BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8466
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 91/188 (48%), Gaps = 7/188 (3%)
Query: 207 EFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFST 264
EF S S + + L G K C C K FS +L EH + H G K KC C K FS
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 265 KSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYL 322
K LT H + H G K KC C K FS ++ L H + H G K C C K FS+ ++L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 323 TEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHR 380
H + H G K KC C K FS + NL H H G + YKC C K FS + L H+
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 381 KLHQDIKN 388
+ H K
Sbjct: 182 RTHTGKKT 189
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCD 229
Y C C K FS +L H + H G K KC C K FS K LT H + H G K KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 230 LCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSK 287
C K FS ++ L H + H G K C C K FS ++L H + H G K KC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 288 EFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN 334
FS + L H + H G K KC C K FSR+ L H + H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 185 SYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLT 242
S A L G K C C K FS +L EH + H G K KC C K FS K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 243 EHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMK 300
H + H G K KC C K FS ++ L H + H G K C C K FS ++L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 301 LHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQG 358
H G K KC C K FSR+ L H + H G K KC C K FS + L H H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 90/185 (48%), Gaps = 7/185 (3%)
Query: 234 EFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFST 291
EF + S + + L G K C C K FS +L EH + H G K KC C K FS
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 292 KSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNL 349
K LT H + H G K KC C K FS+++ L H + H G K C C K FS ++L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 350 TKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHM 407
H H G + YKC C K FS + +L H++ H K KC C K FS + L H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 408 KLHQG 412
+ H G
Sbjct: 182 RTHTG 186
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 261 EFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSR 318
EF + S + + L G K C C K FS +L EH + H G K KC C K FS
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 319 KSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHL 376
K LT H + H G K KC C K FS ++NL H H G + Y C C K FS HL
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 377 TEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNL 430
H++ H K KC C K FS + L H + H G YKC C K FS + L
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 163 HMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKL 220
H + H G + YKC C K FS K LT H + H G K KC C K FS ++ L H +
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Query: 221 HQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGI 278
H G K C C K FS ++L H + H G K KC C K FS + L H + H G
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 279 KN-KCDLCSKEFSTKSYLTEHMKLHQGLKN 307
K KC C K FS + L H + H G K
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 390 CDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNLT 431
C C K FS L EH + H G YKC C K FS K +LT
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDL 365
KC C K FS+ S L +H + H G K KC C K FS S+L KH H G + YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 366 CSKEFSWKGHLTEHRKLHQDIK 387
C K FS HL+ H++ HQ+ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCD 229
YKC C K FS S L H + H G K KC C K FS S L +H + H G K KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 230 LCSKEFSTKSYLTEHMKLHQGIK 252
C K FS +L+ H + HQ K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDL 284
KC C K FS S L +H + H G K KC C K FS S L +H + H G K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 285 CSKEFSTKSYLTEHMKLHQGLK 306
C K FS +L+ H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDL 392
KC C K FS SNL KH H G + YKC C K FS L +H++ H K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 393 CSKEFSSKRILTEHMKLHQ 411
C K FS L+ H + HQ
Sbjct: 66 CGKSFSRSDHLSRHQRTHQ 84
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYKCG 418
YKC C K FS +L +H++ H K KC C K FS L +H + H G YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 419 LCSKEFSCKSNLT 431
C K FS +L+
Sbjct: 65 ECGKSFSRSDHLS 77
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 161 EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
+KH + H G + YKC C K FS +L+ H + HQ K
Sbjct: 49 QKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C K F+HKS +HM++H G+R Y C +C K+F K HL H K+H IK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 397 FSSKRILTEHM 407
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C K F+ KS HM +H G++ C +C K+F K +L HM +H GI+ Y+C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 370 FSWKGHLTEH 379
F W+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C K F+ KS HM +H GL+ C +C K+F K +L HMK+H GIK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 343 FSHKSNLTKHMN 354
F + + +H+
Sbjct: 75 FMWRDSFHRHVT 86
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCD 229
Y C C K F+ KS HM +H GL+ C +C K+F K +L HMK+H GIK +C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 230 LCSKEFSTKSYLTEHM 245
+C+K F + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C K F+ KS HM +H G++ C +C K+F K +L HMK+H GIK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 262 FSTKSYLTEHM 272
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C K F+ KS HM +H G++ C +C K+F K +L HMK+H GIK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 289 FSTKSYLTEHM 299
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 153 RSINYKCQ-EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFS 209
+S +K Q ++HM +H G+R Y C +C KKF K +L HMK+H G+K +C++C+K F
Sbjct: 17 KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76
Query: 210 SKSYLTEHM 218
+ H+
Sbjct: 77 WRDSFHRHV 85
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C K F+ KS HM +H G++ C +C K+F K +L HMK+H G+K +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 316 FSRKSYLTEHM 326
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 393 CSKEFSSKRILTEHMKLHQGI-TYKCGLCSKEFSCKSNLT 431
C K F+ K HM +H G+ Y CG+C K+F K +L
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLV 54
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS K+ L H+++H G K +C +C + FS ++ L H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+T T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS K+ L H+++H G K +C +C + FS ++ L H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+T T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS K+ L H+++H G K +C +C + FS ++ L H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+T T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS K+ L H+++H G K +C +C + FS ++ L H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+ T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS K+ L H+++H G K +C +C + FS+++ L H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ T+H +H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS K+NL H+ +H G + ++C +C + FS + L H + H K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F++ T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 161 EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHM 218
+ H+++H G + ++C +C + FS ++ L AH++ H G K CD+C ++F++ T H
Sbjct: 23 DTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHT 82
Query: 219 KLH 221
K+H
Sbjct: 83 KIH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS K +L H ++H K +C +C + FS + L H++ H G +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS S LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS S LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS S LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS S LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS S LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS SNLT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FS S LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS +LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS + LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS + LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FSR + LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS + LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS + LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS + LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FSR + LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS + LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS ++LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FS+ LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS +LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS G LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FSR LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 23 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Query: 220 LH 221
+H
Sbjct: 83 IH 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 64 CDICGRKFA 72
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FSR LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+R H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS LT H+++H G K +C +C + FSR +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS LT H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKE 369
C + FSR LT H+++H G K +C +C + FS +LT H+ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 370 FSWKGHLTEHRKLH 383
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS LT H+++H G K +C +C + FS +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS LT+H+ +H G + ++C +C + FS HLT H + H K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+H+++H G + ++C +C + FS +LT H++ H G K CD+C ++F+ H K
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 220 LH 221
+H
Sbjct: 84 IH 85
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS LT H ++H K +C +C + FS LT H++ H G +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
Y C + C ++FS K+ L H+++H G K +C +C + FS + L +H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
CD+C ++F+T H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 261
C + FS K+ L H+++H G K +C +C + FS + L +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 262 FSTKSYLTEHMKLH 275
F+T H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKE 288
C + FS K+ L H+++H G K +C +C + FS + L +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 289 FSTKSYLTEHMKLH 302
F+T H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKE 315
C + FS K+ L H+++H G K +C +C + FS + L +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 316 FSRKSYLTEHMKLH 329
F+ H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKE 342
C + FS K+ L H+++H G K +C +C + FS+ + L +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 343 FSHKSNLTKHMNLH 356
F+ +H +H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKE 396
C + FS K+NL H+ +H G + ++C +C + FS L +H + H K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 397 FSSKRILTEHMKLH 410
F++ H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 361 YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYK 416
Y C + C + FS K +L H ++H K +C +C + FS L +H++ H G +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 417 CGLCSKEFS 425
C +C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLH 194
+H++ H G + + CD+C +KF+T H K+H
Sbjct: 52 QHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGLKN-KCDLCS 313
C+K + S+L H + H G K +CD C + FS L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 314 KEFSRKSYLTEHMKLHQGIKN---KCDLCSKEFSHKSNLTKHMNLH 356
++FSR +L H + H G K + C K+F+ L +H N+H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 177 CSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEHMKLHQGIKN-KCDLCS 232
C+K++ S+L H + H G K +CD C + FS L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 233 KEFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLH 275
++FS +L H + H G K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGIKN-KCDLCS 259
C+K + S+L H + H G K +CD C + FS L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 260 KEFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLH 302
++FS +L H + H G K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSKEFSHKSNLTKHMNLHQGIR-YKCDLCS 367
C+K + + S+L H + H G K +CD C + FS L +H H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 368 KEFSWKGHLTEHRKLHQDIKN---KCDLCSKEFSSKRILTEHMKLH 410
++FS HL H + H K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 163 HMKLHQGVR-YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHM 218
H + H G + Y+CD C ++FS L H + H G+K +C C ++FS +L H
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 219 KLHQGIKN---KCDLCSKEFSTKSYLTEHMKLH 248
+ H G K + C K+F+ L H +H
Sbjct: 87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-KCDLCS 394
C+K + S+L H H G + Y+CD C + FS L H++ H +K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 395 KEFSSKRILTEHMKLHQGITYKCGLCSKEFSCK 427
++FS L H + H G K FSC+
Sbjct: 74 RKFSRSDHLKTHTRTHTG--------EKPFSCR 98
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 138 FKSCPKVKVKSDHERRSINYKCQEKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQG 196
FK C + +SD +R H + H GV+ ++C C +KFS +L H + H G
Sbjct: 41 FKDCERRFSRSDQLKR---------HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
Query: 197 LKN---KCDLCSKEFSSKSYLTEHMKLH 221
K + C K+F+ L H +H
Sbjct: 92 EKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIK-NKCDLC 339
C +C K F S L+ H+ +H + C C K F +KS + +H +H G K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 340 SKEFSHKSNLTKHMNLHQG 358
K FS SNL H H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIK-NKCD 229
+ C +C K F S L+ H+ +H + C C K F KS + +H +H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 230 LCSKEFSTKSYLTEHMKLHQG 250
+C K FS S L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIK-NKCDLC 258
C +C K F S L+ H+ +H + C C K F KS + +H +H G K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 259 SKEFSTKSYLTEHMKLHQG 277
K FS S L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIK-NKCDLC 285
C +C K F S L+ H+ +H + C C K F KS + +H +H G K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 286 SKEFSTKSYLTEHMKLHQG 304
K FS S L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLC 393
C +C K F S L+ H+ +H R Y C C K F K + +H +H K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 394 SKEFSSKRILTEHMKLHQG 412
K FS L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 163 HMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLK-NKCDLCSKEFSSKSYLTEHMKL 220
H+ +H R Y C C K+F KS + H +H G K +KC +C K FS S L H +
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Query: 221 HQG 223
H G
Sbjct: 80 HTG 82
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYKCG 418
+ C +C K F L+ H +H D + C C K F K + +H +H G +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 419 LCSKEFSCKSNL 430
+C K FS SNL
Sbjct: 62 VCGKAFSQSSNL 73
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 161 EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQG 196
+KH +H G + +KC +C K FS S L H + H G
Sbjct: 46 KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDL 365
KC++C K FSRK L HM+ H G+K KC C + S+L KH+ +H R +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 366 CSKEFSWKGHLTEHRKLH 383
C LT H + H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDL 284
KC++C K FS K L HM+ H G+K KC C + S L +H+++H + KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 285 CSKEFSTKSYLTEHMKLHQG 304
C S LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCD 229
+KC++C K FS K L HM+ H G+K KC C + S L +H+++H + KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 230 LCSKEFSTKSYLTEHMKLHQG 250
+C S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDL 392
KC++C K FS K L HM H G++ YKC C + L +H ++H D + KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 393 CSKEFSSKRILTEHMKLHQG 412
C + LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDL 338
KC++C K FS K L HM+ H G+K KC C + S L +H+++H + KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 339 CSKEFSHKSNLTKHMNLHQG 358
C + S LT H+ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG-ITYKCG 418
+KC++C K FS K L H + H +K KC C + L +H+++H +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 419 LCSKEFSCKSNLT 431
+C S LT
Sbjct: 69 ICPYASRNSSQLT 81
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLH 383
KCD C K FSH S+L+KH H G + YKCD C K F + HL H ++H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 171 RYKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQG 223
RYKCD C K FS S L+ H + H G K KCD C K F +S+L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQG 331
KCD C K FS S L++H + H G K KCD C K F ++S+L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQG 250
KCD C K FS S L++H + H G K KCD C K F +S+L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQG 277
KCD C K FS S L++H + H G K KCD C K F +S+L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQG 304
KCD C K FS S L++H + H G K KCD C K F +S+L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQG 358
KCD C K FS S L++H + H G K KCD C K F +S+L H +H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 360 RYKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG 412
RYKCD C K FS L++HR+ H K KCD C K F + L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 389 KCDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNL 430
KCD C K FS L++H + H G YKC C K F +S+L
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKNKCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSK 341
C+K F S + +H+ H + C C K F S L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 342 EFSHKSNLTKHMNLHQGIR-YKC--DLCSKEFSWKGHLTEHRKLHQDIKN 388
FS NL H+ +H G R Y C D C+K+F+ +L H H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSK 260
C+K F S + +H+ H + C C K F S L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 261 EFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGLKN 307
FS L H+++H G + D C+K+F+ + L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 177 CSKKFSTKSYLTAHMKLHQGLKNKCDLCSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSK 233
C+K F S + H+ H + C C K F S L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 234 EFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGIKN 280
FS L H+++H G + D C+K+F+ + L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKNKCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDL--CSK 314
C+K F S + +H+ H + C C K F S L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 315 EFSRKSYLTEHMKLHQGIKN---KCDLCSKEFSHKSNLTKHMNLH 356
FS L H+++H G + D C+K+F+ +NL H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 161 EKHMKLHQGVRYKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEH 217
KH+ H + C C K F S L H +H G K +C C K FS L H
Sbjct: 24 RKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 218 MKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGIKN 253
+++H G + D C+K+F+ + L H+ H KN
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDL--CSK 395
C+K F S + KH++ H + C C K F L H+ +H K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 396 EFSSKRILTEHMKLHQG-ITYKCGL--CSKEFSCKSNL 430
FS L H+++H G Y C C+K+F+ +NL
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLC 393
C C + F+ NL H H R Y CD+C K F + HL +HR +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 394 SKEFSSKRILTEHMKLH 410
K F R L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 282 CDLCSKEFSTKSY-LTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDL 338
C C + F TKSY L H + H + CD+C K F R+ +L +H +H K KC
Sbjct: 20 CKFCGRHF-TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 339 CSKEFSHKSNLTKHMNLH 356
C K F L H LH
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLC 258
C C + F+ L H + H + CD+C K F + +L +H +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 259 SKEFSTKSYLTEHMKLH 275
K F L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 228 CDLCSKEFSTKSY-LTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDL 284
C C + F TKSY L H + H + CD+C K F + +L +H +H K KC
Sbjct: 20 CKFCGRHF-TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 285 CSKEFSTKSYLTEHMKLH 302
C K F L H LH
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 163 HMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKL 220
H + H R Y CD+C K F + +L H +H K KC C K F L H L
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 221 H 221
H
Sbjct: 96 H 96
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 255 CDL--CSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGLKN-K 308
CD C+K ++ S+L H++ H G K KC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 309 CDLCSKEFSRKSYLTEHMKLHQ 330
C +C++ FSR +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 174 CDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEHMKLHQGIKN-K 227
CD C+K ++ S+L AH++ H G K KC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 228 CDLCSKEFSTKSYLTEHMKLHQ 249
C +C++ FS +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 201 CDL--CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGIKN-K 254
CD C+K ++ S+L H++ H G K KC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 255 CDLCSKEFSTKSYLTEHMKLHQ 276
C +C++ FS +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 309 CDL--CSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSKEFSHKSNLTKHMNLHQGIR-YK 362
CD C+K +++ S+L H++ H G K KC C F+ LT+H H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 363 CDLCSKEFSWKGHLTEHRKLHQD 385
C +C++ FS HL H K HQ+
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 138 FKSCPKVKVKSDHERRSINYKCQEKHMKLHQGVR-YKCDL--CSKKFSTKSYLTAHMKLH 194
+ C KV KS H + H++ H G + YKC C +F+ LT H + H
Sbjct: 20 YPGCTKVYTKSSH---------LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 195 QGLKN-KCDLCSKEFSSKSYLTEHMKLHQ 222
G K +C +C++ FS +L HMK HQ
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 336 CDL--CSKEFSHKSNLTKHMNLHQGIR-YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-K 389
CD C+K ++ S+L H+ H G + YKC C F+ LT H + H K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 390 CDLCSKEFSSKRILTEHMKLHQ 411
C +C++ FS L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 173 KCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKNK---- 227
+C C KKF +K YL H + H G K +C C K + K L EH + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 228 CDLCSKEFSTKSYLTEHMKLHQG-IKNKCDLCSKEFSTKSYLTEHM-KLHQG 277
C +C + F + L HM H G + KC CS++F K L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKNK---- 308
+C C K+F +K YL H + H G K +C C K + K L EH + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 309 CDLCSKEFSRKSYLTEHMKLHQG-IKNKCDLCSKEFSHKSNLTKHM-NLHQG 358
C +C + F R+ L HM H G + KC CS++F K +L HM LH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKH-----MNLHQGIRY 361
+C C K+F K YL H + H G K +C C K + K NL +H MN + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 362 KCDLCSKEFSWKGHLTEHRKLHQ-DIKNKCDLCSKEFSSKRILTEHM-KLHQGIT 414
C +C + F + L H H ++ KC CS++F K+ L HM KLH G +
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKNK---- 389
+C C K+F K L H H G + ++C C K + K +L EH ++ N+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA--RNCMNRSEQV 66
Query: 390 --CDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNL 430
C +C + F + L HM H G + YKC CS++F K +L
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG-LKNKCDLCSKEFSSKSYLTEHM-KLHQG 223
+ C +C + F + L HM H G + KC CS++F K L HM KLH G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 163 HMKLHQG-VRYKCDLCSKKFSTKSYLTAHM-KLHQG 196
HM H G + YKC CS++F K L +HM KLH G
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQG 412
YKCD C F +KG+L H+ +H K +C++C +F+ L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
KCD C F +K NL H +H G + Y+C++C +F+ +L H ++H K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIK 225
YKCD C F K L +H +H G K +C++C +F+ + L H ++H G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KCD C F K L H +H G K +C++C +F+R + L H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KCD C F K L H +H G K +C++C +F+ + L H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 385 DIKNKCDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNL 430
D KCD C F K L H +H G Y+C +C +F+ +NL
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 171 RYKCDL--CSKKFSTKSYLTAHMKLHQGLKN---KCDLCSKEFSSKSYLTEHMKLHQGIK 225
RY C C ++ L AH+ H G K K + C K F+S +LT H H G K
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 226 N---KCDLCSKEFSTKSYLTEHMKLHQGIK---NKCDL--CSKEFSTKSYLTEHMKLH-Q 276
N D C F+TK+ + +H IK C C K F + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 277 GIKNKC--DLCSKEFSTKSYLTEHMKLHQGLKNKCD 310
+ +C + C K FS S L H K+H G K D
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN---KCDLCSKEFSRKSYLTEHMKLHQGIKN---KCDL 338
C ++ L H+ H G K K + C K F+ +LT H H G KN D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 339 CSKEFSHKSNLTKHMNLHQGIR---YKCDL--CSKEFSWKGHLTEHRKLH-QDIKNKC-- 390
C F+ K+N+ KH N I+ Y C C K F L H+ H Q + +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 391 DLCSKEFSSKRILTEHMKLHQGITYKCGLCSKEFSC 426
+ C K FS L H K+H G C K+ SC
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYP-----CKKDDSC 170
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGIKN---KCDL 257
C ++ L H+ H G K K + C K F++ +LT H H G KN D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 258 CSKEFSTKSYLTEHMKLHQGIK---NKCDL--CSKEFSTKSYLTEHMKLH-QGLKNKC-- 309
C F+TK+ + +H IK C C K F + L H H Q L +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 310 DLCSKEFSRKSYLTEHMKLHQGIKNKCD 337
+ C K FS S L H K+H G K D
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 255 CDL--CSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGLKN-K 308
CD C K ++ S+L H++ H G K CD C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 309 CDLCSKEFSRKSYLTEHMKLH 329
C C + FSR +L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 174 CDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEHMKLHQGIKN-K 227
CD C K ++ S+L AH++ H G K CD C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
C C + FS +L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 309 CDL--CSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSKEFSHKSNLTKHMNLHQGIR-YK 362
CD C K +++ S+L H++ H G K CD C +F+ LT+H H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 363 CDLCSKEFSWKGHLTEHRKLH 383
C C + FS HL H K H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 201 CDL--CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGIKN-K 254
CD C K ++ S+L H++ H G K CD C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 255 CDLCSKEFSTKSYLTEHMKLH 275
C C + FS +L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 336 CDL--CSKEFSHKSNLTKHMNLHQGIR-YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-K 389
CD C K ++ S+L H+ H G + Y CD C +F+ LT H + H + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 390 CDLCSKEFSSKRILTEHMKLH 410
C C + FS L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 255 CDL--CSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGLKN-K 308
CD C K ++ S+L H++ H G K CD C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 309 CDLCSKEFSRKSYLTEHMKLH 329
C C + FSR +L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 174 CDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEHMKLHQGIKN-K 227
CD C K ++ S+L AH++ H G K CD C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 228 CDLCSKEFSTKSYLTEHMKLH 248
C C + FS +L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 309 CDL--CSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSKEFSHKSNLTKHMNLHQGIR-YK 362
CD C K +++ S+L H++ H G K CD C +F+ LT+H H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 363 CDLCSKEFSWKGHLTEHRKLH 383
C C + FS HL H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 201 CDL--CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLHQGIKN-K 254
CD C K ++ S+L H++ H G K CD C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 255 CDLCSKEFSTKSYLTEHMKLH 275
C C + FS +L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 336 CDL--CSKEFSHKSNLTKHMNLHQGIR-YKCDL--CSKEFSWKGHLTEHRKLHQDIKN-K 389
CD C K ++ S+L H+ H G + Y CD C +F+ LT H + H + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 390 CDLCSKEFSSKRILTEHMKLH 410
C C + FS L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKNK---CD 337
C++C K F +L H H G K C +C F RK ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 338 LCSKEFSHKSNLTKHM-NLHQG 358
C K FS +L H+ +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKNK---CD 283
C++C K F +L H H G K C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 284 LCSKEFSTKSYLTEHMK-LHQG 304
C K FS +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKNK---CD 256
C++C K F +L H H G K C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 257 LCSKEFSTKSYLTEHMK-LHQG 277
C K FS +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 174 CDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKNK---CD 229
C++C K F +L H H G K C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 230 LCSKEFSTKSYLTEHMK-LHQG 250
C K FS +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQGI---RYKCD 364
C++C K F +L H H G K C +C F K ++ H+ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 365 LCSKEFSWKGHLTEHRK 381
C K FS HL H K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKNK---CD 391
C++C K F +L +H H G + Y C +C F K ++ H + H K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 392 LCSKEFSSKRILTEHMK-LHQGIT 414
C K FS L H+K +H G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKNK---CDLCSKEFSSKSYLTEHMK-LHQG 223
Y C +C +F K ++ H++ H G K C C K FS +L H+K +H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 363 CDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLHQGIT---YKCG 418
C++C K F HL H+ H K C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 419 LCSKEFS 425
C K FS
Sbjct: 70 SCGKGFS 76
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLH 356
C C K FSR S L +H ++H G K KC C K FS S L H +H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLH 221
Y C C K FS S L H ++H G K KC C K FS S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLH 329
C C K FS S L +H ++H G K KC C K FS+ S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 275
C C K FS S L +H ++H G K KC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 302
C C K FS S L +H ++H G K KC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 248
C C K FS S L +H ++H G K KC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLH 383
C C K FS S L +H +H G + YKC C K FS L H+++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEHMKLH 410
Y C C K FS L +H+++H K KC C K FS L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 390 CDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSNL 430
C C K FS IL +H ++H G YKC C K FS S L
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 258 CSKEFSTKSYLTEHMKL-HQGIKNK---------CDLCSKEFSTKSYLTEHMKLHQGLKN 307
C + FST L H+ + H G + C K F K L H+++H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 308 -KCDL--CSKEFSRKSYLTEHMKLHQGIKN-KCDL--CSKEFSHKSNLTKHMNLH 356
C C K F+R L H + H G K KC+ C + F++ S+ KHM++H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 177 CSKKFSTKSYLTAHMKL-HQGLKNK---------CDLCSKEFSSKSYLTEHMKLHQGIKN 226
C + FST L H+ + H G + C K F +K L H+++H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 227 -KCDL--CSKEFSTKSYLTEHMKLHQGIKN-KCDL--CSKEFSTKSYLTEHMKLH 275
C C K F+ L H + H G K KC+ C + F+ S +HM +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 173 KCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDL--CSKEFSSKSYLTEHMKLHQGIKN-KC 228
+C K F K L H+++H G K C C K F+ L H + H G K KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 229 DL--CSKEFSTKSYLTEHMKLH 248
+ C + F+ S +HM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 285 CSKEFSTKSYLTEHMKL-HQGLKNK---------CDLCSKEFSRKSYLTEHMKLHQGIKN 334
C + FST L H+ + H G + C K F K L H+++H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 335 -KCDL--CSKEFSHKSNLTKHMNLHQGIR-YKCDL--CSKEFSWKGHLTEHRKLHQDIKN 388
C C K F+ NL H H G + +KC+ C + F+ +H +H K+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 254 KCDLCSKEFSTKSYLTEHMK---LHQGIKN---KCDLCSKE---FSTKSYLTEHMKLHQG 304
+ D CS+EF ++ L H+ +H K CS+E F + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 305 LK-NKCDL--CSKEFSRKSYLTEHMKLHQGIKN---KCDLCSKEFSHKSNLTKHMN 354
K +KC C K +SR L H++ H G K + + CSK FS+ S+ KH N
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 200 KCDLCSKEFSSKSYLTEHMK---LHQGIKN---KCDLCSKE---FSTKSYLTEHMKLHQG 250
+ D CS+EF S+ L H+ +H K CS+E F + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 251 IK-NKCDL--CSKEFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHM-KLHQ 303
K +KC C K +S L H++ H G K + + CSK FS S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 304 GLKN---KCDLCSKEFSRKSYLTEHMKLHQG 331
K K C+K ++ S L +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 227 KCDLCSKEFSTKSYLTEHMK---LHQGIKN---KCDLCSKE---FSTKSYLTEHMKLHQG 277
+ D CS+EF ++ L H+ +H K CS+E F + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 278 IK-NKCDL--CSKEFSTKSYLTEHMKLHQGLKN---KCDLCSKEFSRKSYLTEHM-KLHQ 330
K +KC C K +S L H++ H G K + + CSK FS S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 331 GIKN---KCDLCSKEFSHKSNLTKHMNLHQG 358
K K C+K ++ S+L KH+ G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 163 HMKLHQGVR-YKCDL--CSKKFSTKSYLTAHMKLHQGLKN---KCDLCSKEFSSKSYLTE 216
HM+ H G + +KC C K +S L H++ H G K + + CSK FS+ S +
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 217 HM-KLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQG 250
H + H K K C+K ++ S L +H+K G
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLH 329
C + FS LT H+++H G K +C +C + FSR +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 172 YKCDL--CSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLH 221
Y C + C ++FS LT H+++H G K +C +C + FS +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 339 CSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLH 383
C + FS LT+H+ +H G + ++C +C + FS HLT H + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 312 CSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLH 356
C + FSR LT H+++H G K +C +C + FS +LT H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 248
C + FS LT H+++H G K +C +C + FS +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 275
C + FS LT H+++H G K +C +C + FS +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLH 302
C + FS LT H+++H G K +C +C + FS +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 162 KHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLH 194
+H+++H G + ++C +C + FS +LT H++ H
Sbjct: 39 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 393 CSKEFSSKRILTEHMKLHQGI-TYKCGLCSKEFSCKSNLT 431
C + FS LT H+++H G ++C +C + FS +LT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNL 355
+C +C + FSR +LT H++ H G K CD+C ++F+ +H ++
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFS 209
++C +C + FS +LT H++ H G K CD+C ++F+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEH 325
+C +C + FS +LT H++ H G K CD+C ++F+R H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFS 263
+C +C + FS +LT H++ H G K CD+C ++F+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFS 398
++C +C + FS HLT H + H K CD+C ++F+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKNK-CDLCSKEFSTKSYLTEHMKLHQ 249
C+ C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKNK-CDLCSKEFSTKSYLTEHMKLHQ 276
C+ C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIKNK-CDLCSKEFSTKSYLTEHMKLHQ 303
C+ C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKNK-CDLCSKEFSSKSYLTEHMKLHQ 222
+ C+ C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKNK-CDLCSKEFSRKSYLTEHMKLHQ 330
C+ C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIKNK-CDLCSKEFSHKSNLTKHMNLHQ 357
C+ C K + S L+ H + H G + + C C K F +S + +H+ +HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIRYK-CDLCSKEFSWKGHLTEHRKLHQD 385
C+ C K + S L++H H G R + C C K F + + H K+HQ+
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNK-CDLCSKEFSSKRILTEHMKLHQ 411
+ C+ C K + L+ HR+ H + + C C K F + + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 171 RYKCDL--CSKKFSTKSYLTAHMKLHQGLKN---KCDLCSKEFSSKSYLTEHMKLHQGIK 225
RY C C ++ L AH+ H G K K + C K F+S +LT H H G K
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 226 N---KCDLCSKEFSTKSYLTEHMKLHQGIK 252
N D C F+TK+ + +H IK
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 285 CSKEFSTKSYLTEHMKLHQGLKN---KCDLCSKEFSRKSYLTEHMKLHQGIKN---KCDL 338
C ++ L H+ H G K K + C K F+ +LT H H G KN D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 339 CSKEFSHKSNLTKHMNLHQGIR 360
C F+ K+N+ KH N I+
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 204 CSKEFSSKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGIKN---KCDL 257
C ++ L H+ H G K K + C K F++ +LT H H G KN D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 258 CSKEFSTKSYLTEHMKLHQGIK 279
C F+TK+ + +H IK
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 231 CSKEFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGIKN---KCDL 284
C ++ L H+ H G K K + C K F++ +LT H H G KN D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 285 CSKEFSTKSYLTEHMKLHQGLK 306
C F+TK+ + +H +K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 258 CSKEFSTKSYLTEHMKLHQGIKN---KCDLCSKEFSTKSYLTEHMKLHQGLKN---KCDL 311
C ++ L H+ H G K K + C K F++ +LT H H G KN D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 312 CSKEFSRKSYLTEHMKLHQGIK 333
C F+ K+ + +H IK
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 170 VRYKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQGIKN-K 227
V Y C +C + + + L H +H K C C K F Y T+H H G + +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 228 CDLCSKEFSTKSYLTEHMK 246
C C K F +++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLC 285
C +C + + + L H +H K C C K F Y T+H H G + +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 286 SKEFSTKSYLTEHMK 300
K F +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLC 258
C +C + + + L H +H K C C K F Y T+H H G + +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 259 SKEFSTKSYLTEHMK 273
K F +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQG-IRYKCDLCSKEFSWKGHLTEHRKLHQ-DIKNKCDLC 393
C +C + + ++L +H N+H +Y C C K F + T+H H + + +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 394 SKEFSSKRILTEHMK 408
K F + + ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLC 312
C +C + + + L H +H K C C K F Y T+H H G + +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 313 SKEFSRKSYLTEHMK 327
K F +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 161 EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHM 218
+H +H + Y C C K F Y T H H G + +C C K F + +++ H+
Sbjct: 39 RRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
Query: 219 K 219
K
Sbjct: 99 K 99
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLC 339
C +C + + + L H +H K C C K F Y T+H H G + +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 340 SKEFSHKSNLTKHM 353
K F + ++ H+
Sbjct: 85 GKSFINYQFMSSHI 98
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQG-IRYKCDLC 366
C +C + + + L H +H K C C K F TKH H G RY+C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 367 SKEF 370
K F
Sbjct: 85 GKSF 88
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C C K FS+KSYL HM+ H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIK 225
C C K FSSKSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLK 306
C C K FS+KSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIK 252
C C K FS+KSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIK 279
C C K FS+KSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIK 333
C C K FS KSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKCD+C K+FS S+L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
YKCD+C KEFS HL H+++H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KCD+C KEFS+ S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KCD+C KEFS S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KCD+C KEFS S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KCD+C KEFS S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KCD+C KEFS S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KCD+C KEFS S+L H +H G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 389 KCDLCSKEFSSKRILTEHMKLHQG 412
KCD+C KEFS L H ++H G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C+ C K FS+KSYL H ++H G K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIK 225
C+ C K+FSSKSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLK 306
C+ C K+FS+KSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIK 252
C+ C K+FS+KSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIK 279
C+ C K+FS+KSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIK 333
C+ C K+FS KSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 390 CDLCSKEFSSKRILTEHMKLHQG 412
C+ C K+FSSK L H ++H G
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 335 KCDLCSKEFSHKSNLTKH-MNLH-QGIR-YKCDLCSKEFSWKGHLTEHRKLHQDI 386
+C +CS+ ++H SN +H + H + ++ Y C C KEF+ K ++T H K+ I
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 172 YKCDLCSKKFS-----TKSYLTAHMKLHQGLKNKCDLCSKEFSSKSYLTEHMKL 220
Y+C +CS+ ++ + Y+T+H + C C KEF+ K +T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKNK---CDLCSKEFSRKSYLTEHMKL 328
+C +CS+ ++ S H K C C KEF+RK +T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 308 KCDLCSKEFSRKS-----YLTEHMKLHQGIK-NKCDLCSKEFSHKSNLTKHMNL 355
+C +CS+ ++ S Y+T H + +K C C KEF+ K N+T H+ +
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEH-MKLHQG 331
C++C++ F+ + +L H + H K C LC++ F+R+ L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKN-KCDLCSKEFSSKRILTEH-MKLHQG 412
+ C++C++ F+ + HL H + H + K C LC++ F+ + +L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKH-MNLHQG 358
C++C++ F+R+ +L H + H K C LC++ F+ + L +H +H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEH-MKLHQG 250
C++C++ F+ + +L H + H K C LC++ F+ + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEH-MKLHQG 223
+ C++C++ F+ + +L H + H K C LC++ F+ + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEH-MKLHQG 277
C++C++ F+ + +L H + H K C LC++ F+ + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEH-MKLHQG 304
C++C++ F+ + +L H + H K C LC++ F+ + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 390 CDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFS 425
C++C++ F+ + L H + H Y CGLC++ F+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 171 RYKCDLCSKKFSTKSYLTAHMKLHQGLK 198
RYKC+ C K FS S L+ H K+H G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K FSR S L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 360 RYKCDLCSKEFSWKGHLTEHRKLH 383
RYKC+ C K FS L++H+K+H
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIH 35
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K FS S L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K FS S L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K FS S L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K FS S L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 173 KCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMKLHQ 222
+C C K F + YL H++ H G K KC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQ 249
+C C K F S YL H++ H G K KC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQ 330
+C C K F + YL H++ H G K KC+ C ++K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIKN-KCDLCSKEFSHKSNLTKHMNLHQ 357
+C C K F YL H++ H G K KC+ C + K++L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQ 276
+C C K F + YL H++ H G K KC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMKLHQ 303
+C C K F + YL H++ H G K KC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
+CD+C K FSH ++LT+H +H G
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+CD+C K FS + LT H ++H G K
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+CD+C K FS + LT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
+CD+C K FS + LT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
+CD+C K FS + LT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
+CD+C K FS + LT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
+CD+C K FS + LT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
Y+CD+C K FS LT+H+++H K
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 389 KCDLCSKEFSSKRILTEHMKLHQG 412
+CD+C K FS LT+H ++H G
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSG 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 228 CDL--CSKEFSTKSYLTEHMKLHQGIKNKC-----DLCSKEFSTKSYLTEHMKLHQGIKN 280
CD C + FS + YL H K +Q I K C K F+ K +L EHMKLH ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 201 CDL--CSKEFSSKSYLTEHMKLHQGIKNKC-----DLCSKEFSTKSYLTEHMKLHQGIKN 253
CD C + FS++ YL H K +Q I K C K F+ K +L EHMKLH ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 255 CDL--CSKEFSTKSYLTEHMKLHQGIKNKC-----DLCSKEFSTKSYLTEHMKLH 302
CD C + FS + YL H K +Q I K C K F+ K +L EHMKLH
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 282 CDL--CSKEFSTKSYLTEHMK---LHQ-GLKNKCDLCSKEFSRKSYLTEHMKLHQGIKN 334
CD C + FS + YL H K +HQ C K F+ K +L EHMKLH ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 336 CDL--CSKEFSHKSNLTKH---MNLHQGIRYKCD--LCSKEFSWKGHLTEHRKLHQDIKN 388
CD C + FS++ L H ++HQ + C C K F++K HL EH KLH D ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 174 CDL--CSKKFSTKSYLTAHMK---LHQ-GLKNKCDLCSKEFSSKSYLTEHMKLHQGIKN 226
CD C + FS + YL H K +HQ C K F+ K +L EHMKLH ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 363 CDL--CSKEFSWKGHLTEHRKLHQDIKNKC-----DLCSKEFSSKRILTEHMKLH 410
CD C + FS + +L H+K +Q I K C K F+ K+ L EHMKLH
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C C K F +KSYL HM+ H G K
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIK 225
C C K F SKSYL HM+ H G K
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLK 306
C C K F +KSYL HM+ H G K
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIK 252
C C K F +KSYL HM+ H G K
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIK 279
C C K F +KSYL HM+ H G K
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIK 333
C C K F KSYL HM+ H G K
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
Y+CD C K FS K L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y+CD C K FS KG L H ++H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVH 34
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQG 331
+CD C K FS+K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
+CD C K FS K +L H+ +H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQG 223
+CD C K FS K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQG 250
+CD C K FS K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQG 277
+CD C K FS K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQG 304
+CD C K FS K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 389 KCDLCSKEFSSKRILTEHMKLHQG 412
+CD C K FS K L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKCD+C K F S LT H ++H G K
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KCD+C K F + S+LT H +H G
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
YKCD+C K F + LT H+++H
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KCD+C K F S LT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KCD+C K F S LT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KCD+C K F S LT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KCD+C K F S LT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KCD+C K F S LT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C+ C K FS +S LT H +H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
+C+ C K FS +S LT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
+C+ C K FS +S LT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
+C+ C K FS +S LT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
+C+ C K FS +S LT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+C+ C K FS +S LT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
+C+ C K FS +S+LT H +H G
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
Y+C+ C K FS + LT H+ +H K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C+ C K FS KS L+AH + H G K
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIK 333
C+ C K FS+KS L+ H + H G K
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEK 39
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 390 CDLCSKEFSSKRILTEHMKLHQG 412
C+ C K FS K IL+ H + H G
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y+C +CSK F+ K HL +H+K H
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C +CSK F+ K++L H K H G K
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 309 CDLCSKEFSRKSYLTEHMKLHQGIK 333
C +CSK F++K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIK 225
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLK 306
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIK 252
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIK 279
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+LT H ++H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K F++ S+LT H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K F+ S+LT H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K F+ S+LT H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K F+ S+LT H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K F+ S+LT H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HLT H ++H K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+L H ++H G+K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HL H+++H +K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K F++ S+L H ++H G+K
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K F+ S+L H ++H G+K
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K F+ S+L H ++H G+K
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K F+ S+L H ++H G+K
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K F+ S+L H ++H G+K
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQGIR 360
KC+ C K F+ S+L H +H G++
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRK 381
C+ C S L KH+ H +R Y C C+ F KG+LT+H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 161 EKHMKLHQGVR-YKCDLCSKKFSTKSYLTAHMK 192
+KH++ H VR Y C C+ F TK LT HMK
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMK 246
C+ C S L +H++ H ++ C C+ F TK LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMK 273
C+ C S L +H++ H ++ C C+ F TK LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFSTKSYLTEHMK 300
C+ C S L +H++ H ++ C C+ F TK LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 171 RYKCDLCSKKFSTKSYLTAHMKLHQGLKN-KCDLCSKEFSSKSYLTEHMK 219
+Y C+ C + S L H++ H ++ C C+ F +K LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F SYL+ H ++H G K
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K F SYL+ H ++H G K
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K F SYL+ H ++H G K
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K F SYL+ H ++H G K
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K F SYL+ H ++H G K
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K F SYL+ H ++H G K
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KC+ C K F H S L++H +H G
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLH 194
+KC+ C K F +S+L H++LH
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLH 329
KC+ C K F R+S+L H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLH 248
KC+ C K F +S+L H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLH 275
KC+ C K F +S+L H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLH 302
KC+ C K F +S+L H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLH 221
KC+ C K F +S+L H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HL HR++H K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+L H ++H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K F++ S+L H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K F+ S+L H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K F+ S+L H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K F+ S+L H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K F+ S+L H ++H G K
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQG 358
C +C K F+ +SNL KH +H G
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTG 37
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C +C K F+ +S L H K+H G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 282 CDLCSKEFSTKSYLTEHMKLHQGLK 306
C +C K F+ +S L +H K+H G K
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIK 225
C +C K F+ +S L +H K+H G K
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC C K F T+S LT H +H G K
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K FS S L H ++H G K
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC+ C K FS+ S L H ++H G K
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KC+ C K FS S L +H +H G
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTG 37
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC+ C K FS S L H ++H G K
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLHQGIK 225
KC+ C K FS S L H ++H G K
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC+ C K FS S L H ++H G K
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC+ C K FS S L H ++H G K
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C C+K FS KS L H + H G+K
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 228 CDLCSKEFSTKSYLTEHMKLHQGIK 252
C C+K FS KS L H + H G+K
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 255 CDLCSKEFSTKSYLTEHMKLHQGIK 279
C C+K FS KS L H + H G+K
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
Y C C+K FS K L H++ H +K
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C +C K FS + L+ H ++H G K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
+C +C K FSH+ +L+ H +H G
Sbjct: 14 ECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
Y C+ C K F +KSYL H + H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQG 223
C+ C K F SKSYL H + H G
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
Y+C+ C K F+TKS L H + H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C +C K F+ KS L H ++H G K
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
+KC C K FS +S L H KLH G K
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC C K FSR+S L H KLH G K
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC C K F HL EHR++H +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC C K F R ++L EH ++H G +
Sbjct: 14 KCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
YKC +C K F S+L H +H G
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQG 250
KC +C K F S+L +H +H G
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQG 277
KC +C K F S+L +H +H G
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQG 304
KC +C K F S+L +H +H G
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
YKC +C K F HL +H +H
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVH 35
>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From
Mycobacterium Marinum
Length = 233
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PKKVANIFNLHYIKVGSSLSENGTHRTAVMELNVEESEDHVGLSPPLYDPSRVIK 97
PK V H I +G+ L +G HR A NV+ +E +G++ P Y V+K
Sbjct: 95 PKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIP-YAAMEVLK 148
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KC+ C K FSH ++L+KH +H G
Sbjct: 14 KCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
++C+ C K+F+ S+L +H ++H G K
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
+KC+ C K+F+ S L +H ++H G K
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
++CD C K F +S L +H +H G K
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+CD C K F ++S L H +H G K
Sbjct: 14 RCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C+ C K F+ KS L H +H G+K
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
Y C+ C K F++K L H+ +H +K
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HL HR +H K
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+L H +H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F S LT H +H G K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
+KC+ C K F+ S LT H ++H G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HL HR +H K
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+L H +H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK 387
YKC+ C K F+ HL HR +H K
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F+ S+L H +H G K
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+C C K F+RKS L+ H K+H G K
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
++C C K F+ KS L+ H K+H G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C C K F KS L+ H ++H+G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C C K F+ KS L H ++H G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+C C K F+RKS L H ++H G K
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
+C C K F+ K+NLT+H +H G
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTG 37
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C C K F+ K+ LT H ++H G K
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y+C C K F+ K +LT+H+++H
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIH 35
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
+C C K F++K+ LT+H ++H G K
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 336 CDLCSKEFSHKSNLTKHMNLHQGIR 360
C C K F+HK+NL H +H G R
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 309 CDLCSKEFSRKSYLTEHMKL-HQGIKNKCDLCSKEFSHKSNLTKHMN 354
C +C + F+ K H++L H C C F LT+H+N
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 201 CDLCSKEFSSKSYLTEHMK-LHQGIKNKCDLCSKEFSTKSYLTEHMKLHQGIKNKC 255
C +C + F+SK H++ LH C C F + LT H+ NKC
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI-------NKC 79
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C+ C K FS S L H ++H G K
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y+C C K F+ +S L H K+H G K
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLH-QGIKN 253
KC+ C K FS YLT+H ++H +G+K+
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLH-QGIKN 280
KC+ C K FS YLT+H ++H +G+K+
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 200 KCDLCSKEFSSKSYLTEHMKLH-QGIKN 226
KC+ C K FS YLT+H ++H +G+K+
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLH-QGLKN 199
+KC+ C K FS YLT H ++H +G+K+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLH-QGLKN 307
KC+ C K FS YLT+H ++H +G+K+
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLH-QGIKN 334
KC+ C K FS YLT+H ++H +G+K+
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
++C C K F+TKS L H + H G K
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C+ C K FS S LT H +H G K
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
YKC+ C K F +S L H H G K
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQ 195
YKC LC + F KS L+ H ++H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
YKC C K F+WK L H+K H
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCH 35
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
YKC C K F+ KS L H K H G
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLH 194
+ C C K FS+KSYL H + H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
Y+C C K FS + L H +LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y+C C K FS +G L H +LH
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLH 33
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y C+ C K F K HL HR++H
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIH 35
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y C+ C K F KS+L H ++H G K
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 361 YKCDLCSKEFSWKGHLTEHRKLH 383
Y C++C K F HL +H ++H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
Y CD C K F + L H ++H G K
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 151 ERRSINYKCQEKHMKLHQGVRYKCDLCSKKFSTKSYLTAH 190
++ S+N+ Q KH + +R+ C+ C K+F + AH
Sbjct: 19 QKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQ----GIRYKCDLCSKEFSWKGHLTEHR 380
+C++C K++L H H +R+ C+ C K F + HR
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQGLK 198
++C C K FS S L H ++H G K
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 201 CDLCSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSTKSYLTEHM 245
C LC FSS L +H++ + K C +C KEF++ +H+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 281 KCDLCSKEFSTKSYLTEHMKLHQGLK 306
KC C K+F+T L H+++H G K
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 227 KCDLCSKEFSTKSYLTEHMKLHQGIK 252
KC C K+F+T L H+++H G K
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 254 KCDLCSKEFSTKSYLTEHMKLHQGIK 279
KC C K+F+T L H+++H G K
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 335 KCDLCSKEFSHKSNLTKHMNLHQG 358
KC C K+F+ NL +H+ +H G
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSG 27
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 309 CDLCSKEFSRKSYLTEHMKLH 329
C+ C K F R S+L EH+K H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRH 35
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 172 YKCDLCSKKFSTKSYLTAHMKLHQG 196
Y C +C K+FS K + H ++H G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 308 KCDLCSKEFSRKSYLTEHMKLHQGIK 333
KC C K ++++ +LT+H ++H G K
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,903,683
Number of Sequences: 62578
Number of extensions: 534296
Number of successful extensions: 3587
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 1380
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)