RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8464
(111 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 43.8 bits (102), Expect = 8e-07
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L L ++I+ + S T L+ L N ++ + L + L N+IS
Sbjct: 308 NLTYLTLYFNNISDISPV-SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS-D 365
Query: 79 LNVLQSSPKLAYLNLCGN 96
L L + ++ L L
Sbjct: 366 LTPLANLTRITQLGLNDQ 383
Score = 40.4 bits (93), Expect = 1e-05
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
NL L+ ++ + L L RL ++N++S ++ L + + +L+ N+I
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DVSSLANLTNINWLSAGHNQIS 364
Query: 100 DLETLEPL 107
DL L L
Sbjct: 365 DLTPLANL 372
Score = 38.8 bits (89), Expect = 4e-05
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLN 92
++ + L A +G+ S+ G L LT++ S+N+++ + L++ KL +
Sbjct: 41 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDIL 94
Score = 34.2 bits (77), Expect = 0.001
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ EL L + +NI+ L T L L L + L LT L L N IS
Sbjct: 264 KLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-D 321
Query: 79 LNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
++ + S KL L N++ D+ +L L
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANL 350
Score = 33.1 bits (74), Expect = 0.004
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 53 LTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+T +L +T L+ I ++ ++ L +N N++ D+ L+ L
Sbjct: 34 VTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITPLKNL 87
Score = 32.3 bits (72), Expect = 0.007
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIK 99
TNL LS L + L LT L+L++N+IS L L KL L L N+I
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQIS 276
Query: 100 DLETLEPL 107
++ L L
Sbjct: 277 NISPLAGL 284
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 39.0 bits (89), Expect = 4e-05
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 27 NCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSP 86
N S I +L +L+ L+ N L L P L RL S N ++ V +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLA---EVPELPQ 324
Query: 87 KLAYLNLCGNRIKDLETL 104
L L++ N +++ +
Sbjct: 325 NLKQLHVEYNPLREFPDI 342
Score = 37.9 bits (86), Expect = 9e-05
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
++ELN+ N + L + L+ L A L + L +L + N +
Sbjct: 285 SLEELNVSNN---KLIELPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREF 339
Query: 79 LNVLQSSPKLAYLN 92
++ +S L +N
Sbjct: 340 PDIPESVEDL-RMN 352
Score = 30.2 bits (66), Expect = 0.042
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 65 LTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETL 104
LEL++ +S ++ + P L L N + +L L
Sbjct: 40 AHELELNNLGLS---SLPELPPHLESLVASCNSLTELPEL 76
Score = 30.2 bits (66), Expect = 0.043
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
Q EL L+N +++L +L+ L A LT L +L L + +N +
Sbjct: 39 QAHELELNNL---GLSSLPELPPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA 92
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 38.4 bits (87), Expect = 6e-05
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 59 FPELPALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
P L + L D ++ + L+ +P LA LNL N + D
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 69
Score = 32.3 bits (71), Expect = 0.009
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 63 PALTRLELSDNRISGG-----LNVLQSSPKLAYLNLCGNRIKD 100
L L L+D +S L ++ L L+L N + D
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411
Score = 31.9 bits (70), Expect = 0.010
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 23/88 (26%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG- 77
++ L L +C ++ + S++ +L L+LS+N +
Sbjct: 370 VLRVLWLADCDVSDSSC-----------SSL------AATLLANHSLRELDLSNNCLGDA 412
Query: 78 GLNVL-----QSSPKLAYLNLCGNRIKD 100
G+ L Q L L L +
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSE 440
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 37.3 bits (85), Expect = 1e-04
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
+ + L L A + ++ + LP L + L +N+IS ++ L ++ L + L
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTL 224
Score = 34.6 bits (78), Expect = 0.001
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRI 75
+ T+ ++ + LSA G+T+++G L L LEL DN+I
Sbjct: 24 IAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Score = 30.8 bits (68), Expect = 0.026
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
P L ++ + ++ + + L+ G + +E ++ L
Sbjct: 16 PALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEGVQYL 62
Score = 29.6 bits (65), Expect = 0.054
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 59 FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L LT L+ DN+IS ++ L S P L ++L N+I D+ L
Sbjct: 169 LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSPLANT 216
Score = 29.6 bits (65), Expect = 0.067
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 40 FTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRI 98
N ++A +T +L +T L ++ + +Q L L L N+I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI 75
Score = 27.3 bits (59), Expect = 0.34
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSD 72
++ L D+ + ++I+ L + NL + N ++ + L + L++
Sbjct: 174 KLTTLKADDNKISDISPL-ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 35.1 bits (80), Expect = 4e-04
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 19 QIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGG 78
+ L+L + R + + L++L A + L ++ G LP L L L +NR+
Sbjct: 21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 80
Query: 79 --LNVLQSSPKLAYLNLCGNRIKDLETLEP 106
+ L S P+L LNL GN + E ++
Sbjct: 81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
Score = 30.8 bits (69), Expect = 0.016
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 44 KILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLE 102
++L + LT L +L +T L+LS NR+ L + L L N +++++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.4 bits (80), Expect = 5e-04
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
NL T+ +E ++ + A N + S++G LP +T+L L+ N+++
Sbjct: 29 DNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82
Score = 32.3 bits (72), Expect = 0.006
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 41 TNLKILSAINVGLTSLKGFP---ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
N+ S+ EL ++ ++ +++ I + +Q P + L L GN+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNK 79
Query: 98 IKDLETLEPL 107
+ D++ L L
Sbjct: 80 LTDIKPLANL 89
Score = 30.4 bits (67), Expect = 0.028
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 50 NVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNL 93
+ ++ + L L L LS N IS L L L L L
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL 207
Score = 27.3 bits (59), Expect = 0.37
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPALTRLELS 71
+ T L+ L ++ L+ L L LEL
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208
Score = 26.1 bits (56), Expect = 0.93
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L KL L L N I DL L L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDLRALAGL 199
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.9 bits (78), Expect = 8e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 59 FPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIKDLETLE 105
F L++S RI L++ KL + +K L TLE
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
Score = 25.6 bits (54), Expect = 1.4
Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 3/29 (10%)
Query: 50 NVGLTSL-KGFPELPALTRLELSDNRISG 77
+T + P L ++
Sbjct: 17 ESKVTEIPSDLP--RNAIELRFVLTKLRV 43
Score = 24.1 bits (50), Expect = 5.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 80 NVLQSSPKLAYLNLCGNRIKDL 101
+V + L++ RI L
Sbjct: 195 DVFHGASGPVILDISRTRIHSL 216
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 33.4 bits (75), Expect = 0.002
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 18 IQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
++ +EL+L + I L + + + + L GFP L L L +++NRI
Sbjct: 18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 77
Query: 78 GL-NVLQSSPKLAYLNLCGNRIKDLETLEP 106
+ Q+ P L L L N + +L L+P
Sbjct: 78 IGEGLDQALPDLTELILTNNSLVELGDLDP 107
Score = 30.3 bits (67), Expect = 0.025
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 59 FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
+ L+L +I N+ + + ++ N I+ L+ L
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 33.3 bits (74), Expect = 0.003
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 44 KILSAINVGLTSLKGFPELPALTRLELSDNRISG-GLNVLQSS-----PKLAYLNLCGNR 97
+ + + E L L L N I + L++ P L +L L GNR
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Query: 98 IKDLETL 104
+ + +
Sbjct: 314 FSEEDDV 320
Score = 30.6 bits (67), Expect = 0.034
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 34 AALTSEFTNLKILSAINVGLTSL-KGFPELPALTRLELSDNRISGGL-----NVLQSSPK 87
A + E +LK+ + S+ E ++ + LS N I + S
Sbjct: 1 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60
Query: 88 LAYLNLCGNRIKDLETLEP 106
L ++ P
Sbjct: 61 LEIAEFSDIFTGRVKDEIP 79
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 33.1 bits (74), Expect = 0.004
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 38 SEFTNLKILSAINVGLTSLKGFPELPA-LTRLELSDNRISG-GLNVLQSSPKLAYLNLCG 95
S+ + ++ LT+L P+LP T L LS+N + L L +L LNL
Sbjct: 7 SKVASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 96 NR 97
Sbjct: 65 AE 66
Score = 28.5 bits (62), Expect = 0.14
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 59 FPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGN 96
L L L L +N + S L + L GN
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.7 bits (73), Expect = 0.005
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 23 LNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISG 77
L T+ + ++ + L A +G+ S+ G L LT++ S+N+++
Sbjct: 23 TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76
Score = 30.8 bits (68), Expect = 0.019
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 NVGLTSLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYL 91
+ +T LK L L RL++S N++S ++VL L L
Sbjct: 159 SNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESL 199
Score = 28.5 bits (62), Expect = 0.12
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 60 PELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L + L ++ ++ ++ L IK ++ +E L
Sbjct: 15 TALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEYL 61
Score = 26.9 bits (58), Expect = 0.51
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 41 TNLKILSAINVGLTSLKGFP---ELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
T L +G T++ +L +T L+ I ++ ++ L +N N+
Sbjct: 15 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 73
Query: 98 IKDLETLE 105
+ D+ L+
Sbjct: 74 LTDITPLK 81
Score = 26.9 bits (58), Expect = 0.55
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 78 GLNVLQSSPKLAYLNLCGNRIKDLETLEPL 107
L L + L L++ N++ D+ L L
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKL 193
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 32.4 bits (72), Expect = 0.006
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 57 KGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNR 97
+G +L L L +S N + G + + + N+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 26.6 bits (57), Expect = 0.65
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 70 LSDNRISGGL-NVLQSSPKLAYLNLCGNRI 98
L +NRI G L L L LN+ N +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 23.6 bits (49), Expect = 7.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 65 LTRLELSDNRISGGLNVLQSSPKLAYLNLC 94
+ L+LS + + S L YLN
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.6 bits (68), Expect = 0.024
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 5/110 (4%)
Query: 4 NLPFFEPDTERMGKIQIKELNLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPE-- 61
+L D + + + LN + + + + L L+ N L L
Sbjct: 28 DLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 87
Query: 62 --LPALTRLELSDNRISGGLNV-LQSSPKLAYLNLCGNRIKDLETLEPLF 108
P L L LS N + + KL L L GN + D + +
Sbjct: 88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137
Score = 25.2 bits (54), Expect = 2.0
Identities = 14/87 (16%), Positives = 30/87 (34%)
Query: 24 NLDNCRSTNIAALTSEFTNLKILSAINVGLTSLKGFPELPALTRLELSDNRISGGLNVLQ 83
L + + + S+ + + GL S L + + + +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 84 SSPKLAYLNLCGNRIKDLETLEPLFGS 110
+ P+L LNL NR+ L+ + +
Sbjct: 63 NIPELLSLNLSNNRLYRLDDMSSIVQK 89
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 30.4 bits (67), Expect = 0.035
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 27 NCRSTNIAALTSEF-TNLKILSAINVGLTSL--KGFPELPALTRLELSDNRISGGL-NVL 82
C + + + + +L N +T + F L L L L +N+IS
Sbjct: 16 QCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75
Query: 83 QSSPKLAYLNLCGNRIKDL 101
KL L L N++K+L
Sbjct: 76 APLVKLERLYLSKNQLKEL 94
Score = 26.5 bits (57), Expect = 0.66
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 58 GFPELPALTRLELSDNRISG-------GLNVLQSSPKLAYLNLCGNRIKDLETLEPLF 108
G + + + L +N IS + ++L N ++ E F
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294
Score = 25.0 bits (53), Expect = 2.4
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 42 NLKILSAINVGLTSL-KGFPELPALTRLELSDNRISG-GLNVLQSSPKLAYLNLCGNRIK 99
+L+++ ++GL + K P P L+L +N+I+ ++ L L L N+I
Sbjct: 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 100 DLE 102
+
Sbjct: 69 KIS 71
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.8 bits (55), Expect = 1.1
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 55 SLKGFPELPALTRLELSDNRISGGLNVLQSSPKLAYLNLCGNRIKDL 101
+L E+P L L++ G L +L+ + L +L + + +
Sbjct: 217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEA--LPHLQINCSHFTTI 261
Score = 25.1 bits (53), Expect = 2.5
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 54 TSLKGFPELPALTRLELSDNRISGG--LNVLQSSPKLAYLNLCGNRIKD 100
L + ++LS++ I +L KL L+L G R+ D
Sbjct: 37 QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 24.8 bits (54), Expect = 2.2
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 51 VGLTSLKGFPELPA--LTRLELSDNRISGGLNVLQSSPKLA 89
V + K ++ + +T L + R++ L++L + P +A
Sbjct: 142 VRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVA 182
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 25.2 bits (54), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 91 LNLCGNRIKDLETLEPLFG 109
+NL G KDL+ + + G
Sbjct: 368 VNLSGRGDKDLDIVLKVSG 386
>d1p5vb_ b.2.3.2 (B:) F1 capsule antigen Caf1 {Yersinia pestis
[TaxId: 632]}
Length = 136
Score = 24.7 bits (53), Expect = 2.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 42 NLKILSAINVGLTSLKGFPELPALTRLELSD 72
N I + + VG +L G+ T + +D
Sbjct: 21 NGNIDTELLVGTLTLGGYKTGTTSTSVNFTD 51
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor,
Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 23.6 bits (49), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 50 NVGLTSL-KGFPELPALTRLELSDNRISG 77
GL ++ G P A R+ L NRIS
Sbjct: 20 QQGLQAVPVGIP--AASQRIFLHGNRISH 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.376
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,376
Number of extensions: 13618
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 63
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)