Query psy8466
Match_columns 431
No_of_seqs 590 out of 2450
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:35:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.9 5.5E-29 1.2E-33 216.1 2.8 131 278-409 129-265 (279)
2 KOG2462|consensus 99.9 1.8E-28 3.8E-33 213.0 5.1 129 252-381 130-264 (279)
3 KOG3608|consensus 99.9 3E-27 6.5E-32 209.9 12.0 210 202-412 140-377 (467)
4 KOG1074|consensus 99.9 4.4E-28 9.5E-33 237.1 3.5 50 363-412 882-932 (958)
5 KOG3608|consensus 99.9 3.8E-26 8.2E-31 202.9 11.6 201 229-430 140-368 (467)
6 KOG1074|consensus 99.9 8.4E-27 1.8E-31 228.1 0.4 54 171-224 353-407 (958)
7 KOG3623|consensus 99.9 4.1E-23 8.9E-28 199.0 9.1 69 361-429 895-965 (1007)
8 KOG3623|consensus 99.8 2.2E-21 4.7E-26 187.3 5.7 103 144-246 210-330 (1007)
9 KOG3576|consensus 99.7 2.9E-17 6.3E-22 135.8 2.7 105 308-412 119-237 (267)
10 KOG3576|consensus 99.6 7.9E-16 1.7E-20 127.3 2.2 118 253-385 118-237 (267)
11 PLN03086 PRLI-interacting fact 99.4 5.4E-13 1.2E-17 131.0 6.6 141 254-409 409-562 (567)
12 PLN03086 PRLI-interacting fact 99.3 5.4E-12 1.2E-16 124.0 8.1 133 281-427 409-554 (567)
13 PHA02768 hypothetical protein; 99.1 6.5E-11 1.4E-15 77.9 2.9 42 388-430 6-47 (55)
14 PHA00733 hypothetical protein 99.0 2E-10 4.4E-15 92.4 4.8 79 334-413 41-125 (128)
15 PHA02768 hypothetical protein; 98.9 8.8E-10 1.9E-14 72.6 2.1 42 361-403 6-47 (55)
16 PHA00733 hypothetical protein 98.9 1.9E-09 4.1E-14 86.7 3.7 77 308-385 42-124 (128)
17 KOG3993|consensus 98.7 1.9E-09 4E-14 99.5 -1.3 186 171-357 267-482 (500)
18 KOG3993|consensus 98.7 1.3E-09 2.8E-14 100.5 -2.4 184 199-382 268-480 (500)
19 PF13465 zf-H2C2_2: Zinc-finge 98.6 3.1E-08 6.7E-13 55.8 2.0 25 402-426 1-26 (26)
20 PHA00732 hypothetical protein 98.3 4.1E-07 8.9E-12 66.2 2.8 48 360-412 1-49 (79)
21 PF13465 zf-H2C2_2: Zinc-finge 98.3 4.1E-07 9E-12 51.2 2.1 23 349-371 2-25 (26)
22 PHA00616 hypothetical protein 98.3 4.4E-07 9.5E-12 56.9 1.7 37 388-424 2-39 (44)
23 PHA00616 hypothetical protein 98.1 1.3E-06 2.7E-11 54.9 1.9 32 360-391 1-33 (44)
24 PHA00732 hypothetical protein 98.1 1.7E-06 3.8E-11 62.9 2.5 47 334-385 2-49 (79)
25 PF05605 zf-Di19: Drought indu 98.1 4.8E-06 1E-10 56.2 4.3 49 361-412 3-54 (54)
26 PF05605 zf-Di19: Drought indu 97.9 1.7E-05 3.6E-10 53.6 4.2 49 333-384 2-53 (54)
27 PF12756 zf-C2H2_2: C2H2 type 97.9 5.9E-06 1.3E-10 64.0 2.2 72 336-410 2-73 (100)
28 PF00096 zf-C2H2: Zinc finger, 97.8 9E-06 2E-10 44.3 1.5 21 389-409 2-22 (23)
29 PF00096 zf-C2H2: Zinc finger, 97.8 1.3E-05 2.8E-10 43.7 2.0 23 361-383 1-23 (23)
30 PF12756 zf-C2H2_2: C2H2 type 97.7 2E-05 4.4E-10 60.9 2.6 71 309-382 2-72 (100)
31 PF13894 zf-C2H2_4: C2H2-type 97.5 4.6E-05 1E-09 41.8 1.7 22 389-410 2-23 (24)
32 PF13894 zf-C2H2_4: C2H2-type 97.4 0.0001 2.2E-09 40.4 2.2 23 361-383 1-23 (24)
33 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00013 2.9E-09 41.4 1.6 24 360-383 1-24 (27)
34 PF13912 zf-C2H2_6: C2H2-type 97.0 0.00034 7.3E-09 39.6 1.5 25 171-195 1-25 (27)
35 smart00355 ZnF_C2H2 zinc finge 96.9 0.00098 2.1E-08 37.0 2.5 22 389-410 2-23 (26)
36 smart00355 ZnF_C2H2 zinc finge 96.7 0.0013 2.7E-08 36.5 2.2 24 361-384 1-24 (26)
37 KOG2231|consensus 96.7 0.0032 6.9E-08 63.8 6.4 39 226-276 100-138 (669)
38 KOG2231|consensus 96.6 0.0046 9.9E-08 62.6 6.7 47 199-258 100-146 (669)
39 COG5189 SFP1 Putative transcri 96.6 0.00051 1.1E-08 61.8 -0.0 50 358-407 347-418 (423)
40 PF13909 zf-H2C2_5: C2H2-type 96.4 0.0014 3.1E-08 35.9 1.1 23 388-411 1-23 (24)
41 PF09237 GAGA: GAGA factor; I 96.3 0.0034 7.3E-08 40.4 2.3 25 360-384 24-48 (54)
42 COG5189 SFP1 Putative transcri 96.2 0.0013 2.8E-08 59.3 0.1 50 332-381 348-419 (423)
43 PF12874 zf-met: Zinc-finger o 96.0 0.0026 5.6E-08 35.2 0.8 21 389-409 2-22 (25)
44 PF12874 zf-met: Zinc-finger o 96.0 0.0038 8.2E-08 34.5 1.5 22 361-382 1-22 (25)
45 PF09237 GAGA: GAGA factor; I 96.0 0.0031 6.7E-08 40.6 1.2 38 377-414 12-52 (54)
46 PF13909 zf-H2C2_5: C2H2-type 95.9 0.0047 1E-07 33.7 1.5 23 361-384 1-23 (24)
47 KOG2482|consensus 95.9 0.019 4.2E-07 52.5 6.1 145 266-410 129-357 (423)
48 PRK04860 hypothetical protein; 95.8 0.0045 9.8E-08 51.8 1.6 26 400-425 128-154 (160)
49 COG5236 Uncharacterized conser 95.8 0.0091 2E-07 54.6 3.4 126 171-303 151-305 (493)
50 COG5236 Uncharacterized conser 95.1 0.023 5.1E-07 52.0 3.9 73 334-412 221-306 (493)
51 PRK04860 hypothetical protein; 95.1 0.01 2.2E-07 49.7 1.5 35 360-398 119-154 (160)
52 KOG2482|consensus 95.0 0.083 1.8E-06 48.5 7.1 193 159-356 130-357 (423)
53 PF12171 zf-C2H2_jaz: Zinc-fin 95.0 0.0056 1.2E-07 34.6 -0.3 22 388-409 2-23 (27)
54 KOG1146|consensus 94.7 0.0075 1.6E-07 64.8 -0.3 146 282-429 439-633 (1406)
55 PF12171 zf-C2H2_jaz: Zinc-fin 94.3 0.011 2.4E-07 33.3 -0.1 21 361-381 2-22 (27)
56 PF13913 zf-C2HC_2: zinc-finge 93.9 0.05 1.1E-06 30.0 2.0 20 389-409 4-23 (25)
57 PF13913 zf-C2HC_2: zinc-finge 93.0 0.085 1.8E-06 29.1 2.0 19 362-381 4-22 (25)
58 KOG1146|consensus 92.3 0.085 1.8E-06 57.1 2.4 47 147-193 439-487 (1406)
59 KOG2785|consensus 91.8 1.2 2.6E-05 42.0 9.0 77 171-247 3-90 (390)
60 KOG2785|consensus 91.7 0.62 1.3E-05 43.9 7.0 50 360-409 166-242 (390)
61 KOG4173|consensus 91.3 0.14 3E-06 43.6 2.1 42 312-355 87-128 (253)
62 COG5048 FOG: Zn-finger [Genera 90.2 0.037 8.1E-07 54.8 -2.6 47 366-412 394-443 (467)
63 smart00451 ZnF_U1 U1-like zinc 90.1 0.21 4.5E-06 29.9 1.7 22 360-381 3-24 (35)
64 smart00451 ZnF_U1 U1-like zinc 90.1 0.19 4.1E-06 30.0 1.5 23 387-409 3-25 (35)
65 KOG2893|consensus 89.9 0.11 2.4E-06 45.2 0.4 43 307-352 11-53 (341)
66 KOG2893|consensus 89.8 0.093 2E-06 45.6 -0.1 48 333-383 10-58 (341)
67 cd00350 rubredoxin_like Rubred 87.6 0.27 5.8E-06 29.2 0.9 10 413-422 16-25 (33)
68 COG5048 FOG: Zn-finger [Genera 86.5 0.17 3.6E-06 50.1 -0.7 60 360-419 289-356 (467)
69 KOG2186|consensus 85.3 0.39 8.5E-06 42.4 1.1 44 308-353 5-48 (276)
70 PF12013 DUF3505: Protein of u 84.6 1.6 3.4E-05 34.1 4.2 25 388-412 81-109 (109)
71 PF09538 FYDLN_acid: Protein o 82.6 0.79 1.7E-05 35.6 1.6 12 360-371 26-37 (108)
72 PF12013 DUF3505: Protein of u 82.0 2.3 5E-05 33.2 4.1 25 361-385 81-109 (109)
73 COG2888 Predicted Zn-ribbon RN 80.4 1 2.3E-05 30.2 1.4 31 388-422 28-58 (61)
74 COG4049 Uncharacterized protei 79.8 0.8 1.7E-05 30.2 0.7 27 171-197 17-43 (65)
75 KOG4173|consensus 79.0 1.7 3.7E-05 37.2 2.6 77 280-358 80-171 (253)
76 TIGR00622 ssl1 transcription f 78.1 3.6 7.8E-05 32.0 3.9 24 279-302 81-104 (112)
77 PF09538 FYDLN_acid: Protein o 76.8 2.1 4.6E-05 33.2 2.4 9 254-262 28-36 (108)
78 COG4049 Uncharacterized protei 75.9 1.2 2.6E-05 29.4 0.6 25 388-412 18-42 (65)
79 cd00729 rubredoxin_SM Rubredox 74.2 1.4 3.1E-05 26.2 0.6 9 414-422 18-26 (34)
80 TIGR02098 MJ0042_CXXC MJ0042 f 72.0 1.3 2.7E-05 27.1 0.0 6 336-341 5-10 (38)
81 TIGR02300 FYDLN_acid conserved 69.9 2.8 6.1E-05 33.2 1.5 12 360-371 26-37 (129)
82 COG1997 RPL43A Ribosomal prote 69.4 1.5 3.4E-05 32.0 0.0 11 388-398 54-64 (89)
83 KOG2186|consensus 69.3 3 6.4E-05 37.1 1.7 46 172-219 4-49 (276)
84 smart00659 RPOLCX RNA polymera 68.2 2.3 5.1E-05 27.0 0.7 11 388-398 3-13 (44)
85 smart00734 ZnF_Rad18 Rad18-lik 67.4 4.7 0.0001 22.4 1.7 20 389-409 3-22 (26)
86 smart00531 TFIIE Transcription 67.4 3.7 8E-05 34.0 1.9 33 361-396 100-132 (147)
87 TIGR02300 FYDLN_acid conserved 66.9 3.8 8.3E-05 32.4 1.7 11 361-371 10-20 (129)
88 PF05443 ROS_MUCR: ROS/MUCR tr 66.0 3.5 7.7E-05 33.2 1.5 21 389-412 74-94 (132)
89 smart00531 TFIIE Transcription 65.5 3 6.5E-05 34.6 1.0 34 334-370 100-133 (147)
90 TIGR00373 conserved hypothetic 64.5 3.7 8E-05 34.5 1.4 16 334-349 110-125 (158)
91 PF10571 UPF0547: Uncharacteri 64.0 5.5 0.00012 22.1 1.6 8 255-262 17-24 (26)
92 TIGR00373 conserved hypothetic 63.3 7.5 0.00016 32.6 3.0 28 361-396 110-137 (158)
93 TIGR00622 ssl1 transcription f 62.4 6.7 0.00014 30.5 2.3 74 308-384 17-105 (112)
94 PF13717 zinc_ribbon_4: zinc-r 62.4 2.9 6.3E-05 25.3 0.3 8 336-343 5-12 (36)
95 PF13719 zinc_ribbon_5: zinc-r 62.2 3.2 6.8E-05 25.3 0.4 10 361-370 26-35 (37)
96 PF02892 zf-BED: BED zinc fing 61.9 6.1 0.00013 25.0 1.8 21 388-408 17-41 (45)
97 smart00834 CxxC_CXXC_SSSS Puta 61.6 1.6 3.5E-05 27.0 -1.0 7 362-368 7-13 (41)
98 smart00614 ZnF_BED BED zinc fi 61.2 5.9 0.00013 25.9 1.6 20 389-408 20-44 (50)
99 PF09986 DUF2225: Uncharacteri 60.8 1.5 3.2E-05 39.0 -1.8 12 389-400 50-61 (214)
100 PRK14890 putative Zn-ribbon RN 60.2 5.5 0.00012 26.9 1.3 10 333-342 25-34 (59)
101 PRK06266 transcription initiat 60.2 4.6 0.0001 34.6 1.2 15 334-348 118-132 (178)
102 PF15269 zf-C2H2_7: Zinc-finge 60.1 7.4 0.00016 24.4 1.8 21 361-381 21-41 (54)
103 PF09986 DUF2225: Uncharacteri 60.0 1.6 3.5E-05 38.7 -1.7 40 334-373 6-61 (214)
104 PF05443 ROS_MUCR: ROS/MUCR tr 58.7 6.4 0.00014 31.8 1.7 22 335-359 74-95 (132)
105 TIGR02605 CxxC_CxxC_SSSS putat 58.3 2.2 4.7E-05 28.2 -0.9 11 361-371 6-16 (52)
106 COG1996 RPC10 DNA-directed RNA 56.7 4.2 9.1E-05 26.4 0.3 10 361-370 7-16 (49)
107 PRK04023 DNA polymerase II lar 55.9 8.9 0.00019 41.3 2.6 8 335-342 628-635 (1121)
108 PRK06266 transcription initiat 55.3 9.5 0.00021 32.7 2.4 29 361-397 118-146 (178)
109 PF03604 DNA_RNApol_7kD: DNA d 53.7 8.3 0.00018 22.6 1.2 10 389-398 2-11 (32)
110 COG1592 Rubrerythrin [Energy p 53.0 7.3 0.00016 32.8 1.2 8 361-368 135-142 (166)
111 PRK00464 nrdR transcriptional 52.6 2.9 6.4E-05 34.8 -1.2 13 280-292 29-41 (154)
112 PRK04023 DNA polymerase II lar 52.1 11 0.00023 40.7 2.5 9 334-342 639-647 (1121)
113 PF04959 ARS2: Arsenite-resist 51.1 7.4 0.00016 34.3 1.0 23 388-410 78-100 (214)
114 PF08274 PhnA_Zn_Ribbon: PhnA 50.7 6.3 0.00014 22.7 0.4 8 360-367 19-26 (30)
115 COG1592 Rubrerythrin [Energy p 50.3 8.6 0.00019 32.4 1.2 22 334-367 135-156 (166)
116 PF14353 CpXC: CpXC protein 49.2 11 0.00024 30.3 1.7 13 388-400 39-51 (128)
117 PF09723 Zn-ribbon_8: Zinc rib 48.8 2.9 6.3E-05 26.3 -1.4 10 361-370 6-15 (42)
118 PF15269 zf-C2H2_7: Zinc-finge 48.7 15 0.00033 23.1 1.8 22 388-409 21-42 (54)
119 COG4957 Predicted transcriptio 47.3 12 0.00026 29.9 1.5 21 389-412 78-98 (148)
120 KOG4167|consensus 44.1 5.7 0.00012 40.9 -0.8 24 388-411 793-816 (907)
121 PF06524 NOA36: NOA36 protein; 42.9 15 0.00032 33.0 1.6 24 387-410 209-232 (314)
122 PRK09678 DNA-binding transcrip 40.3 6 0.00013 28.2 -1.0 7 392-398 34-40 (72)
123 KOG4167|consensus 39.9 7.7 0.00017 39.9 -0.6 26 171-196 792-817 (907)
124 KOG2593|consensus 38.3 27 0.00059 33.9 2.7 32 361-394 129-160 (436)
125 PF07754 DUF1610: Domain of un 37.6 15 0.00033 20.0 0.5 9 413-421 15-23 (24)
126 PF07975 C1_4: TFIIH C1-like d 37.2 6.8 0.00015 25.8 -1.0 24 360-383 21-44 (51)
127 PHA00626 hypothetical protein 36.7 15 0.00032 24.5 0.5 14 413-426 22-35 (59)
128 COG0068 HypF Hydrogenase matur 35.9 8.2 0.00018 39.9 -1.2 13 281-293 125-137 (750)
129 COG4957 Predicted transcriptio 35.9 16 0.00035 29.2 0.7 22 335-359 78-99 (148)
130 PF02176 zf-TRAF: TRAF-type zi 35.3 14 0.0003 24.9 0.3 18 348-365 25-43 (60)
131 PF05290 Baculo_IE-1: Baculovi 34.9 27 0.00059 28.0 1.8 13 253-265 122-134 (140)
132 PF13878 zf-C2H2_3: zinc-finge 34.4 39 0.00085 21.0 2.1 25 171-195 13-39 (41)
133 PF01363 FYVE: FYVE zinc finge 34.1 16 0.00035 25.6 0.4 9 362-370 11-19 (69)
134 COG4530 Uncharacterized protei 33.8 23 0.00051 27.1 1.2 29 332-370 8-36 (129)
135 PF09845 DUF2072: Zn-ribbon co 33.5 21 0.00045 28.6 1.0 12 361-372 2-13 (131)
136 TIGR00280 L37a ribosomal prote 33.4 10 0.00022 28.3 -0.7 11 415-425 54-64 (91)
137 COG1198 PriA Primosomal protei 31.8 12 0.00026 39.6 -0.8 40 361-423 445-484 (730)
138 PF06524 NOA36: NOA36 protein; 31.1 30 0.00065 31.1 1.6 39 194-233 138-179 (314)
139 PTZ00255 60S ribosomal protein 30.9 13 0.00028 27.7 -0.6 11 415-425 55-65 (90)
140 KOG4377|consensus 29.5 18 0.00039 34.7 0.0 21 392-412 408-428 (480)
141 COG5151 SSL1 RNA polymerase II 29.4 38 0.00081 31.3 2.0 48 335-383 364-411 (421)
142 PF03833 PolC_DP2: DNA polymer 29.4 18 0.00039 38.3 0.0 8 335-342 657-664 (900)
143 KOG0782|consensus 28.9 15 0.00033 36.7 -0.5 49 320-374 239-290 (1004)
144 TIGR01206 lysW lysine biosynth 28.6 19 0.00042 24.0 0.0 10 415-424 23-32 (54)
145 PF14446 Prok-RING_1: Prokaryo 28.3 9.7 0.00021 25.3 -1.4 27 361-398 6-32 (54)
146 PF08790 zf-LYAR: LYAR-type C2 27.8 11 0.00025 21.3 -1.0 8 363-370 3-10 (28)
147 KOG2807|consensus 27.6 82 0.0018 29.5 3.8 30 252-286 345-374 (378)
148 cd00065 FYVE FYVE domain; Zinc 27.3 39 0.00085 22.4 1.4 9 336-344 5-13 (57)
149 KOG2593|consensus 27.3 32 0.00069 33.5 1.2 32 334-368 129-161 (436)
150 KOG2807|consensus 26.7 66 0.0014 30.1 3.1 30 306-340 345-374 (378)
151 PF10013 DUF2256: Uncharacteri 26.6 37 0.0008 21.2 1.0 15 389-403 10-24 (42)
152 smart00154 ZnF_AN1 AN1-like Zi 25.9 28 0.00061 21.4 0.4 14 414-427 12-25 (39)
153 COG3091 SprT Zn-dependent meta 24.8 26 0.00056 28.8 0.2 9 361-370 118-126 (156)
154 COG1571 Predicted DNA-binding 24.7 41 0.00089 32.9 1.5 31 305-346 349-380 (421)
155 PRK03976 rpl37ae 50S ribosomal 24.5 16 0.00035 27.2 -1.0 11 415-425 55-65 (90)
156 PRK00432 30S ribosomal protein 24.4 32 0.0007 22.5 0.5 8 361-368 38-45 (50)
157 PLN02294 cytochrome c oxidase 24.0 23 0.0005 29.7 -0.3 17 408-424 135-151 (174)
158 PF13451 zf-trcl: Probable zin 23.6 42 0.00091 21.9 0.9 11 361-371 5-15 (49)
159 PF04959 ARS2: Arsenite-resist 23.5 54 0.0012 29.0 1.9 27 171-197 77-103 (214)
160 PF04216 FdhE: Protein involve 23.2 7.3 0.00016 36.4 -3.8 74 334-424 173-248 (290)
161 KOG1280|consensus 22.2 65 0.0014 30.4 2.2 34 361-394 80-116 (381)
162 PF07282 OrfB_Zn_ribbon: Putat 21.9 46 0.001 23.2 1.0 9 388-396 47-55 (69)
163 KOG3408|consensus 21.8 46 0.001 26.2 1.0 22 388-409 58-79 (129)
164 PF10263 SprT-like: SprT-like 21.3 22 0.00049 29.5 -0.9 7 335-341 125-131 (157)
165 KOG0717|consensus 21.3 55 0.0012 32.2 1.6 22 388-409 293-314 (508)
166 PRK04351 hypothetical protein; 21.1 35 0.00076 28.3 0.3 12 386-397 131-142 (149)
167 PRK12380 hydrogenase nickel in 20.8 40 0.00086 26.5 0.5 10 361-370 71-80 (113)
168 KOG3408|consensus 20.8 54 0.0012 25.8 1.2 22 360-381 57-78 (129)
169 COG0068 HypF Hydrogenase matur 20.6 25 0.00055 36.5 -0.8 15 254-268 125-139 (750)
170 smart00064 FYVE Protein presen 20.4 51 0.0011 22.8 0.9 10 335-344 12-21 (68)
171 PF14445 Prok-RING_2: Prokaryo 20.2 31 0.00068 22.4 -0.2 12 360-371 7-18 (57)
No 1
>KOG2462|consensus
Probab=99.95 E-value=5.5e-29 Score=216.10 Aligned_cols=131 Identities=32% Similarity=0.661 Sum_probs=122.2
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHhCCCC----CCCCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHH
Q psy8466 278 IKNKCDLCSKEFSTKSYLTEHMKLHQGLK----NKCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHM 353 (431)
Q Consensus 278 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~----~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~ 353 (431)
.+|+|+.||+.+.+.+.|.+|.++|.... +.|++||+.|.+...|+.|+++|+ ...+|.+|||.|.+.+-|+.|+
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHI 207 (279)
T ss_pred CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhccc
Confidence 46899999999999999999999996432 489999999999999999999998 3579999999999999999999
Q ss_pred hhhCCC-cccccccccccCCHHHHHHHHHHhCCCC-CcccccccccCChHHHHHHHHh
Q psy8466 354 NLHQGI-RYKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 354 ~~h~~~-~~~C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
|+|+|+ ||.|+.|+++|+.+++|+.|+++|.+.+ |+|..|+|.|..++.|.+|.-.
T Consensus 208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 999997 9999999999999999999999999988 9999999999999999999754
No 2
>KOG2462|consensus
Probab=99.95 E-value=1.8e-28 Score=212.96 Aligned_cols=129 Identities=35% Similarity=0.723 Sum_probs=115.5
Q ss_pred CCCCCcCCcccCChhHHHHHHhHhcCCC----CCCCCCCcccCCHHHHHHHHHHhCCCCCCCCchhhccCChhHHHHHHH
Q psy8466 252 KNKCDLCSKEFSTKSYLTEHMKLHQGIK----NKCDLCSKEFSTKSYLTEHMKLHQGLKNKCDLCSKEFSRKSYLTEHMK 327 (431)
Q Consensus 252 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~ 327 (431)
+++|+.||+.+.+.++|.+|..+|.... +.|+.||+.|.+...|+.|+++|+ ...+|.+|||.|...+.|+.|+|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccc
Confidence 4589999999999999999999886432 789999999999999999999998 35689999999999999999999
Q ss_pred HhcCCC-CccccchhccCCchHHHHHHhhhCCC-cccccccccccCCHHHHHHHHH
Q psy8466 328 LHQGIK-NKCDLCSKEFSHKSNLTKHMNLHQGI-RYKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 328 ~h~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~L~~H~~ 381 (431)
+|+|++ |.|+.|+++|..+++|+.||++|.+. +|+|..|+|+|+..+.|.+|..
T Consensus 209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 999999 79999999999999999999999885 8999999999999999999965
No 3
>KOG3608|consensus
Probab=99.94 E-value=3e-27 Score=209.93 Aligned_cols=210 Identities=29% Similarity=0.537 Sum_probs=145.6
Q ss_pred cccccccCCHHHHHHHHHHhcCC--------------CCcc--CccCcccCCHhHHHHHHHHhcCCCC-CCCcCCcccCC
Q psy8466 202 DLCSKEFSSKSYLTEHMKLHQGI--------------KNKC--DLCSKEFSTKSYLTEHMKLHQGIKN-KCDLCSKEFST 264 (431)
Q Consensus 202 ~~C~~~f~~~~~L~~H~~~h~~~--------------~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~-~C~~C~~~f~~ 264 (431)
..|+..|.+...|..|+..|.-. .+.| ..|.+.|.++..|+.|++.|++++. .|+.||..|.+
T Consensus 140 edCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~ 219 (467)
T KOG3608|consen 140 EDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRT 219 (467)
T ss_pred hhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhcc
Confidence 45777777777777777665321 0223 3477777777777777777777766 77777777777
Q ss_pred hhHHHHHHhHhcC---CCCCCCCCCcccCCHHHHHHHHHHhCCCCCCCCchhhccCChhHHHHHHHH-hcCCC-Cccccc
Q psy8466 265 KSYLTEHMKLHQG---IKNKCDLCSKEFSTKSYLTEHMKLHQGLKNKCDLCSKEFSRKSYLTEHMKL-HQGIK-NKCDLC 339 (431)
Q Consensus 265 ~~~l~~H~~~h~~---~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~-~~C~~C 339 (431)
+..|..|++..+. ..|+|..|.+.|.+...|..|+..|-. -++|+.|+......+.|..|++. |...+ ++|+.|
T Consensus 220 ~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~C 298 (467)
T KOG3608|consen 220 KTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDEC 298 (467)
T ss_pred ccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccCCCccccch
Confidence 7777777765543 236777777777777777777776653 46777777777777777777764 44444 577777
Q ss_pred hhccCCchHHHHHHhhhCCCcccccc--cccccCCHHHHHHHHHHhC-CC---CCcccccccccCChHHHHHHHHhcCC
Q psy8466 340 SKEFSHKSNLTKHMNLHQGIRYKCDL--CSKEFSWKGHLTEHRKLHQ-DI---KNKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 340 ~k~f~~~~~L~~H~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~H~-~~---~~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
++.|.+.+.|.+|..+|...-|.|.. |..+|.+...|++|++.++ |. +|.|..|++.|++-.+|..|++..||
T Consensus 299 d~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 299 DTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred hhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence 77777777777777777755677776 7777777777777776443 32 27777777777777777777766665
No 4
>KOG1074|consensus
Probab=99.94 E-value=4.4e-28 Score=237.06 Aligned_cols=50 Identities=32% Similarity=0.614 Sum_probs=46.4
Q ss_pred ccccccccCCHHHHHHHHHHhCCCC-CcccccccccCChHHHHHHHHhcCC
Q psy8466 363 CDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 363 C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
|..||+.|...+.|..|+|+|++.| |.|.+|++.|..+.+|+.||.+|.+
T Consensus 882 C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w 932 (958)
T KOG1074|consen 882 CNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMW 932 (958)
T ss_pred hccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccc
Confidence 9999999999999999999999888 8999999999999999999999987
No 5
>KOG3608|consensus
Probab=99.93 E-value=3.8e-26 Score=202.93 Aligned_cols=201 Identities=27% Similarity=0.553 Sum_probs=138.0
Q ss_pred CccCcccCCHhHHHHHHHHhcC------------CCC--CCC--cCCcccCChhHHHHHHhHhcCCC-CCCCCCCcccCC
Q psy8466 229 DLCSKEFSTKSYLTEHMKLHQG------------IKN--KCD--LCSKEFSTKSYLTEHMKLHQGIK-NKCDLCSKEFST 291 (431)
Q Consensus 229 ~~C~~~f~~~~~L~~H~~~h~~------------~~~--~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~ 291 (431)
..|+..|.+...|.+|+-.|.. +++ .|. .|.+.|.+++.|+.|++.|++++ ..|+.||..|.+
T Consensus 140 edCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~ 219 (467)
T KOG3608|consen 140 EDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRT 219 (467)
T ss_pred hhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhcc
Confidence 3477777777777777766531 112 343 37777777777777777777776 467777777777
Q ss_pred HHHHHHHHHHhCC---CCCCCCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHHhhhCC--Cccccccc
Q psy8466 292 KSYLTEHMKLHQG---LKNKCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHMNLHQG--IRYKCDLC 366 (431)
Q Consensus 292 ~~~L~~H~~~h~~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--~~~~C~~C 366 (431)
+..|..|++..+. ..+.|..|.+.|.+...|..|+..|-. -|+|+.|+.+....++|..|++.-+. +||+|+.|
T Consensus 220 ~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~C 298 (467)
T KOG3608|consen 220 KTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDEC 298 (467)
T ss_pred ccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccCCCccccch
Confidence 7777777765432 234777777777777777777766653 37777777777777777777776443 36777777
Q ss_pred ccccCCHHHHHHHHHHhCCCCCcccc--cccccCChHHHHHHHHhcC-C---CCCccCccccccCCCCCC
Q psy8466 367 SKEFSWKGHLTEHRKLHQDIKNKCDL--CSKEFSSKRILTEHMKLHQ-G---ITYKCGLCSKEFSCKSNL 430 (431)
Q Consensus 367 ~~~f~~~~~L~~H~~~H~~~~~~C~~--C~~~F~~~~~L~~H~~~H~-g---~~~~C~~C~~~f~~~~~l 430 (431)
++.|.+.+.|.+|..+|.+.-|+|.. |..+|++...|++|++.++ | .+|.|..|++.|++-.+|
T Consensus 299 d~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L 368 (467)
T KOG3608|consen 299 DTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSL 368 (467)
T ss_pred hhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhH
Confidence 77777777777777777755577776 7777777777777777655 4 457777777777766554
No 6
>KOG1074|consensus
Probab=99.92 E-value=8.4e-27 Score=228.13 Aligned_cols=54 Identities=33% Similarity=0.735 Sum_probs=49.2
Q ss_pred cccccccccccCChHHHHHHHHHhcCCC-CcccccccccCCHHHHHHHHHHhcCC
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLHQGLK-NKCDLCSKEFSSKSYLTEHMKLHQGI 224 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~ 224 (431)
+++|.+|.++|.+.+.|+.|+|.|+|++ |+|.+||..|.++.+|+.|...|+..
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~ 407 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREK 407 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeecccc
Confidence 5789999999999999999999999987 89999999999999999998887653
No 7
>KOG3623|consensus
Probab=99.88 E-value=4.1e-23 Score=199.03 Aligned_cols=69 Identities=38% Similarity=0.787 Sum_probs=56.2
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCC-CcccccccccCChHHHHHHHHhcCC-CCCccCccccccCCCCC
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEFSCKSN 429 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~~C~~~F~~~~~L~~H~~~H~g-~~~~C~~C~~~f~~~~~ 429 (431)
|.|+.|+|.|...++|.+|.-.|+|.+ |+|.+|.|+|+.+-.|..|+|.|.| +||+|..|+|.|+..+.
T Consensus 895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGS 965 (1007)
T KOG3623|consen 895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGS 965 (1007)
T ss_pred chHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccc
Confidence 668888888888888888888888877 7888888888888888888888888 78888888888877653
No 8
>KOG3623|consensus
Probab=99.83 E-value=2.2e-21 Score=187.28 Aligned_cols=103 Identities=32% Similarity=0.574 Sum_probs=85.3
Q ss_pred ccccccccccccChhHHHhhhhhcCCc---cccccccccccCChHHHHHHHHHhcC--------------CCCccccccc
Q psy8466 144 VKVKSDHERRSINYKCQEKHMKLHQGV---RYKCDLCSKKFSTKSYLTAHMKLHQG--------------LKNKCDLCSK 206 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~h~~~~~~~---~~~C~~C~~~f~~~~~L~~H~~~h~~--------------~~~~C~~C~~ 206 (431)
+..|..|.+.+.+...++.|++....+ .|.|..|..+|..+..|.+||.+|.. .+|+|..|++
T Consensus 210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK 289 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK 289 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence 345777888888888888887765443 58899999999999999999988743 2489999999
Q ss_pred ccCCHHHHHHHHHHhcCCC-CccCccCcccCCHhHHHHHHH
Q psy8466 207 EFSSKSYLTEHMKLHQGIK-NKCDLCSKEFSTKSYLTEHMK 246 (431)
Q Consensus 207 ~f~~~~~L~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~ 246 (431)
.|..+..|+.|+|+|.|++ |.|+.|+|+|.....+..||.
T Consensus 290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred hhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence 9999999999999999977 799999999998888888873
No 9
>KOG3576|consensus
Probab=99.66 E-value=2.9e-17 Score=135.75 Aligned_cols=105 Identities=32% Similarity=0.689 Sum_probs=67.7
Q ss_pred CCCchhhccCChhHHHHHHHHhcCCC-CccccchhccCCchHHHHHHhhhCCC-cccccccccccCCHHHHHHHHHHhCC
Q psy8466 308 KCDLCSKEFSRKSYLTEHMKLHQGIK-NKCDLCSKEFSHKSNLTKHMNLHQGI-RYKCDLCSKEFSWKGHLTEHRKLHQD 385 (431)
Q Consensus 308 ~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~L~~H~~~H~~ 385 (431)
.|.+|++.|.....|.+|++-|...+ +.|..||+.|.....|++|+|+|+|. ||+|..|+++|++.-+|..|++.-+|
T Consensus 119 tCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhg 198 (267)
T KOG3576|consen 119 TCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHG 198 (267)
T ss_pred eeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcC
Confidence 45555555555555555555555444 55777777777777777777777775 67777777777777777777653222
Q ss_pred -----------CC-CcccccccccCChHHHHHHHHhcCC
Q psy8466 386 -----------IK-NKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 386 -----------~~-~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
.+ |.|..||..-.....+..|++.|+.
T Consensus 199 v~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 199 VQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred chHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 12 5677777777777777777777764
No 10
>KOG3576|consensus
Probab=99.57 E-value=7.9e-16 Score=127.34 Aligned_cols=118 Identities=29% Similarity=0.629 Sum_probs=70.1
Q ss_pred CCCCcCCcccCChhHHHHHHhHhcCCC-CCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCchhhccCChhHHHHHHHHhc
Q psy8466 253 NKCDLCSKEFSTKSYLTEHMKLHQGIK-NKCDLCSKEFSTKSYLTEHMKLHQGLKN-KCDLCSKEFSRKSYLTEHMKLHQ 330 (431)
Q Consensus 253 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~h~ 330 (431)
+.|.+|++.|.-...|++|++-|...+ +.|..||+.|....+|++|+++|+|.++ +|..|+++|..+-.|..|++.-+
T Consensus 118 ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvh 197 (267)
T KOG3576|consen 118 FTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVH 197 (267)
T ss_pred eeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHc
Confidence 467777777777777777777776544 5666666666666666666666666653 66666666666666666665444
Q ss_pred CCCCccccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHHHHHhCC
Q psy8466 331 GIKNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKLHQD 385 (431)
Q Consensus 331 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~ 385 (431)
|.... | .+ +.-..+-|.|..||.+-.....+..|++.|+.
T Consensus 198 gv~~~-------y----ay----kerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 198 GVQHQ-------Y----AY----KERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred CchHH-------H----HH----HHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 42100 0 00 00001136666676666666666666665543
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.38 E-value=5.4e-13 Score=131.01 Aligned_cols=141 Identities=18% Similarity=0.405 Sum_probs=64.7
Q ss_pred CCCcCCcccCChhHHHHHHhHhcCCCCCCCC--CCcccCCHHHHHHHHHHhCCCCCCCCchhhccCChhHHHHHHHHhcC
Q psy8466 254 KCDLCSKEFSTKSYLTEHMKLHQGIKNKCDL--CSKEFSTKSYLTEHMKLHQGLKNKCDLCSKEFSRKSYLTEHMKLHQG 331 (431)
Q Consensus 254 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 331 (431)
.|+.|..... ...|..|........-.|+. ||..|. +..|..|+ .|+.|++.|. ...|..|+++|+
T Consensus 409 ~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~~H~--------~C~~Cgk~f~-~s~LekH~~~~H- 476 (567)
T PLN03086 409 ECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLR-VEEAKNHV--------HCEKCGQAFQ-QGEMEKHMKVFH- 476 (567)
T ss_pred ECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceee-ccccccCc--------cCCCCCCccc-hHHHHHHHHhcC-
Confidence 4555555443 33444555333222234542 555552 22223331 4555555553 344555555543
Q ss_pred CCCccccchhccCCchHHHHHHhhhCCC-cccccccccccC----------CHHHHHHHHHHhCCCCCcccccccccCCh
Q psy8466 332 IKNKCDLCSKEFSHKSNLTKHMNLHQGI-RYKCDLCSKEFS----------WKGHLTEHRKLHQDIKNKCDLCSKEFSSK 400 (431)
Q Consensus 332 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~----------~~~~L~~H~~~H~~~~~~C~~C~~~F~~~ 400 (431)
..+.|+ ||+.+ .+..|..|+++|.+. ++.|..|++.|. ....|..|..++....+.|..||+.|..+
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr 554 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK 554 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh
Confidence 234555 55433 335555555555443 455555555553 12345555555433335555555555432
Q ss_pred HHHHHHHHh
Q psy8466 401 RILTEHMKL 409 (431)
Q Consensus 401 ~~L~~H~~~ 409 (431)
.|..|+..
T Consensus 555 -dm~~H~~~ 562 (567)
T PLN03086 555 -EMDIHQIA 562 (567)
T ss_pred -hHHHHHHH
Confidence 34444433
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.30 E-value=5.4e-12 Score=124.02 Aligned_cols=133 Identities=19% Similarity=0.446 Sum_probs=81.7
Q ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCCCCCc--hhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHHhhhCC
Q psy8466 281 KCDLCSKEFSTKSYLTEHMKLHQGLKNKCDL--CSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHMNLHQG 358 (431)
Q Consensus 281 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~ 358 (431)
.|+.|.+..... .|..|...-.-..-.|+. ||..|. +..+..| +.|+.|++.|. ...|..|+++|+
T Consensus 409 ~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~~H--------~~C~~Cgk~f~-~s~LekH~~~~H- 476 (567)
T PLN03086 409 ECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLR-VEEAKNH--------VHCEKCGQAFQ-QGEMEKHMKVFH- 476 (567)
T ss_pred ECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceee-ccccccC--------ccCCCCCCccc-hHHHHHHHHhcC-
Confidence 577776655433 444665433322236663 777663 3333443 26777777774 566777777765
Q ss_pred CcccccccccccCCHHHHHHHHHHhCCCC-CcccccccccC----------ChHHHHHHHHhcCCCCCccCccccccCCC
Q psy8466 359 IRYKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLCSKEFS----------SKRILTEHMKLHQGITYKCGLCSKEFSCK 427 (431)
Q Consensus 359 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~~C~~~F~----------~~~~L~~H~~~H~g~~~~C~~C~~~f~~~ 427 (431)
.+|.|+ ||+.+ .+..|..|+++|...+ +.|.+|++.|. ..+.|..|+.++.++++.|..||+.|..+
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr 554 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK 554 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh
Confidence 567777 77544 5577777777776666 67777777774 23467777777644777777777776543
No 13
>PHA02768 hypothetical protein; Provisional
Probab=99.09 E-value=6.5e-11 Score=77.94 Aligned_cols=42 Identities=14% Similarity=0.429 Sum_probs=31.5
Q ss_pred CcccccccccCChHHHHHHHHhcCCCCCccCccccccCCCCCC
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQGITYKCGLCSKEFSCKSNL 430 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~g~~~~C~~C~~~f~~~~~l 430 (431)
|.|+.||+.|...+.|..||++|+ +||+|..|++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence 677777777777777777777777 577777777777777665
No 14
>PHA00733 hypothetical protein
Probab=99.05 E-value=2e-10 Score=92.38 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=61.8
Q ss_pred CccccchhccCCchHHH------HHHhhhCCCcccccccccccCCHHHHHHHHHHhCCCCCcccccccccCChHHHHHHH
Q psy8466 334 NKCDLCSKEFSHKSNLT------KHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFSSKRILTEHM 407 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~------~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~~~~~L~~H~ 407 (431)
+.|.+|.+.|..+..|. +|+..+...||.|+.||+.|.+...|..|++.| ..+|.|..|++.|.....|..|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~ 119 (128)
T PHA00733 41 LIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHV 119 (128)
T ss_pred HHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHH
Confidence 46777776666555444 444455556899999999999999999999876 33589999999999999999999
Q ss_pred HhcCCC
Q psy8466 408 KLHQGI 413 (431)
Q Consensus 408 ~~H~g~ 413 (431)
...|+.
T Consensus 120 ~~~h~~ 125 (128)
T PHA00733 120 CKKHNI 125 (128)
T ss_pred HHhcCc
Confidence 988873
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.88 E-value=8.8e-10 Score=72.64 Aligned_cols=42 Identities=17% Similarity=0.372 Sum_probs=25.2
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccccccCChHHH
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFSSKRIL 403 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~~~~~L 403 (431)
|.|+.||+.|+..+.|..|+++|+ .+|+|..|++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence 556666666666666666666665 345666666666655544
No 16
>PHA00733 hypothetical protein
Probab=98.85 E-value=1.9e-09 Score=86.75 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=53.6
Q ss_pred CCCchhhccCChhHHHH------HHHHhcCCCCccccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHHHH
Q psy8466 308 KCDLCSKEFSRKSYLTE------HMKLHQGIKNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 308 ~C~~C~~~f~~~~~l~~------H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~ 381 (431)
.|.+|.+.|.....|.. |+..+....|.|+.|++.|.+...|..|++.| ..+|.|+.|++.|.....|..|++
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~ 120 (128)
T PHA00733 42 IRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVC 120 (128)
T ss_pred HHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHH
Confidence 45555555555444443 33334434478888888888888888888876 346888888888888888888887
Q ss_pred HhCC
Q psy8466 382 LHQD 385 (431)
Q Consensus 382 ~H~~ 385 (431)
..++
T Consensus 121 ~~h~ 124 (128)
T PHA00733 121 KKHN 124 (128)
T ss_pred HhcC
Confidence 6654
No 17
>KOG3993|consensus
Probab=98.69 E-value=1.9e-09 Score=99.55 Aligned_cols=186 Identities=20% Similarity=0.301 Sum_probs=112.5
Q ss_pred cccccccccccCChHHHHHHHH--HhcCCCCcccccccccCCHHHHHHHHHHhcCCCCcc----CccCcccCCHhHHHHH
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMK--LHQGLKNKCDLCSKEFSSKSYLTEHMKLHQGIKNKC----DLCSKEFSTKSYLTEH 244 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~--~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C----~~C~~~f~~~~~L~~H 244 (431)
-|.|..|...|.....|.+|.- +-+ ..|+|+.|+|.|+...+|..|.|.|....-.- +-=.+...+....+.-
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~-vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea 345 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVH-VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA 345 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEE-eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence 5999999999999999999963 222 24999999999999999999999986432100 0000000000000000
Q ss_pred HHH---hcCCCCCCCcCCcccCChhHHHHHHhHhcCCC------------------CCCCCCCcccCCHHHHHHHHHHhC
Q psy8466 245 MKL---HQGIKNKCDLCSKEFSTKSYLTEHMKLHQGIK------------------NKCDLCSKEFSTKSYLTEHMKLHQ 303 (431)
Q Consensus 245 ~~~---h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~------------------~~C~~C~~~f~~~~~L~~H~~~h~ 303 (431)
.+. -...-+.|.+|++.|.....|+.|+.+|+... +-|..|+-.+.....-..+...+.
T Consensus 346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a 425 (500)
T KOG3993|consen 346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA 425 (500)
T ss_pred cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence 000 00112367777777777777777776665321 135555544444333223322222
Q ss_pred C--CCCCCCchhhccCChhHHHHHHHHhcCCC-CccccchhccCCchHHHHHHhhhC
Q psy8466 304 G--LKNKCDLCSKEFSRKSYLTEHMKLHQGIK-NKCDLCSKEFSHKSNLTKHMNLHQ 357 (431)
Q Consensus 304 ~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~k~f~~~~~L~~H~~~h~ 357 (431)
+ +...|+.|+..+.++..--.+.+.-.... |.|.+|...|.+...|.+|+...|
T Consensus 426 ~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 426 GSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH 482 (500)
T ss_pred ccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence 2 22367888877776655444444333223 789999999999999999987644
No 18
>KOG3993|consensus
Probab=98.69 E-value=1.3e-09 Score=100.54 Aligned_cols=184 Identities=18% Similarity=0.258 Sum_probs=119.6
Q ss_pred CcccccccccCCHHHHHHHHHHhc-CCCCccCccCcccCCHhHHHHHHHHhcCCCCCC----CcCCcccCChhHHHHHHh
Q psy8466 199 NKCDLCSKEFSSKSYLTEHMKLHQ-GIKNKCDLCSKEFSTKSYLTEHMKLHQGIKNKC----DLCSKEFSTKSYLTEHMK 273 (431)
Q Consensus 199 ~~C~~C~~~f~~~~~L~~H~~~h~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C----~~C~~~f~~~~~l~~H~~ 273 (431)
|.|..|...|.+...|.+|.-.-. ...|+|+.|+|.|....+|..|.|+|....-.- +-=.+...+....+.-.+
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 789999999999999999964322 134899999999999999999999996432200 000001111111111111
Q ss_pred H---hcCCCCCCCCCCcccCCHHHHHHHHHHhCCCC------------------CCCCchhhccCChhHHHHHHHHhcCC
Q psy8466 274 L---HQGIKNKCDLCSKEFSTKSYLTEHMKLHQGLK------------------NKCDLCSKEFSRKSYLTEHMKLHQGI 332 (431)
Q Consensus 274 ~---h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~------------------~~C~~C~~~f~~~~~l~~H~~~h~~~ 332 (431)
. -...-|.|..|++.|+.+..|+.|+.+|+... +.|..|+-.+.....--.+...+.+.
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~s 427 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGS 427 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecc
Confidence 0 11123899999999999999999988876321 13555555444433222222222221
Q ss_pred --CCccccchhccCCchHHHHHHhhhCC-CcccccccccccCCHHHHHHHHHH
Q psy8466 333 --KNKCDLCSKEFSHKSNLTKHMNLHQG-IRYKCDLCSKEFSWKGHLTEHRKL 382 (431)
Q Consensus 333 --~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~L~~H~~~ 382 (431)
...|++|+..+.++..-..|.+.-.. .-|.|.+|...|.+...|.+|+..
T Consensus 428 ael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 428 AELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred ccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence 24788999888777665555543222 259999999999999999999764
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.58 E-value=3.1e-08 Score=55.77 Aligned_cols=25 Identities=48% Similarity=0.897 Sum_probs=19.6
Q ss_pred HHHHHHHhcCC-CCCccCccccccCC
Q psy8466 402 ILTEHMKLHQG-ITYKCGLCSKEFSC 426 (431)
Q Consensus 402 ~L~~H~~~H~g-~~~~C~~C~~~f~~ 426 (431)
+|..||++|+| +||.|++|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47788888888 78888888888863
No 20
>PHA00732 hypothetical protein
Probab=98.31 E-value=4.1e-07 Score=66.20 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=26.3
Q ss_pred cccccccccccCCHHHHHHHHHH-hCCCCCcccccccccCChHHHHHHHHhcCC
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKL-HQDIKNKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
||.|+.||+.|.+...|..|++. |.+ +.|+.||+.|. .|..|++++..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~--~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL--TKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC--CccCCCCCEeC---ChhhhhcccCC
Confidence 35566666666666666666553 432 35666666665 35555554443
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.30 E-value=4.1e-07 Score=51.15 Aligned_cols=23 Identities=52% Similarity=1.029 Sum_probs=11.4
Q ss_pred HHHHHhhhCCC-cccccccccccC
Q psy8466 349 LTKHMNLHQGI-RYKCDLCSKEFS 371 (431)
Q Consensus 349 L~~H~~~h~~~-~~~C~~C~~~f~ 371 (431)
|.+|+++|+|+ ||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 44555555544 455555555543
No 22
>PHA00616 hypothetical protein
Probab=98.26 E-value=4.4e-07 Score=56.92 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=24.9
Q ss_pred CcccccccccCChHHHHHHHHhcCC-CCCccCcccccc
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQG-ITYKCGLCSKEF 424 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~g-~~~~C~~C~~~f 424 (431)
|+|+.||+.|..++.|..|++.||| .|+.|++=--.|
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f 39 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence 6677777777777777777777777 666665543333
No 23
>PHA00616 hypothetical protein
Probab=98.14 E-value=1.3e-06 Score=54.89 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=21.3
Q ss_pred cccccccccccCCHHHHHHHHHHhCCCC-Cccc
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCD 391 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~ 391 (431)
||+|+.||+.|..++.|..|++.|+|.+ +.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 4667777777777777777777666655 5554
No 24
>PHA00732 hypothetical protein
Probab=98.11 E-value=1.7e-06 Score=62.95 Aligned_cols=47 Identities=28% Similarity=0.501 Sum_probs=30.0
Q ss_pred CccccchhccCCchHHHHHHhh-hCCCcccccccccccCCHHHHHHHHHHhCC
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNL-HQGIRYKCDLCSKEFSWKGHLTEHRKLHQD 385 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~ 385 (431)
|.|+.|++.|.+...|..|++. |. ++.|+.||+.|. .|..|.+.+.+
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccCC
Confidence 4567777777777777777663 44 356777777776 46666655544
No 25
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.09 E-value=4.8e-06 Score=56.24 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=30.3
Q ss_pred ccccccccccCCHHHHHHHHH-HhCCCC--CcccccccccCChHHHHHHHHhcCC
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRK-LHQDIK--NKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~-~H~~~~--~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
|.|++|++ ..+...|..|.. .|.+.+ +.|++|...+. ..|..||..+|+
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 66777777 444566777754 444332 67777776544 377777776654
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.91 E-value=1.7e-05 Score=53.61 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCccccchhccCCchHHHHHHhhhC-CC--cccccccccccCCHHHHHHHHHHhC
Q psy8466 333 KNKCDLCSKEFSHKSNLTKHMNLHQ-GI--RYKCDLCSKEFSWKGHLTEHRKLHQ 384 (431)
Q Consensus 333 ~~~C~~C~k~f~~~~~L~~H~~~h~-~~--~~~C~~C~~~f~~~~~L~~H~~~H~ 384 (431)
.|.||+|++ ..+...|..|....+ .. .+.|++|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 356777777 344566777765533 22 467777776544 37777766544
No 27
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.90 E-value=5.9e-06 Score=63.98 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=13.9
Q ss_pred cccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHHHHHhCCCCCcccccccccCChHHHHHHHHhc
Q psy8466 336 CDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 336 C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~~~~~L~~H~~~H 410 (431)
|.+|+..|.+...|..|+...++.... ....+.....+..+.+.-....+.|.+|++.|.+...|..||+.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 555555555555555555544442111 111222333333343332233455666666666666666666553
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.83 E-value=9e-06 Score=44.32 Aligned_cols=21 Identities=52% Similarity=0.936 Sum_probs=10.3
Q ss_pred cccccccccCChHHHHHHHHh
Q psy8466 389 KCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~ 409 (431)
.|+.|++.|.++..|..|+++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 444455555555555555444
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.81 E-value=1.3e-05 Score=43.70 Aligned_cols=23 Identities=48% Similarity=0.954 Sum_probs=15.8
Q ss_pred ccccccccccCCHHHHHHHHHHh
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLH 383 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H 383 (431)
|.|+.|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 56777777777777777776654
No 30
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.72 E-value=2e-05 Score=60.93 Aligned_cols=71 Identities=25% Similarity=0.462 Sum_probs=14.2
Q ss_pred CCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHHHHH
Q psy8466 309 CDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKL 382 (431)
Q Consensus 309 C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~ 382 (431)
|..|+..|.+...|..|+...++.... ....+.....+..+++.-....+.|..|++.|.+...|..|++.
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS 72 (100)
T ss_dssp --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence 555555555555555555544433211 11112233333344333222346666666666666666666664
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.55 E-value=4.6e-05 Score=41.81 Aligned_cols=22 Identities=45% Similarity=0.952 Sum_probs=10.6
Q ss_pred cccccccccCChHHHHHHHHhc
Q psy8466 389 KCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~H 410 (431)
.|++|++.|.+...|..|+++|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHhh
Confidence 4555555555555555555544
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.43 E-value=0.0001 Score=40.37 Aligned_cols=23 Identities=35% Similarity=0.872 Sum_probs=13.9
Q ss_pred ccccccccccCCHHHHHHHHHHh
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLH 383 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H 383 (431)
|.|++|++.|.+...|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 45666666666666666666655
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.30 E-value=0.00013 Score=41.35 Aligned_cols=24 Identities=42% Similarity=0.832 Sum_probs=13.7
Q ss_pred cccccccccccCCHHHHHHHHHHh
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLH 383 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H 383 (431)
||.|..|++.|.+...|..|++.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 355555555555555555555554
No 34
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.03 E-value=0.00034 Score=39.65 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=18.6
Q ss_pred cccccccccccCChHHHHHHHHHhc
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLHQ 195 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h~ 195 (431)
||.|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4677777777777777777777664
No 35
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.86 E-value=0.00098 Score=37.00 Aligned_cols=22 Identities=50% Similarity=0.921 Sum_probs=12.6
Q ss_pred cccccccccCChHHHHHHHHhc
Q psy8466 389 KCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~H 410 (431)
.|..|++.|.....|..|++.|
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHHh
Confidence 4555555555555555555544
No 36
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.73 E-value=0.0013 Score=36.55 Aligned_cols=24 Identities=42% Similarity=0.801 Sum_probs=19.6
Q ss_pred ccccccccccCCHHHHHHHHHHhC
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQ 384 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~ 384 (431)
|.|+.|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 578888888888888888888764
No 37
>KOG2231|consensus
Probab=96.72 E-value=0.0032 Score=63.75 Aligned_cols=39 Identities=28% Similarity=0.682 Sum_probs=22.3
Q ss_pred CccCccCcccCCHhHHHHHHHHhcCCCCCCCcCCcccCChhHHHHHHhHhc
Q psy8466 226 NKCDLCSKEFSTKSYLTEHMKLHQGIKNKCDLCSKEFSTKSYLTEHMKLHQ 276 (431)
Q Consensus 226 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 276 (431)
+.|.+|+..|.-.. .+..|..| ..|.+...|+.|+..-|
T Consensus 100 ~~C~~C~~~~~~~~-----------~~~~~~~c-~~~~s~~~Lk~H~~~~H 138 (669)
T KOG2231|consen 100 HSCHICDRRFRALY-----------NKKECLHC-TEFKSVENLKNHMRDQH 138 (669)
T ss_pred hhcCccccchhhhc-----------ccCCCccc-cchhHHHHHHHHHHHhh
Confidence 45777776653211 11256667 66667777777775433
No 38
>KOG2231|consensus
Probab=96.61 E-value=0.0046 Score=62.63 Aligned_cols=47 Identities=30% Similarity=0.770 Sum_probs=31.6
Q ss_pred CcccccccccCCHHHHHHHHHHhcCCCCccCccCcccCCHhHHHHHHHHhcCCCCCCCcC
Q psy8466 199 NKCDLCSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSTKSYLTEHMKLHQGIKNKCDLC 258 (431)
Q Consensus 199 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C 258 (431)
+.|.+|+..|.-.. ..-.|..| -.|.+...|+.|+..-|.. ..|..|
T Consensus 100 ~~C~~C~~~~~~~~-----------~~~~~~~c-~~~~s~~~Lk~H~~~~H~~-~~c~lC 146 (669)
T KOG2231|consen 100 HSCHICDRRFRALY-----------NKKECLHC-TEFKSVENLKNHMRDQHKL-HLCSLC 146 (669)
T ss_pred hhcCccccchhhhc-----------ccCCCccc-cchhHHHHHHHHHHHhhhh-hccccc
Confidence 68999988875321 12468889 8888999999999654432 234444
No 39
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.60 E-value=0.00051 Score=61.83 Aligned_cols=50 Identities=32% Similarity=0.630 Sum_probs=35.8
Q ss_pred CCcccccc--cccccCCHHHHHHHHH-HhC-------------------CCCCcccccccccCChHHHHHHH
Q psy8466 358 GIRYKCDL--CSKEFSWKGHLTEHRK-LHQ-------------------DIKNKCDLCSKEFSSKRILTEHM 407 (431)
Q Consensus 358 ~~~~~C~~--C~~~f~~~~~L~~H~~-~H~-------------------~~~~~C~~C~~~F~~~~~L~~H~ 407 (431)
++||+|++ |.|.|.....|+-|+. -|. +++|+|.+|+|+++...-|+.|+
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 46788876 8888888888888865 341 23477777777777777777664
No 40
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.43 E-value=0.0014 Score=35.86 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=11.5
Q ss_pred CcccccccccCChHHHHHHHHhcC
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQ 411 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~ 411 (431)
|+|+.|+.... ...|..|+++|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 34555555555 555555555544
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.29 E-value=0.0034 Score=40.42 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=9.8
Q ss_pred cccccccccccCCHHHHHHHHHHhC
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLHQ 384 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H~ 384 (431)
|-.|++|+..+.+..+|.+|+.+++
T Consensus 24 PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 24 PATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp -EE-TTT--EESSHHHHHHHHHHHT
T ss_pred CCCCCcchhhccchhhHHHHHHHHh
Confidence 3444444444444444444444333
No 42
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.20 E-value=0.0013 Score=59.29 Aligned_cols=50 Identities=30% Similarity=0.653 Sum_probs=41.1
Q ss_pred CCCcccc--chhccCCchHHHHHHhhhC--------------------CCcccccccccccCCHHHHHHHHH
Q psy8466 332 IKNKCDL--CSKEFSHKSNLTKHMNLHQ--------------------GIRYKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 332 ~~~~C~~--C~k~f~~~~~L~~H~~~h~--------------------~~~~~C~~C~~~f~~~~~L~~H~~ 381 (431)
..|+|++ |.|.|.....|+.|+..-+ .+||+|++|+|.|.....|+-|+.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 3478887 9999999999999986422 247999999999999999999965
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.04 E-value=0.0026 Score=35.17 Aligned_cols=21 Identities=43% Similarity=0.931 Sum_probs=11.6
Q ss_pred cccccccccCChHHHHHHHHh
Q psy8466 389 KCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~ 409 (431)
.|.+|++.|.+...|..|++.
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHCc
Confidence 455555555555555555543
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.03 E-value=0.0038 Score=34.50 Aligned_cols=22 Identities=36% Similarity=0.833 Sum_probs=15.8
Q ss_pred ccccccccccCCHHHHHHHHHH
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKL 382 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~ 382 (431)
|.|.+|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 5677777777777777777664
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.03 E-value=0.0031 Score=40.58 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=23.1
Q ss_pred HHHHHHhC--CCCCcccccccccCChHHHHHHHHhcCC-CC
Q psy8466 377 TEHRKLHQ--DIKNKCDLCSKEFSSKRILTEHMKLHQG-IT 414 (431)
Q Consensus 377 ~~H~~~H~--~~~~~C~~C~~~F~~~~~L~~H~~~H~g-~~ 414 (431)
..+.+.|. ..+..|++|+..+.+..+|++|+.++|+ +|
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 44554443 2236899999999999999999988887 54
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.92 E-value=0.0047 Score=33.75 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=13.0
Q ss_pred ccccccccccCCHHHHHHHHHHhC
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQ 384 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~ 384 (431)
|+|+.|+.... ...|..|+++|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 45666666665 666666666543
No 47
>KOG2482|consensus
Probab=95.90 E-value=0.019 Score=52.54 Aligned_cols=145 Identities=25% Similarity=0.365 Sum_probs=89.7
Q ss_pred hHHHHHHhHhcCCCC--CCCCCCccc-CCHHHHHHHHHH-hC---C-------------------CCCCCCchhhccCCh
Q psy8466 266 SYLTEHMKLHQGIKN--KCDLCSKEF-STKSYLTEHMKL-HQ---G-------------------LKNKCDLCSKEFSRK 319 (431)
Q Consensus 266 ~~l~~H~~~h~~~~~--~C~~C~~~f-~~~~~L~~H~~~-h~---~-------------------~~~~C~~C~~~f~~~ 319 (431)
..|..|++.-.+..| +|-.|...+ .+++.+..|+-. |. | .+..|-.|.+.|+.+
T Consensus 129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdk 208 (423)
T KOG2482|consen 129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDK 208 (423)
T ss_pred HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCc
Confidence 345555554433333 899998655 567788888764 42 1 123699999999999
Q ss_pred hHHHHHHHH--hcCCCCccccchhccC--------CchHHHHHH--hhh---------------CC-Cc--ccccccccc
Q psy8466 320 SYLTEHMKL--HQGIKNKCDLCSKEFS--------HKSNLTKHM--NLH---------------QG-IR--YKCDLCSKE 369 (431)
Q Consensus 320 ~~l~~H~~~--h~~~~~~C~~C~k~f~--------~~~~L~~H~--~~h---------------~~-~~--~~C~~C~~~ 369 (431)
..|+.||+. |-...++=..-++-|. +......|. .+- .+ .+ .+|-.|...
T Consensus 209 ntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~ 288 (423)
T KOG2482|consen 209 NTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNF 288 (423)
T ss_pred HHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccc
Confidence 999999874 3322232222222110 111111111 110 01 12 589999999
Q ss_pred cCCHHHHHHHHHHhCC----------------------------CCCcccccccccCChHHHHHHHHhc
Q psy8466 370 FSWKGHLTEHRKLHQD----------------------------IKNKCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 370 f~~~~~L~~H~~~H~~----------------------------~~~~C~~C~~~F~~~~~L~~H~~~H 410 (431)
..+...|..||++-+. .+-.|..|.-.|.....|..||..+
T Consensus 289 ~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 289 YENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 9999999999984321 0125999999999999999999764
No 48
>PRK04860 hypothetical protein; Provisional
Probab=95.80 E-value=0.0045 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.604 Sum_probs=12.4
Q ss_pred hHHHHHHHHhcCC-CCCccCccccccC
Q psy8466 400 KRILTEHMKLHQG-ITYKCGLCSKEFS 425 (431)
Q Consensus 400 ~~~L~~H~~~H~g-~~~~C~~C~~~f~ 425 (431)
...++.|.++|+| ++|.|..|+..|.
T Consensus 128 ~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 128 QLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred eCHHHHHHHHhcCCccEECCCCCceeE
Confidence 3344445555544 4455555554444
No 49
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.76 E-value=0.0091 Score=54.63 Aligned_cols=126 Identities=25% Similarity=0.487 Sum_probs=82.2
Q ss_pred cccccc--cccccCChHHHHHHHHHhcCCCCcccccc---cccC------CHHHHHHHHHHhcCC---C--CccCccCcc
Q psy8466 171 RYKCDL--CSKKFSTKSYLTAHMKLHQGLKNKCDLCS---KEFS------SKSYLTEHMKLHQGI---K--NKCDLCSKE 234 (431)
Q Consensus 171 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~C~~C~---~~f~------~~~~L~~H~~~h~~~---~--~~C~~C~~~ 234 (431)
.|.|+. |..+......|..|.+..|+ .+-|.+|- +.|. ++..|..|...-... + +.|..|...
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC-cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 477864 77777778889999987765 35566663 3333 345566665432211 1 478999988
Q ss_pred cCCHhHHHHHHHHhcCCCCCCCcCCcc-------cCChhHHHHHHhHhcCCCCCCCC--CC----cccCCHHHHHHHHHH
Q psy8466 235 FSTKSYLTEHMKLHQGIKNKCDLCSKE-------FSTKSYLTEHMKLHQGIKNKCDL--CS----KEFSTKSYLTEHMKL 301 (431)
Q Consensus 235 f~~~~~L~~H~~~h~~~~~~C~~C~~~-------f~~~~~l~~H~~~h~~~~~~C~~--C~----~~f~~~~~L~~H~~~ 301 (431)
|-+...|..|+|..|. .|-+|++. |.+-..|..|.+.-+ |.|.. |- ..|.....|..|+..
T Consensus 230 FYdDDEL~~HcR~~HE---~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~~el~~h~~~ 303 (493)
T COG5236 230 FYDDDELRRHCRLRHE---ACHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYHTELLEHLTR 303 (493)
T ss_pred ecChHHHHHHHHhhhh---hhhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence 9999999999887664 45555543 666777877775432 44432 21 468888888888865
Q ss_pred hC
Q psy8466 302 HQ 303 (431)
Q Consensus 302 h~ 303 (431)
-+
T Consensus 304 ~h 305 (493)
T COG5236 304 FH 305 (493)
T ss_pred Hh
Confidence 44
No 50
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.12 E-value=0.023 Score=52.03 Aligned_cols=73 Identities=23% Similarity=0.473 Sum_probs=49.5
Q ss_pred CccccchhccCCchHHHHHHhhhCCCcccccccc-------cccCCHHHHHHHHHHhCCCCCcccc--cc----cccCCh
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCS-------KEFSWKGHLTEHRKLHQDIKNKCDL--CS----KEFSSK 400 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~-------~~f~~~~~L~~H~~~H~~~~~~C~~--C~----~~F~~~ 400 (431)
+.|..|...|..-..|.+|+|.-+.. |-+|+ .-|..-.+|..|.+.-+ |.|.+ |- ..|...
T Consensus 221 P~C~FC~~~FYdDDEL~~HcR~~HE~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~ 294 (493)
T COG5236 221 PLCIFCKIYFYDDDELRRHCRLRHEA---CHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYH 294 (493)
T ss_pred chhhhccceecChHHHHHHHHhhhhh---hhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccH
Confidence 47888888888888888888765543 44444 34777788888866322 44443 22 578888
Q ss_pred HHHHHHHHhcCC
Q psy8466 401 RILTEHMKLHQG 412 (431)
Q Consensus 401 ~~L~~H~~~H~g 412 (431)
..|..|+..-||
T Consensus 295 ~el~~h~~~~h~ 306 (493)
T COG5236 295 TELLEHLTRFHK 306 (493)
T ss_pred HHHHHHHHHHhh
Confidence 889999877655
No 51
>PRK04860 hypothetical protein; Provisional
Probab=95.10 E-value=0.01 Score=49.67 Aligned_cols=35 Identities=17% Similarity=0.611 Sum_probs=20.0
Q ss_pred cccccccccccCCHHHHHHHHHHhCCCC-CcccccccccC
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLHQDIK-NKCDLCSKEFS 398 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~-~~C~~C~~~F~ 398 (431)
+|.|. |+. ....+.+|.++|++.+ |.|..|+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence 45665 555 4555566666665554 66666665554
No 52
>KOG2482|consensus
Probab=95.04 E-value=0.083 Score=48.53 Aligned_cols=193 Identities=23% Similarity=0.342 Sum_probs=95.5
Q ss_pred HHHhhhhhcCCc--ccccccccccc-CChHHHHHHHHHhcCCCCcccccccccCCHHHHHHHHHHhcCCCCccCccCccc
Q psy8466 159 CQEKHMKLHQGV--RYKCDLCSKKF-STKSYLTAHMKLHQGLKNKCDLCSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEF 235 (431)
Q Consensus 159 ~~~~h~~~~~~~--~~~C~~C~~~f-~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f 235 (431)
.|+.+++...+. ..+|-.|...+ .+++.+..|+..-|+...-= .........|..|++..- ..+.|-.|.+.|
T Consensus 130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGl---pDniVyvnelLehLkekL-~r~~CLyCekif 205 (423)
T KOG2482|consen 130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGL---PDNIVYVNELLEHLKEKL-ERLRCLYCEKIF 205 (423)
T ss_pred HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCC---CcceeeHHHHHHHHHHHH-hhheeeeecccc
Confidence 344555544444 56788887665 45566666765444321000 000112234455544321 135677888888
Q ss_pred CCHhHHHHHHHHh--cCCCCCCCcCCcccC------ChhHHHHHHhH--h----c-------------CCC---CCCCCC
Q psy8466 236 STKSYLTEHMKLH--QGIKNKCDLCSKEFS------TKSYLTEHMKL--H----Q-------------GIK---NKCDLC 285 (431)
Q Consensus 236 ~~~~~L~~H~~~h--~~~~~~C~~C~~~f~------~~~~l~~H~~~--h----~-------------~~~---~~C~~C 285 (431)
+.+..|+.||+.. ....|+=..-.+-|. .++....|... . . +.. -.|-.|
T Consensus 206 rdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC 285 (423)
T KOG2482|consen 206 RDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFC 285 (423)
T ss_pred CCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEee
Confidence 8888888887643 222222221111110 01111111100 0 0 111 278899
Q ss_pred CcccCCHHHHHHHHHHhCCCCC-C-CCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHHhhh
Q psy8466 286 SKEFSTKSYLTEHMKLHQGLKN-K-CDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHMNLH 356 (431)
Q Consensus 286 ~~~f~~~~~L~~H~~~h~~~~~-~-C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h 356 (431)
.....+...|..||++-+.-.. + =..=+..|-..-.+..-+|.. ..+-.|-.|.-.|.....|..||..+
T Consensus 286 ~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq-~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 286 TNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQ-KKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred ccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHH-hhccccccccccccCcchhhhhcccc
Confidence 9999999999999986543211 0 001112222222222222211 11236888888999999999998753
No 53
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.97 E-value=0.0056 Score=34.57 Aligned_cols=22 Identities=50% Similarity=0.765 Sum_probs=13.5
Q ss_pred CcccccccccCChHHHHHHHHh
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4566666666666666666543
No 54
>KOG1146|consensus
Probab=94.74 E-value=0.0075 Score=64.75 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCCCCcccCCHHHHHHHHHH-hCCCC-CCCCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHH-HHhhhCC
Q psy8466 282 CDLCSKEFSTKSYLTEHMKL-HQGLK-NKCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTK-HMNLHQG 358 (431)
Q Consensus 282 C~~C~~~f~~~~~L~~H~~~-h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~-H~~~h~~ 358 (431)
|..|+..+.....+..|+.. |...+ ++|+.|+..|+....|-.|+|..+.+.-. .+|-.. .....+.+ -.....+
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~-~~c~~g-q~~~~~arg~~~~~~~ 516 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS-AYCKAG-QNHPRLARGEVYRCPG 516 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch-hHhHhc-cccccccccccccCCC
Confidence 34444445555555555443 22222 36666666666666666666653322111 111110 00000000 0011223
Q ss_pred CcccccccccccCCHHHHHHHHHH--hC----------C-------------------------------C-CCcccccc
Q psy8466 359 IRYKCDLCSKEFSWKGHLTEHRKL--HQ----------D-------------------------------I-KNKCDLCS 394 (431)
Q Consensus 359 ~~~~C~~C~~~f~~~~~L~~H~~~--H~----------~-------------------------------~-~~~C~~C~ 394 (431)
++|.|..|..+++.+..|..|+.. |- | + .+.|.+|+
T Consensus 517 ~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~ 596 (1406)
T KOG1146|consen 517 KPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCS 596 (1406)
T ss_pred CcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhc
Confidence 468888888888888888888763 31 0 1 16799999
Q ss_pred cccCChHHHHHHHHh-cCC-CCCccCccccccCCCCC
Q psy8466 395 KEFSSKRILTEHMKL-HQG-ITYKCGLCSKEFSCKSN 429 (431)
Q Consensus 395 ~~F~~~~~L~~H~~~-H~g-~~~~C~~C~~~f~~~~~ 429 (431)
+.-.-..+|+.||.. ++. .|.-|-.|+-.+.....
T Consensus 597 yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~ 633 (1406)
T KOG1146|consen 597 YETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASL 633 (1406)
T ss_pred chhhhhhccccccccCCCCCChHHHhhhcchhhcccc
Confidence 999999999999965 444 34666666666554443
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.33 E-value=0.011 Score=33.30 Aligned_cols=21 Identities=43% Similarity=0.833 Sum_probs=13.9
Q ss_pred ccccccccccCCHHHHHHHHH
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~ 381 (431)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 556666666666666666654
No 56
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.93 E-value=0.05 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.808 Sum_probs=12.5
Q ss_pred cccccccccCChHHHHHHHHh
Q psy8466 389 KCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~ 409 (431)
.|+.||+.| ....|..|+.+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHHh
Confidence 566666666 55666666653
No 57
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.03 E-value=0.085 Score=29.08 Aligned_cols=19 Identities=32% Similarity=0.824 Sum_probs=10.2
Q ss_pred cccccccccCCHHHHHHHHH
Q psy8466 362 KCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 362 ~C~~C~~~f~~~~~L~~H~~ 381 (431)
.|+.||+.| ....|..|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455555555 4455555544
No 58
>KOG1146|consensus
Probab=92.30 E-value=0.085 Score=57.10 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=32.0
Q ss_pred cccccccccChhHHHhhhhhcCC--ccccccccccccCChHHHHHHHHH
Q psy8466 147 KSDHERRSINYKCQEKHMKLHQG--VRYKCDLCSKKFSTKSYLTAHMKL 193 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~h~~~~~~--~~~~C~~C~~~f~~~~~L~~H~~~ 193 (431)
+..++..+.....+..|+..... +-|.|+.|++.|+....|..|||.
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRs 487 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRS 487 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccc
Confidence 33444455444455555443222 368999999999999999999997
No 59
>KOG2785|consensus
Probab=91.84 E-value=1.2 Score=42.04 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=42.3
Q ss_pred cccccccccccCChHHHHHHHHHh-cCC--C----CcccccccccCCHHHHHHHHH----HhcCCCCccCccCcccCCHh
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLH-QGL--K----NKCDLCSKEFSSKSYLTEHMK----LHQGIKNKCDLCSKEFSTKS 239 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h-~~~--~----~~C~~C~~~f~~~~~L~~H~~----~h~~~~~~C~~C~~~f~~~~ 239 (431)
-|.|.-|...|.+...-+.|+++- |.. + -.=++=-..|..+..-..-.. .-.+..+.|.+|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 388999999999999899998742 110 0 011122222222211111100 11223357888888888877
Q ss_pred HHHHHHHH
Q psy8466 240 YLTEHMKL 247 (431)
Q Consensus 240 ~L~~H~~~ 247 (431)
....|+..
T Consensus 83 a~~~hl~S 90 (390)
T KOG2785|consen 83 AHENHLKS 90 (390)
T ss_pred hHHHHHHH
Confidence 77777754
No 60
>KOG2785|consensus
Probab=91.69 E-value=0.62 Score=43.87 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=36.2
Q ss_pred cccccccccccCCHHHHHHHHHHhCC------------------------CCCcccccc---cccCChHHHHHHHHh
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLHQD------------------------IKNKCDLCS---KEFSSKRILTEHMKL 409 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H~~------------------------~~~~C~~C~---~~F~~~~~L~~H~~~ 409 (431)
|-.|-.|++.|.+...-..||..++| .-+.|-+|+ +.|.+....+.||..
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 34566677777776666677666554 225688888 999999999999965
No 61
>KOG4173|consensus
Probab=91.28 E-value=0.14 Score=43.63 Aligned_cols=42 Identities=24% Similarity=0.527 Sum_probs=23.0
Q ss_pred hhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHHhh
Q psy8466 312 CSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHMNL 355 (431)
Q Consensus 312 C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~ 355 (431)
|...|.....+..|..+-++ ..|..|.+.|.+..-|..|+..
T Consensus 87 c~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E 128 (253)
T KOG4173|consen 87 CCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILE 128 (253)
T ss_pred hHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHH
Confidence 55555555555555433222 3566666666666666666543
No 62
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=90.23 E-value=0.037 Score=54.78 Aligned_cols=47 Identities=30% Similarity=0.495 Sum_probs=22.6
Q ss_pred cccccCCHHHHHHHHHHhCCCC---CcccccccccCChHHHHHHHHhcCC
Q psy8466 366 CSKEFSWKGHLTEHRKLHQDIK---NKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 366 C~~~f~~~~~L~~H~~~H~~~~---~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
|-..+.....+..|...|.... +.+..|.+.|.....|..|++.|.-
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 394 CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred hhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 4444444444444444443222 3445555555555555555555554
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=90.15 E-value=0.21 Score=29.89 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=14.7
Q ss_pred cccccccccccCCHHHHHHHHH
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~ 381 (431)
+|.|++|++.|.....+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4667777777776666666654
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=90.11 E-value=0.19 Score=30.05 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred CCcccccccccCChHHHHHHHHh
Q psy8466 387 KNKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 387 ~~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
+|.|.+|++.|.....+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 47899999999999999999864
No 65
>KOG2893|consensus
Probab=89.92 E-value=0.11 Score=45.21 Aligned_cols=43 Identities=30% Similarity=0.628 Sum_probs=23.5
Q ss_pred CCCCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHH
Q psy8466 307 NKCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKH 352 (431)
Q Consensus 307 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H 352 (431)
+.|.+|++.|....-|.+|++..+ |+|.+|.|...+-..|..|
T Consensus 11 pwcwycnrefddekiliqhqkakh---fkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 11 PWCWYCNREFDDEKILIQHQKAKH---FKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred ceeeecccccchhhhhhhhhhhcc---ceeeeehhhhccCCCceee
Confidence 456666666666655555554322 5566666555554445444
No 66
>KOG2893|consensus
Probab=89.79 E-value=0.093 Score=45.64 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=40.7
Q ss_pred CCccccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHH-HHHh
Q psy8466 333 KNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEH-RKLH 383 (431)
Q Consensus 333 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H-~~~H 383 (431)
++.|=+|++.|-....|..|++..+ |+|.+|.+...+--.|..| +++|
T Consensus 10 kpwcwycnrefddekiliqhqkakh---fkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAKH---FKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhcc---ceeeeehhhhccCCCceeehhhhh
Confidence 4679999999999999999988654 9999999998888888888 5566
No 67
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=87.60 E-value=0.27 Score=29.16 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=5.0
Q ss_pred CCCccCcccc
Q psy8466 413 ITYKCGLCSK 422 (431)
Q Consensus 413 ~~~~C~~C~~ 422 (431)
.|+.|+.||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3455555543
No 68
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=86.47 E-value=0.17 Score=50.06 Aligned_cols=60 Identities=35% Similarity=0.493 Sum_probs=43.0
Q ss_pred cccccccccccCCHHHHHHHHH--HhCCC--C-Cccc--ccccccCChHHHHHHHHhcCC-CCCccCc
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRK--LHQDI--K-NKCD--LCSKEFSSKRILTEHMKLHQG-ITYKCGL 419 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~--~H~~~--~-~~C~--~C~~~F~~~~~L~~H~~~H~g-~~~~C~~ 419 (431)
++.|..|...|.....|..|.+ .|.++ + +.|+ .|++.|.+...+..|..+|++ .++.+..
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL 356 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence 5677777777777777777777 67766 4 6777 677777777777777777777 3444443
No 69
>KOG2186|consensus
Probab=85.31 E-value=0.39 Score=42.45 Aligned_cols=44 Identities=20% Similarity=0.516 Sum_probs=19.4
Q ss_pred CCCchhhccCChhHHHHHHHHhcCCCCccccchhccCCchHHHHHH
Q psy8466 308 KCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCSKEFSHKSNLTKHM 353 (431)
Q Consensus 308 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~ 353 (431)
.|..||...... .+.+|+-..++..|.|-.|++.|.. .++..|.
T Consensus 5 tCnvCgEsvKKp-~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 5 TCNVCGESVKKP-QVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred ehhhhhhhcccc-chHHHHHhccCCeeEEeeccccccc-chhhhhh
Confidence 344454444322 2333444444444445555555544 3344443
No 70
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=84.65 E-value=1.6 Score=34.10 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.8
Q ss_pred Ccc----cccccccCChHHHHHHHHhcCC
Q psy8466 388 NKC----DLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 388 ~~C----~~C~~~F~~~~~L~~H~~~H~g 412 (431)
|.| ..|++.+.+...+..|++.+||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 579 9999999999999999999886
No 71
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.57 E-value=0.79 Score=35.60 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=5.8
Q ss_pred cccccccccccC
Q psy8466 360 RYKCDLCSKEFS 371 (431)
Q Consensus 360 ~~~C~~C~~~f~ 371 (431)
|..|+.||..|.
T Consensus 26 PivCP~CG~~~~ 37 (108)
T PF09538_consen 26 PIVCPKCGTEFP 37 (108)
T ss_pred CccCCCCCCccC
Confidence 444555554444
No 72
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=81.96 E-value=2.3 Score=33.16 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.8
Q ss_pred ccc----cccccccCCHHHHHHHHHHhCC
Q psy8466 361 YKC----DLCSKEFSWKGHLTEHRKLHQD 385 (431)
Q Consensus 361 ~~C----~~C~~~f~~~~~L~~H~~~H~~ 385 (431)
|.| ..|+..+.+...|..|.+.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 889 9999999999999999997764
No 73
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=80.40 E-value=1 Score=30.22 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=16.6
Q ss_pred CcccccccccCChHHHHHHHHhcCCCCCccCcccc
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQGITYKCGLCSK 422 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~g~~~~C~~C~~ 422 (431)
|.|+.||..-..+ -+.-+-.|.+|.|+.||.
T Consensus 28 F~CPnCGe~~I~R----c~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 28 FPCPNCGEVEIYR----CAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred eeCCCCCceeeeh----hhhHHHcCCceECCCcCc
Confidence 5566666443322 233344556777777764
No 74
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=79.85 E-value=0.8 Score=30.17 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.6
Q ss_pred cccccccccccCChHHHHHHHHHhcCC
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLHQGL 197 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h~~~ 197 (431)
-+.|+.|+..|....++.+|....|+.
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 588999999999999999999876653
No 75
>KOG4173|consensus
Probab=79.04 E-value=1.7 Score=37.23 Aligned_cols=77 Identities=21% Similarity=0.511 Sum_probs=53.5
Q ss_pred CCCCC--CCcccCCHHHHHHHHHHhCCCCCCCCchhhccCChhHHHHHHHHhcC----------CC-Ccccc--chhccC
Q psy8466 280 NKCDL--CSKEFSTKSYLTEHMKLHQGLKNKCDLCSKEFSRKSYLTEHMKLHQG----------IK-NKCDL--CSKEFS 344 (431)
Q Consensus 280 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----------~~-~~C~~--C~k~f~ 344 (431)
+.|++ |-..|.+......|..+-++ ..|..|.+.|.+...|..|+...+. .. |.|-+ |+..|.
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFk 157 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFK 157 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhh
Confidence 56776 67788877777777655333 3799999999999999999864432 11 56643 777777
Q ss_pred CchHHHHHHhhhCC
Q psy8466 345 HKSNLTKHMNLHQG 358 (431)
Q Consensus 345 ~~~~L~~H~~~h~~ 358 (431)
+...-..|+-.-+.
T Consensus 158 T~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 158 TSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhHHHHhcc
Confidence 77777777654443
No 76
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.09 E-value=3.6 Score=32.01 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=11.6
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHh
Q psy8466 279 KNKCDLCSKEFSTKSYLTEHMKLH 302 (431)
Q Consensus 279 ~~~C~~C~~~f~~~~~L~~H~~~h 302 (431)
+|+|+.|...|=..-++-.|...|
T Consensus 81 ~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 81 RYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ceeCCCCCCccccccchhhhhhcc
Confidence 355555555554444444444333
No 77
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=76.84 E-value=2.1 Score=33.23 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=3.8
Q ss_pred CCCcCCccc
Q psy8466 254 KCDLCSKEF 262 (431)
Q Consensus 254 ~C~~C~~~f 262 (431)
.|++||..|
T Consensus 28 vCP~CG~~~ 36 (108)
T PF09538_consen 28 VCPKCGTEF 36 (108)
T ss_pred cCCCCCCcc
Confidence 344444444
No 78
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=75.94 E-value=1.2 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=13.3
Q ss_pred CcccccccccCChHHHHHHHHhcCC
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
+.|+-||..|.....+.+|...-||
T Consensus 18 lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred eeCCchhHHHHHhHHHHHHhhHHhh
Confidence 3555555555555555555544443
No 79
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=74.17 E-value=1.4 Score=26.22 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=4.5
Q ss_pred CCccCcccc
Q psy8466 414 TYKCGLCSK 422 (431)
Q Consensus 414 ~~~C~~C~~ 422 (431)
|..|++||.
T Consensus 18 p~~CP~Cg~ 26 (34)
T cd00729 18 PEKCPICGA 26 (34)
T ss_pred CCcCcCCCC
Confidence 345555543
No 80
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=71.99 E-value=1.3 Score=27.12 Aligned_cols=6 Identities=33% Similarity=1.082 Sum_probs=2.2
Q ss_pred cccchh
Q psy8466 336 CDLCSK 341 (431)
Q Consensus 336 C~~C~k 341 (431)
|+.|+.
T Consensus 5 CP~C~~ 10 (38)
T TIGR02098 5 CPNCKT 10 (38)
T ss_pred CCCCCC
Confidence 333333
No 81
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.89 E-value=2.8 Score=33.18 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=6.0
Q ss_pred cccccccccccC
Q psy8466 360 RYKCDLCSKEFS 371 (431)
Q Consensus 360 ~~~C~~C~~~f~ 371 (431)
|..|+.||..|.
T Consensus 26 p~vcP~cg~~~~ 37 (129)
T TIGR02300 26 PAVSPYTGEQFP 37 (129)
T ss_pred CccCCCcCCccC
Confidence 445555555543
No 82
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=69.38 E-value=1.5 Score=31.99 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=5.7
Q ss_pred CcccccccccC
Q psy8466 388 NKCDLCSKEFS 398 (431)
Q Consensus 388 ~~C~~C~~~F~ 398 (431)
+.|..||..|.
T Consensus 54 W~C~kCg~~fA 64 (89)
T COG1997 54 WKCRKCGAKFA 64 (89)
T ss_pred EEcCCCCCeec
Confidence 45555555554
No 83
>KOG2186|consensus
Probab=69.30 E-value=3 Score=37.13 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=33.3
Q ss_pred ccccccccccCChHHHHHHHHHhcCCCCcccccccccCCHHHHHHHHH
Q psy8466 172 YKCDLCSKKFSTKSYLTAHMKLHQGLKNKCDLCSKEFSSKSYLTEHMK 219 (431)
Q Consensus 172 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~ 219 (431)
|.|..||....-. .+..|+-..++..|.|-.|++.|.. .....|..
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence 6788888776644 4666888887766888888888876 55666643
No 84
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=68.22 E-value=2.3 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.2
Q ss_pred CcccccccccC
Q psy8466 388 NKCDLCSKEFS 398 (431)
Q Consensus 388 ~~C~~C~~~F~ 398 (431)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 44445554444
No 85
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=67.40 E-value=4.7 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.743 Sum_probs=14.6
Q ss_pred cccccccccCChHHHHHHHHh
Q psy8466 389 KCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~ 409 (431)
.|++|++.+ ....+..|+..
T Consensus 3 ~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 3 QCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHHH
Confidence 588888887 55777777753
No 86
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=67.36 E-value=3.7 Score=34.01 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=16.7
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKE 396 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~ 396 (431)
|.|+.|+..|.....+.. ......|.|+.||..
T Consensus 100 Y~Cp~C~~~y~~~ea~~~---~d~~~~f~Cp~Cg~~ 132 (147)
T smart00531 100 YKCPNCQSKYTFLEANQL---LDMDGTFTCPRCGEE 132 (147)
T ss_pred EECcCCCCEeeHHHHHHh---cCCCCcEECCCCCCE
Confidence 666666666664433332 011222666666654
No 87
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.86 E-value=3.8 Score=32.42 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=5.1
Q ss_pred ccccccccccC
Q psy8466 361 YKCDLCSKEFS 371 (431)
Q Consensus 361 ~~C~~C~~~f~ 371 (431)
..|+.||+.|.
T Consensus 10 r~Cp~cg~kFY 20 (129)
T TIGR02300 10 RICPNTGSKFY 20 (129)
T ss_pred ccCCCcCcccc
Confidence 34455554443
No 88
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=65.99 E-value=3.5 Score=33.25 Aligned_cols=21 Identities=38% Similarity=0.888 Sum_probs=14.8
Q ss_pred cccccccccCChHHHHHHHHhcCC
Q psy8466 389 KCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
.|-+||+.|.. |++|++.|+|
T Consensus 74 ~clecGk~~k~---LkrHL~~~~g 94 (132)
T PF05443_consen 74 ICLECGKKFKT---LKRHLRTHHG 94 (132)
T ss_dssp E-TBT--EESB---HHHHHHHTT-
T ss_pred EEccCCcccch---HHHHHHHccC
Confidence 69999999976 5999999988
No 89
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=65.47 E-value=3 Score=34.57 Aligned_cols=34 Identities=18% Similarity=0.510 Sum_probs=18.0
Q ss_pred CccccchhccCCchHHHHHHhhhCCCccccccccccc
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEF 370 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f 370 (431)
|.|+.|+..|.....+.. . .....|.|+.||...
T Consensus 100 Y~Cp~C~~~y~~~ea~~~-~--d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 100 YKCPNCQSKYTFLEANQL-L--DMDGTFTCPRCGEEL 133 (147)
T ss_pred EECcCCCCEeeHHHHHHh-c--CCCCcEECCCCCCEE
Confidence 577777777764433322 0 111237777777554
No 90
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=64.47 E-value=3.7 Score=34.48 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.0
Q ss_pred CccccchhccCCchHH
Q psy8466 334 NKCDLCSKEFSHKSNL 349 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L 349 (431)
|.|+.|+..|+.-.++
T Consensus 110 Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM 125 (158)
T ss_pred EECCCCCcEeeHHHHH
Confidence 3444444444444433
No 91
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=64.01 E-value=5.5 Score=22.10 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=3.4
Q ss_pred CCcCCccc
Q psy8466 255 CDLCSKEF 262 (431)
Q Consensus 255 C~~C~~~f 262 (431)
|+.||..|
T Consensus 17 Cp~CG~~F 24 (26)
T PF10571_consen 17 CPHCGYDF 24 (26)
T ss_pred CCCCCCCC
Confidence 44444443
No 92
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=63.25 E-value=7.5 Score=32.62 Aligned_cols=28 Identities=14% Similarity=0.494 Sum_probs=17.8
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKE 396 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~ 396 (431)
|.|+.|+..|+....+. .-|.|+.||..
T Consensus 110 Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 110 FICPNMCVRFTFNEAME--------LNFTCPRCGAM 137 (158)
T ss_pred EECCCCCcEeeHHHHHH--------cCCcCCCCCCE
Confidence 66777777776666664 13667777654
No 93
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.45 E-value=6.7 Score=30.55 Aligned_cols=74 Identities=22% Similarity=0.415 Sum_probs=38.8
Q ss_pred CCCchhhccCChhHHHHHHHHhcCC---------------CCccccchhccCCchHHHHHHhhhCCCcccccccccccCC
Q psy8466 308 KCDLCSKEFSRKSYLTEHMKLHQGI---------------KNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSW 372 (431)
Q Consensus 308 ~C~~C~~~f~~~~~l~~H~~~h~~~---------------~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~ 372 (431)
.|+.||........|.+-. |+-- ...|-.|...|........-. .-...+|+|+.|...|--
T Consensus 17 ~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~-~~~~~~y~C~~C~~~FC~ 93 (112)
T TIGR00622 17 ECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDE-LKDSHRYVCAVCKNVFCV 93 (112)
T ss_pred cCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcccccccc-cccccceeCCCCCCcccc
Confidence 7888888877777666532 2210 013666666665432111000 111125666666666666
Q ss_pred HHHHHHHHHHhC
Q psy8466 373 KGHLTEHRKLHQ 384 (431)
Q Consensus 373 ~~~L~~H~~~H~ 384 (431)
.-++..|...|.
T Consensus 94 dCD~fiHe~Lh~ 105 (112)
T TIGR00622 94 DCDVFVHESLHC 105 (112)
T ss_pred ccchhhhhhccC
Confidence 666666655553
No 94
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=62.41 E-value=2.9 Score=25.28 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=3.1
Q ss_pred cccchhcc
Q psy8466 336 CDLCSKEF 343 (431)
Q Consensus 336 C~~C~k~f 343 (431)
|+.|+..|
T Consensus 5 Cp~C~~~y 12 (36)
T PF13717_consen 5 CPNCQAKY 12 (36)
T ss_pred CCCCCCEE
Confidence 33344333
No 95
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=62.24 E-value=3.2 Score=25.28 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=4.3
Q ss_pred cccccccccc
Q psy8466 361 YKCDLCSKEF 370 (431)
Q Consensus 361 ~~C~~C~~~f 370 (431)
.+|+.|+..|
T Consensus 26 vrC~~C~~~f 35 (37)
T PF13719_consen 26 VRCPKCGHVF 35 (37)
T ss_pred EECCCCCcEe
Confidence 4444444433
No 96
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=61.89 E-value=6.1 Score=24.98 Aligned_cols=21 Identities=33% Similarity=0.649 Sum_probs=10.2
Q ss_pred CcccccccccCCh----HHHHHHHH
Q psy8466 388 NKCDLCSKEFSSK----RILTEHMK 408 (431)
Q Consensus 388 ~~C~~C~~~F~~~----~~L~~H~~ 408 (431)
..|.+|++.+... +.|..|++
T Consensus 17 a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 17 AKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp EEETTTTEE-----SSTHHHHHHHH
T ss_pred EEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 3566666655543 56666663
No 97
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=61.60 E-value=1.6 Score=27.03 Aligned_cols=7 Identities=29% Similarity=1.208 Sum_probs=2.6
Q ss_pred ccccccc
Q psy8466 362 KCDLCSK 368 (431)
Q Consensus 362 ~C~~C~~ 368 (431)
+|..||.
T Consensus 7 ~C~~Cg~ 13 (41)
T smart00834 7 RCEDCGH 13 (41)
T ss_pred EcCCCCC
Confidence 3333333
No 98
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=61.22 E-value=5.9 Score=25.87 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=11.5
Q ss_pred cccccccccCCh-----HHHHHHHH
Q psy8466 389 KCDLCSKEFSSK-----RILTEHMK 408 (431)
Q Consensus 389 ~C~~C~~~F~~~-----~~L~~H~~ 408 (431)
.|..|++.+... +.|.+|++
T Consensus 20 ~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 20 KCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EecCCCCEeeeCCCCCcHHHHHHHH
Confidence 466666655443 46666665
No 99
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.79 E-value=1.5 Score=38.95 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=7.6
Q ss_pred cccccccccCCh
Q psy8466 389 KCDLCSKEFSSK 400 (431)
Q Consensus 389 ~C~~C~~~F~~~ 400 (431)
.|+.||.+|...
T Consensus 50 vCP~CgyA~~~~ 61 (214)
T PF09986_consen 50 VCPHCGYAAFEE 61 (214)
T ss_pred ECCCCCCccccc
Confidence 477777766543
No 100
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=60.25 E-value=5.5 Score=26.92 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=5.9
Q ss_pred CCccccchhc
Q psy8466 333 KNKCDLCSKE 342 (431)
Q Consensus 333 ~~~C~~C~k~ 342 (431)
+|.|+.||..
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 3566666654
No 101
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.20 E-value=4.6 Score=34.62 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.0
Q ss_pred CccccchhccCCchH
Q psy8466 334 NKCDLCSKEFSHKSN 348 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~ 348 (431)
|.|+.|+..|+.-.+
T Consensus 118 Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 118 FFCPNCHIRFTFDEA 132 (178)
T ss_pred EECCCCCcEEeHHHH
Confidence 345555554444433
No 102
>PF15269 zf-C2H2_7: Zinc-finger
Probab=60.14 E-value=7.4 Score=24.42 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=16.2
Q ss_pred ccccccccccCCHHHHHHHHH
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~ 381 (431)
|+|-.|..+...++.|..||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 678788777777777777776
No 103
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.04 E-value=1.6 Score=38.72 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=24.2
Q ss_pred CccccchhccCCchHHHHHHhh---hC-------CC-c-----ccccccccccCCH
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNL---HQ-------GI-R-----YKCDLCSKEFSWK 373 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~---h~-------~~-~-----~~C~~C~~~f~~~ 373 (431)
..||+|++.|.++.-+....+. .. +. | ..|+.||.+|...
T Consensus 6 ~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 6 ITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 5677777777766544444432 11 11 3 4699999888754
No 104
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=58.67 E-value=6.4 Score=31.80 Aligned_cols=22 Identities=36% Similarity=0.862 Sum_probs=15.2
Q ss_pred ccccchhccCCchHHHHHHhhhCCC
Q psy8466 335 KCDLCSKEFSHKSNLTKHMNLHQGI 359 (431)
Q Consensus 335 ~C~~C~k~f~~~~~L~~H~~~h~~~ 359 (431)
.|-+||+.|.. |++|++.|+|.
T Consensus 74 ~clecGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 74 ICLECGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp E-TBT--EESB---HHHHHHHTT-S
T ss_pred EEccCCcccch---HHHHHHHccCC
Confidence 79999999876 68999999874
No 105
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=58.33 E-value=2.2 Score=28.18 Aligned_cols=11 Identities=36% Similarity=1.238 Sum_probs=5.3
Q ss_pred ccccccccccC
Q psy8466 361 YKCDLCSKEFS 371 (431)
Q Consensus 361 ~~C~~C~~~f~ 371 (431)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 44555554444
No 106
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=56.71 E-value=4.2 Score=26.43 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=5.6
Q ss_pred cccccccccc
Q psy8466 361 YKCDLCSKEF 370 (431)
Q Consensus 361 ~~C~~C~~~f 370 (431)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 5555555555
No 107
>PRK04023 DNA polymerase II large subunit; Validated
Probab=55.85 E-value=8.9 Score=41.28 Aligned_cols=8 Identities=63% Similarity=1.273 Sum_probs=4.6
Q ss_pred ccccchhc
Q psy8466 335 KCDLCSKE 342 (431)
Q Consensus 335 ~C~~C~k~ 342 (431)
.|+.||..
T Consensus 628 fCpsCG~~ 635 (1121)
T PRK04023 628 KCPSCGKE 635 (1121)
T ss_pred cCCCCCCc
Confidence 56666654
No 108
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=55.33 E-value=9.5 Score=32.70 Aligned_cols=29 Identities=17% Similarity=0.610 Sum_probs=19.3
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCccccccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEF 397 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F 397 (431)
|.|+.|+..|+....+. .-|.|+.||...
T Consensus 118 Y~Cp~C~~rytf~eA~~--------~~F~Cp~Cg~~L 146 (178)
T PRK06266 118 FFCPNCHIRFTFDEAME--------YGFRCPQCGEML 146 (178)
T ss_pred EECCCCCcEEeHHHHhh--------cCCcCCCCCCCC
Confidence 77777777777766653 247777777543
No 109
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=53.68 E-value=8.3 Score=22.62 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=4.6
Q ss_pred cccccccccC
Q psy8466 389 KCDLCSKEFS 398 (431)
Q Consensus 389 ~C~~C~~~F~ 398 (431)
.|..||..+.
T Consensus 2 ~C~~Cg~~~~ 11 (32)
T PF03604_consen 2 ICGECGAEVE 11 (32)
T ss_dssp BESSSSSSE-
T ss_pred CCCcCCCeeE
Confidence 4555555543
No 110
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=52.96 E-value=7.3 Score=32.79 Aligned_cols=8 Identities=25% Similarity=1.032 Sum_probs=4.4
Q ss_pred cccccccc
Q psy8466 361 YKCDLCSK 368 (431)
Q Consensus 361 ~~C~~C~~ 368 (431)
|.|++||.
T Consensus 135 ~vC~vCGy 142 (166)
T COG1592 135 WVCPVCGY 142 (166)
T ss_pred EEcCCCCC
Confidence 55555554
No 111
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=52.60 E-value=2.9 Score=34.78 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=7.7
Q ss_pred CCCCCCCcccCCH
Q psy8466 280 NKCDLCSKEFSTK 292 (431)
Q Consensus 280 ~~C~~C~~~f~~~ 292 (431)
++|+.||.+|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 4566666666544
No 112
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.11 E-value=11 Score=40.73 Aligned_cols=9 Identities=22% Similarity=1.043 Sum_probs=5.9
Q ss_pred Cccccchhc
Q psy8466 334 NKCDLCSKE 342 (431)
Q Consensus 334 ~~C~~C~k~ 342 (431)
+.|+.||..
T Consensus 639 frCP~CG~~ 647 (1121)
T PRK04023 639 RRCPFCGTH 647 (1121)
T ss_pred ccCCCCCCC
Confidence 567777765
No 113
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=51.10 E-value=7.4 Score=34.33 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=10.9
Q ss_pred CcccccccccCChHHHHHHHHhc
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H 410 (431)
|.|+.|+|.|.-....++|+...
T Consensus 78 ~~C~lc~KlFkg~eFV~KHI~nK 100 (214)
T PF04959_consen 78 WRCPLCGKLFKGPEFVRKHIFNK 100 (214)
T ss_dssp EEE-SSS-EESSHHHHHHHHHHH
T ss_pred ECCCCCCcccCChHHHHHHHhhc
Confidence 45555555555555555555443
No 114
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=50.68 E-value=6.3 Score=22.72 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.4
Q ss_pred cccccccc
Q psy8466 360 RYKCDLCS 367 (431)
Q Consensus 360 ~~~C~~C~ 367 (431)
-|.|+.|+
T Consensus 19 ~~vCp~C~ 26 (30)
T PF08274_consen 19 LLVCPECG 26 (30)
T ss_dssp SEEETTTT
T ss_pred EEeCCccc
Confidence 34444443
No 115
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=50.25 E-value=8.6 Score=32.36 Aligned_cols=22 Identities=18% Similarity=0.521 Sum_probs=12.6
Q ss_pred CccccchhccCCchHHHHHHhhhCCCcccccccc
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCS 367 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~ 367 (431)
|.|++||..+.. ..|-+||+||
T Consensus 135 ~vC~vCGy~~~g------------e~P~~CPiCg 156 (166)
T COG1592 135 WVCPVCGYTHEG------------EAPEVCPICG 156 (166)
T ss_pred EEcCCCCCcccC------------CCCCcCCCCC
Confidence 567777654332 1256677776
No 116
>PF14353 CpXC: CpXC protein
Probab=49.20 E-value=11 Score=30.26 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=6.8
Q ss_pred CcccccccccCCh
Q psy8466 388 NKCDLCSKEFSSK 400 (431)
Q Consensus 388 ~~C~~C~~~F~~~ 400 (431)
|.|+.||..|.-.
T Consensus 39 ~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 39 FTCPSCGHKFRLE 51 (128)
T ss_pred EECCCCCCceecC
Confidence 4555555555443
No 117
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=48.77 E-value=2.9 Score=26.26 Aligned_cols=10 Identities=50% Similarity=1.497 Sum_probs=4.1
Q ss_pred cccccccccc
Q psy8466 361 YKCDLCSKEF 370 (431)
Q Consensus 361 ~~C~~C~~~f 370 (431)
|+|..||..|
T Consensus 6 y~C~~Cg~~f 15 (42)
T PF09723_consen 6 YRCEECGHEF 15 (42)
T ss_pred EEeCCCCCEE
Confidence 3444444433
No 118
>PF15269 zf-C2H2_7: Zinc-finger
Probab=48.70 E-value=15 Score=23.07 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred CcccccccccCChHHHHHHHHh
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
|+|-.|......++.|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 7899999999999999999864
No 119
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=47.31 E-value=12 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.4
Q ss_pred cccccccccCChHHHHHHHHhcCC
Q psy8466 389 KCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
.|-.+|+.|+ .|++|+.+|+|
T Consensus 78 icLEDGkkfK---SLKRHL~t~~g 98 (148)
T COG4957 78 ICLEDGKKFK---SLKRHLTTHYG 98 (148)
T ss_pred EEeccCcchH---HHHHHHhcccC
Confidence 6999999996 58999999998
No 120
>KOG4167|consensus
Probab=44.13 E-value=5.7 Score=40.87 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.0
Q ss_pred CcccccccccCChHHHHHHHHhcC
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKLHQ 411 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~H~ 411 (431)
|.|..|+|.|-.-..+..||++|.
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHH
Confidence 689999999999999999999985
No 121
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=42.88 E-value=15 Score=32.99 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=12.8
Q ss_pred CCcccccccccCChHHHHHHHHhc
Q psy8466 387 KNKCDLCSKEFSSKRILTEHMKLH 410 (431)
Q Consensus 387 ~~~C~~C~~~F~~~~~L~~H~~~H 410 (431)
.++|+.||........|..-.|+|
T Consensus 209 ~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 209 PIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred CCCCCCCCCcccccccceeeeecc
Confidence 356666666555555554444443
No 122
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=40.30 E-value=6 Score=28.19 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=3.0
Q ss_pred ccccccC
Q psy8466 392 LCSKEFS 398 (431)
Q Consensus 392 ~C~~~F~ 398 (431)
.||.+|.
T Consensus 34 eCg~tF~ 40 (72)
T PRK09678 34 NCSATFI 40 (72)
T ss_pred CCCCEEE
Confidence 4444443
No 123
>KOG4167|consensus
Probab=39.89 E-value=7.7 Score=39.95 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.7
Q ss_pred cccccccccccCChHHHHHHHHHhcC
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLHQG 196 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h~~ 196 (431)
-|.|..|++.|....++..||+.|.-
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 48999999999999999999999853
No 124
>KOG2593|consensus
Probab=38.32 E-value=27 Score=33.93 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=16.8
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCS 394 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~ 394 (431)
|.|+.|.+.|+....+..= .-..-.|.|..|+
T Consensus 129 Y~Cp~C~kkyt~Lea~~L~--~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQLL--DNETGEFHCENCG 160 (436)
T ss_pred ccCCccccchhhhHHHHhh--cccCceEEEecCC
Confidence 6777777766665554421 1111226666665
No 125
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=37.57 E-value=15 Score=19.96 Aligned_cols=9 Identities=22% Similarity=0.980 Sum_probs=5.2
Q ss_pred CCCccCccc
Q psy8466 413 ITYKCGLCS 421 (431)
Q Consensus 413 ~~~~C~~C~ 421 (431)
.+|.|+.||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 356666665
No 126
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.20 E-value=6.8 Score=25.77 Aligned_cols=24 Identities=33% Similarity=0.754 Sum_probs=10.6
Q ss_pred cccccccccccCCHHHHHHHHHHh
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRKLH 383 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~~H 383 (431)
+|+|+.|+..|--.-++-.|...|
T Consensus 21 ~y~C~~C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 21 RYRCPKCKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp EE--TTTT--B-HHHHHTTTTTS-
T ss_pred eEECCCCCCccccCcChhhhcccc
Confidence 466666666666555555554444
No 127
>PHA00626 hypothetical protein
Probab=36.74 E-value=15 Score=24.52 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=10.1
Q ss_pred CCCccCccccccCC
Q psy8466 413 ITYKCGLCSKEFSC 426 (431)
Q Consensus 413 ~~~~C~~C~~~f~~ 426 (431)
..|.|+.||..|+.
T Consensus 22 nrYkCkdCGY~ft~ 35 (59)
T PHA00626 22 DDYVCCDCGYNDSK 35 (59)
T ss_pred cceEcCCCCCeech
Confidence 35788888877764
No 128
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.93 E-value=8.2 Score=39.92 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=7.0
Q ss_pred CCCCCCcccCCHH
Q psy8466 281 KCDLCSKEFSTKS 293 (431)
Q Consensus 281 ~C~~C~~~f~~~~ 293 (431)
.|..||-+|+-..
T Consensus 125 ~CT~CGPRfTIi~ 137 (750)
T COG0068 125 NCTNCGPRFTIIE 137 (750)
T ss_pred ccCCCCcceeeec
Confidence 4666665555433
No 129
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=35.90 E-value=16 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=18.7
Q ss_pred ccccchhccCCchHHHHHHhhhCCC
Q psy8466 335 KCDLCSKEFSHKSNLTKHMNLHQGI 359 (431)
Q Consensus 335 ~C~~C~k~f~~~~~L~~H~~~h~~~ 359 (431)
.|-.+|+.|. +|++|+.+|.|.
T Consensus 78 icLEDGkkfK---SLKRHL~t~~gm 99 (148)
T COG4957 78 ICLEDGKKFK---SLKRHLTTHYGL 99 (148)
T ss_pred EEeccCcchH---HHHHHHhcccCC
Confidence 6999999986 499999999874
No 130
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=35.31 E-value=14 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=7.0
Q ss_pred HHHHHHh-hhCCCcccccc
Q psy8466 348 NLTKHMN-LHQGIRYKCDL 365 (431)
Q Consensus 348 ~L~~H~~-~h~~~~~~C~~ 365 (431)
.|..|+. .-...+..|+.
T Consensus 25 ~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 25 ELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp CHHHHHHTTSTTSEEE-SS
T ss_pred HHHHHHHccCCCCcEECCC
Confidence 4555544 22223344444
No 131
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=34.86 E-value=27 Score=27.97 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=7.6
Q ss_pred CCCCcCCcccCCh
Q psy8466 253 NKCDLCSKEFSTK 265 (431)
Q Consensus 253 ~~C~~C~~~f~~~ 265 (431)
++||.|.-+|.+.
T Consensus 122 pvCPvCkTSFKss 134 (140)
T PF05290_consen 122 PVCPVCKTSFKSS 134 (140)
T ss_pred CCCCccccccccc
Confidence 4666666666544
No 132
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=34.36 E-value=39 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.6
Q ss_pred cccccccccccC--ChHHHHHHHHHhc
Q psy8466 171 RYKCDLCSKKFS--TKSYLTAHMKLHQ 195 (431)
Q Consensus 171 ~~~C~~C~~~f~--~~~~L~~H~~~h~ 195 (431)
.-.|+.||..|. ....-..|.+.|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 357999998885 5577778877764
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=34.09 E-value=16 Score=25.55 Aligned_cols=9 Identities=44% Similarity=1.309 Sum_probs=2.5
Q ss_pred ccccccccc
Q psy8466 362 KCDLCSKEF 370 (431)
Q Consensus 362 ~C~~C~~~f 370 (431)
.|..|++.|
T Consensus 11 ~C~~C~~~F 19 (69)
T PF01363_consen 11 NCMICGKKF 19 (69)
T ss_dssp B-TTT--B-
T ss_pred cCcCcCCcC
Confidence 355555555
No 134
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.77 E-value=23 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=15.1
Q ss_pred CCCccccchhccCCchHHHHHHhhhCCCccccccccccc
Q psy8466 332 IKNKCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEF 370 (431)
Q Consensus 332 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f 370 (431)
.+-.|+.||+.|.... ..|..|++||++|
T Consensus 8 tKridPetg~KFYDLN----------rdPiVsPytG~s~ 36 (129)
T COG4530 8 TKRIDPETGKKFYDLN----------RDPIVSPYTGKSY 36 (129)
T ss_pred ccccCccccchhhccC----------CCccccCcccccc
Confidence 3345666666654321 1255666666666
No 135
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=33.53 E-value=21 Score=28.63 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=6.3
Q ss_pred ccccccccccCC
Q psy8466 361 YKCDLCSKEFSW 372 (431)
Q Consensus 361 ~~C~~C~~~f~~ 372 (431)
++|..||+.|..
T Consensus 2 H~Ct~Cg~~f~d 13 (131)
T PF09845_consen 2 HQCTKCGRVFED 13 (131)
T ss_pred cccCcCCCCcCC
Confidence 445555555544
No 136
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=33.43 E-value=10 Score=28.29 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=6.1
Q ss_pred CccCccccccC
Q psy8466 415 YKCGLCSKEFS 425 (431)
Q Consensus 415 ~~C~~C~~~f~ 425 (431)
+.|..|++.|.
T Consensus 54 W~C~~C~~~~A 64 (91)
T TIGR00280 54 WTCRKCGAKFA 64 (91)
T ss_pred EEcCCCCCEEe
Confidence 55555555554
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.81 E-value=12 Score=39.55 Aligned_cols=40 Identities=28% Similarity=0.575 Sum_probs=24.4
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccccccCChHHHHHHHHhcCCCCCccCccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFSSKRILTEHMKLHQGITYKCGLCSKE 423 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~~~~~L~~H~~~H~g~~~~C~~C~~~ 423 (431)
++|+.|+.. |..|+.. ....|.+||+.- ..|..|+.||..
T Consensus 445 ~~Cp~Cd~~------lt~H~~~---~~L~CH~Cg~~~--------------~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSP------LTLHKAT---GQLRCHYCGYQE--------------PIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcc------eEEecCC---CeeEeCCCCCCC--------------CCCCCCCCCCCC
Confidence 467777654 3333322 125788887651 268899999865
No 138
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=31.05 E-value=30 Score=31.10 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=20.1
Q ss_pred hcCCCCcccccccccCCHHHHHHHHHHh---cCCCCccCccCc
Q psy8466 194 HQGLKNKCDLCSKEFSSKSYLTEHMKLH---QGIKNKCDLCSK 233 (431)
Q Consensus 194 h~~~~~~C~~C~~~f~~~~~L~~H~~~h---~~~~~~C~~C~~ 233 (431)
|.|..|+|..|.. |.-...--.|+.+- .++.|+|.-|++
T Consensus 138 hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNr 179 (314)
T PF06524_consen 138 HGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNR 179 (314)
T ss_pred CCCeEEEeecCCC-eeeccchhhhhhhhhhhhccccccccccc
Confidence 4444477777764 33333334454432 234466666655
No 139
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=30.91 E-value=13 Score=27.73 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=6.0
Q ss_pred CccCccccccC
Q psy8466 415 YKCGLCSKEFS 425 (431)
Q Consensus 415 ~~C~~C~~~f~ 425 (431)
+.|..|++.|.
T Consensus 55 W~C~~C~~~~A 65 (90)
T PTZ00255 55 WRCKGCKKTVA 65 (90)
T ss_pred EEcCCCCCEEe
Confidence 55555555554
No 140
>KOG4377|consensus
Probab=29.46 E-value=18 Score=34.72 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.2
Q ss_pred ccccccCChHHHHHHHHhcCC
Q psy8466 392 LCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 392 ~C~~~F~~~~~L~~H~~~H~g 412 (431)
-|+..|...+.+..|.|.|..
T Consensus 408 Gc~~tl~s~sqm~shkrkheR 428 (480)
T KOG4377|consen 408 GCEATLYSVSQMASHKRKHER 428 (480)
T ss_pred CCceEEEehhhhhhhhhhhhh
Confidence 389999999999999988864
No 141
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=29.45 E-value=38 Score=31.30 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=29.9
Q ss_pred ccccchhccCCchHHHHHHhhhCCCcccccccccccCCHHHHHHHHHHh
Q psy8466 335 KCDLCSKEFSHKSNLTKHMNLHQGIRYKCDLCSKEFSWKGHLTEHRKLH 383 (431)
Q Consensus 335 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H 383 (431)
-|-.|.-.|.....-..- ..-+..+|+|+.|...|-.--+.-.|...|
T Consensus 364 ~Cf~CQ~~fp~~~~~~~~-~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 364 HCFVCQGPFPKPPVSPFD-ESTSSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred cceeccCCCCCCCCCccc-ccccccceechhhhhhhhhhhHHHHHHHHh
Confidence 477888877654321000 011123688888888888887777777766
No 142
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=29.37 E-value=18 Score=38.34 Aligned_cols=8 Identities=50% Similarity=1.252 Sum_probs=0.0
Q ss_pred ccccchhc
Q psy8466 335 KCDLCSKE 342 (431)
Q Consensus 335 ~C~~C~k~ 342 (431)
.|+.||..
T Consensus 657 ~Cp~Cg~~ 664 (900)
T PF03833_consen 657 RCPKCGKE 664 (900)
T ss_dssp --------
T ss_pred cCcccCCc
Confidence 56666543
No 143
>KOG0782|consensus
Probab=28.95 E-value=15 Score=36.67 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCC-CccccchhccCCchHHHHHHhhhCCC--cccccccccccCCHH
Q psy8466 320 SYLTEHMKLHQGIK-NKCDLCSKEFSHKSNLTKHMNLHQGI--RYKCDLCSKEFSWKG 374 (431)
Q Consensus 320 ~~l~~H~~~h~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~C~~C~~~f~~~~ 374 (431)
+.+.+|-.+|.... -+|..|+|.|.++-.+ |..+ -..|..|..+|..+.
T Consensus 239 ~~fvrHHWVHrrRqeGkC~~CgKgFQQKf~F------hsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 239 SGFVRHHWVHRRRQEGKCNTCGKGFQQKFFF------HSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred ccchHHhHhhHhhhccccchhhhhhhhheee------ccccEEEEEehHHHHHhhcch
Confidence 35666655554433 3788888887655332 3332 367888887776655
No 144
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.55 E-value=19 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=5.0
Q ss_pred CccCcccccc
Q psy8466 415 YKCGLCSKEF 424 (431)
Q Consensus 415 ~~C~~C~~~f 424 (431)
..|+.||..|
T Consensus 23 V~Cp~CGael 32 (54)
T TIGR01206 23 VICDECGAEL 32 (54)
T ss_pred EeCCCCCCEE
Confidence 4555555443
No 145
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.29 E-value=9.7 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=15.4
Q ss_pred ccccccccccCCHHHHHHHHHHhCCCCCcccccccccC
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFS 398 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~ 398 (431)
.+|+.||+.|....++ -.|+.|+..+.
T Consensus 6 ~~C~~Cg~~~~~~dDi-----------VvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDI-----------VVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCCCCE-----------EECCCCCCccc
Confidence 3577777766543222 25777776643
No 146
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=27.80 E-value=11 Score=21.26 Aligned_cols=8 Identities=63% Similarity=1.261 Sum_probs=3.3
Q ss_pred cccccccc
Q psy8466 363 CDLCSKEF 370 (431)
Q Consensus 363 C~~C~~~f 370 (431)
|-.|++.|
T Consensus 3 CiDC~~~F 10 (28)
T PF08790_consen 3 CIDCSKDF 10 (28)
T ss_dssp ETTTTEEE
T ss_pred eecCCCCc
Confidence 33444444
No 147
>KOG2807|consensus
Probab=27.61 E-value=82 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=22.3
Q ss_pred CCCCCcCCcccCChhHHHHHHhHhcCCCCCCCCCC
Q psy8466 252 KNKCDLCSKEFSTKSYLTEHMKLHQGIKNKCDLCS 286 (431)
Q Consensus 252 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~ 286 (431)
.+.|..|...|-.--..-.|...|. |+.|.
T Consensus 345 ~y~C~~Ck~~FCldCDv~iHesLh~-----CpgCe 374 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFIHESLHN-----CPGCE 374 (378)
T ss_pred cEEchhccceeeccchHHHHhhhhc-----CCCcC
Confidence 4578888888888888877876663 66665
No 148
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.31 E-value=39 Score=22.38 Aligned_cols=9 Identities=44% Similarity=1.006 Sum_probs=4.2
Q ss_pred cccchhccC
Q psy8466 336 CDLCSKEFS 344 (431)
Q Consensus 336 C~~C~k~f~ 344 (431)
|..|++.|.
T Consensus 5 C~~C~~~F~ 13 (57)
T cd00065 5 CMGCGKPFT 13 (57)
T ss_pred CcccCcccc
Confidence 444444444
No 149
>KOG2593|consensus
Probab=27.25 E-value=32 Score=33.46 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=20.8
Q ss_pred CccccchhccCCchHHHHHHhhhC-CCccccccccc
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNLHQ-GIRYKCDLCSK 368 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~h~-~~~~~C~~C~~ 368 (431)
|.|+.|.+.|.....++- .-. ...|.|..|+-
T Consensus 129 Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQL---LDNETGEFHCENCGG 161 (436)
T ss_pred ccCCccccchhhhHHHHh---hcccCceEEEecCCC
Confidence 788888888876555432 211 12588888874
No 150
>KOG2807|consensus
Probab=26.73 E-value=66 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=20.0
Q ss_pred CCCCCchhhccCChhHHHHHHHHhcCCCCccccch
Q psy8466 306 KNKCDLCSKEFSRKSYLTEHMKLHQGIKNKCDLCS 340 (431)
Q Consensus 306 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~ 340 (431)
.|.|..|...|-.--....|-..|. |+.|.
T Consensus 345 ~y~C~~Ck~~FCldCDv~iHesLh~-----CpgCe 374 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFIHESLHN-----CPGCE 374 (378)
T ss_pred cEEchhccceeeccchHHHHhhhhc-----CCCcC
Confidence 4678888777776666666655554 66664
No 151
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.64 E-value=37 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=10.6
Q ss_pred cccccccccCChHHH
Q psy8466 389 KCDLCSKEFSSKRIL 403 (431)
Q Consensus 389 ~C~~C~~~F~~~~~L 403 (431)
.|.+||+.|+++...
T Consensus 10 ~C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKW 24 (42)
T ss_pred cCcccCCcchHHHHH
Confidence 588888888776544
No 152
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=25.87 E-value=28 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=10.8
Q ss_pred CCccCccccccCCC
Q psy8466 414 TYKCGLCSKEFSCK 427 (431)
Q Consensus 414 ~~~C~~C~~~f~~~ 427 (431)
||.|..|++.|=..
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 78899898888443
No 153
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=24.83 E-value=26 Score=28.83 Aligned_cols=9 Identities=33% Similarity=1.538 Sum_probs=4.1
Q ss_pred cccccccccc
Q psy8466 361 YKCDLCSKEF 370 (431)
Q Consensus 361 ~~C~~C~~~f 370 (431)
|.|. |+..|
T Consensus 118 Y~C~-C~q~~ 126 (156)
T COG3091 118 YRCQ-CQQHY 126 (156)
T ss_pred EEee-cCCcc
Confidence 4444 44443
No 154
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=24.66 E-value=41 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=0.0
Q ss_pred CCCCCCchhhccCChhHHHHHHHHhcCCC-CccccchhccCCc
Q psy8466 305 LKNKCDLCSKEFSRKSYLTEHMKLHQGIK-NKCDLCSKEFSHK 346 (431)
Q Consensus 305 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~k~f~~~ 346 (431)
.+|.|+.||.+..+. |.. |+|+.||.++...
T Consensus 349 ~~p~Cp~Cg~~m~S~-----------G~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 349 VNPVCPRCGGRMKSA-----------GRNGFRCKKCGTRARET 380 (421)
T ss_pred cCCCCCccCCchhhc-----------CCCCcccccccccCCcc
No 155
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=24.47 E-value=16 Score=27.18 Aligned_cols=11 Identities=27% Similarity=1.044 Sum_probs=6.2
Q ss_pred CccCccccccC
Q psy8466 415 YKCGLCSKEFS 425 (431)
Q Consensus 415 ~~C~~C~~~f~ 425 (431)
+.|..|++.|.
T Consensus 55 W~C~~C~~~~A 65 (90)
T PRK03976 55 WECRKCGAKFA 65 (90)
T ss_pred EEcCCCCCEEe
Confidence 55666665554
No 156
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=24.44 E-value=32 Score=22.52 Aligned_cols=8 Identities=25% Similarity=0.999 Sum_probs=3.3
Q ss_pred cccccccc
Q psy8466 361 YKCDLCSK 368 (431)
Q Consensus 361 ~~C~~C~~ 368 (431)
+.|..||.
T Consensus 38 ~~C~~Cgy 45 (50)
T PRK00432 38 WHCGKCGY 45 (50)
T ss_pred EECCCcCC
Confidence 34444443
No 157
>PLN02294 cytochrome c oxidase subunit Vb
Probab=23.97 E-value=23 Score=29.74 Aligned_cols=17 Identities=29% Similarity=0.886 Sum_probs=8.3
Q ss_pred HhcCCCCCccCcccccc
Q psy8466 408 KLHQGITYKCGLCSKEF 424 (431)
Q Consensus 408 ~~H~g~~~~C~~C~~~f 424 (431)
+.+.|+|++|+.||.-|
T Consensus 135 ~L~kGkp~RCpeCG~~f 151 (174)
T PLN02294 135 WLEKGKSFECPVCTQYF 151 (174)
T ss_pred EecCCCceeCCCCCCEE
Confidence 33444555555555544
No 158
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=23.58 E-value=42 Score=21.88 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=5.2
Q ss_pred ccccccccccC
Q psy8466 361 YKCDLCSKEFS 371 (431)
Q Consensus 361 ~~C~~C~~~f~ 371 (431)
+.|..||..|.
T Consensus 5 l~C~dCg~~Fv 15 (49)
T PF13451_consen 5 LTCKDCGAEFV 15 (49)
T ss_pred EEcccCCCeEE
Confidence 44445554444
No 159
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=23.54 E-value=54 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.603 Sum_probs=21.4
Q ss_pred cccccccccccCChHHHHHHHHHhcCC
Q psy8466 171 RYKCDLCSKKFSTKSYLTAHMKLHQGL 197 (431)
Q Consensus 171 ~~~C~~C~~~f~~~~~L~~H~~~h~~~ 197 (431)
.|.|+.|+|.|.-..-...|+..-|..
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred EECCCCCCcccCChHHHHHHHhhcCHH
Confidence 699999999999999999999876654
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.19 E-value=7.3 Score=36.40 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=27.9
Q ss_pred CccccchhccCCchHHHHHHhhhCCCc-ccccccccccCCHHHHHHHHHHhCCCCCcccccccccCChHHHHHHHHhcCC
Q psy8466 334 NKCDLCSKEFSHKSNLTKHMNLHQGIR-YKCDLCSKEFSWKGHLTEHRKLHQDIKNKCDLCSKEFSSKRILTEHMKLHQG 412 (431)
Q Consensus 334 ~~C~~C~k~f~~~~~L~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~F~~~~~L~~H~~~H~g 412 (431)
-.||+||..-. .+.|..--. .|.+ ..|..|+.... -.+..|+.||..-...-.+.. ...-.+
T Consensus 173 g~CPvCGs~P~-~s~l~~~~~--~G~R~L~Cs~C~t~W~-------------~~R~~Cp~Cg~~~~~~l~~~~-~e~~~~ 235 (290)
T PF04216_consen 173 GYCPVCGSPPV-LSVLRGGER--EGKRYLHCSLCGTEWR-------------FVRIKCPYCGNTDHEKLEYFT-VEGEPA 235 (290)
T ss_dssp SS-TTT---EE-EEEEE--------EEEEEETTT--EEE---------------TTS-TTT---SS-EEE---------S
T ss_pred CcCCCCCCcCc-eEEEecCCC--CccEEEEcCCCCCeee-------------ecCCCCcCCCCCCCcceeeEe-cCCCCc
Confidence 37999997421 111111111 2544 67999986432 124579999987554432211 011112
Q ss_pred -CCCccCcccccc
Q psy8466 413 -ITYKCGLCSKEF 424 (431)
Q Consensus 413 -~~~~C~~C~~~f 424 (431)
+-+.|..|+..+
T Consensus 236 ~rve~C~~C~~Yl 248 (290)
T PF04216_consen 236 YRVEVCESCGSYL 248 (290)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEECCcccchH
Confidence 447899997654
No 161
>KOG1280|consensus
Probab=22.17 E-value=65 Score=30.37 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=0.0
Q ss_pred ccccccccccCCHHHHHHHHH-HhCCCCC--cccccc
Q psy8466 361 YKCDLCSKEFSWKGHLTEHRK-LHQDIKN--KCDLCS 394 (431)
Q Consensus 361 ~~C~~C~~~f~~~~~L~~H~~-~H~~~~~--~C~~C~ 394 (431)
|.|++|+..=.+...|..|+. .|-+..+ .|++|+
T Consensus 80 ftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 80 FTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred ccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
No 162
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.90 E-value=46 Score=23.17 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=4.2
Q ss_pred Ccccccccc
Q psy8466 388 NKCDLCSKE 396 (431)
Q Consensus 388 ~~C~~C~~~ 396 (431)
|.|+.||..
T Consensus 47 ~~C~~Cg~~ 55 (69)
T PF07282_consen 47 FTCPNCGFE 55 (69)
T ss_pred EEcCCCCCE
Confidence 444444444
No 163
>KOG3408|consensus
Probab=21.76 E-value=46 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=15.4
Q ss_pred CcccccccccCChHHHHHHHHh
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
|.|-.|.+-|.+...|..|.++
T Consensus 58 fyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 58 FYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eehhhhhhhhcchHHHHHHHhc
Confidence 4577777777777777777654
No 164
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=21.31 E-value=22 Score=29.48 Aligned_cols=7 Identities=29% Similarity=1.236 Sum_probs=2.8
Q ss_pred ccccchh
Q psy8466 335 KCDLCSK 341 (431)
Q Consensus 335 ~C~~C~k 341 (431)
.|+.|+.
T Consensus 125 ~C~~C~~ 131 (157)
T PF10263_consen 125 RCPSCGR 131 (157)
T ss_pred EcCCCCC
Confidence 3444443
No 165
>KOG0717|consensus
Probab=21.27 E-value=55 Score=32.25 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=13.2
Q ss_pred CcccccccccCChHHHHHHHHh
Q psy8466 388 NKCDLCSKEFSSKRILTEHMKL 409 (431)
Q Consensus 388 ~~C~~C~~~F~~~~~L~~H~~~ 409 (431)
+.|.+|.|+|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 4466666666666666666543
No 166
>PRK04351 hypothetical protein; Provisional
Probab=21.12 E-value=35 Score=28.27 Aligned_cols=12 Identities=17% Similarity=0.689 Sum_probs=5.7
Q ss_pred CCCccccccccc
Q psy8466 386 IKNKCDLCSKEF 397 (431)
Q Consensus 386 ~~~~C~~C~~~F 397 (431)
.+|.|..|+-.+
T Consensus 131 ~~yrCg~C~g~L 142 (149)
T PRK04351 131 KRYRCGKCRGKL 142 (149)
T ss_pred CcEEeCCCCcEe
Confidence 335555555433
No 167
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=20.83 E-value=40 Score=26.47 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.2
Q ss_pred cccccccccc
Q psy8466 361 YKCDLCSKEF 370 (431)
Q Consensus 361 ~~C~~C~~~f 370 (431)
+.|..||..|
T Consensus 71 ~~C~~Cg~~~ 80 (113)
T PRK12380 71 AWCWDCSQVV 80 (113)
T ss_pred EEcccCCCEE
Confidence 3344444333
No 168
>KOG3408|consensus
Probab=20.82 E-value=54 Score=25.82 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.5
Q ss_pred cccccccccccCCHHHHHHHHH
Q psy8466 360 RYKCDLCSKEFSWKGHLTEHRK 381 (431)
Q Consensus 360 ~~~C~~C~~~f~~~~~L~~H~~ 381 (431)
.|.|-.|.+-|.+...|..|.+
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHh
Confidence 3889999999999999999976
No 169
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=25 Score=36.54 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.6
Q ss_pred CCCcCCcccCChhHH
Q psy8466 254 KCDLCSKEFSTKSYL 268 (431)
Q Consensus 254 ~C~~C~~~f~~~~~l 268 (431)
.|..||-+|+-...|
T Consensus 125 ~CT~CGPRfTIi~al 139 (750)
T COG0068 125 NCTNCGPRFTIIEAL 139 (750)
T ss_pred ccCCCCcceeeeccC
Confidence 799999999865443
No 170
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=20.16 E-value=31 Score=22.37 Aligned_cols=12 Identities=50% Similarity=1.270 Sum_probs=8.0
Q ss_pred cccccccccccC
Q psy8466 360 RYKCDLCSKEFS 371 (431)
Q Consensus 360 ~~~C~~C~~~f~ 371 (431)
+|.|+.|..+|+
T Consensus 7 ry~CDLCn~~~p 18 (57)
T PF14445_consen 7 RYSCDLCNSSHP 18 (57)
T ss_pred hHhHHhhcccCc
Confidence 477777776654
Done!