BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8471
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05201|EYA_DROME Developmental protein eyes absent OS=Drosophila melanogaster GN=eya
PE=1 SV=1
Length = 766
Score = 335 bits (860), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 177/227 (77%), Gaps = 14/227 (6%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPP--PPALCLSSGVR 58
ECDQVHIDDV SDDNGQDL YNF DGF H PP PP LCL +GVR
Sbjct: 552 ECDQVHIDDVSSDDNGQDLSAYNFATDGF------------HTNTPPGAPPNLCLPTGVR 599
Query: 59 GGVDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKC 118
GGVDWMRKLAFRYRKIKD YN+YR +VG LLGP KRE WLQ+R+EIE TDNW +LA+KC
Sbjct: 600 GGVDWMRKLAFRYRKIKDIYNSYRGNVGTLLGPGKREAWLQIRSEIEVATDNWATLALKC 659
Query: 119 LNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRF 178
L++I+ R C NV+VT TQL PALAKVLLFGLG IF +ENIYS+ KIG E+C+ERI TRF
Sbjct: 660 LSMISQRENCVNVLVTSTQLAPALAKVLLFGLGGIFNIENIYSAHKIGHETCYERIVTRF 719
Query: 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
GRK TYVVIGDG +EE AAK NFPFWR+S+HSD+ ALY ALDMGFL
Sbjct: 720 GRKSTYVVIGDGNEEETAAKAMNFPFWRISAHSDIRALYTALDMGFL 766
>sp|P97767|EYA1_MOUSE Eyes absent homolog 1 OS=Mus musculus GN=Eya1 PE=1 SV=3
Length = 591
Score = 325 bits (834), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 151/225 (67%), Positives = 182/225 (80%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVHIDDV SDDNGQDL YNFG DGF P +A LCL++GVRGG
Sbjct: 380 ECDQVHIDDVSSDDNGQDLSTYNFGTDGF--PAAATSAN-----------LCLATGVRGG 426
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGLLGP KRE WLQLRAEIE+ TD+WL+LA+K L+
Sbjct: 427 VDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALS 486
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+I+SR+ C N++VT TQL+PALAKVLL+GLG +F +ENIYS+TKIGKESCFERI RFGR
Sbjct: 487 LIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGR 546
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
KV YVVIGDG +EE AK++ PFWRVSSHSDL AL++AL++ +L
Sbjct: 547 KVVYVVIGDGVEEEQGAKKHAMPFWRVSSHSDLMALHHALELEYL 591
>sp|Q99502|EYA1_HUMAN Eyes absent homolog 1 OS=Homo sapiens GN=EYA1 PE=1 SV=2
Length = 592
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 150/225 (66%), Positives = 182/225 (80%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVHIDDV SDDNGQDL YNFG DGF P +A LCL++GVRGG
Sbjct: 381 ECDQVHIDDVSSDDNGQDLSTYNFGTDGF--PAAATSAN-----------LCLATGVRGG 427
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGLLGP KRE WLQLRAEIE+ TD+WL+LA+K L+
Sbjct: 428 VDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALS 487
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+I+SR+ C N++VT TQL+PALAKVLL+GLG +F +ENIYS+TKIGKESCFERI RFGR
Sbjct: 488 LIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGR 547
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
KV YVVIGDG +EE AK++ PFWR+SSHSDL AL++AL++ +L
Sbjct: 548 KVVYVVIGDGVEEEQGAKKHAMPFWRISSHSDLMALHHALELEYL 592
>sp|Q9Z191|EYA4_MOUSE Eyes absent homolog 4 OS=Mus musculus GN=Eya4 PE=2 SV=2
Length = 616
Score = 315 bits (808), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 146/225 (64%), Positives = 174/225 (77%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVHIDDV SDDNGQDL Y+F DGF LCL +GVRGG
Sbjct: 405 ECDQVHIDDVSSDDNGQDLSTYSFATDGFHAAASSAN-------------LCLPTGVRGG 451
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGLLGP KR+ WLQLRAEIE TD+WL+ A+K L+
Sbjct: 452 VDWMRKLAFRYRRVKELYNTYKNNVGGLLGPAKRDAWLQLRAEIEGLTDSWLTNALKSLS 511
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
II++RS C NV+VT TQL+PALAKVLL+ LG F +ENIYS+TKIGKESCFERI +RFG
Sbjct: 512 IISTRSNCVNVLVTTTQLIPALAKVLLYSLGGAFPIENIYSATKIGKESCFERIVSRFGT 571
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
+TYVVIGDG+DEE AA Q+N PFWR+SSHSDL AL+ AL++ +L
Sbjct: 572 NITYVVIGDGRDEEHAANQHNMPFWRISSHSDLLALHQALELEYL 616
>sp|O95677|EYA4_HUMAN Eyes absent homolog 4 OS=Homo sapiens GN=EYA4 PE=1 SV=2
Length = 639
Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/225 (65%), Positives = 174/225 (77%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVHIDDV SDDNGQDL Y+F DGF LCL +GVRGG
Sbjct: 428 ECDQVHIDDVSSDDNGQDLSTYSFATDGFHAAASSAN-------------LCLPTGVRGG 474
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGLLGP KR+ WLQLRAEIE TD+WL+ A+K L+
Sbjct: 475 VDWMRKLAFRYRRVKELYNTYKNNVGGLLGPAKRDAWLQLRAEIEGLTDSWLTNALKSLS 534
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
II++RS C NV+VT TQL+PALAKVLL+ LG F +ENIYS+TKIGKESCFERI RFGR
Sbjct: 535 IISTRSNCINVLVTTTQLIPALAKVLLYSLGGAFPIENIYSATKIGKESCFERIMQRFGR 594
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
KV YVVIGDG +EE AAK++N PFWR+SSHSDL AL+ AL++ +L
Sbjct: 595 KVVYVVIGDGVEEEQAAKKHNMPFWRISSHSDLLALHQALELEYL 639
>sp|O08575|EYA2_MOUSE Eyes absent homolog 2 OS=Mus musculus GN=Eya2 PE=1 SV=1
Length = 532
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF DGF + P + LCL +GV GG
Sbjct: 321 DCDQIHVDDVSSDDNGQDLSTYNFSTDGFHSTAPGAS-------------LCLGTGVHGG 367
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN YRN+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 368 VDWMRKLAFRYRRVKEMYNTYRNNVGGLIGAPKRETWLQLRAELEALTDLWLTHSLKALN 427
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 428 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 487
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K Y+VIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 488 KAVYIVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 532
>sp|O00167|EYA2_HUMAN Eyes absent homolog 2 OS=Homo sapiens GN=EYA2 PE=1 SV=2
Length = 538
Score = 307 bits (787), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 327 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGAN-------------LCLGSGVHGG 373
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 374 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALN 433
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 434 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 493
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K YVVIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 494 KAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 538
>sp|Q58DB6|EYA2_BOVIN Eyes absent homolog 2 OS=Bos taurus GN=EYA2 PE=2 SV=1
Length = 537
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 140/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 326 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGAN-------------LCLGSGVHGG 372
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 373 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGAPKRETWLQLRAELEALTDLWLTHSLKALN 432
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 433 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 492
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K Y+VIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 493 KAVYIVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 537
>sp|Q99504|EYA3_HUMAN Eyes absent homolog 3 OS=Homo sapiens GN=EYA3 PE=1 SV=3
Length = 573
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/225 (60%), Positives = 171/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVH++DV SDDNGQDL Y+F DGF G + S GV+GG
Sbjct: 362 ECDQVHVEDVASDDNGQDLSNYSFSTDGFSGSGGSGSH-------------GSSVGVQGG 408
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYRK+++ Y+ ++++VGGLL P ++E +LRAEIE TD+WL A+K L
Sbjct: 409 VDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLRAEIEVLTDSWLGTALKSLL 468
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+I SR C NV++T TQLVPALAKVLL+GLG+IF +ENIYS+TKIGKESCFERI +RFG+
Sbjct: 469 LIQSRKNCVNVLITTTQLVPALAKVLLYGLGEIFPIENIYSATKIGKESCFERIVSRFGK 528
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
KVTYVVIGDG+DEE AAKQ+N PFWR+++H DL +L+ AL++ FL
Sbjct: 529 KVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL 573
>sp|P97480|EYA3_MOUSE Eyes absent homolog 3 OS=Mus musculus GN=Eya3 PE=1 SV=2
Length = 510
Score = 278 bits (710), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/225 (60%), Positives = 171/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
ECDQVH++DV SDDNGQDL Y+F DGF G + S GV+GG
Sbjct: 299 ECDQVHVEDVASDDNGQDLSNYSFSTDGFSGSGGSGSH-------------GSSVGVQGG 345
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYRK+++ Y+ ++++VGGLL P ++E +LRAEIE TD+WL A+K L
Sbjct: 346 VDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLRAEIEVLTDSWLGTALKSLL 405
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+I SR C NV++T TQLVPALAKVLL+GLG+IF +ENIYS+TKIGKESCFERI +RFG+
Sbjct: 406 LIQSRKNCANVLITTTQLVPALAKVLLYGLGEIFPIENIYSATKIGKESCFERIVSRFGK 465
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
KVTYVVIGDG+DEE AAKQ+N PFWR+++H DL +L+ AL++ FL
Sbjct: 466 KVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL 510
>sp|Q9YHA1|EYA4_TAKRU Eyes absent homolog 4 (Fragment) OS=Takifugu rubripes GN=eya4 PE=3
SV=1
Length = 119
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 102/119 (85%)
Query: 65 RKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINS 124
RKLAFRYR++K+ Y Y+N+VGGLLGP KR+ WLQLRAE+E+ TD+WL+ A+K L+II+S
Sbjct: 1 RKLAFRYRRVKELYTTYKNNVGGLLGPAKRDAWLQLRAEVEALTDSWLTHALKSLSIISS 60
Query: 125 RSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVT 183
RS C NV+VT TQL+PALAKVLL+ LG +F +ENIYS+TKIGKESCFERI +RFG +T
Sbjct: 61 RSNCVNVLVTTTQLIPALAKVLLYSLGAVFPIENIYSATKIGKESCFERIVSRFGTNIT 119
>sp|Q9YH98|EYA4_CHICK Eyes absent homolog 4 (Fragment) OS=Gallus gallus GN=EYA4 PE=3 SV=1
Length = 119
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 102/119 (85%)
Query: 65 RKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINS 124
RKLAFRYR++K+ YN Y+N++GGLLGP KR+ WLQLRAEIE+ TD+WL+ A+K L+II++
Sbjct: 1 RKLAFRYRRVKELYNTYKNNIGGLLGPAKRDAWLQLRAEIEALTDSWLTNALKSLSIIST 60
Query: 125 RSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVT 183
RS C NV+VT TQL+PALAKVLL+ LG F +ENIYS+TKIGKESCFERI +RFG +T
Sbjct: 61 RSNCVNVLVTTTQLIPALAKVLLYSLGGAFPIENIYSATKIGKESCFERIVSRFGTNIT 119
>sp|Q9YHA0|EYA1_CHICK Eyes absent homolog 1 (Fragment) OS=Gallus gallus GN=EYA1 PE=3 SV=1
Length = 119
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 104/119 (87%)
Query: 65 RKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINS 124
RKLAFRYR++K+ YN Y+N+VGGLLGP KRE WLQLRAEIE+ TD+WL+LA+K L +I+S
Sbjct: 1 RKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALTLIHS 60
Query: 125 RSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVT 183
R+ C N++VT TQL+PALAKVLL+GLG +F +ENIYS+TKIGKESCFERI RFGRKV
Sbjct: 61 RTNCVNILVTTTQLIPALAKVLLYGLGVVFPIENIYSATKIGKESCFERIIQRFGRKVV 119
>sp|Q9YH99|EYA3_CHICK Eyes absent homolog 3 (Fragment) OS=Gallus gallus GN=EYA3 PE=2 SV=1
Length = 119
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 97/119 (81%)
Query: 65 RKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINS 124
RKLAFRYR++++ Y+ Y+ +VGGLL P KRE +LR +IE TD+WL A+K L +I S
Sbjct: 1 RKLAFRYRRVREIYDKYKTNVGGLLSPQKREALQRLRTDIEVLTDSWLETALKSLLLIQS 60
Query: 125 RSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVT 183
R C N+++T TQLVPALAKVLL+GLG++F +ENIYS+TKIGKESCFERI +RFG+KVT
Sbjct: 61 RKNCVNILITTTQLVPALAKVLLYGLGEVFPIENIYSATKIGKESCFERIVSRFGKKVT 119
>sp|P87261|YD537_YEAST Putative uncharacterized protein YDR537C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YDR537C PE=5
SV=1
Length = 201
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 117 KCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLG 151
K ++ +NS STC ++I + T + P +A +LFGLG
Sbjct: 102 KWVSTLNSFSTCRSLIPSATPVAPVIATTILFGLG 136
>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) GN=1a
PE=1 SV=1
Length = 4468
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 66 KLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSR 125
K+A +Y K R G+ K +W L +I ++ WL C ++N
Sbjct: 621 KVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL-----CYQLVNGL 675
Query: 126 STCTNVIVTCTQLVPALAKVLLFGLGDIFQV 156
N ++T Q VP L K + F+V
Sbjct: 676 FAVANGVITFVQEVPELVKNFVDKFKAFFKV 706
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) GN=rep
PE=1 SV=1
Length = 7176
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 66 KLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSR 125
K+A +Y K R G+ K +W L +I ++ WL C ++N
Sbjct: 621 KVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWL-----CYQLVNGL 675
Query: 126 STCTNVIVTCTQLVPALAKVLLFGLGDIFQV 156
N ++T Q VP L K + F+V
Sbjct: 676 FAVANGVITFVQEVPELVKNFVDKFKAFFKV 706
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,647,880
Number of Sequences: 539616
Number of extensions: 4354957
Number of successful extensions: 9308
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9279
Number of HSP's gapped (non-prelim): 23
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)