 84 SSP--------KLAYLNLCGNRIK 99
+ P +L L+L N +K
Sbjct: 71 AIPTGVFDKLTQLTQLDLNDNHLK 94
Score = 26.8 bits (60), Expect = 1.1
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 41 TNLKILSAINVGLTSL-KG-FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
NL+ L + LT++ G F +L LT+L+L+DN L+S P+ A+ NL
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-------LKSIPRGAFDNL 104
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 27.1 bits (60), Expect = 0.76
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 58 GFPELPALTRLELSDNRIS---GGLNVLQSSPKLAYLNLCGN 96
FP T L L+ N ++ G +L + P L +L N
Sbjct: 28 AFPVD--TTELVLTGNNLTALPPG--LLDALPALRTAHLGAN 65
Score = 24.4 bits (53), Expect = 6.9
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 40 FTNLKILSAINVGLTSLKG--FPELPALTRLELSDN 73
+ L LT+L LPAL L N
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 26.9 bits (60), Expect = 1.7
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 1 MNSNLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVG---LTSLK 57
M++ ++E + E M + +++EL L + T A S + ++ S + + SL
Sbjct: 2 MST--QYWEEEIEIMSREKLQELQLQRLKKTINIAANSPYYK-EVFSKNGITGDSIQSLD 58
Query: 58 GFPELPALTRLELSDNRISGGLNV 81
++P T+ ++ N G +
Sbjct: 59 DIRKIPFTTKSDMRANYPFGLVAG 82
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 26.1 bits (58), Expect = 2.2
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 65 LTRLELSDNRIS--GGL---NVLQSSPKLAYLNLCGNRIKD 100
+ + + R + +L+ + L LN+ N I
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 25.8 bits (57), Expect = 3.2
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 20/102 (19%)
Query: 19 QIKELNLDNCRSTNI------AALTSEFTNLKILSAINVGLTSLKGFPEL--------PA 64
+ LNL + L S ++ L L K + EL
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-KSYAELAYIFSSIPNH 226
Query: 65 LTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKDL 101
+ L L N + G + S L + L + +K++
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 25.6 bits (56), Expect = 4.2
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 33 IAALTSEFTNLKILSAINVGLTSLKGFPEL-------PALTRLELSDNRISGG-----LN 80
I L + T+LK ++ N+ S + L + + L++ IS +
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 81 VLQSSPKLAYLNLCGNRIKD 100
++++SP L LN+ N +
Sbjct: 93 LIETSPSLRVLNVESNFLTP 112
>1p5v_B CAF1M, F1 capsule antigen, chaperone protein CAF1M;
chaperone-target complex, chaperone-subunit complex,
protein fiber; 1.70A {Yersinia pestis} SCOP: b.2.3.2
PDB: 1p5u_C 1p5u_B 3dsn_B 1z9s_B 3dos_B 3dpb_B
Length = 147
Score = 24.1 bits (51), Expect = 9.8
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 42 NLKILSAINVGLTSLKGFPELPALTRLELSD 72
N I + + VG +L G+ T + +D
Sbjct: 32 NGNIDTELLVGTLTLGGYKTGTTSTSVNFTD 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.376
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,536,654
Number of extensions: 76839
Number of successful extensions: 1484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 468
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)