BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8471
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
Length = 274
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 63 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAP-------------AANLCLGSGVHGG 109
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 110 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALN 169
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 170 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 229
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K YVVIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 230 KAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 274
>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
Length = 274
Score = 306 bits (784), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 63 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAP-------------GANLCLGSGVHGG 109
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 110 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALN 169
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 170 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 229
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K YVVIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 230 KAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 274
>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 294
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 83 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAP-------------GANLCLGSGVHGG 129
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 130 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALN 189
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 190 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 249
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K YVVIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 250 KAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 294
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 98 LQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGD----- 152
+QL AE++S T+ LS AI+ + C +V+ + L PALA + L +
Sbjct: 1501 MQLSAELQSDTEEILSKAIRLIQ------ACVDVLSSNGWLSPALAAMELAQMVTQAMWS 1554
Query: 153 ---------IFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFP 203
F E+I T G ES F+ + + + + D Q + A N +P
Sbjct: 1555 KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 1614
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 98 LQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGD----- 152
+QL AE++S T+ LS AI+ + C +V+ + L PALA + L +
Sbjct: 1501 MQLSAELQSDTEEILSKAIRLIQ------ACVDVLSSNGWLSPALAAMELAQMVTQAMWS 1554
Query: 153 ---------IFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFP 203
F E+I T G ES F+ + + + + D Q + A N +P
Sbjct: 1555 KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 1614
>pdb|3UHJ|A Chain A, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|B Chain B, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|C Chain C, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|D Chain D, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|E Chain E, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|F Chain F, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|G Chain G, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3UHJ|H Chain H, Crystal Structure Of A Probable Glycerol Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 387
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 97 WLQLRAEIESTTDNWL-----------SLAIKCLNIINSRSTCTNVIVTCTQLVPAL--- 142
W + R+ IES TDN++ ++A C +++ + + V L PA+
Sbjct: 198 WFEARSNIESRTDNYVAGGFPATEAGXAIARHCQDVLTRDAVKAKIAVEAGLLTPAVENI 257
Query: 143 --AKVLLFGLG 151
A LL GLG
Sbjct: 258 IEANTLLSGLG 268
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 145 VLLFGLGDIFQVENIYSSTKIGKESCFERIG 175
+L +G GDIF++ ++ +G++ +E +
Sbjct: 368 ILYYGFGDIFRISSMVVMENVGQQKLYEMVS 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,032,670
Number of Sequences: 62578
Number of extensions: 345665
Number of successful extensions: 618
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 7
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)