Query psy8471
Match_columns 242
No_of_seqs 76 out of 78
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 19:43:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3107|consensus 100.0 3.9E-99 9E-104 709.0 17.0 213 1-225 256-468 (468)
2 TIGR01658 EYA-cons_domain eyes 100.0 1.2E-96 3E-101 661.8 17.3 196 1-225 63-274 (274)
3 PF13419 HAD_2: Haloacid dehal 97.5 0.00078 1.7E-08 51.8 9.0 90 115-207 82-176 (176)
4 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.0079 1.7E-07 47.7 14.4 89 113-206 88-182 (183)
5 PRK09456 ?-D-glucose-1-phospha 97.4 0.0023 5E-08 53.2 10.7 102 114-219 88-196 (199)
6 TIGR01454 AHBA_synth_RP 3-amin 97.4 0.0016 3.5E-08 53.9 9.3 93 113-208 78-175 (205)
7 TIGR02253 CTE7 HAD superfamily 97.4 0.0015 3.2E-08 54.1 9.1 95 114-211 98-198 (221)
8 TIGR02254 YjjG/YfnB HAD superf 97.2 0.0036 7.7E-08 51.5 9.9 92 114-209 101-199 (224)
9 TIGR03351 PhnX-like phosphonat 97.1 0.0076 1.6E-07 50.2 10.7 99 115-216 92-200 (220)
10 PRK13288 pyrophosphatase PpaX; 97.1 0.0058 1.3E-07 51.0 9.8 95 113-210 85-184 (214)
11 TIGR01990 bPGM beta-phosphoglu 97.0 0.0032 6.9E-08 50.5 7.6 91 112-207 89-184 (185)
12 PLN03243 haloacid dehalogenase 97.0 0.0056 1.2E-07 54.5 9.9 124 113-239 112-242 (260)
13 TIGR02247 HAD-1A3-hyp Epoxide 97.0 0.0042 9.1E-08 51.5 8.4 105 113-220 97-208 (211)
14 PRK14988 GMP/IMP nucleotidase; 97.0 0.005 1.1E-07 52.9 8.8 94 114-210 97-196 (224)
15 TIGR01993 Pyr-5-nucltdase pyri 96.9 0.0046 9.9E-08 50.4 7.8 76 129-206 99-183 (184)
16 PRK09449 dUMP phosphatase; Pro 96.9 0.017 3.7E-07 48.2 11.3 93 113-209 98-197 (224)
17 PHA02597 30.2 hypothetical pro 96.9 0.0077 1.7E-07 49.6 8.7 98 112-212 76-178 (197)
18 TIGR01428 HAD_type_II 2-haloal 96.8 0.01 2.2E-07 48.8 9.2 93 114-209 96-193 (198)
19 PRK13222 phosphoglycolate phos 96.8 0.018 4E-07 47.6 10.5 97 110-209 93-194 (226)
20 PLN02770 haloacid dehalogenase 96.8 0.02 4.3E-07 49.8 11.0 93 114-209 112-209 (248)
21 COG1011 Predicted hydrolase (H 96.6 0.022 4.7E-07 47.1 9.4 90 115-208 104-199 (229)
22 PRK13478 phosphonoacetaldehyde 96.5 0.04 8.7E-07 48.0 11.1 97 111-209 102-204 (267)
23 TIGR02009 PGMB-YQAB-SF beta-ph 96.4 0.014 3E-07 46.8 7.2 87 114-205 92-183 (185)
24 cd01427 HAD_like Haloacid deha 96.4 0.056 1.2E-06 39.3 9.5 42 165-206 96-138 (139)
25 TIGR01422 phosphonatase phosph 96.3 0.045 9.8E-07 47.0 10.1 95 113-209 102-202 (253)
26 TIGR02252 DREG-2 REG-2-like, H 96.3 0.026 5.6E-07 46.4 8.1 89 112-204 107-201 (203)
27 TIGR01449 PGP_bact 2-phosphogl 96.2 0.046 1E-06 44.9 9.3 93 113-209 88-186 (213)
28 PRK10563 6-phosphogluconate ph 96.0 0.018 3.9E-07 48.1 6.1 80 128-208 102-186 (221)
29 PRK13225 phosphoglycolate phos 95.9 0.11 2.3E-06 46.9 10.9 94 113-209 145-240 (273)
30 PLN02575 haloacid dehalogenase 95.9 0.081 1.8E-06 50.8 10.7 103 111-216 217-324 (381)
31 PLN02779 haloacid dehalogenase 95.8 0.12 2.7E-06 46.3 10.8 98 110-209 144-247 (286)
32 TIGR00338 serB phosphoserine p 95.6 0.25 5.4E-06 41.1 11.2 89 115-205 90-192 (219)
33 PRK06698 bifunctional 5'-methy 95.5 0.11 2.4E-06 49.4 9.8 91 115-209 335-428 (459)
34 PLN02940 riboflavin kinase 95.4 0.071 1.5E-06 50.1 8.3 93 115-210 98-196 (382)
35 PLN02811 hydrolase 95.4 0.098 2.1E-06 44.3 8.4 95 112-209 80-185 (220)
36 PRK13226 phosphoglycolate phos 95.3 0.22 4.8E-06 42.6 10.3 93 114-209 99-196 (229)
37 PRK10826 2-deoxyglucose-6-phos 95.3 0.12 2.7E-06 43.4 8.4 92 115-209 97-193 (222)
38 TIGR01685 MDP-1 magnesium-depe 95.1 0.21 4.5E-06 42.9 9.5 101 116-221 51-170 (174)
39 PRK11587 putative phosphatase; 95.1 0.18 3.9E-06 42.5 8.9 96 112-211 85-185 (218)
40 TIGR01549 HAD-SF-IA-v1 haloaci 94.9 0.24 5.1E-06 38.9 8.6 82 114-201 68-154 (154)
41 TIGR01489 DKMTPPase-SF 2,3-dik 94.7 0.18 3.9E-06 40.3 7.5 86 115-206 77-187 (188)
42 PRK10748 flavin mononucleotide 94.6 0.17 3.6E-06 43.7 7.6 87 115-210 118-210 (238)
43 PRK10725 fructose-1-P/6-phosph 94.5 0.2 4.3E-06 40.5 7.5 78 129-208 104-186 (188)
44 PRK13223 phosphoglycolate phos 94.5 0.3 6.4E-06 43.5 9.2 93 113-209 104-202 (272)
45 TIGR01691 enolase-ppase 2,3-di 94.4 0.28 6E-06 43.3 8.6 88 115-208 100-196 (220)
46 TIGR01662 HAD-SF-IIIA HAD-supe 94.2 0.53 1.2E-05 36.4 9.0 89 115-208 30-131 (132)
47 PRK06769 hypothetical protein; 93.1 1.1 2.4E-05 37.3 9.6 100 114-214 32-143 (173)
48 TIGR01491 HAD-SF-IB-PSPlk HAD- 93.1 0.64 1.4E-05 37.6 8.0 42 166-207 147-189 (201)
49 TIGR01548 HAD-SF-IA-hyp1 haloa 92.9 0.81 1.7E-05 37.9 8.5 81 116-199 112-196 (197)
50 PLN02954 phosphoserine phospha 92.4 2.2 4.7E-05 35.7 10.5 40 165-205 154-193 (224)
51 PRK08942 D,D-heptose 1,7-bisph 92.4 1.5 3.3E-05 36.1 9.4 46 167-212 105-151 (181)
52 TIGR01261 hisB_Nterm histidino 92.1 1.2 2.6E-05 37.2 8.7 44 166-209 104-148 (161)
53 TIGR01668 YqeG_hyp_ppase HAD s 91.6 1.9 4.1E-05 35.8 9.2 88 115-209 48-137 (170)
54 TIGR01460 HAD-SF-IIA Haloacid 91.6 0.25 5.4E-06 42.9 4.2 80 129-208 146-234 (236)
55 TIGR01672 AphA HAD superfamily 90.7 2.6 5.7E-05 37.8 9.9 87 115-208 119-211 (237)
56 TIGR00213 GmhB_yaeD D,D-heptos 90.5 2.4 5.2E-05 34.9 8.8 43 167-209 108-152 (176)
57 TIGR01681 HAD-SF-IIIC HAD-supe 90.4 2.3 4.9E-05 33.8 8.3 81 114-198 33-126 (128)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 90.3 1.8 3.9E-05 36.2 8.0 87 115-204 47-158 (166)
59 PLN02919 haloacid dehalogenase 90.1 4.2 9.1E-05 43.7 12.3 99 111-212 162-266 (1057)
60 TIGR01656 Histidinol-ppas hist 89.5 4.7 0.0001 32.3 9.5 44 165-208 101-145 (147)
61 PF13242 Hydrolase_like: HAD-h 88.4 0.78 1.7E-05 33.0 3.9 42 168-209 7-50 (75)
62 TIGR01457 HAD-SF-IIA-hyp2 HAD- 88.2 0.69 1.5E-05 40.6 4.2 46 165-210 176-225 (249)
63 PRK09484 3-deoxy-D-manno-octul 88.2 2.7 5.9E-05 35.2 7.6 78 128-213 65-143 (183)
64 TIGR01452 PGP_euk phosphoglyco 88.0 0.73 1.6E-05 40.9 4.3 97 111-209 144-248 (279)
65 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.0 0.62 1.3E-05 41.2 3.8 93 116-209 126-225 (257)
66 TIGR01488 HAD-SF-IB Haloacid D 87.3 9.1 0.0002 30.4 9.8 137 60-199 16-176 (177)
67 TIGR02726 phenyl_P_delta pheny 86.9 2.4 5.3E-05 36.0 6.7 80 131-217 54-134 (169)
68 PRK11133 serB phosphoserine ph 85.1 5.9 0.00013 37.0 8.8 99 113-215 184-297 (322)
69 COG0546 Gph Predicted phosphat 84.4 16 0.00034 31.3 10.5 97 111-210 90-191 (220)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 84.4 14 0.0003 30.2 9.8 95 111-207 88-197 (202)
71 TIGR01493 HAD-SF-IA-v2 Haloaci 82.8 1.5 3.4E-05 35.0 3.5 67 131-199 103-174 (175)
72 PRK05446 imidazole glycerol-ph 81.6 8.5 0.00019 36.8 8.5 44 166-209 105-149 (354)
73 COG5439 Uncharacterized conser 81.0 1 2.2E-05 37.1 1.8 40 174-224 72-111 (112)
74 TIGR01283 nifE nitrogenase mol 80.3 56 0.0012 31.5 13.6 125 74-208 263-420 (456)
75 TIGR01670 YrbI-phosphatas 3-de 79.8 9.1 0.0002 31.2 7.0 86 118-211 36-122 (154)
76 PRK11009 aphA acid phosphatase 79.7 19 0.00041 32.5 9.6 89 115-210 119-213 (237)
77 TIGR01459 HAD-SF-IIA-hyp4 HAD- 79.1 4.1 8.9E-05 35.2 5.1 93 113-208 141-241 (242)
78 PF13344 Hydrolase_6: Haloacid 78.2 8.2 0.00018 29.8 6.0 74 112-191 16-91 (101)
79 PHA02530 pseT polynucleotide k 77.6 27 0.00058 30.7 9.8 92 113-208 190-296 (300)
80 PLN02645 phosphoglycolate phos 77.2 3.9 8.5E-05 37.2 4.6 80 128-209 187-276 (311)
81 PRK13582 thrH phosphoserine ph 76.6 24 0.00051 29.0 8.6 85 115-205 73-168 (205)
82 TIGR01487 SPP-like sucrose-pho 74.4 6.4 0.00014 33.0 4.8 85 131-216 110-198 (215)
83 PRK09552 mtnX 2-hydroxy-3-keto 73.6 23 0.0005 30.0 8.1 37 170-206 148-185 (219)
84 TIGR03492 conserved hypothetic 71.2 27 0.00059 33.0 8.7 113 84-205 56-183 (396)
85 TIGR02932 vnfK_nitrog V-contai 70.5 58 0.0013 31.9 11.0 24 186-210 388-411 (457)
86 TIGR01484 HAD-SF-IIB HAD-super 70.3 7.5 0.00016 32.0 4.3 41 164-204 161-202 (204)
87 PRK05749 3-deoxy-D-manno-octul 69.8 11 0.00023 34.8 5.6 56 169-225 251-325 (425)
88 PF13692 Glyco_trans_1_4: Glyc 69.6 4.2 9.2E-05 30.6 2.5 66 170-238 24-91 (135)
89 PF12689 Acid_PPase: Acid Phos 69.6 47 0.001 28.7 9.1 100 117-221 52-164 (169)
90 cd04951 GT1_WbdM_like This fam 69.3 15 0.00033 31.2 6.1 54 168-222 207-265 (360)
91 PF00702 Hydrolase: haloacid d 68.2 30 0.00065 27.9 7.3 83 112-200 129-214 (215)
92 TIGR03088 stp2 sugar transfera 68.1 18 0.00039 32.0 6.5 69 169-237 214-291 (374)
93 cd01973 Nitrogenase_VFe_beta_l 68.0 1.3E+02 0.0027 29.5 12.8 76 131-209 309-407 (454)
94 PRK01158 phosphoglycolate phos 67.5 10 0.00022 31.7 4.6 52 165-216 156-208 (230)
95 KOG3107|consensus 67.5 20 0.00043 35.9 7.1 157 6-226 256-412 (468)
96 cd03812 GT1_CapH_like This fam 67.3 20 0.00043 30.8 6.3 56 168-224 211-271 (358)
97 PF02350 Epimerase_2: UDP-N-ac 66.3 23 0.0005 33.0 7.1 80 128-210 10-100 (346)
98 PF12710 HAD: haloacid dehalog 66.0 20 0.00044 28.6 5.8 32 166-197 157-191 (192)
99 TIGR03087 stp1 sugar transfera 65.5 19 0.0004 32.8 6.2 54 169-225 248-303 (397)
100 TIGR01285 nifN nitrogenase mol 63.9 1.5E+02 0.0031 28.8 12.9 139 62-209 243-399 (432)
101 PLN02846 digalactosyldiacylgly 62.5 20 0.00043 35.5 6.1 52 169-221 248-302 (462)
102 PF09949 DUF2183: Uncharacteri 61.9 13 0.00029 29.5 4.0 55 137-192 11-75 (100)
103 cd03813 GT1_like_3 This family 60.3 33 0.00071 32.7 7.0 67 169-236 313-388 (475)
104 TIGR01482 SPP-subfamily Sucros 59.9 17 0.00037 30.2 4.5 53 164-216 147-200 (225)
105 PRK10307 putative glycosyl tra 59.8 12 0.00026 34.1 3.8 54 169-224 249-308 (412)
106 cd01971 Nitrogenase_VnfN_like 59.6 1.7E+02 0.0036 28.1 12.3 24 185-209 374-397 (427)
107 cd03822 GT1_ecORF704_like This 59.4 12 0.00026 31.5 3.6 69 168-237 204-288 (366)
108 TIGR03333 salvage_mtnX 2-hydro 58.8 66 0.0014 27.2 8.0 36 171-206 145-181 (214)
109 smart00577 CPDc catalytic doma 58.6 19 0.00041 29.1 4.5 72 131-204 64-138 (148)
110 PLN02275 transferase, transfer 58.1 19 0.00042 32.8 4.9 47 179-225 259-312 (371)
111 PF06506 PrpR_N: Propionate ca 57.8 11 0.00023 31.6 3.0 51 167-221 111-161 (176)
112 PRK14476 nitrogenase molybdenu 57.7 1.9E+02 0.004 28.3 11.8 136 62-210 243-398 (455)
113 TIGR00655 PurU formyltetrahydr 57.0 22 0.00048 32.8 5.2 44 166-209 93-140 (280)
114 PF14824 Sirohm_synth_M: Siroh 56.9 12 0.00026 24.6 2.4 23 125-147 1-23 (30)
115 TIGR02137 HSK-PSP phosphoserin 56.9 1E+02 0.0022 26.7 8.9 87 115-207 73-170 (203)
116 cd03807 GT1_WbnK_like This fam 56.8 29 0.00063 28.7 5.4 55 169-224 213-273 (365)
117 cd01966 Nitrogenase_NifN_1 Nit 56.6 1E+02 0.0023 29.6 9.8 136 62-210 232-387 (417)
118 cd01968 Nitrogenase_NifE_I Nit 55.8 1.9E+02 0.004 27.4 11.9 115 88-208 237-381 (410)
119 TIGR01686 FkbH FkbH-like domai 55.8 94 0.002 28.4 9.0 80 115-200 36-122 (320)
120 TIGR01456 CECR5 HAD-superfamil 55.5 37 0.00079 31.2 6.3 73 111-190 17-95 (321)
121 cd03819 GT1_WavL_like This fam 55.5 33 0.00071 29.4 5.6 56 168-224 204-268 (355)
122 cd03811 GT1_WabH_like This fam 55.0 43 0.00092 27.4 6.0 52 170-222 210-266 (353)
123 PTZ00225 60S ribosomal protein 53.9 11 0.00024 33.7 2.6 34 179-216 57-90 (214)
124 PF00448 SRP54: SRP54-type pro 53.9 51 0.0011 28.5 6.6 62 160-221 7-77 (196)
125 PRK05749 3-deoxy-D-manno-octul 52.4 1.9E+02 0.0042 26.6 10.5 83 117-210 68-156 (425)
126 PRK14477 bifunctional nitrogen 51.7 3.4E+02 0.0073 29.2 13.8 89 115-209 307-415 (917)
127 TIGR01485 SPP_plant-cyano sucr 51.5 33 0.00072 29.6 5.1 55 163-217 164-220 (249)
128 cd03817 GT1_UGDG_like This fam 51.1 36 0.00077 28.4 5.0 54 168-222 221-281 (374)
129 cd01980 Chlide_reductase_Y Chl 51.0 75 0.0016 30.4 7.8 75 132-209 285-376 (416)
130 PRK10444 UMP phosphatase; Prov 50.2 36 0.00079 30.3 5.3 45 165-209 172-220 (248)
131 cd05844 GT1_like_7 Glycosyltra 50.1 26 0.00057 30.3 4.3 53 171-224 210-269 (367)
132 KOG0091|consensus 50.0 23 0.0005 32.1 3.9 110 68-233 68-189 (213)
133 cd00027 BRCT Breast Cancer Sup 49.1 27 0.00059 22.5 3.3 39 169-207 16-64 (72)
134 PLN02501 digalactosyldiacylgly 48.8 41 0.00088 36.0 6.1 67 170-237 567-637 (794)
135 cd03820 GT1_amsD_like This fam 48.6 58 0.0012 26.7 5.8 52 170-222 199-255 (348)
136 cd03794 GT1_wbuB_like This fam 48.0 44 0.00095 27.8 5.1 55 169-225 240-300 (394)
137 PRK15427 colanic acid biosynth 47.6 35 0.00076 31.9 4.9 55 170-225 243-304 (406)
138 cd03814 GT1_like_2 This family 46.9 28 0.00061 29.2 3.8 53 169-223 217-270 (364)
139 PRK04203 rpl1P 50S ribosomal p 46.3 27 0.00058 31.0 3.8 54 179-235 56-117 (215)
140 PRK05800 cobU adenosylcobinami 46.0 29 0.00063 29.3 3.8 58 159-216 6-69 (170)
141 TIGR00639 PurN phosphoribosylg 45.9 41 0.0009 29.2 4.8 44 166-209 9-58 (190)
142 cd06578 HemD Uroporphyrinogen- 44.5 53 0.0011 27.0 5.1 40 179-220 200-239 (239)
143 PF00072 Response_reg: Respons 44.2 71 0.0015 22.8 5.1 55 165-220 56-111 (112)
144 PF00148 Oxidored_nitro: Nitro 43.9 2.5E+02 0.0055 25.9 9.9 129 74-209 211-367 (398)
145 PRK07774 short chain dehydroge 42.7 1.3E+02 0.0029 24.9 7.2 34 157-190 152-186 (250)
146 cd06578 HemD Uroporphyrinogen- 42.3 60 0.0013 26.7 5.0 43 178-222 75-117 (239)
147 PF00533 BRCT: BRCA1 C Terminu 42.2 29 0.00062 23.8 2.7 30 178-207 39-71 (78)
148 smart00292 BRCT breast cancer 41.6 13 0.00027 24.7 0.8 28 181-208 41-71 (80)
149 TIGR00099 Cof-subfamily Cof su 41.5 53 0.0012 28.2 4.8 52 164-215 186-238 (256)
150 PF10881 DUF2726: Protein of u 41.3 1E+02 0.0022 24.2 6.1 26 196-221 96-123 (126)
151 PRK15484 lipopolysaccharide 1, 41.2 87 0.0019 28.8 6.4 68 169-237 213-296 (380)
152 CHL00076 chlB photochlorophyll 40.9 2E+02 0.0044 28.6 9.3 76 131-208 309-399 (513)
153 cd03798 GT1_wlbH_like This fam 40.6 54 0.0012 27.0 4.5 53 169-222 222-281 (377)
154 cd02970 PRX_like2 Peroxiredoxi 40.5 78 0.0017 24.2 5.2 50 171-222 46-98 (149)
155 TIGR02471 sucr_syn_bact_C sucr 40.4 43 0.00094 28.5 4.1 53 164-216 157-210 (236)
156 PRK13010 purU formyltetrahydro 40.1 55 0.0012 30.4 5.0 45 166-210 102-150 (289)
157 PRK13011 formyltetrahydrofolat 39.9 69 0.0015 29.6 5.5 43 167-209 99-145 (286)
158 cd03801 GT1_YqgM_like This fam 39.8 85 0.0019 25.6 5.5 54 169-223 219-279 (374)
159 PRK05752 uroporphyrinogen-III 39.8 70 0.0015 28.0 5.4 40 180-221 209-248 (255)
160 PLN02871 UDP-sulfoquinovose:DA 39.4 49 0.0011 31.2 4.6 60 166-225 273-337 (465)
161 cd05015 SIS_PGI_1 Phosphogluco 39.2 44 0.00096 27.6 3.8 38 172-209 98-138 (158)
162 cd03808 GT1_cap1E_like This fa 39.1 81 0.0018 25.9 5.3 45 179-223 217-267 (359)
163 COG0637 Predicted phosphatase/ 38.9 2.6E+02 0.0056 24.2 11.9 95 112-209 88-187 (221)
164 PRK08674 bifunctional phosphog 38.5 2.3E+02 0.0049 26.2 8.7 85 126-211 198-293 (337)
165 PRK15490 Vi polysaccharide bio 38.5 67 0.0014 33.2 5.7 55 170-225 419-478 (578)
166 TIGR01862 N2-ase-Ialpha nitrog 38.2 3.8E+02 0.0083 26.0 12.2 117 89-209 271-413 (443)
167 PRK08811 uroporphyrinogen-III 37.6 67 0.0015 29.0 5.0 40 180-221 218-257 (266)
168 PRK08238 hypothetical protein; 37.3 3.5E+02 0.0076 26.9 10.3 95 101-204 63-162 (479)
169 PRK05424 rplA 50S ribosomal pr 37.0 42 0.0009 30.3 3.6 27 178-205 68-94 (230)
170 KOG1099|consensus 36.7 36 0.00078 32.4 3.2 44 148-191 80-124 (294)
171 PF08411 Exonuc_X-T_C: Exonucl 36.2 41 0.00089 30.8 3.5 43 64-115 193-236 (269)
172 cd01974 Nitrogenase_MoFe_beta 35.8 4.1E+02 0.0088 25.6 12.9 121 87-210 257-404 (435)
173 PF08282 Hydrolase_3: haloacid 35.5 64 0.0014 26.2 4.1 53 162-214 182-235 (254)
174 PF02602 HEM4: Uroporphyrinoge 34.4 96 0.0021 26.0 5.2 46 169-216 178-229 (231)
175 TIGR00236 wecB UDP-N-acetylglu 34.3 3.5E+02 0.0075 24.3 9.3 77 128-207 30-116 (365)
176 cd03821 GT1_Bme6_like This fam 34.2 54 0.0012 27.3 3.6 53 169-222 223-284 (375)
177 PRK08642 fabG 3-ketoacyl-(acyl 34.1 2.7E+02 0.0059 23.0 9.6 61 157-217 156-228 (253)
178 PLN02828 formyltetrahydrofolat 34.0 78 0.0017 29.4 4.9 44 166-209 79-131 (268)
179 PRK05717 oxidoreductase; Valid 33.7 2.1E+02 0.0045 24.1 7.1 36 155-190 152-187 (255)
180 KOG1111|consensus 33.4 78 0.0017 31.7 5.0 51 173-225 219-274 (426)
181 PRK14454 ribosomal RNA large s 33.4 91 0.002 29.6 5.4 33 114-146 166-202 (342)
182 KOG0767|consensus 33.3 19 0.00042 34.6 0.9 34 167-205 207-241 (333)
183 TIGR00250 RNAse_H_YqgF RNAse H 33.3 65 0.0014 26.4 3.9 56 154-211 23-93 (130)
184 PF01715 IPPT: IPP transferase 33.2 1.8E+02 0.0039 26.3 7.0 124 108-235 38-186 (253)
185 cd02967 mauD Methylamine utili 33.2 92 0.002 23.0 4.4 34 170-203 42-77 (114)
186 TIGR01533 lipo_e_P4 5'-nucleot 33.1 1.8E+02 0.0039 26.8 7.1 79 111-194 119-201 (266)
187 TIGR02329 propionate_PrpR prop 33.0 58 0.0013 32.7 4.2 49 169-222 136-185 (526)
188 PLN02331 phosphoribosylglycina 33.0 52 0.0011 29.2 3.5 45 166-210 8-58 (207)
189 PF05762 VWA_CoxE: VWA domain 33.0 1.1E+02 0.0024 26.7 5.4 71 116-191 78-160 (222)
190 TIGR01861 ANFD nitrogenase iro 32.8 5.3E+02 0.012 26.0 11.1 128 73-207 267-422 (513)
191 PRK14477 bifunctional nitrogen 32.7 6.6E+02 0.014 27.1 13.2 138 62-211 719-876 (917)
192 TIGR01169 rplA_bact ribosomal 32.5 54 0.0012 29.5 3.6 27 178-205 67-93 (227)
193 KOG1089|consensus 32.5 1.3E+02 0.0028 31.3 6.6 40 108-147 319-369 (573)
194 PRK10530 pyridoxal phosphate ( 32.5 83 0.0018 26.9 4.6 50 164-213 197-247 (272)
195 cd03805 GT1_ALG2_like This fam 32.5 84 0.0018 27.7 4.7 55 168-222 230-302 (392)
196 KOG2599|consensus 32.4 1.1E+02 0.0023 29.6 5.6 88 51-139 83-192 (308)
197 cd03823 GT1_ExpE7_like This fa 32.1 79 0.0017 26.4 4.3 58 180-237 219-282 (359)
198 COG0788 PurU Formyltetrahydrof 31.9 61 0.0013 30.9 3.9 45 169-213 102-150 (287)
199 PRK09134 short chain dehydroge 31.8 1.8E+02 0.004 24.5 6.5 36 155-190 154-189 (258)
200 PF09744 Jnk-SapK_ap_N: JNK_SA 31.5 18 0.00039 31.2 0.3 17 163-181 6-22 (158)
201 cd03799 GT1_amsK_like This is 31.4 71 0.0015 27.2 3.9 54 169-223 199-259 (355)
202 PF02283 CobU: Cobinamide kina 31.3 50 0.0011 28.1 3.0 59 159-217 3-67 (167)
203 PF13911 AhpC-TSA_2: AhpC/TSA 30.8 1E+02 0.0023 23.5 4.5 48 175-224 6-56 (115)
204 cd01977 Nitrogenase_VFe_alpha 30.6 4.8E+02 0.01 24.8 10.1 114 89-208 242-383 (415)
205 TIGR02918 accessory Sec system 30.4 1.6E+02 0.0034 29.1 6.6 67 169-237 339-411 (500)
206 cd04962 GT1_like_5 This family 30.0 1.4E+02 0.003 25.9 5.6 51 171-223 219-274 (371)
207 PTZ00175 diphthine synthase; P 29.4 1.3E+02 0.0029 27.6 5.6 43 166-208 62-111 (270)
208 cd02008 TPP_IOR_alpha Thiamine 29.4 1.5E+02 0.0031 24.7 5.4 32 190-221 130-161 (178)
209 COG0376 KatG Catalase (peroxid 29.1 54 0.0012 34.4 3.3 40 169-208 514-560 (730)
210 cd03792 GT1_Trehalose_phosphor 28.9 1.3E+02 0.0029 26.8 5.4 55 168-223 209-277 (372)
211 PRK06027 purU formyltetrahydro 28.8 1.2E+02 0.0026 28.0 5.2 44 167-210 99-146 (286)
212 PRK15179 Vi polysaccharide bio 28.6 1.2E+02 0.0026 31.6 5.7 65 170-235 538-608 (694)
213 cd02012 TPP_TK Thiamine pyroph 28.5 2.2E+02 0.0048 25.1 6.7 73 129-203 50-157 (255)
214 TIGR01460 HAD-SF-IIA Haloacid 28.5 1.7E+02 0.0038 25.4 5.9 85 112-203 16-102 (236)
215 PRK01372 ddl D-alanine--D-alan 28.4 2.2E+02 0.0047 25.1 6.6 39 166-205 98-137 (304)
216 PRK14462 ribosomal RNA large s 28.2 1.5E+02 0.0032 28.6 5.8 81 113-195 177-279 (356)
217 COG4850 Uncharacterized conser 28.2 97 0.0021 30.6 4.6 75 128-203 215-302 (373)
218 TIGR01459 HAD-SF-IIA-hyp4 HAD- 28.0 2.6E+02 0.0056 24.2 6.9 75 114-191 28-105 (242)
219 PF00534 Glycos_transf_1: Glyc 28.0 1.7E+02 0.0036 22.8 5.2 56 169-224 35-97 (172)
220 smart00775 LNS2 LNS2 domain. T 28.0 86 0.0019 26.0 3.8 66 130-207 78-145 (157)
221 CHL00073 chlN photochlorophyll 27.7 1.2E+02 0.0026 30.3 5.3 41 169-209 87-136 (457)
222 cd04121 Rab40 Rab40 subfamily. 27.6 86 0.0019 26.4 3.8 64 154-220 86-162 (189)
223 TIGR01170 rplA_mito ribosomal 27.3 89 0.0019 26.4 3.8 27 178-204 49-75 (141)
224 PRK02910 light-independent pro 27.2 2.2E+02 0.0048 28.2 7.1 75 131-209 297-388 (519)
225 PRK14098 glycogen synthase; Pr 27.1 1.1E+02 0.0023 29.9 4.8 45 180-224 335-386 (489)
226 cd03816 GT1_ALG1_like This fam 26.9 74 0.0016 29.7 3.5 57 168-224 251-319 (415)
227 PRK03957 V-type ATP synthase s 26.8 2.4E+02 0.0052 22.1 5.9 68 113-181 30-97 (100)
228 PF00145 DNA_methylase: C-5 cy 26.7 1.1E+02 0.0023 26.5 4.3 42 137-178 89-130 (335)
229 cd03825 GT1_wcfI_like This fam 26.7 62 0.0013 27.7 2.8 51 170-222 214-267 (365)
230 COG0695 GrxC Glutaredoxin and 26.6 2.7E+02 0.0059 20.6 6.0 50 172-221 18-78 (80)
231 PRK05765 precorrin-3B C17-meth 26.3 1.3E+02 0.0027 26.8 4.7 47 172-219 63-117 (246)
232 cd07610 FCH_F-BAR The Extended 26.0 1.2E+02 0.0026 24.9 4.3 68 55-122 7-84 (191)
233 TIGR01278 DPOR_BchB light-inde 26.0 1.9E+02 0.004 28.7 6.3 78 131-209 299-390 (511)
234 cd04175 Rap1 Rap1 subgroup. T 25.8 1.5E+02 0.0031 23.1 4.5 52 169-220 93-158 (164)
235 cd01338 MDH_choloroplast_like 25.7 1.8E+02 0.0039 27.2 5.9 75 115-192 107-187 (322)
236 PF15152 Kisspeptin: Kisspepti 25.6 31 0.00068 27.2 0.7 14 16-29 62-75 (78)
237 PRK15376 pathogenicity island 25.3 42 0.0009 34.7 1.7 55 19-104 500-560 (670)
238 cd03466 Nitrogenase_NifN_2 Nit 25.2 6.2E+02 0.013 24.3 11.4 74 131-210 304-399 (429)
239 PF07728 AAA_5: AAA domain (dy 25.2 1E+02 0.0022 23.8 3.6 39 159-197 4-42 (139)
240 PRK05928 hemD uroporphyrinogen 24.9 1.4E+02 0.0031 24.9 4.6 39 181-221 207-245 (249)
241 cd00568 TPP_enzymes Thiamine p 24.9 1.2E+02 0.0026 24.0 4.0 33 180-212 64-101 (168)
242 cd01965 Nitrogenase_MoFe_beta_ 24.7 6.2E+02 0.013 24.1 12.7 140 62-209 231-397 (428)
243 PF10766 DUF2592: Protein of u 24.7 24 0.00052 24.8 -0.1 15 141-155 17-31 (41)
244 PRK10513 sugar phosphate phosp 24.6 1.5E+02 0.0033 25.5 4.8 53 164-216 194-247 (270)
245 cd04949 GT1_gtfA_like This fam 24.1 2.5E+02 0.0054 24.8 6.1 54 170-224 225-283 (372)
246 TIGR02400 trehalose_OtsA alpha 24.1 1.8E+02 0.004 28.3 5.8 59 167-225 277-361 (456)
247 CHL00129 rpl1 ribosomal protei 24.1 94 0.002 28.2 3.6 27 178-205 68-94 (229)
248 PRK03868 glucose-6-phosphate i 24.0 1.2E+02 0.0026 29.6 4.5 48 161-208 117-173 (410)
249 cd03806 GT1_ALG11_like This fa 23.5 1.8E+02 0.004 27.3 5.5 56 168-223 256-328 (419)
250 TIGR03568 NeuC_NnaA UDP-N-acet 23.4 4.7E+02 0.01 24.4 8.1 81 128-209 30-125 (365)
251 PRK06063 DNA polymerase III su 23.4 64 0.0014 30.0 2.4 44 170-216 250-304 (313)
252 cd00674 LysRS_core_class_I cat 23.3 2.5E+02 0.0054 27.1 6.4 77 130-220 20-109 (353)
253 PRK08114 cystathionine beta-ly 23.1 6.8E+02 0.015 24.2 9.3 29 157-189 108-136 (395)
254 PRK05993 short chain dehydroge 23.0 4.7E+02 0.01 22.5 7.6 80 99-190 99-179 (277)
255 cd00496 PheRS_alpha_core Pheny 23.0 67 0.0014 27.9 2.3 49 136-190 64-114 (218)
256 PF13905 Thioredoxin_8: Thiore 22.9 2.1E+02 0.0046 20.4 4.6 45 168-212 20-69 (95)
257 PRK14464 ribosomal RNA large s 22.8 2.6E+02 0.0056 26.9 6.4 80 113-194 158-260 (344)
258 PF08734 GYD: GYD domain; Int 22.7 86 0.0019 24.2 2.7 33 167-199 21-63 (91)
259 COG5275 BRCT domain type II [G 22.6 1.2E+02 0.0025 28.7 3.9 25 181-205 194-220 (276)
260 PRK06483 dihydromonapterin red 22.4 4.5E+02 0.0098 21.7 9.8 36 155-190 143-178 (236)
261 PTZ00029 60S ribosomal protein 22.2 1.1E+02 0.0025 27.1 3.7 34 179-216 59-92 (216)
262 PRK06398 aldose dehydrogenase; 22.1 5E+02 0.011 22.1 8.0 37 155-191 139-175 (258)
263 PRK09288 purT phosphoribosylgl 22.0 3E+02 0.0066 25.2 6.5 85 130-219 78-180 (395)
264 PRK10976 putative hydrolase; P 22.0 1.6E+02 0.0034 25.4 4.4 53 164-216 188-241 (266)
265 COG5211 SSU72 RNA polymerase I 22.0 1.6E+02 0.0035 26.6 4.5 62 167-240 113-183 (197)
266 cd03073 PDI_b'_ERp72_ERp57 PDI 21.9 2E+02 0.0043 22.7 4.7 44 168-212 37-88 (111)
267 cd02007 TPP_DXS Thiamine pyrop 21.9 1.3E+02 0.0027 25.9 3.8 10 130-139 69-78 (195)
268 PRK10671 copA copper exporting 21.7 8.6E+02 0.019 25.5 10.3 96 115-223 655-767 (834)
269 KOG3798|consensus 21.7 56 0.0012 31.5 1.7 32 159-191 233-265 (343)
270 cd01861 Rab6 Rab6 subfamily. 21.7 3.1E+02 0.0066 21.0 5.6 51 170-220 94-157 (161)
271 PF12608 DUF3773: Protein of u 21.5 63 0.0014 26.5 1.7 27 132-158 30-64 (97)
272 PRK14455 ribosomal RNA large s 21.4 2E+02 0.0043 27.4 5.3 34 113-146 176-213 (356)
273 PF09419 PGP_phosphatase: Mito 21.3 91 0.002 27.1 2.8 38 165-202 114-158 (168)
274 PRK09189 uroporphyrinogen-III 21.2 1.1E+02 0.0023 26.4 3.2 40 180-221 199-238 (240)
275 TIGR01068 thioredoxin thioredo 21.1 1.2E+02 0.0026 21.3 3.0 35 168-203 33-67 (101)
276 KOG1689|consensus 21.1 58 0.0013 29.6 1.6 23 67-89 52-76 (221)
277 PF01248 Ribosomal_L7Ae: Ribos 21.0 81 0.0018 23.5 2.2 54 165-224 18-78 (95)
278 cd00544 CobU Adenosylcobinamid 21.0 1.7E+02 0.0036 24.8 4.3 40 159-198 4-43 (169)
279 PRK09814 beta-1,6-galactofuran 20.7 49 0.0011 29.9 1.1 39 179-219 188-226 (333)
280 PRK09437 bcp thioredoxin-depen 20.4 1.7E+02 0.0037 23.1 4.1 38 171-208 53-93 (154)
281 COG0465 HflB ATP-dependent Zn 20.4 84 0.0018 32.6 2.8 37 72-108 229-284 (596)
282 COG0626 MetC Cystathionine bet 20.3 3.5E+02 0.0076 26.6 6.8 61 156-220 108-175 (396)
283 PF02222 ATP-grasp: ATP-grasp 20.3 1.7E+02 0.0037 25.1 4.3 50 180-229 7-70 (172)
284 PRK09496 trkA potassium transp 20.3 3.1E+02 0.0067 25.5 6.3 50 165-214 211-267 (453)
285 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 20.3 2E+02 0.0044 22.3 4.4 42 179-220 105-159 (166)
286 KOG3086|consensus 20.2 1.7E+02 0.0037 28.0 4.5 50 138-189 134-187 (296)
287 TIGR02014 BchZ chlorophyllide 20.1 4.2E+02 0.009 26.4 7.4 78 128-210 280-361 (468)
288 COG4229 Predicted enolase-phos 20.1 1.8E+02 0.0039 26.9 4.5 77 128-206 119-202 (229)
289 TIGR01650 PD_CobS cobaltochela 20.0 63 0.0014 30.9 1.7 20 196-215 84-103 (327)
No 1
>KOG3107|consensus
Probab=100.00 E-value=3.9e-99 Score=709.04 Aligned_cols=213 Identities=69% Similarity=1.192 Sum_probs=209.7
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccchhhhHHHHHHHHHHHHHHHhh
Q psy8471 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGGVDWMRKLAFRYRKIKDTYNN 80 (242)
Q Consensus 1 ~cdqvhiddvs~dDnGqDLs~y~f~~dgf~~~~~~~~~~~~~~~~~~~~~lc~~~~vrggvdwmRKLAfRyrrIke~Y~~ 80 (242)
||||||||||++||||||||+|+|.+||||++++. .+++|+.++||||||||||||||||++||+|+.
T Consensus 256 ecdq~~vDdvs~dDngqdLs~y~f~~d~fsa~~~~------------~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~ 323 (468)
T KOG3107|consen 256 ECDQVHVDDVSSDDNGQDLSTYNFVTDGFSAFTAF------------SANLCLKTGVRGGVDWMRKLAFRYREVKEIYNT 323 (468)
T ss_pred hhcccccccccccCCcccccceeeccCCCcCcCcc------------ccccccccccchhhhhhhccchhhHHHHHHHHH
Confidence 79999999999999999999999999999997762 569999999999999999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccc
Q psy8471 81 YRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIY 160 (242)
Q Consensus 81 yk~~v~gLL~~~kr~~w~~lr~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIY 160 (242)
|++||+++++|.+|+.|.+||+|+|..||+||++|+|++++|++|+||||||||||||||+||||||||||++|||||||
T Consensus 324 y~nnv~~l~~p~~~eaw~~lr~~~ev~tdsw~tsaLka~s~i~sr~ncvnVlvTttqLipalaKvLL~gLg~~fpiENIY 403 (468)
T KOG3107|consen 324 YKNNVGGLTGPNKREAWLQLRAEIEVLTDSWLTSALKALSLISSRKNCVNVLVTTTQLIPALAKVLLYGLGSSFPIENIY 403 (468)
T ss_pred HHhhhhcccCchhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhcccceeEEEEeccchhHHHHHHHHHhcCCcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhchh
Q psy8471 161 SSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 161 Sa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l 225 (242)
|++|||||||||||++||||||+|||||||+|||+|||+||||||||++|+||.+||+|||++||
T Consensus 404 Sa~kiGKescFerI~~RFg~K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~Dl~~l~~aL~~~~l 468 (468)
T KOG3107|consen 404 SATKIGKESCFERIQSRFGRKVVYVVIGDGVEEEQAAKALNMPFWRISSHSDLDALYSALELEYL 468 (468)
T ss_pred hhhhccHHHHHHHHHHHhCCceEEEEecCcHHHHHHHHhhCCceEeeccCccHHHHhhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 2
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=1.2e-96 Score=661.81 Aligned_cols=196 Identities=46% Similarity=0.762 Sum_probs=190.3
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccchhhhHHHHHHHHHHHHHHHhh
Q psy8471 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGGVDWMRKLAFRYRKIKDTYNN 80 (242)
Q Consensus 1 ~cdqvhiddvs~dDnGqDLs~y~f~~dgf~~~~~~~~~~~~~~~~~~~~~lc~~~~vrggvdwmRKLAfRyrrIke~Y~~ 80 (242)
+|||||||||++||||||||+|||.+|||++|.+ + +| +||||||||+|+|+|++
T Consensus 63 e~dq~~lddv~~~DdG~DLs~Y~F~~D~f~~p~~-------------~--~~-----------~rKLAyR~R~I~e~Y~~ 116 (274)
T TIGR01658 63 ECNEPFLDDVRSYDDGKDLSRYEFKTDGFSTPTD-------------D--LN-----------KRKLAYRHRAVAEIYEK 116 (274)
T ss_pred hcCccchhhhhhcccccCccccccccccCCCCcc-------------c--hh-----------hhHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999877 4 44 69999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHhhhhhhHHHHHHHH---------------HHHHhhCCcceEEEEcCCcchHHHHHH
Q psy8471 81 YRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKC---------------LNIINSRSTCTNVIVTCTQLVPALAKV 145 (242)
Q Consensus 81 yk~~v~gLL~~~kr~~w~~lr~e~e~~Td~WLs~A~k~---------------L~~i~sR~~~vNVLVTttqLVPaLAK~ 145 (242)
| |++||+|+++++|++||+|||.+||+|||+|+|| +++|++|++||||||||||||||||||
T Consensus 117 ~---v~~lL~~~~~~~w~~L~~e~d~~TD~WLs~A~k~l~~~~~~~~~~~~~~~~~i~sr~~~vNvLVTs~qLVPaLaKc 193 (274)
T TIGR01658 117 G---LGPLLDPESMEALDELYSETDVYTDRWLSSALKFLEQCSCVEESSDGTSLIEISSRDNCINVLVTSGQLIPSLAKC 193 (274)
T ss_pred h---hhhccCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccccccccchhccccCCceeEEEEEcCccHHHHHHH
Confidence 5 9999999999999999999999999999999999 888899999999999999999999999
Q ss_pred HHhhcCCccccCccccccccChhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhch
Q psy8471 146 LLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 146 LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~ 224 (242)
|||+||++|||||||||+|+|||||||||++|||+ ||+|||||||+|||+|||+||||||||++|||+.+||+||++++
T Consensus 194 LLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~Dl~~l~~aL~l~~ 273 (274)
T TIGR01658 194 LLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPDSSHRFPGLTLKT 273 (274)
T ss_pred HHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecCCCHHHhCccCCcCC
Confidence 99999999999999999999999999999999986 99999999999999999999999999999999999999999998
Q ss_pred h
Q psy8471 225 L 225 (242)
Q Consensus 225 l 225 (242)
|
T Consensus 274 l 274 (274)
T TIGR01658 274 L 274 (274)
T ss_pred C
Confidence 6
No 3
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.55 E-value=0.00078 Score=51.76 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEEEcC
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVVIGD 189 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvvIGD 189 (242)
+..+|+.+.++ +.--++||++.-.-.-.++=-+++..+|+ .|+++...| +...|+++.+++| +.-..++|||
T Consensus 82 ~~~~L~~l~~~-~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD 158 (176)
T PF13419_consen 82 VRELLERLKAK-GIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGD 158 (176)
T ss_dssp HHHHHHHHHHT-TSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEES
T ss_pred hhhhhhhcccc-cceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeC
Confidence 34555555433 66667888886322223333356665555 888887766 3699999999997 6688999999
Q ss_pred CHHHHHHHHHcCCceeEe
Q psy8471 190 GQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 190 G~eEe~AAk~~~~PFwrI 207 (242)
....-++|++.||+..-|
T Consensus 159 ~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 159 SPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHcCCeEEeC
Confidence 999999999999997654
No 4
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.49 E-value=0.0079 Score=47.70 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHH-hhcCCccccCcccccccc--Ch--hHHHHHHHHhhCC-CcEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLL-FGLGDIFQVENIYSSTKI--GK--ESCFERIGTRFGR-KVTYVV 186 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LL-ygL~~~fpiENIYSa~ki--GK--esCFerI~~RFG~-k~tyvv 186 (242)
.-+..+|+.+.++ ++.-++||++.-.. .+++. ++|..+| +.|+++..+ +| ..+|+++.+++|. .-.-++
T Consensus 88 ~g~~~~l~~l~~~-g~~~~i~Tn~~~~~--~~~~~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 88 PGVEPLLEALRAR-GKKLALLTNSPRDH--AVLVQELGLRDLF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred cCHHHHHHHHHHC-CCeEEEEeCCchHH--HHHHHhcCCHHHC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 4456777777655 44457777776544 55555 7887776 556665444 35 6899999999984 467789
Q ss_pred EcCCHHHHHHHHHcCCceeE
Q psy8471 187 IGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwr 206 (242)
|||....-+|||+.||+++-
T Consensus 163 vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 163 VDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred EcCCHHHHHHHHHcCCEEEe
Confidence 99999999999999998864
No 5
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.40 E-value=0.0023 Score=53.16 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-H-hhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEE
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-L-FGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVV 186 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-L-ygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvv 186 (242)
-+..+|+.+.++ +.--+++|++.-. ...+++ . .++..+| +.||++-.+| +...|+.+.+++| +.-.-++
T Consensus 88 g~~e~L~~l~~~-g~~~~i~Sn~~~~-~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 88 EVIAIMHKLREQ-GHRVVVLSNTNRL-HTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred HHHHHHHHHHhC-CCcEEEEcCCchh-hHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 345555555554 4566888887633 222222 1 2566655 6899998876 4789999999998 4456688
Q ss_pred EcCCHHHHHHHHHcCCceeEecccccHHHHHHh
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNA 219 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~A 219 (242)
|||...--+|||++||.++.+....++.+.-.+
T Consensus 164 vgD~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 164 FDDNADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred eCCCHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 999988888999999999999998888766544
No 6
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.36 E-value=0.0016 Score=53.89 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVVI 187 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvvI 187 (242)
.-+...|+.+.++ +..-+++|++.-.-...++=-+++..+|. .||++-..+ |..+|+++.+++| +.-.-++|
T Consensus 78 ~g~~~~L~~L~~~-g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 78 PGVPELLAELRAD-GVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMV 154 (205)
T ss_pred CCHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChHHHHHHHHHcCCChhheEEE
Confidence 3456666666655 56778888876555555555677877775 578775543 6799999999998 45667999
Q ss_pred cCCHHHHHHHHHcCCceeEec
Q psy8471 188 GDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 188 GDG~eEe~AAk~~~~PFwrIs 208 (242)
||+...-+|||+.||+++-+.
T Consensus 155 gD~~~Di~aA~~~Gi~~i~~~ 175 (205)
T TIGR01454 155 GDAVTDLASARAAGTATVAAL 175 (205)
T ss_pred cCCHHHHHHHHHcCCeEEEEE
Confidence 999888889999999998775
No 7
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.35 E-value=0.0015 Score=54.13 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvIG 188 (242)
-+..+|+.+..+ +..-++||++.-.....++--++|..+| +.|+++..+| | ..+|+.+.+++| ..-.-|+||
T Consensus 98 g~~~~L~~L~~~-g~~~~i~Tn~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ig 174 (221)
T TIGR02253 98 GVRDTLMELRES-GYRLGIITDGLPVKQWEKLERLGVRDFF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVG 174 (221)
T ss_pred CHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHhCChHHhc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEEC
Confidence 345666666544 5667889998755455565567888888 6799887776 3 479999999998 446789999
Q ss_pred CCH-HHHHHHHHcCCceeEecccc
Q psy8471 189 DGQ-DEEAAAKQNNFPFWRVSSHS 211 (242)
Q Consensus 189 DG~-eEe~AAk~~~~PFwrIssh~ 211 (242)
|.. -.-++||+.||.++-+....
T Consensus 175 Ds~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 175 DRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred CChHHHHHHHHHCCCEEEEECCCC
Confidence 997 48899999999999887643
No 8
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.23 E-value=0.0036 Score=51.55 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhh-C-CCcEEEEE
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRF-G-RKVTYVVI 187 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RF-G-~k~tyvvI 187 (242)
-+...|+.+.++ ..-++||++.---.-.++=-++++.+| +.||++..+| +...|+...+++ | +.-.=|+|
T Consensus 101 g~~~~L~~l~~~--~~~~i~Sn~~~~~~~~~l~~~~l~~~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~i 176 (224)
T TIGR02254 101 GAFELMENLQQK--FRLYIVTNGVRETQYKRLRKSGLFPFF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMI 176 (224)
T ss_pred cHHHHHHHHHhc--CcEEEEeCCchHHHHHHHHHCCcHhhc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEE
Confidence 345566666554 566777776532222333346777777 6899988765 456999999999 8 44568999
Q ss_pred cCCH-HHHHHHHHcCCceeEecc
Q psy8471 188 GDGQ-DEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 188 GDG~-eEe~AAk~~~~PFwrIss 209 (242)
||.. ---+||++.||++.-++.
T Consensus 177 gD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 177 GDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred CCCcHHHHHHHHHCCCcEEEECC
Confidence 9997 488999999999988864
No 9
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.10 E-value=0.0076 Score=50.19 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcC--CccccCcccccccc--C--hhHHHHHHHHhhCC--CcEEEE
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLG--DIFQVENIYSSTKI--G--KESCFERIGTRFGR--KVTYVV 186 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~--~~fpiENIYSa~ki--G--KesCFerI~~RFG~--k~tyvv 186 (242)
+...|..+.++ +..-.+||++.---.-.++=-+++. .+|+ -||++..+ + +...|++..+|+|- .-.-++
T Consensus 92 ~~~~L~~L~~~-g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 168 (220)
T TIGR03351 92 AEEAFRSLRSS-GIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAV 168 (220)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEE
Confidence 45566666655 5667888888754444444446776 7785 48887664 3 45999999999985 368999
Q ss_pred EcCCHHHHHHHHHcCCce-eEecc-cccHHHH
Q psy8471 187 IGDGQDEEAAAKQNNFPF-WRVSS-HSDLAAL 216 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PF-wrIss-h~Dl~~L 216 (242)
|||+.-.-+|||+.+|++ +-+.. +.+...+
T Consensus 169 igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~ 200 (220)
T TIGR03351 169 AGDTPNDLEAGINAGAGAVVGVLTGAHDAEEL 200 (220)
T ss_pred eCCCHHHHHHHHHCCCCeEEEEecCCCcHHHH
Confidence 999999999999999999 77755 4444444
No 10
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.07 E-value=0.0058 Score=50.96 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVVI 187 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvvI 187 (242)
.-+..+|+.+.++ +..-+++|+..---.-.++=-+|+..+| +.|+++-.++ |...|+++.+++| ..-..++|
T Consensus 85 ~g~~~~l~~L~~~-g~~~~i~S~~~~~~~~~~l~~~gl~~~f--~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 85 ETVYETLKTLKKQ-GYKLGIVTTKMRDTVEMGLKLTGLDEFF--DVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred cCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCChhce--eEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 3456666666655 4556777887643333444457888887 4688765543 5789999999997 44678899
Q ss_pred cCCHHHHHHHHHcCCceeEeccc
Q psy8471 188 GDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 188 GDG~eEe~AAk~~~~PFwrIssh 210 (242)
||...--+||++.|++++-|...
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g 184 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWT 184 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCC
Confidence 99999999999999999988654
No 11
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.03 E-value=0.0032 Score=50.51 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC-CcEEEE
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR-KVTYVV 186 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~-k~tyvv 186 (242)
..-+..+|+.+.++ +..-.++|++.-.+. ++--++|..+| +.++++..++ +..+|+.+.+|+|- ...-|+
T Consensus 89 ~pg~~~~L~~L~~~-g~~~~i~s~~~~~~~--~l~~~~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 89 LPGIKNLLDDLKKN-NIKIALASASKNAPT--VLEKLGLIDYF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred CccHHHHHHHHHHC-CCeEEEEeCCccHHH--HHHhcCcHhhC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 34556677777665 344466776644333 33345776766 5677665543 67899999999983 467889
Q ss_pred EcCCHHHHHHHHHcCCceeEe
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrI 207 (242)
|||...--+|||+.||++.-|
T Consensus 164 vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred EecCHHHHHHHHHcCCEEEec
Confidence 999999999999999998754
No 12
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.03 E-value=0.0056 Score=54.54 Aligned_cols=124 Identities=11% Similarity=0.101 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVI 187 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvI 187 (242)
.-+..+|+.+.++ ...-.|||+..-.-.-.++=-+++.++|.. |+++..++ | ..+|.++.+|+| +.-.-++|
T Consensus 112 pg~~e~L~~L~~~-g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~--ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 112 PGSREFVQALKKH-EIPIAVASTRPRRYLERAIEAVGMEGFFSV--VLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred CCHHHHHHHHHHC-CCEEEEEeCcCHHHHHHHHHHcCCHhhCcE--EEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 4456677777655 566778888876555555555788888764 66665543 4 579999999998 45667889
Q ss_pred cCCHHHHHHHHHcCCceeEecccccHHHHHHhh--hhchhhhhhchhhhhhhhh
Q psy8471 188 GDGQDEEAAAKQNNFPFWRVSSHSDLAALYNAL--DMGFLIVEEGLVGTLAEWQ 239 (242)
Q Consensus 188 GDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL--~~~~l~~~~~~~~~~~~~~ 239 (242)
||...--+|||+.||+++-+....+...+..|- --.+-.+....++++++..
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi~~~~el~~~~~~~~~~~~ 242 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVVRRLDDLSVVDLKNLSDLD 242 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEeCCHHHHHHHHHhhhhccC
Confidence 999999999999999998886433333332210 0111244555556665543
No 13
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.01 E-value=0.0042 Score=51.54 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchH--HHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhCC-CcEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVP--ALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFGR-KVTYV 185 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVP--aLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG~-k~tyv 185 (242)
..+..+|+.+.++ +..-+++|++.-.. .....+-+++..+| +-||++..+| | ...|+.+.+++|- .-.-+
T Consensus 97 ~~~~~~L~~L~~~-g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l 173 (211)
T TIGR02247 97 PSMMAAIKTLRAK-GFKTACITNNFPTDHSAEEALLPGDIMALF--DAVVESCLEGLRKPDPRIYQLMLERLGVAPEECV 173 (211)
T ss_pred hhHHHHHHHHHHC-CCeEEEEeCCCCccchhhhHhhhhhhHhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 3456666666554 56667888875433 22223335666776 5677776654 5 5699999999983 34455
Q ss_pred EEcCCHHHHHHHHHcCCceeEecccccHHHHHHhh
Q psy8471 186 VIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNAL 220 (242)
Q Consensus 186 vIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL 220 (242)
+|||....-+||++.||+++.+....++.+...++
T Consensus 174 ~i~D~~~di~aA~~aG~~~i~v~~~~~~~~~l~~~ 208 (211)
T TIGR02247 174 FLDDLGSNLKPAAALGITTIKVSDEEQAIHDLEKA 208 (211)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCHHHHHHHHHHH
Confidence 56999999999999999999998877666555544
No 14
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.97 E-value=0.005 Score=52.92 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvIG 188 (242)
-+..+|+.+.++ ...-.++|++.-.-...++=-++|..+|. .|+++..+| | ..+|+++.+|+| +.-.-++||
T Consensus 97 g~~e~L~~Lk~~-g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ig 173 (224)
T PRK14988 97 DTVPFLEALKAS-GKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFID 173 (224)
T ss_pred CHHHHHHHHHhC-CCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEc
Confidence 345666666665 56678899987655555655578888874 688777664 5 579999999998 456788999
Q ss_pred CCHHHHHHHHHcCCce-eEeccc
Q psy8471 189 DGQDEEAAAKQNNFPF-WRVSSH 210 (242)
Q Consensus 189 DG~eEe~AAk~~~~PF-wrIssh 210 (242)
|...--+|||..||++ |-|...
T Consensus 174 Ds~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 174 DSEPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred CCHHHHHHHHHcCCeEEEEEeCC
Confidence 9999999999999995 656543
No 15
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.93 E-value=0.0046 Score=50.41 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=59.5
Q ss_pred eEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--------hhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHH
Q psy8471 129 TNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--------KESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQ 199 (242)
Q Consensus 129 vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--------KesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~ 199 (242)
..+++|++.....-.++=-+|+..+|. .||++...| +...|+++.+++|.+ -.-++|||....-+|||+
T Consensus 99 ~~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~ 176 (184)
T TIGR01993 99 RKIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAIFFDDSARNIAAAKA 176 (184)
T ss_pred CEEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceEEEeCCHHHHHHHHH
Confidence 468899988766666666667777664 688876654 456999999999844 567899999988999999
Q ss_pred cCCceeE
Q psy8471 200 NNFPFWR 206 (242)
Q Consensus 200 ~~~PFwr 206 (242)
.||++.-
T Consensus 177 ~G~~~i~ 183 (184)
T TIGR01993 177 LGMKTVL 183 (184)
T ss_pred cCCEEee
Confidence 9998753
No 16
>PRK09449 dUMP phosphatase; Provisional
Probab=96.91 E-value=0.017 Score=48.21 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CC-cEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RK-VTYVV 186 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k-~tyvv 186 (242)
.-+...|+.+.+ +..=.++|++.---.-.++=-++|..+| +-|+++..+| +...|+.+.+++| .. -.-++
T Consensus 98 ~g~~~~L~~L~~--~~~~~i~Tn~~~~~~~~~l~~~~l~~~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 98 PGAVELLNALRG--KVKMGIITNGFTELQQVRLERTGLRDYF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccHHHHHHHHHh--CCeEEEEeCCcHHHHHHHHHhCChHHHc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 445667777763 3556678888754444555567777777 5688887664 4569999999998 33 57899
Q ss_pred EcCCHH-HHHHHHHcCCceeEecc
Q psy8471 187 IGDGQD-EEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 187 IGDG~e-Ee~AAk~~~~PFwrIss 209 (242)
|||..+ --+|||+.||.++-+..
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECC
Confidence 999975 78899999999988864
No 17
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.85 E-value=0.0077 Score=49.58 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccc--cCcccc-ccccChhHHHHHHHHhhCCCcEEEEEc
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQ--VENIYS-STKIGKESCFERIGTRFGRKVTYVVIG 188 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fp--iENIYS-a~kiGKesCFerI~~RFG~k~tyvvIG 188 (242)
..-+...|+.+.++ .. -+++|++.--+...+.-.++|..+|+ ++-|++ ....+|...|+.+.+++| .-..|+||
T Consensus 76 ~pG~~e~L~~L~~~-~~-~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~-~~~~v~vg 152 (197)
T PHA02597 76 YDDALDVINKLKED-YD-FVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG-DRVVCFVD 152 (197)
T ss_pred CCCHHHHHHHHHhc-CC-EEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC-CCcEEEeC
Confidence 33456777777665 33 46778766554433334556666654 134433 233568999999999999 45588999
Q ss_pred CCHHHHHHHHHc--CCceeEeccccc
Q psy8471 189 DGQDEEAAAKQN--NFPFWRVSSHSD 212 (242)
Q Consensus 189 DG~eEe~AAk~~--~~PFwrIssh~D 212 (242)
|...--+||++. +|++.-++.+.+
T Consensus 153 Ds~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 153 DLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred CCHHHHHHHHHHHcCCcEEEecchhh
Confidence 999999999998 999999977653
No 18
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.84 E-value=0.01 Score=48.81 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC-CcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR-KVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~-k~tyvvIG 188 (242)
-+..+|+.+.++ +..-+++|++.---.-.++=-+||..+| +-|+++-.+| +...|+.+.+++|- .-.-++||
T Consensus 96 ~~~~~L~~L~~~-g~~~~i~Sn~~~~~~~~~l~~~gl~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vg 172 (198)
T TIGR01428 96 DVPAGLRALKER-GYRLAILSNGSPAMLKSLVKHAGLDDPF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVA 172 (198)
T ss_pred CHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHCCChhhh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEe
Confidence 345566655544 4556778877643333333335666666 5688887776 36799999999984 45578899
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIss 209 (242)
|....-+||++.||+.+-|.-
T Consensus 173 D~~~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 173 SNPWDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred CCHHHHHHHHHCCCcEEEecC
Confidence 999888999999999988764
No 19
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.79 E-value=0.018 Score=47.55 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC-CcEE
Q psy8471 110 NWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR-KVTY 184 (242)
Q Consensus 110 ~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~-k~ty 184 (242)
.+..-+...|+.+.++ +.--+++|++.-.-.-.++=-++|..+|. -++++-.++ |-.+|+.+.+++|- .-.-
T Consensus 93 ~~~~g~~~~l~~l~~~-g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 93 RLYPGVKETLAALKAA-GYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM 169 (226)
T ss_pred ccCCCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence 3556677888887665 44446777765332223333457777765 356554432 46799999999974 3567
Q ss_pred EEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 185 VVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 185 vvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
++|||+...-++|++.+|++.-+..
T Consensus 170 i~igD~~~Di~~a~~~g~~~i~v~~ 194 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSVGVTY 194 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEEEECc
Confidence 7899999999999999999988863
No 20
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.78 E-value=0.02 Score=49.78 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvvIG 188 (242)
-+...|+.+.++ +.--.+||+.+-.-.-.++=-++|..+|. -|+++..++ +..+|+++.+++| +.-.-++||
T Consensus 112 gv~e~L~~L~~~-g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vg 188 (248)
T PLN02770 112 GLYKLKKWIEDR-GLKRAAVTNAPRENAELMISLLGLSDFFQ--AVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFE 188 (248)
T ss_pred cHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHHcCChhhCc--EEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEc
Confidence 355666666554 56677899988666666666688888885 467776543 4579999999998 446678899
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIss 209 (242)
|..---+|||+.||+++-+..
T Consensus 189 Ds~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 189 DSVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CCHHHHHHHHHCCCEEEEEeC
Confidence 999999999999999998864
No 21
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.58 E-value=0.022 Score=47.07 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=68.4
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEEcC
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVIGD 189 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvIGD 189 (242)
+...|+....+ +--+++|++.-.-+..|+--.||.++| +-|+.|..+| | ...|+...+++| ++-.-+.|||
T Consensus 104 ~~~~L~~l~~~--~~l~ilTNg~~~~~~~~l~~~gl~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD 179 (229)
T COG1011 104 ALEALKELGKK--YKLGILTNGARPHQERKLRQLGLLDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGD 179 (229)
T ss_pred HHHHHHHHHhh--ccEEEEeCCChHHHHHHHHHcCChhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECC
Confidence 45555555555 677899999555555555555566665 6799999999 4 579999999998 4567899999
Q ss_pred CHHHH-HHHHHcCCceeEec
Q psy8471 190 GQDEE-AAAKQNNFPFWRVS 208 (242)
Q Consensus 190 G~eEe-~AAk~~~~PFwrIs 208 (242)
..+.- .+|+++||--.-|+
T Consensus 180 ~~~~di~gA~~~G~~~vwi~ 199 (229)
T COG1011 180 SLENDILGARALGMKTVWIN 199 (229)
T ss_pred ChhhhhHHHHhcCcEEEEEC
Confidence 99999 89999999764444
No 22
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.51 E-value=0.04 Score=48.05 Aligned_cols=97 Identities=8% Similarity=-0.056 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhCC--CcEE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFGR--KVTY 184 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG~--k~ty 184 (242)
...-+...|+.+.++ +..-.|||++.-...-.++=.+++..+|. +-|+++-.++ | ..+|..+.+|+|- .-.-
T Consensus 102 ~~pg~~elL~~L~~~-g~~l~I~T~~~~~~~~~~l~~~~l~~~~~-d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 102 PIPGVLEVIAALRAR-GIKIGSTTGYTREMMDVVVPLAAAQGYRP-DHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCHHHHHHHHHHC-CCEEEEEcCCcHHHHHHHHHHHhhcCCCc-eEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 345567777777665 33444566555443333333556666653 5677776543 4 5799999999984 3678
Q ss_pred EEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 185 VVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 185 vvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
++|||..---+||++.||+++-|..
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEEcc
Confidence 9999999999999999999999975
No 23
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.44 E-value=0.014 Score=46.84 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC-CcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR-KVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~-k~tyvvIG 188 (242)
-+..+|+.+.++ +..-+++|++..+.. ++=.+++..+| +.|+++-.++ +...|+++.+++|- .-.-++||
T Consensus 92 g~~~~l~~l~~~-g~~i~i~S~~~~~~~--~l~~~~l~~~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Ig 166 (185)
T TIGR02009 92 GIENFLKRLKKK-GIAVGLGSSSKNADR--ILAKLGLTDYF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFE 166 (185)
T ss_pred CHHHHHHHHHHc-CCeEEEEeCchhHHH--HHHHcChHHHC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 456677777554 455567777622221 22236777776 4677765543 45799999999983 35578899
Q ss_pred CCHHHHHHHHHcCCcee
Q psy8471 189 DGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFw 205 (242)
|...--+||++.||+++
T Consensus 167 D~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 167 DALAGVQAARAAGMFAV 183 (185)
T ss_pred CcHhhHHHHHHCCCeEe
Confidence 99999999999999986
No 24
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.36 E-value=0.056 Score=39.29 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=35.6
Q ss_pred cChhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 165 IGKESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 165 iGKesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
..|...++++.++++.+ -..+.|||+....++|+.++++.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 96 KPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 35789999999999754 6678999999999999999998653
No 25
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.30 E-value=0.045 Score=47.02 Aligned_cols=95 Identities=8% Similarity=-0.063 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC--CcEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR--KVTYVV 186 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~--k~tyvv 186 (242)
.-+..+|+.+.++ +.--.|||+..--..-.++=-+++..+| .+-|+++-.++ +..+|.++.+++|- .-.-++
T Consensus 102 pg~~e~L~~L~~~-g~~l~IvT~~~~~~~~~~l~~~gl~~~f-~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~ 179 (253)
T TIGR01422 102 PGVIEVIAYLRAR-GIKIGSTTGYTREMMDVVAPEAALQGYR-PDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVK 179 (253)
T ss_pred CCHHHHHHHHHHC-CCeEEEECCCcHHHHHHHHHHHHhcCCC-CceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEE
Confidence 3456667666665 3344456665433222222246788876 25577766543 56899999999984 567899
Q ss_pred EcCCHHHHHHHHHcCCceeEecc
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIss 209 (242)
|||..---+|||..||+++-+..
T Consensus 180 IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 180 VGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred ECCcHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999965
No 26
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.25 E-value=0.026 Score=46.44 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEE
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVV 186 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvv 186 (242)
..-+..+|+.+.++ +..=++||++.- ....++=-+++..+| +.||++..+| | ..+|+++.+++| +.-.-++
T Consensus 107 ~~g~~~~l~~L~~~-g~~~~i~Sn~~~-~~~~~l~~~~l~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 107 YPDAIKLLKDLRER-GLILGVISNFDS-RLRGLLEALGLLEYF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred CcCHHHHHHHHHHC-CCEEEEEeCCch-hHHHHHHHCCcHHhc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 44556677766655 445577787652 222233235666666 6788887765 5 468999999998 4567899
Q ss_pred EcCCH-HHHHHHHHcCCce
Q psy8471 187 IGDGQ-DEEAAAKQNNFPF 204 (242)
Q Consensus 187 IGDG~-eEe~AAk~~~~PF 204 (242)
|||.. ..-+||++.||..
T Consensus 183 IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred ECCCchHHHHHHHHcCCee
Confidence 99997 5788999999874
No 27
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.21 E-value=0.046 Score=44.91 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCccccCccccccccC----hhHHHHHHHHhhCCC-cEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGRK-VTYVV 186 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~k-~tyvv 186 (242)
.-+...|+.+.++ +.--+++|++.- ..+-++| -+++..+|+ -|+++-.++ +..+|.++.+++|-+ -.-++
T Consensus 88 ~g~~~~L~~l~~~-g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ 163 (213)
T TIGR01449 88 PGVEATLGALRAK-GLRLGLVTNKPT-PLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVY 163 (213)
T ss_pred CCHHHHHHHHHHC-CCeEEEEeCCCH-HHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChHHHHHHHHHcCCChhHeEE
Confidence 3456666666554 344567777643 3332222 256777775 467765432 457999999999843 45778
Q ss_pred EcCCHHHHHHHHHcCCceeEecc
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIss 209 (242)
|||...--+||++.|||+.-+..
T Consensus 164 igDs~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 164 VGDSRVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred eCCCHHHHHHHHHCCCeEEEEcc
Confidence 99999999999999999998854
No 28
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.03 E-value=0.018 Score=48.14 Aligned_cols=80 Identities=8% Similarity=0.130 Sum_probs=59.7
Q ss_pred ceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCC
Q psy8471 128 CTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNF 202 (242)
Q Consensus 128 ~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~ 202 (242)
.-=.|||++.-...-.++=.++|..+|+ .-|+|+..+| +..+|+.+.+++|-+ -.-++|||...--+|||+.||
T Consensus 102 ~~~~ivTn~~~~~~~~~l~~~~l~~~F~-~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~ 180 (221)
T PRK10563 102 VPMCVVSNGPVSKMQHSLGKTGMLHYFP-DKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGM 180 (221)
T ss_pred CCEEEEeCCcHHHHHHHHHhcChHHhCc-ceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCC
Confidence 4556678776544444443579999997 2366665444 479999999999844 557899999999999999999
Q ss_pred ceeEec
Q psy8471 203 PFWRVS 208 (242)
Q Consensus 203 PFwrIs 208 (242)
+++-+.
T Consensus 181 ~~i~~~ 186 (221)
T PRK10563 181 EVFYFC 186 (221)
T ss_pred EEEEEC
Confidence 998774
No 29
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=95.90 E-value=0.11 Score=46.87 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc-ChhHHHHHHHHhhC-CCcEEEEEcCC
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI-GKESCFERIGTRFG-RKVTYVVIGDG 190 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki-GKesCFerI~~RFG-~k~tyvvIGDG 190 (242)
.-+...|+.+..+ +..-.+||++.-...-.++=-+||..+|.. |.++..+ .|...|+++.+++| ..-.-++|||.
T Consensus 145 pg~~e~L~~L~~~-gi~laIvSn~~~~~~~~~L~~~gl~~~F~~--vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 145 PGVADLLAQLRSR-SLCLGILSSNSRQNIEAFLQRQGLRSLFSV--VQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCChhheEE--EEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 4566777777654 455667888775544444445677788863 5555443 47889999999997 44678999999
Q ss_pred HHHHHHHHHcCCceeEecc
Q psy8471 191 QDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 191 ~eEe~AAk~~~~PFwrIss 209 (242)
..--+||++.||.+.-|..
T Consensus 222 ~~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTW 240 (273)
T ss_pred HHHHHHHHHCCCeEEEEec
Confidence 9999999999999987765
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=95.90 E-value=0.081 Score=50.81 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYV 185 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyv 185 (242)
...-+...|+.+..+ +.--.|+|+..-.-.-.++=-+||..+|. -|+++..++ +...|..+.+++| +.-.-+
T Consensus 217 l~pGa~ElL~~Lk~~-GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 217 LRTGSQEFVNVLMNY-KIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 344556677777655 56667888876333322333367777776 488887654 5579999999998 456788
Q ss_pred EEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 186 VIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 186 vIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
+|||...--+|||..||+++-|....+...+
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l 324 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAVASKHPIYEL 324 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCCCChhHh
Confidence 8999999999999999999999874444443
No 31
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.79 E-value=0.12 Score=46.34 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHH-hhcCCccccCcccccccc--Ch--hHHHHHHHHhhC-CCcE
Q psy8471 110 NWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLL-FGLGDIFQVENIYSSTKI--GK--ESCFERIGTRFG-RKVT 183 (242)
Q Consensus 110 ~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LL-ygL~~~fpiENIYSa~ki--GK--esCFerI~~RFG-~k~t 183 (242)
....-+..+|+.+.++ +.-=.|||++. .+.+.++|= +....+|..-.++++..+ +| ...|.++.+++| +.-.
T Consensus 144 ~l~pGv~elL~~L~~~-g~~l~IvTn~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 144 PLRPGVLRLMDEALAA-GIKVAVCSTSN-EKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CchhhHHHHHHHHHHC-CCeEEEEeCCC-HHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 3455677788777665 44445666653 344444432 111233433233344433 45 459999999998 4467
Q ss_pred EEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 184 YVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 184 yvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.++|||...--+||++.||+++-+..
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEcc
Confidence 88999999999999999999999855
No 32
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.59 E-value=0.25 Score=41.11 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCcccc-----Ccccccc-----c--cChhHHHHHHHHhhCCC
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQV-----ENIYSST-----K--IGKESCFERIGTRFGRK 181 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpi-----ENIYSa~-----k--iGKesCFerI~~RFG~k 181 (242)
+...|+.+.++ +.-=++||++. -+.+-.++ -+++..+|.. +++|... . .+|...|+++.+++|-+
T Consensus 90 ~~~~l~~l~~~-g~~~~IvS~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 167 (219)
T TIGR00338 90 AEELVKTLKEK-GYKVAVISGGF-DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGIS 167 (219)
T ss_pred HHHHHHHHHHC-CCEEEEECCCc-HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCC
Confidence 34555555543 33446677764 33322222 3677776643 2332221 1 24899999999999733
Q ss_pred -cEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 182 -VTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 182 -~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
..-++|||+..--+||++.++|+.
T Consensus 168 ~~~~i~iGDs~~Di~aa~~ag~~i~ 192 (219)
T TIGR00338 168 PENTVAVGDGANDLSMIKAAGLGIA 192 (219)
T ss_pred HHHEEEEECCHHHHHHHHhCCCeEE
Confidence 344568999988899999999974
No 33
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.49 E-value=0.11 Score=49.40 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=69.3
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc---ChhHHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI---GKESCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki---GKesCFerI~~RFG~k~tyvvIGDG~ 191 (242)
+...|+.+.++ +.--.|||+++---.-.++=-+++..+|.. |.++-.+ +|...|..+.++++++ .-++|||..
T Consensus 335 ~~e~L~~Lk~~-g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~--i~~~d~v~~~~kP~~~~~al~~l~~~-~~v~VGDs~ 410 (459)
T PRK06698 335 VKEIFTYIKEN-NCSIYIASNGLTEYLRAIVSYYDLDQWVTE--TFSIEQINSLNKSDLVKSILNKYDIK-EAAVVGDRL 410 (459)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHCCcHhhcce--eEecCCCCCCCCcHHHHHHHHhcCcc-eEEEEeCCH
Confidence 35566666554 566778999877666666656777777743 5555432 5888999999999875 689999999
Q ss_pred HHHHHHHHcCCceeEecc
Q psy8471 192 DEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 192 eEe~AAk~~~~PFwrIss 209 (242)
.--+|||+.||+++-+..
T Consensus 411 ~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 411 SDINAAKDNGLIAIGCNF 428 (459)
T ss_pred HHHHHHHHCCCeEEEEeC
Confidence 999999999999988865
No 34
>PLN02940 riboflavin kinase
Probab=95.45 E-value=0.071 Score=50.15 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEEc
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvIG 188 (242)
+..+|+.+.++ +..-.+||+..-.....++. .+++..+|. =|+++..++ | ...|.++.+++| +.-.-++||
T Consensus 98 v~elL~~Lk~~-g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd--~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VG 174 (382)
T PLN02940 98 ANRLIKHLKSH-GVPMALASNSPRANIEAKISCHQGWKESFS--VIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIE 174 (382)
T ss_pred HHHHHHHHHHC-CCcEEEEeCCcHHHHHHHHHhccChHhhCC--EEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEe
Confidence 45566666554 55667888876444444555 578888885 467776654 4 589999999998 456788899
Q ss_pred CCHHHHHHHHHcCCceeEeccc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIssh 210 (242)
|...--+||++.||+++-|...
T Consensus 175 Ds~~Di~aA~~aGi~~I~v~~g 196 (382)
T PLN02940 175 DSLPGVMAGKAAGMEVIAVPSI 196 (382)
T ss_pred CCHHHHHHHHHcCCEEEEECCC
Confidence 9999999999999999999763
No 35
>PLN02811 hydrolase
Probab=95.44 E-value=0.098 Score=44.26 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHH-hhcCCccccCcccccc--cc--Ch--hHHHHHHHHhhC---CC
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLL-FGLGDIFQVENIYSST--KI--GK--ESCFERIGTRFG---RK 181 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LL-ygL~~~fpiENIYSa~--ki--GK--esCFerI~~RFG---~k 181 (242)
..-+..+|+.+.++ ++.-.+||+.+-.-...|.+- .+|..+|. -|+++- .+ +| ...|...++++| -+
T Consensus 80 ~~gv~e~l~~L~~~-g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 80 MPGAERLVRHLHAK-GIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CccHHHHHHHHHHC-CCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 35667777777665 677788888764333333332 35555554 577777 44 34 469999999997 33
Q ss_pred -cEEEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 182 -VTYVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 182 -~tyvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
-..|+|||...--+||++.||++.-+..
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEeC
Confidence 4589999999999999999999999965
No 36
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.33 E-value=0.22 Score=42.59 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc--C--hhHHHHHHHHhhC-CCcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI--G--KESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki--G--KesCFerI~~RFG-~k~tyvvIG 188 (242)
-+..+|+.+.++ +..-.++|+..--....++=-+++..+|.+ |+++..+ + +..+|+++.+++| ..-.-++||
T Consensus 99 g~~~~L~~L~~~-g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~--i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IG 175 (229)
T PRK13226 99 GVEGMLQRLECA-GCVWGIVTNKPEYLARLILPQLGWEQRCAV--LIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVG 175 (229)
T ss_pred CHHHHHHHHHHC-CCeEEEECCCCHHHHHHHHHHcCchhcccE--EEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeC
Confidence 344556555443 445568888754322222223566666653 5555433 2 5678999999998 456789999
Q ss_pred CCHHHHHHHHHcCCceeEecc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIss 209 (242)
|...--+|||..||++.-+..
T Consensus 176 Ds~~Di~aA~~aG~~~i~v~~ 196 (229)
T PRK13226 176 DDERDILAARAAGMPSVAALW 196 (229)
T ss_pred CCHHHHHHHHHCCCcEEEEee
Confidence 999888999999999977743
No 37
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.25 E-value=0.12 Score=43.37 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=65.4
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCCC-cEEEEEcC
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGRK-VTYVVIGD 189 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~k-~tyvvIGD 189 (242)
+...|+.+.++ ..--++||++.-.-.-..+=-+++..+| +.|+++-.++ +-..|+++.+++|-+ -.-++|||
T Consensus 97 ~~~~l~~l~~~-g~~~~i~S~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igD 173 (222)
T PRK10826 97 VREALALCKAQ-GLKIGLASASPLHMLEAVLTMFDLRDYF--DALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALED 173 (222)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHhCcchhcc--cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcC
Confidence 45555555554 4556678776543222222237787887 4688876643 346999999999844 56789999
Q ss_pred CHHHHHHHHHcCCceeEecc
Q psy8471 190 GQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 190 G~eEe~AAk~~~~PFwrIss 209 (242)
....-+||++.++|+.-+..
T Consensus 174 s~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 174 SFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred ChhhHHHHHHcCCEEEEecC
Confidence 99999999999999988865
No 38
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=95.11 E-value=0.21 Score=42.86 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCcceEEEEcCC-cchHHHHHHH--HhhcC---------CccccCccccccccCh----hHHHHHHHHhh-
Q psy8471 116 IKCLNIINSRSTCTNVIVTCT-QLVPALAKVL--LFGLG---------DIFQVENIYSSTKIGK----ESCFERIGTRF- 178 (242)
Q Consensus 116 ~k~L~~i~sR~~~vNVLVTtt-qLVPaLAK~L--LygL~---------~~fpiENIYSa~kiGK----esCFerI~~RF- 178 (242)
...|+.+.++ +..-.++|+. +-- .++-. .+++. .+| +.|+++.+.+| +..++.+.+++
T Consensus 51 ~elL~~Lk~~-G~~l~I~Sn~~~~~--~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~ 125 (174)
T TIGR01685 51 RDVLQTLKDA-GTYLATASWNDVPE--WAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDP 125 (174)
T ss_pred HHHHHHHHHC-CCEEEEEeCCCChH--HHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhccc
Confidence 3444444432 4455677765 322 22222 34554 666 68888877665 45667777776
Q ss_pred -C-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 179 -G-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 179 -G-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
| ..-.-++|||...--+||++.|++++-+..-.++...-.-||
T Consensus 126 ~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~~~~~~ 170 (174)
T TIGR01685 126 SVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTFKKILE 170 (174)
T ss_pred CCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHHHHHHH
Confidence 3 557889999999999999999999999988766665444433
No 39
>PRK11587 putative phosphatase; Provisional
Probab=95.07 E-value=0.18 Score=42.48 Aligned_cols=96 Identities=20% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc----ChhHHHHHHHHhhC-CCcEEEE
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI----GKESCFERIGTRFG-RKVTYVV 186 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki----GKesCFerI~~RFG-~k~tyvv 186 (242)
..-+...|+.+.++ +.--.+||+..--....++-..++. .| +-|+++-.+ .+..+|..+.+++| +.-.-++
T Consensus 85 ~pg~~e~L~~L~~~-g~~~~ivTn~~~~~~~~~l~~~~l~-~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ 160 (218)
T PRK11587 85 LPGAIALLNHLNKL-GIPWAIVTSGSVPVASARHKAAGLP-AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV 160 (218)
T ss_pred CcCHHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHhcCCC-Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEE
Confidence 34456667666555 4556778887754444444455663 33 346665333 35689999999998 4466789
Q ss_pred EcCCHHHHHHHHHcCCceeEecccc
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSSHS 211 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIssh~ 211 (242)
|||...--+||++.||+++-+....
T Consensus 161 igDs~~di~aA~~aG~~~i~v~~~~ 185 (218)
T PRK11587 161 VEDAPAGVLSGLAAGCHVIAVNAPA 185 (218)
T ss_pred EecchhhhHHHHHCCCEEEEECCCC
Confidence 9999999999999999999997644
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=94.92 E-value=0.24 Score=38.91 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcc--hHHHHHHHHhhcCCccccCccccccccC---hhHHHHHHHHhhCCCcEEEEEc
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQL--VPALAKVLLFGLGDIFQVENIYSSTKIG---KESCFERIGTRFGRKVTYVVIG 188 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqL--VPaLAK~LLygL~~~fpiENIYSa~kiG---KesCFerI~~RFG~k~tyvvIG 188 (242)
-+.+.|+.+.++ +.--.+||++.- +..+.|.+ +..+|. -|+++..++ +...|+++.+++|-+..-++||
T Consensus 68 g~~e~l~~L~~~-g~~~~i~T~~~~~~~~~~~~~~---l~~~f~--~i~~~~~~~~Kp~~~~~~~~~~~~~~~~~~l~iG 141 (154)
T TIGR01549 68 GAADLLKRLKEA-GIKLGIISNGSLRAQKLLLRKH---LGDYFD--LILGSDEFGAKPEPEIFLAALESLGLPPEVLHVG 141 (154)
T ss_pred CHHHHHHHHHHC-cCeEEEEeCCchHHHHHHHHHH---HHhcCc--EEEecCCCCCCcCHHHHHHHHHHcCCCCCEEEEe
Confidence 356677766655 455677776652 22223322 555553 345444333 5688999999998433889999
Q ss_pred CCHHHHHHHHHcC
Q psy8471 189 DGQDEEAAAKQNN 201 (242)
Q Consensus 189 DG~eEe~AAk~~~ 201 (242)
|....-+||++.|
T Consensus 142 Ds~~Di~aa~~aG 154 (154)
T TIGR01549 142 DNLNDIEGARNAG 154 (154)
T ss_pred CCHHHHHHHHHcc
Confidence 9988889998764
No 41
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=94.66 E-value=0.18 Score=40.29 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=55.1
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHH-HHhhcCCccccCccccc------------------------cccChhH
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKV-LLFGLGDIFQVENIYSS------------------------TKIGKES 169 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~-LLygL~~~fpiENIYSa------------------------~kiGKes 169 (242)
+.++|+.+.++ +..-+++|++.- +.+-.+ --+++..+|. -|||+ ....|..
T Consensus 77 ~~~ll~~l~~~-g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~--~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~~ 152 (188)
T TIGR01489 77 FKEFIAFIKEH-GIDFIVISDGND-FFIDPVLEGIGEKDVFI--EIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKGK 152 (188)
T ss_pred HHHHHHHHHHc-CCcEEEEeCCcH-HHHHHHHHHcCChhhee--EEeccCceECCCCcEEEecCCCCccCcCCCCCCHHH
Confidence 45566655443 344456666543 333332 2356666653 35542 2245999
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
+++++++++ .-.-+.||||..--+||+..++-|-|
T Consensus 153 ~~~~~~~~~--~~~~i~iGD~~~D~~aa~~~d~~~ar 187 (188)
T TIGR01489 153 VIHKLSEPK--YQHIIYIGDGVTDVCPAKLSDVVFAK 187 (188)
T ss_pred HHHHHHhhc--CceEEEECCCcchhchHhcCCccccC
Confidence 999999887 45577889999999999999887754
No 42
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=94.60 E-value=0.17 Score=43.72 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=65.3
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhC-CCcEEEEEcC
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFG-RKVTYVVIGD 189 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG-~k~tyvvIGD 189 (242)
+..+|+.+.++ ..=++|||+.--. =.+||..+| +.|+++-.++ +...|+.+.+++| ..-.-++|||
T Consensus 118 v~~~L~~L~~~--~~l~i~Tn~~~~~-----~~~gl~~~f--d~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD 188 (238)
T PRK10748 118 THDTLKQLAKK--WPLVAITNGNAQP-----ELFGLGDYF--EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGD 188 (238)
T ss_pred HHHHHHHHHcC--CCEEEEECCCchH-----HHCCcHHhh--ceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcC
Confidence 55666666543 4566789976432 346788777 4788887654 5779999999998 5567999999
Q ss_pred CH-HHHHHHHHcCCceeEeccc
Q psy8471 190 GQ-DEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 190 G~-eEe~AAk~~~~PFwrIssh 210 (242)
.. .--++||+.||.+.-|...
T Consensus 189 ~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 189 DLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred CcHHHHHHHHHCCCeEEEEcCC
Confidence 94 7788999999999888653
No 43
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.54 E-value=0.2 Score=40.52 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred eEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC----hhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCc
Q psy8471 129 TNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG----KESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFP 203 (242)
Q Consensus 129 vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG----KesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~P 203 (242)
.-+|+|+..---.-.++=-+++..+|. -|.++-.++ +...|+++.+|+|- .-.-++|||..---+||+..||+
T Consensus 104 ~l~I~T~~~~~~~~~~l~~~~l~~~fd--~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 104 PMAVGTGSESAIAEALLAHLGLRRYFD--AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred CEEEEcCCchHHHHHHHHhCCcHhHce--EEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCE
Confidence 345666654333344455578888876 477776543 56789999999984 34567789999999999999999
Q ss_pred eeEec
Q psy8471 204 FWRVS 208 (242)
Q Consensus 204 FwrIs 208 (242)
+.-+.
T Consensus 182 ~i~~~ 186 (188)
T PRK10725 182 AVDVR 186 (188)
T ss_pred EEeec
Confidence 98664
No 44
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=94.52 E-value=0.3 Score=43.47 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCccccCcccccccc----ChhHHHHHHHHhhCC-CcEEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQVENIYSSTKI----GKESCFERIGTRFGR-KVTYVV 186 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpiENIYSa~ki----GKesCFerI~~RFG~-k~tyvv 186 (242)
..+...|+.+.++ +.--++||+..- +.+.++| .++++.+|+. |+++-.+ .+...|+++.+++|- .-.-++
T Consensus 104 ~g~~e~L~~Lk~~-g~~l~ivTn~~~-~~~~~~l~~~~i~~~f~~--i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 104 PGVRDTLKWLKKQ-GVEMALITNKPE-RFVAPLLDQMKIGRYFRW--IIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CCHHHHHHHHHHC-CCeEEEEECCcH-HHHHHHHHHcCcHhhCeE--EEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 4445666666554 344456666543 3333332 3577777753 6665432 356799999999984 456778
Q ss_pred EcCCHHHHHHHHHcCCceeEecc
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIss 209 (242)
|||+...-++|++.+|+++-|..
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999887754
No 45
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.37 E-value=0.28 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHh-----hcCCccccCccccccccC---hhHHHHHHHHhhC-CCcEEE
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLF-----GLGDIFQVENIYSSTKIG---KESCFERIGTRFG-RKVTYV 185 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLy-----gL~~~fpiENIYSa~kiG---KesCFerI~~RFG-~k~tyv 185 (242)
+..+|+.+.++ ..--.++||++.- ..|.++- +|..+| +.+++. .+| +...|++|.+++| +.-.-+
T Consensus 100 v~e~L~~Lk~~-G~~l~I~Sn~s~~--~~~~~~~~~~~~~L~~~f--~~~fd~-~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 100 VPPALEAWLQL-GLRLAVYSSGSVP--AQKLLFGHSDAGNLTPYF--SGYFDT-TVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCCHH--HHHHHHhhccccchhhhc--ceEEEe-CcccCCCHHHHHHHHHHhCcChhHEE
Confidence 45555555544 4556778887532 2333332 222322 233332 233 5789999999998 446688
Q ss_pred EEcCCHHHHHHHHHcCCceeEec
Q psy8471 186 VIGDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 186 vIGDG~eEe~AAk~~~~PFwrIs 208 (242)
+|||...+-+||++.||++.-+.
T Consensus 174 fVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 174 FLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred EEeCCHHHHHHHHHcCCEEEEEE
Confidence 99999999999999999987764
No 46
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=94.21 E-value=0.53 Score=36.42 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcc-------hHHHHHHH-HhhcCCccccCccccccccC--hhHHHHHHHHhhC--CCc
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQL-------VPALAKVL-LFGLGDIFQVENIYSSTKIG--KESCFERIGTRFG--RKV 182 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqL-------VPaLAK~L-LygL~~~fpiENIYSa~kiG--KesCFerI~~RFG--~k~ 182 (242)
+..+|+.+..+ ++-=+++|+..- -..+.+.| -+++. | .-+|++.... |.+.|+++.++++ +.-
T Consensus 30 v~~~l~~L~~~-g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~--~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 104 (132)
T TIGR01662 30 VPDALAELKEA-GYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--I--DVLYACPHCRKPKPGMFLEALKRFNEIDPE 104 (132)
T ss_pred HHHHHHHHHHC-CCEEEEEECCccccccHHHHHHHHHHHHHCCCC--E--EEEEECCCCCCCChHHHHHHHHHcCCCChh
Confidence 34455555433 566677888761 22222222 23443 2 1223332333 5689999999994 557
Q ss_pred EEEEEcCC-HHHHHHHHHcCCceeEec
Q psy8471 183 TYVVIGDG-QDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 183 tyvvIGDG-~eEe~AAk~~~~PFwrIs 208 (242)
.-++|||+ ...-++||+++|+++-+.
T Consensus 105 ~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 105 ESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred heEEEcCCCcccHHHHHHCCCeEEEee
Confidence 78899994 777889999999998764
No 47
>PRK06769 hypothetical protein; Validated
Probab=93.11 E-value=1.1 Score=37.26 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcch-------HHHHH-HHHhhcCCccccCc-cccccc--cChhHHHHHHHHhhCC-C
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLV-------PALAK-VLLFGLGDIFQVEN-IYSSTK--IGKESCFERIGTRFGR-K 181 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLV-------PaLAK-~LLygL~~~fpiEN-IYSa~k--iGKesCFerI~~RFG~-k 181 (242)
-+...|+.+.++ ..-=.+||+..-+ ..+.+ +-.+|+..+|-... ...... -.+...|..+.+|+|- .
T Consensus 32 gv~e~L~~Lk~~-G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p 110 (173)
T PRK06769 32 FTKASLQKLKAN-HIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDL 110 (173)
T ss_pred CHHHHHHHHHHC-CCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCH
Confidence 345667777665 3555667776532 12222 22334333321100 000012 2356799999999984 4
Q ss_pred cEEEEEcCCHHHHHHHHHcCCceeEecccccHH
Q psy8471 182 VTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLA 214 (242)
Q Consensus 182 ~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~ 214 (242)
-.-++|||...--+||++.+|.++-+....+-.
T Consensus 111 ~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~ 143 (173)
T PRK06769 111 TQCAVIGDRWTDIVAAAKVNATTILVRTGAGYD 143 (173)
T ss_pred HHeEEEcCCHHHHHHHHHCCCeEEEEecCCCch
Confidence 678999999988899999999999998744333
No 48
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=93.07 E-value=0.64 Score=37.61 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEe
Q psy8471 166 GKESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 166 GKesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrI 207 (242)
+|...++++.+++|- .-.-++|||+..--++|+..++||.-.
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLG 189 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC
Confidence 466789999999984 456788999999999999999999643
No 49
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=92.91 E-value=0.81 Score=37.88 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=59.6
Q ss_pred HHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc---ChhHHHHHHHHhhCC-CcEEEEEcCCH
Q psy8471 116 IKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI---GKESCFERIGTRFGR-KVTYVVIGDGQ 191 (242)
Q Consensus 116 ~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki---GKesCFerI~~RFG~-k~tyvvIGDG~ 191 (242)
...|+.+..+ ...-.|+|++.-.-.-.++=-+||..+| +.|+++..+ .+...|+.+.++.|- ...-++|||..
T Consensus 112 ~~~L~~l~~~-g~~~~i~T~~~~~~~~~~l~~~gl~~~f--~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~~ 188 (197)
T TIGR01548 112 KGLLRELHRA-PKGMAVVTGRPRKDAAKFLTTHGLEILF--PVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDTV 188 (197)
T ss_pred HHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHcCchhhC--CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCCH
Confidence 5666666554 4566889988766555555567888888 467766553 357899999999984 35678999999
Q ss_pred HHHHHHHH
Q psy8471 192 DEEAAAKQ 199 (242)
Q Consensus 192 eEe~AAk~ 199 (242)
---+|||+
T Consensus 189 ~Di~aA~~ 196 (197)
T TIGR01548 189 DDIITGRK 196 (197)
T ss_pred HHHHHHHh
Confidence 88888875
No 50
>PLN02954 phosphoserine phosphatase
Probab=92.40 E-value=2.2 Score=35.65 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=32.5
Q ss_pred cChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 165 IGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 165 iGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
.+|..+++++++++|.+ .-++|||+.---+||+..++.++
T Consensus 154 ~~K~~~i~~~~~~~~~~-~~i~iGDs~~Di~aa~~~~~~~~ 193 (224)
T PLN02954 154 GGKAEAVQHIKKKHGYK-TMVMIGDGATDLEARKPGGADLF 193 (224)
T ss_pred ccHHHHHHHHHHHcCCC-ceEEEeCCHHHHHhhhcCCCCEE
Confidence 46999999999999854 56778999998889888666643
No 51
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=92.36 E-value=1.5 Score=36.06 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEeccccc
Q psy8471 167 KESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSD 212 (242)
Q Consensus 167 KesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~D 212 (242)
+...|..+.+++|- .-.-++|||...--++|+..+|++|-+.....
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~ 151 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKG 151 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCC
Confidence 36899999999984 46778899999999999999999999976543
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=92.14 E-value=1.2 Score=37.21 Aligned_cols=44 Identities=18% Similarity=0.054 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 166 GKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 166 GKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.|...|+.+.+++| .+-.-++|||+...-++|++.||++..+..
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 46799999999997 556788999999889999999999998875
No 53
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=91.62 E-value=1.9 Score=35.79 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhC-CCcEEEEEcCCH-H
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFG-RKVTYVVIGDGQ-D 192 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG-~k~tyvvIGDG~-e 192 (242)
+...|+.+.++ +.--+++|+..- ...++-++-.++-.+ |+...-.+..+|+.+.+++| ++-.-++|||.. .
T Consensus 48 v~e~L~~Lk~~-g~~l~I~Sn~~~-~~~~~~~~~~~gl~~-----~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~ 120 (170)
T TIGR01668 48 LRDWIEELKAA-GRKLLIVSNNAG-EQRAKAVEKALGIPV-----LPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFT 120 (170)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCch-HHHHHHHHHHcCCEE-----EcCCCCCChHHHHHHHHHcCCCHHHEEEECCcchH
Confidence 34455555443 355577777642 344444443333221 22222346789999999998 456788999997 4
Q ss_pred HHHHHHHcCCceeEecc
Q psy8471 193 EEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 193 Ee~AAk~~~~PFwrIss 209 (242)
.-+||+.+||+++-|..
T Consensus 121 Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 121 DVMGGNRNGSYTILVEP 137 (170)
T ss_pred HHHHHHHcCCeEEEEcc
Confidence 78999999999998865
No 54
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.62 E-value=0.25 Score=42.95 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=55.1
Q ss_pred eEEEEcC-CcchHHHHHHHHhhcCCccc-cCccccccc--cCh--hHHHHHHHHhhCCC--cEEEEEcCCHH-HHHHHHH
Q psy8471 129 TNVIVTC-TQLVPALAKVLLFGLGDIFQ-VENIYSSTK--IGK--ESCFERIGTRFGRK--VTYVVIGDGQD-EEAAAKQ 199 (242)
Q Consensus 129 vNVLVTt-tqLVPaLAK~LLygL~~~fp-iENIYSa~k--iGK--esCFerI~~RFG~k--~tyvvIGDG~e-Ee~AAk~ 199 (242)
+-+++|+ +.+.|.---.+.++++.+|. ++++.+... .|| ...|+.+.+++|-+ -++++|||..+ .=++|++
T Consensus 146 ~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 225 (236)
T TIGR01460 146 VPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKN 225 (236)
T ss_pred CeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHH
Confidence 6788888 44444322245566776665 355444432 454 78999999999833 34689999984 6779999
Q ss_pred cCCceeEec
Q psy8471 200 NNFPFWRVS 208 (242)
Q Consensus 200 ~~~PFwrIs 208 (242)
.+|++.-+.
T Consensus 226 ~G~~~i~v~ 234 (236)
T TIGR01460 226 AGFDTLLVL 234 (236)
T ss_pred CCCcEEEEe
Confidence 999988774
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=90.72 E-value=2.6 Score=37.82 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCcceEEEEcCC---cchHHHHHHH-HhhcCCccccCcccccccc--ChhHHHHHHHHhhCCCcEEEEEc
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCT---QLVPALAKVL-LFGLGDIFQVENIYSSTKI--GKESCFERIGTRFGRKVTYVVIG 188 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTtt---qLVPaLAK~L-LygL~~~fpiENIYSa~ki--GKesCFerI~~RFG~k~tyvvIG 188 (242)
|..+|+.+.+|.. -=.+||+. +--+.+..++ -+|+..+|+. ||+.... .|..-..++ +++|- + +.||
T Consensus 119 a~elL~~l~~~G~-~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~--i~~~d~~~~~Kp~~~~~l-~~~~i-~--i~vG 191 (237)
T TIGR01672 119 ARQLIDMHQRRGD-AIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPV--IFAGDKPGQYQYTKTQWI-QDKNI-R--IHYG 191 (237)
T ss_pred HHHHHHHHHHCCC-EEEEEeCCCCCcCHHHHHHHHHHhCCchheeE--EECCCCCCCCCCCHHHHH-HhCCC-e--EEEe
Confidence 7777877777633 33567765 2333333433 3788888865 5665544 344444333 55664 2 7899
Q ss_pred CCHHHHHHHHHcCCceeEec
Q psy8471 189 DGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIs 208 (242)
|...--+|||..++++.++.
T Consensus 192 Ds~~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 192 DSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CCHHHHHHHHHCCCCEEEEE
Confidence 99999999999999999985
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=90.48 E-value=2.4 Score=34.91 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCce-eEecc
Q psy8471 167 KESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPF-WRVSS 209 (242)
Q Consensus 167 KesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PF-wrIss 209 (242)
+...|..+.+|+| ..-.-++|||...--+||++.|+++ .=+..
T Consensus 108 ~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~ 152 (176)
T TIGR00213 108 KPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRT 152 (176)
T ss_pred CHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEec
Confidence 5789999999998 4466677999999999999999998 44444
No 57
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=90.45 E-value=2.3 Score=33.81 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHh--h-------cCCccccCccccccccChhHHHHHHHHhhC---CC
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLF--G-------LGDIFQVENIYSSTKIGKESCFERIGTRFG---RK 181 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLy--g-------L~~~fpiENIYSa~kiGKesCFerI~~RFG---~k 181 (242)
-+..+|+.+.++ +..=+++|+..-- ..++-+|- + |..+| +.++++-...|-..|..+.+++| ++
T Consensus 33 gv~e~L~~Lk~~-g~~l~i~Sn~~~~-~~~~~~l~~~~~~~~i~~l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 33 EIRDKLQTLKKN-GFLLALASYNDDP-HVAYELLKIFEDFGIIFPLAEYF--DPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHC-CeEEEEEeCCCCH-HHHHHHHHhccccccchhhHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 345556655543 3344566666333 33333332 3 44444 45666645689999999999999 67
Q ss_pred cEEEEEcCCHHH-HHHHH
Q psy8471 182 VTYVVIGDGQDE-EAAAK 198 (242)
Q Consensus 182 ~tyvvIGDG~eE-e~AAk 198 (242)
-.-++|||.... ++.+|
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 788899999888 44443
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=90.35 E-value=1.8 Score=36.19 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchH----------HHHHHHHhhcCCccccCccccccc--cCh--hHHHHHHHHhhC-
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVP----------ALAKVLLFGLGDIFQVENIYSSTK--IGK--ESCFERIGTRFG- 179 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVP----------aLAK~LLygL~~~fpiENIYSa~k--iGK--esCFerI~~RFG- 179 (242)
+..+|+.+.++ +.-=++||+..-.. ..+.-+|=.+|-.+ ..++++.. ..| ...|+++.+++|
T Consensus 47 v~e~L~~Lk~~-G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~ 123 (166)
T TIGR01664 47 IPAKLQELDDE-GYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNS 123 (166)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCC
Confidence 34445555433 55667888865420 11222333344322 33443332 344 569999999998
Q ss_pred --CCcEEEEEcCCH--------HHHHHHHHcCCce
Q psy8471 180 --RKVTYVVIGDGQ--------DEEAAAKQNNFPF 204 (242)
Q Consensus 180 --~k~tyvvIGDG~--------eEe~AAk~~~~PF 204 (242)
..-.-++|||.. ..-+||++.|++|
T Consensus 124 ~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 124 PIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 345789999985 4778999999998
No 59
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.12 E-value=4.2 Score=43.66 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcC-CccccCccccccccC--h--hHHHHHHHHhhC-CCcEE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLG-DIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTY 184 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~-~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~ty 184 (242)
++.-+..+|+.+.++ ..--+++|+....-.-.++=-+++. .+| +-|+++-.++ | ...|+.+.+++| ..-.-
T Consensus 162 ~~pG~~elL~~Lk~~-G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~ 238 (1057)
T PLN02919 162 GFPGALELITQCKNK-GLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKPAPDIFLAAAKILGVPTSEC 238 (1057)
T ss_pred cCccHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCCCHHHHHHHHHHcCcCcccE
Confidence 456677778888766 4556778877644332222224453 333 5678877655 3 589999999998 34678
Q ss_pred EEEcCCHHHHHHHHHcCCceeEeccccc
Q psy8471 185 VVIGDGQDEEAAAKQNNFPFWRVSSHSD 212 (242)
Q Consensus 185 vvIGDG~eEe~AAk~~~~PFwrIssh~D 212 (242)
++|||...--+|||..+|+++-+.....
T Consensus 239 v~IgDs~~Di~AA~~aGm~~I~v~~~~~ 266 (1057)
T PLN02919 239 VVIEDALAGVQAARAAGMRCIAVTTTLS 266 (1057)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEECCCCC
Confidence 8899999999999999999999976433
No 60
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=89.46 E-value=4.7 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=37.3
Q ss_pred cChhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCCceeEec
Q psy8471 165 IGKESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 165 iGKesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~PFwrIs 208 (242)
-.|...|+.+++++|-+ -.-++|||....-++||..||+.+-|.
T Consensus 101 KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 101 KPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLV 145 (147)
T ss_pred CCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEec
Confidence 35788999999999854 457889999999999999999988663
No 61
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=88.40 E-value=0.78 Score=33.04 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhC-CCcEEEEEcCC-HHHHHHHHHcCCceeEecc
Q psy8471 168 ESCFERIGTRFG-RKVTYVVIGDG-QDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 168 esCFerI~~RFG-~k~tyvvIGDG-~eEe~AAk~~~~PFwrIss 209 (242)
...|+.+.+++| ..-..++|||. ...-++|+++||.++-|.+
T Consensus 7 p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 7 PGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp HHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 468999999997 56789999999 8888899999999999987
No 62
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=88.20 E-value=0.69 Score=40.62 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=38.6
Q ss_pred cCh--hHHHHHHHHhhC-CCcEEEEEcCCH-HHHHHHHHcCCceeEeccc
Q psy8471 165 IGK--ESCFERIGTRFG-RKVTYVVIGDGQ-DEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 165 iGK--esCFerI~~RFG-~k~tyvvIGDG~-eEe~AAk~~~~PFwrIssh 210 (242)
.|| ...|+.+.+++| +.-..++|||.. ..-.+|++.+|+++-|...
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G 225 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTG 225 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCC
Confidence 455 679999999998 456799999997 4778999999999998753
No 63
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=88.16 E-value=2.7 Score=35.23 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.6
Q ss_pred ceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 128 CTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 128 ~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
.--+++|+..-- .++-++=.++ ++.+|+. ...|...|+++.+++|-+ -.-++|||+.---.+|+..++++.
T Consensus 65 i~v~I~T~~~~~--~v~~~l~~lg----l~~~f~g-~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~- 136 (183)
T PRK09484 65 IEVAIITGRKSK--LVEDRMTTLG----ITHLYQG-QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA- 136 (183)
T ss_pred CEEEEEeCCCcH--HHHHHHHHcC----CceeecC-CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe-
Confidence 334466666432 2233333322 3444443 356999999999999854 578889999999999999999965
Q ss_pred ecccccH
Q psy8471 207 VSSHSDL 213 (242)
Q Consensus 207 Issh~Dl 213 (242)
+....++
T Consensus 137 v~~~~~~ 143 (183)
T PRK09484 137 VADAHPL 143 (183)
T ss_pred cCChhHH
Confidence 5433333
No 64
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.03 E-value=0.73 Score=40.88 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCcc-hHHHHHHHHhhcCCcccc-Cccccc--cccChhH--HHHHHHHhhC-CCcE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQL-VPALAKVLLFGLGDIFQV-ENIYSS--TKIGKES--CFERIGTRFG-RKVT 183 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttqL-VPaLAK~LLygL~~~fpi-ENIYSa--~kiGKes--CFerI~~RFG-~k~t 183 (242)
|..-+.++++.+.++. + =.++|+... .|.......++++.+|.. +.+.+. ...||-+ -|+.+++++| ++-.
T Consensus 144 ~y~~i~~~l~~L~~~g-~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPG-C-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPAR 221 (279)
T ss_pred CHHHHHHHHHHHhcCC-C-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhh
Confidence 4556677777776543 3 367777666 442222345677777652 332222 2357765 7899999998 5567
Q ss_pred EEEEcCCH-HHHHHHHHcCCceeEecc
Q psy8471 184 YVVIGDGQ-DEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 184 yvvIGDG~-eEe~AAk~~~~PFwrIss 209 (242)
-++|||.. ---++|++.||++.-+..
T Consensus 222 ~lmIGD~~~tDI~~A~~aGi~si~V~~ 248 (279)
T TIGR01452 222 TLMVGDRLETDILFGHRCGMTTVLVLS 248 (279)
T ss_pred EEEECCChHHHHHHHHHcCCcEEEECC
Confidence 88899996 457799999999988865
No 65
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=87.97 E-value=0.62 Score=41.19 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccc-cCcccc--ccccChh--HHHHHHHHhhC-CCcEEEEEcC
Q psy8471 116 IKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQ-VENIYS--STKIGKE--SCFERIGTRFG-RKVTYVVIGD 189 (242)
Q Consensus 116 ~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fp-iENIYS--a~kiGKe--sCFerI~~RFG-~k~tyvvIGD 189 (242)
.+++..+..+. ..-+++|+............++++.+|. |+..-+ ..-.||- ..|+.+.+++| +.-..++|||
T Consensus 126 ~~a~~~L~~~~-~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD 204 (257)
T TIGR01458 126 NQAFRLLLDGA-KPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGD 204 (257)
T ss_pred HHHHHHHHcCC-CCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECC
Confidence 33444443332 2334555554443333334567777774 222111 1113654 48999999998 5577899999
Q ss_pred CH-HHHHHHHHcCCceeEecc
Q psy8471 190 GQ-DEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 190 G~-eEe~AAk~~~~PFwrIss 209 (242)
.. ..-.+|++.+|+.+-|..
T Consensus 205 ~~~~Di~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 205 DCRDDVGGAQDCGMRGIQVRT 225 (257)
T ss_pred CcHHHHHHHHHcCCeEEEECC
Confidence 96 567799999999999965
No 66
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=87.26 E-value=9.1 Score=30.38 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccCCCCCCChhhHHH---HHHHH-HHHhh--hhhh--HHHHHHHHHHHHhhCCcceEE
Q psy8471 60 GVDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQ---WLQLR-AEIES--TTDN--WLSLAIKCLNIINSRSTCTNV 131 (242)
Q Consensus 60 gvdwmRKLAfRyrrIke~Y~~yk~~v~gLL~~~kr~~---w~~lr-~e~e~--~Td~--WLs~A~k~L~~i~sR~~~vNV 131 (242)
..+|+++++.+-..+.++...|+.|--.+... -+.. |..++ .++.. +.+. +..-+..+++.+.++. ..=+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g-~~~~ 93 (177)
T TIGR01488 16 LIDLLAKLLGTNDEVIELTRLAPSGRISFEDA-LGRRLALLHRSRSEEVAKEFLARQVALRPGARELISWLKERG-IDTV 93 (177)
T ss_pred hHHHHHHHhCChHHHHHHHHHHHCCCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHhcCCcCcCHHHHHHHHHHCC-CEEE
Confidence 46788888865556666666666532222110 1111 11111 11111 0110 1234556666665543 3344
Q ss_pred EEcCCcchHHHHHHH-HhhcCCccc----c-Cc-cc--------cccccChhHHHHHHHHhhCC-CcEEEEEcCCHHHHH
Q psy8471 132 IVTCTQLVPALAKVL-LFGLGDIFQ----V-EN-IY--------SSTKIGKESCFERIGTRFGR-KVTYVVIGDGQDEEA 195 (242)
Q Consensus 132 LVTttqLVPaLAK~L-LygL~~~fp----i-EN-IY--------Sa~kiGKesCFerI~~RFG~-k~tyvvIGDG~eEe~ 195 (242)
+||++ .-+.+.+++ -+++..+|- . +| ++ .....+|....+++.++.|- .-.-++||||..--.
T Consensus 94 ivS~~-~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~ 172 (177)
T TIGR01488 94 IVSGG-FDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEESKITLKKIIAVGDSVNDLP 172 (177)
T ss_pred EECCC-cHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHH
Confidence 55554 333332222 135554432 1 11 11 12335688899999888863 335688999987777
Q ss_pred HHHH
Q psy8471 196 AAKQ 199 (242)
Q Consensus 196 AAk~ 199 (242)
+++.
T Consensus 173 ~~~~ 176 (177)
T TIGR01488 173 MLKL 176 (177)
T ss_pred HHhc
Confidence 6653
No 67
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=86.95 E-value=2.4 Score=36.00 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=61.4
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.++|+..--..-..+=-+++..+|.. .| .|...|+.+.+++|- .-.-++|||+.---++++..+++|-.-++
T Consensus 54 aIiT~k~~~~~~~~l~~lgi~~~f~~------~k-pkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA 126 (169)
T TIGR02726 54 AIITSKKSGAVRHRAEELKIKRFHEG------IK-KKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126 (169)
T ss_pred EEEECCCcHHHHHHHHHCCCcEEEec------CC-CCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCc
Confidence 35666655444444445577777752 23 788999999999984 35678999999999999999999999999
Q ss_pred cccHHHHH
Q psy8471 210 HSDLAALY 217 (242)
Q Consensus 210 h~Dl~~L~ 217 (242)
++++.++-
T Consensus 127 ~~~lk~~A 134 (169)
T TIGR02726 127 VADVKEAA 134 (169)
T ss_pred hHHHHHhC
Confidence 99887663
No 68
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=85.07 E-value=5.9 Score=36.96 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCc--chHHHHHHHHhhcCCccc----cC-ccc-----c--ccccChhHHHHHHHHhh
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQ--LVPALAKVLLFGLGDIFQ----VE-NIY-----S--STKIGKESCFERIGTRF 178 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttq--LVPaLAK~LLygL~~~fp----iE-NIY-----S--a~kiGKesCFerI~~RF 178 (242)
.-+.++++.+.++ +.--++||++. ++..+.+- ++++.+|. ++ ... + ....+|..+++++.+++
T Consensus 184 pGa~elL~~Lk~~-G~~~aIvSgg~~~~~~~l~~~--Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 184 PGLTELVLKLQAL-GWKVAIASGGFTYFADYLRDK--LRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred hhHHHHHHHHHHc-CCEEEEEECCcchhHHHHHHH--cCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 3445566655542 23334566553 34444442 36655443 11 111 1 11247999999999999
Q ss_pred C-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHH
Q psy8471 179 G-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAA 215 (242)
Q Consensus 179 G-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~ 215 (242)
| +.-.=++||||..--.+++.-++++-- +..|.+.+
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~ 297 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNE 297 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHh
Confidence 8 445567889999999999999998875 66666654
No 69
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=84.44 E-value=16 Score=31.26 Aligned_cols=97 Identities=22% Similarity=0.171 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcC--CcchHHHHHHHHhhcCCccccCccccccccCh--hHHHHHHHHhhCCCc-EEE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTC--TQLVPALAKVLLFGLGDIFQVENIYSSTKIGK--ESCFERIGTRFGRKV-TYV 185 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTt--tqLVPaLAK~LLygL~~~fpiENIYSa~kiGK--esCFerI~~RFG~k~-tyv 185 (242)
+..-+...|..+.++. .-..+||+ ...+..+.|- +||+.+|..-=.++.....| -.=...+.+++|.+- +=+
T Consensus 90 ~~~gv~e~L~~L~~~g-~~l~i~T~k~~~~~~~~l~~--~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 90 LFPGVKELLAALKSAG-YKLGIVTNKPERELDILLKA--LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCCCHHHHHHHHHhCC-CeEEEEeCCcHHHHHHHHHH--hCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4666677777777765 56667775 3344444333 89999998744454444444 345667889998773 579
Q ss_pred EEcCCHHHHHHHHHcCCceeEeccc
Q psy8471 186 VIGDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 186 vIGDG~eEe~AAk~~~~PFwrIssh 210 (242)
.|||....-+|||+.|+|+.-+...
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g 191 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWG 191 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999998877763
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=84.44 E-value=14 Score=30.25 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCcccc-----C-cccccc-------ccChhHHHHHHHH
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQV-----E-NIYSST-------KIGKESCFERIGT 176 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpi-----E-NIYSa~-------kiGKesCFerI~~ 176 (242)
+...+.+.++...++ ...|.|-|+..-+.+..++ .+++..+|.. + ++|+.. ..+|....+++.+
T Consensus 88 ~~~~~~~~l~~l~~~--g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 88 LYPEARDLIRWHKAE--GHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred ccHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 344555665554433 3444444444444333332 2466666654 2 234321 1246666888888
Q ss_pred hhCCC-cEEEEEcCCHHHHHHHHHcCCceeEe
Q psy8471 177 RFGRK-VTYVVIGDGQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 177 RFG~k-~tyvvIGDG~eEe~AAk~~~~PFwrI 207 (242)
+.|-. -.-++|||+...-.+++..+.|++..
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 88754 24467899999999999999999865
No 71
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=82.77 E-value=1.5 Score=35.03 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=46.7
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccC--h--hHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHH
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--K--ESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQ 199 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--K--esCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~ 199 (242)
.++|++.---.-.++=-++|..+| +.|+|+-.+| | ..+|+++.+|+| +.-.-++|||..---+|||+
T Consensus 103 ~i~Tn~~~~~~~~~l~~~~l~~~f--d~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 103 AILSNASHWAFDQFAQQAGLPWYF--DRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred hhhhCCCHHHHHHHHHHCCCHHHH--hhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHHHhc
Confidence 477777543333333335666666 4588887654 4 779999999998 44667889999776778875
No 72
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=81.62 E-value=8.5 Score=36.75 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 166 GKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 166 GKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.|..+|..+.++.+ ..-.-++|||+.-.-+||+..+|+|.-|+.
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 35568999999886 446677789999999999999999999955
No 73
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=1 Score=37.09 Aligned_cols=40 Identities=33% Similarity=0.581 Sum_probs=34.3
Q ss_pred HHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhch
Q psy8471 174 IGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 174 I~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~ 224 (242)
|.-|--++++|||=|.. ++| |...|.|.|.+||++|++.+
T Consensus 72 ievRk~pd~~fvvrGs~----------~ip-WQ~KSLpNLkkLhP~l~L~~ 111 (112)
T COG5439 72 IEVRKKPDTSFVVRGSK----------NIP-WQMKSLPNLKKLHPDLTLEF 111 (112)
T ss_pred hhhhcCCCceEEEecCC----------CCc-chhccccchHhhCCCceEee
Confidence 45566789999999976 576 89999999999999998875
No 74
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=80.31 E-value=56 Score=31.52 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHhh-cccCCCCCCChhhHHHHHHHHHH----------HhhhhhhHHHHHHHHHHHHhhCC--cceEEEEcCCcchH
Q psy8471 74 IKDTYNN-YRNSVGGLLGPTKREQWLQLRAE----------IESTTDNWLSLAIKCLNIINSRS--TCTNVIVTCTQLVP 140 (242)
Q Consensus 74 Ike~Y~~-yk~~v~gLL~~~kr~~w~~lr~e----------~e~~Td~WLs~A~k~L~~i~sR~--~~vNVLVTttqLVP 140 (242)
+++.|.. |-. ..++|...-+.|+.--++ ++.+-+.+-..+...|+....+- +.+ ++.+-+...-
T Consensus 263 L~e~~GiP~~~--~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv-~i~~g~~~~~ 339 (456)
T TIGR01283 263 MEEKYGIPYFE--GSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKA-AIYTGGVKSW 339 (456)
T ss_pred HHHHcCCCEEe--cCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEcCCchHH
Confidence 3455544 332 235787777777743322 33333333344444554443332 223 4567777888
Q ss_pred HHHHHHHhhcCCccccCccccccccC-hhHHHHHHHHhhCCCcEE-------------------EEEcCCHHHHHHHHHc
Q psy8471 141 ALAKVLLFGLGDIFQVENIYSSTKIG-KESCFERIGTRFGRKVTY-------------------VVIGDGQDEEAAAKQN 200 (242)
Q Consensus 141 aLAK~LLygL~~~fpiENIYSa~kiG-KesCFerI~~RFG~k~ty-------------------vvIGDG~eEe~AAk~~ 200 (242)
++++.| -.||--+..= .+..+ .+. .++|.++.+..+.. ++||.. .|...|+++
T Consensus 340 ~l~~~l-~elGmevv~~----~t~~~~~~d-~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~-~~~~~a~k~ 412 (456)
T TIGR01283 340 SLVSAL-QDLGMEVVAT----GTQKGTEED-YARIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAGG-KERYTALKL 412 (456)
T ss_pred HHHHHH-HHCCCEEEEE----eeecCCHHH-HHHHHHHcCCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc-chHHHHHhc
Confidence 999975 5788765542 22222 232 67777776544322 345554 456677889
Q ss_pred CCceeEec
Q psy8471 201 NFPFWRVS 208 (242)
Q Consensus 201 ~~PFwrIs 208 (242)
++||.+++
T Consensus 413 giP~i~~~ 420 (456)
T TIGR01283 413 GIPFCDIN 420 (456)
T ss_pred CCCEEEcc
Confidence 99998875
No 75
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=79.77 E-value=9.1 Score=31.24 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=55.0
Q ss_pred HHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHH
Q psy8471 118 CLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAA 196 (242)
Q Consensus 118 ~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~A 196 (242)
+++.+.++ +..=++||+..--.....+=-+|+..+| ... ..|..-++++.+++| ..-.-++|||+.---++
T Consensus 36 ~i~~Lk~~-G~~i~IvTn~~~~~~~~~l~~~gi~~~~------~~~-~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~ 107 (154)
T TIGR01670 36 GIRCALKS-GIEVAIITGRKAKLVEDRCKTLGITHLY------QGQ-SNKLIAFSDILEKLALAPENVAYIGDDLIDWPV 107 (154)
T ss_pred HHHHHHHC-CCEEEEEECCCCHHHHHHHHHcCCCEEE------ecc-cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHH
Confidence 44444433 3444567776654332222133444444 333 479999999999998 44667889999999999
Q ss_pred HHHcCCceeEecccc
Q psy8471 197 AKQNNFPFWRVSSHS 211 (242)
Q Consensus 197 Ak~~~~PFwrIssh~ 211 (242)
++..+++|---..++
T Consensus 108 ~~~ag~~~~v~~~~~ 122 (154)
T TIGR01670 108 MEKVGLSVAVADAHP 122 (154)
T ss_pred HHHCCCeEecCCcCH
Confidence 999999944334443
No 76
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=79.65 E-value=19 Score=32.49 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCcceEEEEcCCc--chHHHHHHHH--hhc--CCccccCccccccccChhHHHHHHHHhhCCCcEEEEEc
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQ--LVPALAKVLL--FGL--GDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIG 188 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttq--LVPaLAK~LL--ygL--~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIG 188 (242)
|.++|+.+.+|. .-=++||+.. .--..++-|+ +|+ ..+|++ +++.....|+.=.++++ +.|- =+.||
T Consensus 119 a~elL~~L~~~G-~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v--il~gd~~~K~~K~~~l~-~~~i---~I~IG 191 (237)
T PRK11009 119 ARQLIDMHVKRG-DSIYFITGRTATKTETVSKTLADDFHIPADNMNPV--IFAGDKPGQYTKTQWLK-KKNI---RIFYG 191 (237)
T ss_pred HHHHHHHHHHCC-CeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE--EEcCCCCCCCCHHHHHH-hcCC---eEEEc
Confidence 677777776654 2334567642 3333444444 888 777764 55555333333333443 4553 35699
Q ss_pred CCHHHHHHHHHcCCceeEeccc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIssh 210 (242)
|...--+|||..++++.++.--
T Consensus 192 Ds~~Di~aA~~AGi~~I~v~~G 213 (237)
T PRK11009 192 DSDNDITAAREAGARGIRILRA 213 (237)
T ss_pred CCHHHHHHHHHcCCcEEEEecC
Confidence 9999999999999999998653
No 77
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=79.10 E-value=4.1 Score=35.25 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCcccc-Cccccc--cccCh--hHHHHHHHHhhCC--CcEEE
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQV-ENIYSS--TKIGK--ESCFERIGTRFGR--KVTYV 185 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpi-ENIYSa--~kiGK--esCFerI~~RFG~--k~tyv 185 (242)
.-..++|..+..|. +..++|+....-.-.-...++.+.+|.. +. ++. ...|| ...|+.+.+++|- +-.-+
T Consensus 141 ~~~~~~l~~l~~~g--~~~i~tN~d~~~~~~~~~~~~~g~~~~~i~~-~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 141 DEFDELFAPIVARK--IPNICANPDRGINQHGIYRYGAGYYAELIKQ-LGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHhCC--CcEEEECCCEeccCCCceEecccHHHHHHHH-hCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 34455555544332 3357787655433334566777777763 22 232 23576 5689999999973 34688
Q ss_pred EEcCCH-HHHHHHHHcCCceeEec
Q psy8471 186 VIGDGQ-DEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 186 vIGDG~-eEe~AAk~~~~PFwrIs 208 (242)
+|||.. -.-.+|++.+|++.-+.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 999995 56779999999987653
No 78
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=78.22 E-value=8.2 Score=29.83 Aligned_cols=74 Identities=26% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchH--HHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcC
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVP--ALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGD 189 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVP--aLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGD 189 (242)
+.-|..+++.+..+... =++||+..--+ .+++-| -.+|--++-++|+++... .=+.++++++.+-.||+-.+
T Consensus 16 ipga~e~l~~L~~~g~~-~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~----~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 16 IPGAVEALDALRERGKP-VVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMA----AAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp -TTHHHHHHHHHHTTSE-EEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHH----HHHHHHHHTTSSEEEEES-H
T ss_pred CcCHHHHHHHHHHcCCC-EEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHH----HHHHHHhcCCCCEEEEEcCH
Confidence 45577788888777444 46778776555 566666 677777888999999864 45677777877777887766
Q ss_pred CH
Q psy8471 190 GQ 191 (242)
Q Consensus 190 G~ 191 (242)
+-
T Consensus 90 ~l 91 (101)
T PF13344_consen 90 GL 91 (101)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.57 E-value=27 Score=30.74 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCC-ccccCcccccc-------c--cChh--HHHHHHHHhhC
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGD-IFQVENIYSST-------K--IGKE--SCFERIGTRFG 179 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~-~fpiENIYSa~-------k--iGKe--sCFerI~~RFG 179 (242)
..+...+....++ ..-=++||+..-... .++| -+++.+ +| +-|+++. + .+|- .-.+.+.++.|
T Consensus 190 ~~~~~~l~~l~~~-g~~i~i~T~r~~~~~-~~~l~~l~~~~~~f--~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 190 PMVVELVKMYKAA-GYEIIVVSGRDGVCE-EDTVEWLRQTDIWF--DDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred hhHHHHHHHHHhC-CCEEEEEeCCChhhH-HHHHHHHHHcCCch--hhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 3445666666555 445567777655432 1221 134443 44 3344443 1 2232 24444445556
Q ss_pred CC--cEEEEEcCCHHHHHHHHHcCCceeEec
Q psy8471 180 RK--VTYVVIGDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 180 ~k--~tyvvIGDG~eEe~AAk~~~~PFwrIs 208 (242)
.+ -.-++|||....-+||+..|+|++-+.
T Consensus 266 ~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 266 APKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred ccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 53 778899999999999999999999884
No 80
>PLN02645 phosphoglycolate phosphatase
Probab=77.23 E-value=3.9 Score=37.17 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=54.3
Q ss_pred ceEEEEcCCcch-HHHHHHHHhhcCCccccCccccccc-----cChh--HHHHHHHHhhC-CCcEEEEEcCCH-HHHHHH
Q psy8471 128 CTNVIVTCTQLV-PALAKVLLFGLGDIFQVENIYSSTK-----IGKE--SCFERIGTRFG-RKVTYVVIGDGQ-DEEAAA 197 (242)
Q Consensus 128 ~vNVLVTttqLV-PaLAK~LLygL~~~fpiENIYSa~k-----iGKe--sCFerI~~RFG-~k~tyvvIGDG~-eEe~AA 197 (242)
-+=.++|+...+ |.-.....+|.|.+|.. |+.++. +||- ..|+.+.+++| ++-.-++|||.. -.-++|
T Consensus 187 g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~--i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A 264 (311)
T PLN02645 187 GCLFIATNRDAVTHLTDAQEWAGAGSMVGA--IKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFG 264 (311)
T ss_pred CCEEEEeCCCCCCCCCCCCCccchHHHHHH--HHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHH
Confidence 356677777663 22112244577776642 222222 3654 58999999997 567899999997 567799
Q ss_pred HHcCCceeEecc
Q psy8471 198 KQNNFPFWRVSS 209 (242)
Q Consensus 198 k~~~~PFwrIss 209 (242)
++.+|++.-|.+
T Consensus 265 ~~aG~~~ilV~~ 276 (311)
T PLN02645 265 QNGGCKTLLVLS 276 (311)
T ss_pred HHcCCCEEEEcC
Confidence 999999988854
No 81
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=76.62 E-value=24 Score=28.95 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCcccc-----Cc--cccccc---cChhHHHHHHHHhhCCCcE
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQV-----EN--IYSSTK---IGKESCFERIGTRFGRKVT 183 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpi-----EN--IYSa~k---iGKesCFerI~~RFG~k~t 183 (242)
+..+|+.+.++ + .+.|.|+..-...-++| -+++..+|.. +| +.+..+ -+|..+.+++... + ..
T Consensus 73 ~~e~L~~L~~~--~-~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~-~--~~ 146 (205)
T PRK13582 73 AVEFLDWLRER--F-QVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL-G--YR 146 (205)
T ss_pred HHHHHHHHHhc--C-CEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh-C--Ce
Confidence 45666666665 2 34444555554443332 2456555532 12 222221 2455565554432 2 34
Q ss_pred EEEEcCCHHHHHHHHHcCCcee
Q psy8471 184 YVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 184 yvvIGDG~eEe~AAk~~~~PFw 205 (242)
=++|||+.---++|+..+++.+
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEE
Confidence 4788999888889999998875
No 82
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=74.36 E-value=6.4 Score=32.99 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=59.1
Q ss_pred EEEcCCcchHHHHHHHHhhcCCcccc-Cc--cccccccChhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQV-EN--IYSSTKIGKESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpi-EN--IYSa~kiGKesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
+++.+..-...+.+.|=. ++-.+.. .. --++..+.|.+..+++.+++|-+ -..++|||+.--.+..+..+++|--
T Consensus 110 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam 188 (215)
T TIGR01487 110 VIMREGKDVDEVREIIKE-RGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAV 188 (215)
T ss_pred EEecCCccHHHHHHHHHh-CCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEc
Confidence 344455555666665532 2211110 11 12345678999999999999844 4678999999999999999999988
Q ss_pred ecccccHHHH
Q psy8471 207 VSSHSDLAAL 216 (242)
Q Consensus 207 Issh~Dl~~L 216 (242)
-+.++.+.+.
T Consensus 189 ~na~~~~k~~ 198 (215)
T TIGR01487 189 ANADDQLKEI 198 (215)
T ss_pred CCccHHHHHh
Confidence 8888877775
No 83
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=73.59 E-value=23 Score=29.97 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 170 CFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 170 CFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
|..++.++++ ++-.-++||||.---+||+..+++|-|
T Consensus 148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~ 185 (219)
T PRK09552 148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR 185 (219)
T ss_pred chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH
Confidence 4556777774 333567899999999999999998773
No 84
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=71.19 E-value=27 Score=33.03 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCcc---ccCccc
Q psy8471 84 SVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIF---QVENIY 160 (242)
Q Consensus 84 ~v~gLL~~~kr~~w~~lr~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~f---piENIY 160 (242)
..+|+-...-.+.+.+++. +.+..-.+++.++..-.+.-.++|.+|..||-+|=.|+ |.--+| +--|.|
T Consensus 56 ~sgg~~~~~~~~~~~~~~~-------gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~-~~p~~~~~~~esn~~ 127 (396)
T TIGR03492 56 PSGGFSYQSLRGLLRDLRA-------GLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLS-GKPYAFVGTAKSDYY 127 (396)
T ss_pred CCCCccCCCHHHHHHHHHh-------hHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHc-CCCceEEEeecccee
Confidence 3455544444444545554 45555666666666555567799999999988777554 888888 888988
Q ss_pred --cccccChhHHHHHH--H-------Hhh-CCCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 161 --SSTKIGKESCFERI--G-------TRF-GRKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 161 --Sa~kiGKesCFerI--~-------~RF-G~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
|-+-.+..+|+++. . .|. .+.|..|.+.|. ++++--++.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~~~~-~t~~~l~~~g~k~~ 183 (396)
T TIGR03492 128 WESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDR-LTARDLRRQGVRAS 183 (396)
T ss_pred ecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeCCCH-HHHHHHHHCCCeEE
Confidence 33334566677766 2 355 788999999995 45555556666543
No 85
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=70.51 E-value=58 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=16.7
Q ss_pred EEcCCHHHHHHHHHcCCceeEeccc
Q psy8471 186 VIGDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 186 vIGDG~eEe~AAk~~~~PFwrIssh 210 (242)
+||... |...|+++++||.+++..
T Consensus 388 lig~s~-~~~~A~klgip~~~~g~P 411 (457)
T TIGR02932 388 IMGHSK-GRYVAIDANIPMVRVGFP 411 (457)
T ss_pred EEECCc-hHHHHHHcCCCEEEecCC
Confidence 444443 466777899999999753
No 86
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=70.30 E-value=7.5 Score=32.04 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=35.5
Q ss_pred ccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCce
Q psy8471 164 KIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 164 kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PF 204 (242)
.+.|....+.+.+++| .+-.-++|||+.--+.+++..++++
T Consensus 161 ~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 161 GVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 4689999999999998 4456789999999999999988876
No 87
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.84 E-value=11 Score=34.76 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHH-H---HHHHHcCCceeE---------------ecccccHHHHHHhhhhchh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDE-E---AAAKQNNFPFWR---------------VSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eE-e---~AAk~~~~PFwr---------------Issh~Dl~~L~~AL~~~~l 225 (242)
..|+++.++ .+++.++++|||.+. + +-++++++.+.. +....|+..+|.+.+.-|+
T Consensus 251 ~A~~~l~~~-~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v 325 (425)
T PRK05749 251 DAHRALLKQ-FPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFV 325 (425)
T ss_pred HHHHHHHHh-CCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEE
Confidence 445555555 478999999999764 2 244566765433 2334589999999988776
No 88
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=69.63 E-value=4.2 Score=30.62 Aligned_cols=66 Identities=26% Similarity=0.488 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhchhhh--hhchhhhhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFLIV--EEGLVGTLAEW 238 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l~~--~~~~~~~~~~~ 238 (242)
+++++.+++ ++++++++|.+.++-.....-++-|+.-- +++..+.++.+...+.. .+++-.++.|.
T Consensus 24 ~~~~l~~~~-p~~~l~i~G~~~~~l~~~~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~ 91 (135)
T PF13692_consen 24 ALERLKEKH-PDIELIIIGNGPDELKRLRRPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEA 91 (135)
T ss_dssp HHHHHHHHS-TTEEEEEECESS-HHCCHHHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHH
T ss_pred HHHHHHHHC-cCEEEEEEeCCHHHHHHhcCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHH
Confidence 777888888 88999999999774111113355555443 67888888877777644 23444455443
No 89
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=69.60 E-value=47 Score=28.66 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHHHHhhCCcceEEEEcCCcchHHHHHHHH--hhcC----------CccccCccccccccChhHHHHHHHHhhC-CCcE
Q psy8471 117 KCLNIINSRSTCTNVIVTCTQLVPALAKVLL--FGLG----------DIFQVENIYSSTKIGKESCFERIGTRFG-RKVT 183 (242)
Q Consensus 117 k~L~~i~sR~~~vNVLVTttqLVPaLAK~LL--ygL~----------~~fpiENIYSa~kiGKesCFerI~~RFG-~k~t 183 (242)
..|..+.+ +.+-+-|-|..=-|..||=+| +++. .+|.-.-||.. .|-+=|++|.++-| +--.
T Consensus 52 ~iL~~L~~--~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~e 126 (169)
T PF12689_consen 52 EILQELKE--RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG---SKTTHFRRIHRKTGIPYEE 126 (169)
T ss_dssp HHHHHHHH--CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS----HHHHHHHHHHHH---GGG
T ss_pred HHHHHHHH--CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC---chHHHHHHHHHhcCCChhH
Confidence 34444433 556666666666788888775 5666 77888888886 57889999999998 5567
Q ss_pred EEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 184 YVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 184 yvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
.+-.=|-.-..+..+++|.-|+.+..--....+..+|+
T Consensus 127 MlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~ 164 (169)
T PF12689_consen 127 MLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLE 164 (169)
T ss_dssp EEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHH
T ss_pred EEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHH
Confidence 77788877777888889999999988666676666664
No 90
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=69.33 E-value=15 Score=31.24 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc--eeEecccccHHHHHHhhhh
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP--FWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P--FwrIssh~Dl~~L~~AL~~ 222 (242)
..+|+++.++. +++.++++|+|.++++ .++.++.+ +.-+...+|+..++.+-+.
T Consensus 207 i~a~~~l~~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 265 (360)
T cd04951 207 LKAFAKLLSDY-LDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADL 265 (360)
T ss_pred HHHHHHHHhhC-CCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhce
Confidence 45555555544 7899999999986544 34455543 4445567888888888776
No 91
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=68.23 E-value=30 Score=27.86 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccc--ccChhHHHHHHHHhhC-CCcEEEEEc
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSST--KIGKESCFERIGTRFG-RKVTYVVIG 188 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~--kiGKesCFerI~~RFG-~k~tyvvIG 188 (242)
...+..+|..+.++. .--+++|......+-+..-..|+.. .+||+-. |- ....|.+|+++.+ +.-.=++||
T Consensus 129 ~~~~~~~l~~L~~~G-i~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP-~~k~~~~~i~~l~~~~~~v~~vG 202 (215)
T PF00702_consen 129 RPGAKEALQELKEAG-IKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKP-EPKIFLRIIKELQVKPGEVAMVG 202 (215)
T ss_dssp HTTHHHHHHHHHHTT-EEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTT-HHHHHHHHHHHHTCTGGGEEEEE
T ss_pred hhhhhhhhhhhhccC-cceeeeecccccccccccccccccc----ccccccccccc-cchhHHHHHHHHhcCCCEEEEEc
Confidence 345666666665553 2456778777766666666667633 2244444 32 1238999999998 556788999
Q ss_pred CCHHHHHHHHHc
Q psy8471 189 DGQDEEAAAKQN 200 (242)
Q Consensus 189 DG~eEe~AAk~~ 200 (242)
||.---.|+|+.
T Consensus 203 Dg~nD~~al~~A 214 (215)
T PF00702_consen 203 DGVNDAPALKAA 214 (215)
T ss_dssp SSGGHHHHHHHS
T ss_pred cCHHHHHHHHhC
Confidence 999888888875
No 92
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=68.09 E-value=18 Score=31.98 Aligned_cols=69 Identities=26% Similarity=0.498 Sum_probs=43.0
Q ss_pred HHHHHHHHhhC---CCcEEEEEcCCHHHHH---HHHHcCCc--eeEecccccHHHHHHhhhhchh-hhhhchhhhhhh
Q psy8471 169 SCFERIGTRFG---RKVTYVVIGDGQDEEA---AAKQNNFP--FWRVSSHSDLAALYNALDMGFL-IVEEGLVGTLAE 237 (242)
Q Consensus 169 sCFerI~~RFG---~k~tyvvIGDG~eEe~---AAk~~~~P--FwrIssh~Dl~~L~~AL~~~~l-~~~~~~~~~~~~ 237 (242)
..|+.+.++.. ++++++++|||.++++ .++.++++ ++-.....|+..++.+.+.-.+ ...||+-.++.|
T Consensus 214 ~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lE 291 (374)
T TIGR03088 214 RAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILE 291 (374)
T ss_pred HHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHH
Confidence 45566666653 3799999999975433 45566665 4444567899999988876332 223444334433
No 93
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=67.98 E-value=1.3e+02 Score=29.54 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=41.4
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHH---HHHhhCCCcEEEEEcCCHH---------------
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFER---IGTRFGRKVTYVVIGDGQD--------------- 192 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFer---I~~RFG~k~tyvvIGDG~e--------------- 192 (242)
+|+.-..++-++++.|. .||--+-. +...++-+++...++ +.++.+.++.-++.+|..|
T Consensus 309 ~i~g~~~~~~~l~~fl~-elGm~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dli 385 (454)
T cd01973 309 AIFGHPDLVIGLAEFCL-EVEMKPVL--LLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLI 385 (454)
T ss_pred EEEcCHHHHHHHHHHHH-HCCCeEEE--EEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEE
Confidence 45556678999999998 65544322 223333333323222 2223333333333334433
Q ss_pred -----HHHHHHHcCCceeEecc
Q psy8471 193 -----EEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 193 -----Ee~AAk~~~~PFwrIss 209 (242)
|..+|+++++||.+++.
T Consensus 386 ig~s~~~~~A~~~gip~~~~g~ 407 (454)
T cd01973 386 LGHSKGRYIAIDNNIPMVRVGF 407 (454)
T ss_pred EECCccHHHHHHcCCCEEEecC
Confidence 34568889999999874
No 94
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=67.52 E-value=10 Score=31.68 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=44.6
Q ss_pred cChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 165 IGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 165 iGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
+.|..-.+++.+++| .+-.-++|||+.--.+.++..+++|.--+.++.+.+.
T Consensus 156 ~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~ 208 (230)
T PRK01158 156 VNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEA 208 (230)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHh
Confidence 559999999999998 4467899999999999999999999877777777653
No 95
>KOG3107|consensus
Probab=67.47 E-value=20 Score=35.92 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=101.2
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccchhhhHHHHHHHHHHHHHHHhhcccCC
Q psy8471 6 HIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGGVDWMRKLAFRYRKIKDTYNNYRNSV 85 (242)
Q Consensus 6 hiddvs~dDnGqDLs~y~f~~dgf~~~~~~~~~~~~~~~~~~~~~lc~~~~vrggvdwmRKLAfRyrrIke~Y~~yk~~v 85 (242)
.+|++-.||--+|=..-+.++-.|.++.- +++ ++ -.-+|+.|++...+.+++ +.
T Consensus 256 ecdq~~vDdvs~dDngqdLs~y~f~~d~f-------------sa~-------~~---~~~~l~~~~~v~g~vd~m---r~ 309 (468)
T KOG3107|consen 256 ECDQVHVDDVSSDDNGQDLSTYNFVTDGF-------------SAF-------TA---FSANLCLKTGVRGGVDWM---RK 309 (468)
T ss_pred hhcccccccccccCCcccccceeeccCCC-------------cCc-------Cc---cccccccccccchhhhhh---hc
Confidence 56778888866664444444455555444 111 11 133899999999999988 33
Q ss_pred CCCCChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCcccccccc
Q psy8471 86 GGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI 165 (242)
Q Consensus 86 ~gLL~~~kr~~w~~lr~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki 165 (242)
-.+.-.+-||..+..++.++.+|+.|+..|..+|..+. -|++ ++|-.
T Consensus 310 laFr~re~~e~~~~y~nnv~~l~~p~~~eaw~~lr~~~------ev~t---------------------------dsw~t 356 (468)
T KOG3107|consen 310 LAFRYREVKEIYNTYKNNVGGLTGPNKREAWLQLRAEI------EVLT---------------------------DSWLT 356 (468)
T ss_pred cchhhHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHH------HHhh---------------------------hhhhh
Confidence 44445557788889999999999999999988876432 2221 23444
Q ss_pred ChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhchhh
Q psy8471 166 GKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFLI 226 (242)
Q Consensus 166 GKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l~ 226 (242)
-++.|-..|.+| ++|.=|+|..+.==-.+||.|=. ++.+-=-++..|.|-..|-+.
T Consensus 357 saLka~s~i~sr--~ncvnVlvTttqLipalaKvLL~---gLg~~fpiENIYSa~kiGKes 412 (468)
T KOG3107|consen 357 SALKALSLISSR--KNCVNVLVTTTQLIPALAKVLLY---GLGSSFPIENIYSATKIGKES 412 (468)
T ss_pred hHHHHHhhhhcc--cceeEEEEeccchhHHHHHHHHH---hcCCcccchhhhhhhhccHHH
Confidence 566777777777 78999999888777777887632 222222234555555555543
No 96
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=67.28 E-value=20 Score=30.76 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc--eeEecccccHHHHHHhhhhch
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP--FWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P--FwrIssh~Dl~~L~~AL~~~~ 224 (242)
...|..++++ ++++++++||+|.+++. .+++++++ +.-+..+.++..++...+.-.
T Consensus 211 i~a~~~l~~~-~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v 271 (358)
T cd03812 211 IEIFAELLKK-NPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFL 271 (358)
T ss_pred HHHHHHHHHh-CCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEE
Confidence 3567777766 48999999999986644 45556664 333444778888888776544
No 97
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=66.26 E-value=23 Score=32.98 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=52.9
Q ss_pred ceEEEEcCCcchHHHHHHHHhhcCCcccc------Cccccccc-cC-hhHHHHHHHHhhCCCcEEEEEcCCHHH---HHH
Q psy8471 128 CTNVIVTCTQLVPALAKVLLFGLGDIFQV------ENIYSSTK-IG-KESCFERIGTRFGRKVTYVVIGDGQDE---EAA 196 (242)
Q Consensus 128 ~vNVLVTttqLVPaLAK~LLygL~~~fpi------ENIYSa~k-iG-KesCFerI~~RFG~k~tyvvIGDG~eE---e~A 196 (242)
-+-++||-.+|.|.+..-+.-+++- ..+ ++ -|-.+ +| =...|..+.+++-|.+.. |.||.-+. ..|
T Consensus 10 ~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~Pd~Vl-v~GD~~~~la~ala 86 (346)
T PF02350_consen 10 ELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDS-QSMAKSTGLAIIELADVLEREKPDAVL-VLGDRNEALAAALA 86 (346)
T ss_dssp EEEEEEECSS--CHHHHHHHHHTT---SEEEE--STT-S-HHHHHHHHHHHHHHHHHHHT-SEEE-EETTSHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhhCCC-CCCCccccccc-chHHHHHHHHHHHHHHHHHhcCCCEEE-EEcCCchHHHHHHH
Confidence 4678999999999999998877776 222 22 22122 23 257899999999887765 88999665 347
Q ss_pred HHHcCCceeEeccc
Q psy8471 197 AKQNNFPFWRVSSH 210 (242)
Q Consensus 197 Ak~~~~PFwrIssh 210 (242)
|..+++|+..|..-
T Consensus 87 A~~~~ipv~HieaG 100 (346)
T PF02350_consen 87 AFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHTT-EEEEES--
T ss_pred HHHhCCCEEEecCC
Confidence 89999999999764
No 98
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=65.98 E-value=20 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHhh--C-CCcEEEEEcCCHHHHHHH
Q psy8471 166 GKESCFERIGTRF--G-RKVTYVVIGDGQDEEAAA 197 (242)
Q Consensus 166 GKesCFerI~~RF--G-~k~tyvvIGDG~eEe~AA 197 (242)
||..+++++..+. + ..-..++||||.---.++
T Consensus 157 ~K~~~l~~~~~~~~~~~~~~~~~~iGDs~~D~~~l 191 (192)
T PF12710_consen 157 GKAEALKELYIRDEEDIDPDRVIAIGDSINDLPML 191 (192)
T ss_dssp HHHHHHHHHHHHHHHTHTCCEEEEEESSGGGHHHH
T ss_pred cHHHHHHHHHHHhhcCCCCCeEEEEECCHHHHHHh
Confidence 4999999993222 2 567789999997655444
No 99
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=65.50 E-value=19 Score=32.80 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHHH--HcCCceeEecccccHHHHHHhhhhchh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAAK--QNNFPFWRVSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AAk--~~~~PFwrIssh~Dl~~L~~AL~~~~l 225 (242)
.+|..|+++. +++++++||+|.+++..+. ..++-| ...-+|+..++.+.+.-.+
T Consensus 248 ~~~~~l~~~~-p~~~l~ivG~g~~~~~~~l~~~~~V~~--~G~v~~~~~~~~~adv~v~ 303 (397)
T TIGR03087 248 RVFPAVRARR-PAAEFYIVGAKPSPAVRALAALPGVTV--TGSVADVRPYLAHAAVAVA 303 (397)
T ss_pred HHHHHHHHHC-CCcEEEEECCCChHHHHHhccCCCeEE--eeecCCHHHHHHhCCEEEe
Confidence 4566777665 7899999999976543222 223222 2334688888877766543
No 100
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=63.94 E-value=1.5e+02 Score=28.81 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHhh-cccCCCCCCChhhHHHHHHHHHHH-hhhhhhHHHHHH-HHHHHH---hhCCcceE-EEEc
Q psy8471 62 DWMRKLAFRYRKIKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI-ESTTDNWLSLAI-KCLNII---NSRSTCTN-VIVT 134 (242)
Q Consensus 62 dwmRKLAfRyrrIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~-e~~Td~WLs~A~-k~L~~i---~sR~~~vN-VLVT 134 (242)
+|++.+| +.++|.|.. |- .+..++|...-+.|.+--+++ ..-...++...+ ++++.+ +.+-.-.- ++.+
T Consensus 243 ~~~~~~a---~~Lee~~giP~~-~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~ 318 (432)
T TIGR01285 243 ESMRRAA---SLLADRCGVPYI-VFPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKVAIAA 318 (432)
T ss_pred hhHHHHH---HHHHHHHCCCeE-ecCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 4665544 356777766 33 344567887778887544432 110111222222 122222 22222222 5566
Q ss_pred CCcchHHHHHHHHhhcCCccccCcccc-----------ccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCc
Q psy8471 135 CTQLVPALAKVLLFGLGDIFQVENIYS-----------STKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFP 203 (242)
Q Consensus 135 ttqLVPaLAK~LLygL~~~fpiENIYS-----------a~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~P 203 (242)
...++-+++|.|. .||--+..=-+.+ ...++...=++++..+.++. ++||... |...|+++++|
T Consensus 319 ~~~~~~~l~~~l~-elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~d---liig~s~-~k~~A~~l~ip 393 (432)
T TIGR01285 319 EPDLLAAWATFFT-SMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGAD---LLITNSH-GRALAQRLALP 393 (432)
T ss_pred CHHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCC---EEEECcc-hHHHHHHcCCC
Confidence 6778899999965 6775432211111 11123333445555555433 5667774 57799999999
Q ss_pred eeEecc
Q psy8471 204 FWRVSS 209 (242)
Q Consensus 204 FwrIss 209 (242)
|.|++.
T Consensus 394 ~ir~g~ 399 (432)
T TIGR01285 394 LVRAGF 399 (432)
T ss_pred EEEecC
Confidence 998887
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=62.49 E-value=20 Score=35.48 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCceeEecccccHHHHHHhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
..|..|+++. +++++++||||+++++ .|+++++...-..-..+...++++.+
T Consensus 248 ~a~~~l~~~~-~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~D 302 (462)
T PLN02846 248 KLLHKHQKEL-SGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYK 302 (462)
T ss_pred HHHHHHHhhC-CCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCC
Confidence 3455555444 5689999999988754 56677765322333445556777764
No 102
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=61.92 E-value=13 Score=29.52 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=36.6
Q ss_pred cchHHHHHHHHhh-c--CCc------cccCcccccccc-ChhHHHHHHHHhhCCCcEEEEEcCCHH
Q psy8471 137 QLVPALAKVLLFG-L--GDI------FQVENIYSSTKI-GKESCFERIGTRFGRKVTYVVIGDGQD 192 (242)
Q Consensus 137 qLVPaLAK~LLyg-L--~~~------fpiENIYSa~ki-GKesCFerI~~RFG~k~tyvvIGDG~e 192 (242)
||-|.|.+.|-.. + |++ .......++... .|..-.++|.+.| |+..||.|||..+
T Consensus 11 nly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f-P~~kfiLIGDsgq 75 (100)
T PF09949_consen 11 NLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF-PERKFILIGDSGQ 75 (100)
T ss_pred HHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC-CCCcEEEEeeCCC
Confidence 5666777766432 1 221 112233445554 7999999999999 8999999999753
No 103
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.29 E-value=33 Score=32.67 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHH------H-HHHHHHcCCc-eeEecccccHHHHHHhhhhchh-hhhhchhhhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQD------E-EAAAKQNNFP-FWRVSSHSDLAALYNALDMGFL-IVEEGLVGTLA 236 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~e------E-e~AAk~~~~P-FwrIssh~Dl~~L~~AL~~~~l-~~~~~~~~~~~ 236 (242)
.+|+.++++ ++++++++||+|.+ | ++-+++++.+ -+++-.+.|+..++.+.+.-.+ ..+||+--++.
T Consensus 313 ~a~~~l~~~-~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vl 388 (475)
T cd03813 313 RAAAIVRKK-IPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDVLVLTSISEGQPLVIL 388 (475)
T ss_pred HHHHHHHHh-CCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCEEEeCchhhcCChHHH
Confidence 466666666 68999999999932 2 2356667763 4454448899999988776554 33445433333
No 104
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=59.94 E-value=17 Score=30.17 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=44.9
Q ss_pred ccChhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 164 KIGKESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 164 kiGKesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
.++|-.-++++.+++|- .-.-++|||+.--.+..+..+++|--=+.++.+.+.
T Consensus 147 ~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~ 200 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEW 200 (225)
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHh
Confidence 46899999999999983 456789999999999999999998877777776654
No 105
>PRK10307 putative glycosyl transferase; Provisional
Probab=59.81 E-value=12 Score=34.08 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc---eeEecccccHHHHHHhhhhch
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP---FWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P---FwrIssh~Dl~~L~~AL~~~~ 224 (242)
.+|+++.+ .+++.+++||||.++++ .+++++.+ |.-.-++.++..++.+-+...
T Consensus 249 ~a~~~l~~--~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v 308 (412)
T PRK10307 249 DAARRLRD--RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHL 308 (412)
T ss_pred HHHHHhcc--CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeE
Confidence 34444432 36799999999986654 46666655 222224568888888877643
No 106
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=59.59 E-value=1.7e+02 Score=28.08 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.7
Q ss_pred EEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 185 VVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 185 vvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
++||+. -|...|++++.||.+++.
T Consensus 374 liig~s-~~~~~a~~~~ip~i~~~~ 397 (427)
T cd01971 374 IIFGSS-WERDLAKELGGKILEVSF 397 (427)
T ss_pred EEEech-HHHHHHHHcCCCeEEEeC
Confidence 677877 566788889999999994
No 107
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=59.36 E-value=12 Score=31.51 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHHH--------HHHcCCc----eeEe-cccccHHHHHHhhhhchh-hhhh--ch
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEAA--------AKQNNFP----FWRV-SSHSDLAALYNALDMGFL-IVEE--GL 231 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~A--------Ak~~~~P----FwrI-ssh~Dl~~L~~AL~~~~l-~~~~--~~ 231 (242)
..+|+.+.++ +++++++++|+|.++... +++++.+ |+.- -...|+..++.+-+.-.+ ...+ +.
T Consensus 204 l~a~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~ 282 (366)
T cd03822 204 LEALPLLVAK-HPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQ 282 (366)
T ss_pred HHHHHHHHhh-CCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccccccccc
Confidence 4567777777 689999999998765432 3455543 2211 234567777777655433 1233 44
Q ss_pred hhhhhh
Q psy8471 232 VGTLAE 237 (242)
Q Consensus 232 ~~~~~~ 237 (242)
-+++.|
T Consensus 283 ~~~~~E 288 (366)
T cd03822 283 SGVLAY 288 (366)
T ss_pred chHHHH
Confidence 444544
No 108
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=58.83 E-value=66 Score=27.22 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=24.3
Q ss_pred HHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeE
Q psy8471 171 FERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWR 206 (242)
Q Consensus 171 FerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwr 206 (242)
-.++.++++ +.-.-++||||.---.||+.-++-|-|
T Consensus 145 K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar 181 (214)
T TIGR03333 145 KPSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFAR 181 (214)
T ss_pred HHHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEeh
Confidence 334444442 222337899999999999999986654
No 109
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=58.63 E-value=19 Score=29.13 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=44.8
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCcccccccc--ChhHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHHcCCce
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKI--GKESCFERIGTRFGRK-VTYVVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~ki--GKesCFerI~~RFG~k-~tyvvIGDG~eEe~AAk~~~~PF 204 (242)
+++|++.---+-..+=.+++...| +..|++.-.+ +|.. |.+..+++|.+ -.-++|||...--+||+..+++.
T Consensus 64 ~I~Ts~~~~~~~~il~~l~~~~~~-f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 64 VVFTAGLRMYADPVLDLLDPKKYF-GYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEeCCcHHHHHHHHHHhCcCCCE-eeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEe
Confidence 455555433222222223443322 3556666554 4666 88889999854 66788999999999998877654
No 110
>PLN02275 transferase, transferring glycosyl groups
Probab=58.10 E-value=19 Score=32.81 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCHHHHH---HHHHcCCc---eeE-ecccccHHHHHHhhhhchh
Q psy8471 179 GRKVTYVVIGDGQDEEA---AAKQNNFP---FWR-VSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~---AAk~~~~P---Fwr-Issh~Dl~~L~~AL~~~~l 225 (242)
.+++.|++||||.++++ -+++++.. |.. --.+.|+..++.+.|.-.+
T Consensus 259 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~ 312 (371)
T PLN02275 259 YPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVS 312 (371)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEE
Confidence 36799999999987553 45566654 221 1258899999999887643
No 111
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.78 E-value=11 Score=31.61 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 167 KESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 167 KesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
++.+=..|.+--...|. |+||++. -.+.|+++|+|...|.+-. .++++|++
T Consensus 111 ~~e~~~~i~~~~~~G~~-viVGg~~-~~~~A~~~gl~~v~i~sg~--esi~~Al~ 161 (176)
T PF06506_consen 111 EEEIEAAIKQAKAEGVD-VIVGGGV-VCRLARKLGLPGVLIESGE--ESIRRALE 161 (176)
T ss_dssp HHHHHHHHHHHHHTT---EEEESHH-HHHHHHHTTSEEEESS--H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc-EEECCHH-HHHHHHHcCCcEEEEEecH--HHHHHHHH
Confidence 33433333333233333 6788885 5788999999999997744 45555554
No 112
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=57.68 E-value=1.9e+02 Score=28.33 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHhh-cccCCCCCCChhhHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHhhCCcceE-EEEc
Q psy8471 62 DWMRKLAFRYRKIKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI-----ESTTDNWLSLAIKCLNIINSRSTCTN-VIVT 134 (242)
Q Consensus 62 dwmRKLAfRyrrIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~-----e~~Td~WLs~A~k~L~~i~sR~~~vN-VLVT 134 (242)
+|+++.| +.++|.|.. |- .+..++|-..-+.|.+--+++ +..-+++-...+..+.-.+.+-.-.. ++++
T Consensus 243 ~~~~~~a---~~Lee~~GiP~~-~~~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~ 318 (455)
T PRK14476 243 ESMRKAA---EALEARTGVPYL-VFPSLTGLEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAA 318 (455)
T ss_pred HHHHHHH---HHHHHHhCCCeE-ecCCCcChHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4666555 356777755 33 234556777777777543332 11222222223333333333333333 4555
Q ss_pred CCcchHHHHHHHHhhcCCccccCccccccc-------------cChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcC
Q psy8471 135 CTQLVPALAKVLLFGLGDIFQVENIYSSTK-------------IGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNN 201 (242)
Q Consensus 135 ttqLVPaLAK~LLygL~~~fpiENIYSa~k-------------iGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~ 201 (242)
....+-+|+|.|. .||-.+.. +++.++ ++-.+-+|.... + .=++||++ -|...|++++
T Consensus 319 ~~~~~~~la~~L~-elG~~v~~--~~~~~~~~~~~~~~~~~i~~~D~~~le~~~~----~-~dliig~s-~~~~~a~~~g 389 (455)
T PRK14476 319 EPDLLLALGSFLA-EMGAEIVA--AVTTTKSPALEDLPAEEVLIGDLEDLEELAE----G-ADLLITNS-HGRQAAERLG 389 (455)
T ss_pred CHHHHHHHHHHHH-HCCCEEEE--EEeCCCcHHHHhCCcCcEEeCCHHHHHHhcc----C-CCEEEECc-hhHHHHHHcC
Confidence 6678888999998 88865544 332211 122223333322 2 33677877 4577899999
Q ss_pred CceeEeccc
Q psy8471 202 FPFWRVSSH 210 (242)
Q Consensus 202 ~PFwrIssh 210 (242)
.||.+++..
T Consensus 390 ip~~~~g~P 398 (455)
T PRK14476 390 IPLLRVGFP 398 (455)
T ss_pred CCEEEecCC
Confidence 999998654
No 113
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=56.96 E-value=22 Score=32.78 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHhh--CC-CcE-EEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 166 GKESCFERIGTRF--GR-KVT-YVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 166 GKesCFerI~~RF--G~-k~t-yvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
|.-+||+-|..+. |. ++. =+||+|..+=..-|+++|+||..++.
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 5569999999998 43 343 35678887767789999999999885
No 114
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=56.94 E-value=12 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCcceEEEEcCCcchHHHHHHHH
Q psy8471 125 RSTCTNVIVTCTQLVPALAKVLL 147 (242)
Q Consensus 125 R~~~vNVLVTttqLVPaLAK~LL 147 (242)
|...+.|.|+|..--|.||+.+=
T Consensus 1 r~g~LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 1 RRGPLQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp --TTEEEEEEESSS-HHHHHHHH
T ss_pred CCCCeEEEEECCCCChHHHHHHH
Confidence 44678899999999999999863
No 115
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.93 E-value=1e+02 Score=26.65 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCccccC------cccc----ccccChhHHHHHHHHhhCCCcE
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQVE------NIYS----STKIGKESCFERIGTRFGRKVT 183 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpiE------NIYS----a~kiGKesCFerI~~RFG~k~t 183 (242)
|..+++...++ .-=++||++ .-+.+.+++ -+|++.+|..+ +.|. ..+-+|+..-+.+. +-|. .
T Consensus 73 a~ell~~lk~~--~~~~IVS~~-~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~-~~~~--~ 146 (203)
T TIGR02137 73 AVEFVDWLRER--FQVVILSDT-FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK-SLYY--R 146 (203)
T ss_pred HHHHHHHHHhC--CeEEEEeCC-hHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH-hhCC--C
Confidence 44555555553 333455544 444333322 24666666643 3443 34567888888874 4443 4
Q ss_pred EEEEcCCHHHHHHHHHcCCceeEe
Q psy8471 184 YVVIGDGQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 184 yvvIGDG~eEe~AAk~~~~PFwrI 207 (242)
-++||||..--.+++.-+.|+.-.
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~ 170 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFH 170 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEec
Confidence 678899999899999999998753
No 116
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=56.76 E-value=29 Score=28.71 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHH---HH-HcCCc--eeEecccccHHHHHHhhhhch
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAA---AK-QNNFP--FWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~A---Ak-~~~~P--FwrIssh~Dl~~L~~AL~~~~ 224 (242)
..|+.+.++ ++++.++++|+|.+++.. ++ +.+.+ +.-+...+|+..++...+.-.
T Consensus 213 ~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v 273 (365)
T cd03807 213 RAAALLLKK-FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFV 273 (365)
T ss_pred HHHHHHHHh-CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEE
Confidence 455555555 678999999998765442 22 33433 222334678888887776533
No 117
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.64 E-value=1e+02 Score=29.57 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHhh-cccCCCCCCChhhHHHHHHHHHHH-hhhhhhHHHH----HHHHHHHHhhCCcceE-EEEc
Q psy8471 62 DWMRKLAFRYRKIKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI-ESTTDNWLSL----AIKCLNIINSRSTCTN-VIVT 134 (242)
Q Consensus 62 dwmRKLAfRyrrIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~-e~~Td~WLs~----A~k~L~~i~sR~~~vN-VLVT 134 (242)
+|++++| |.++|.|.. |- .+..++|...-+.|+.--+++ ..-....+.. +...+.-.+..-.-.. .+++
T Consensus 232 ~~~~~~a---~~Lee~~GiP~~-~~~~p~G~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~ 307 (417)
T cd01966 232 ESMRKAA---EALEERTGVPYY-VFPSLTGLEAVDALIATLAKLSGRPVPEKIRRQRAQLQDAMLDGHFYLGGKRVAIAL 307 (417)
T ss_pred HHHHHHH---HHHHHHHCCCee-ecCCCcchHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 5676555 467778866 33 344567887778887544332 1001111111 1222222222222233 4455
Q ss_pred CCcchHHHHHHHHhhcCCccccCccccccc-------------cChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcC
Q psy8471 135 CTQLVPALAKVLLFGLGDIFQVENIYSSTK-------------IGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNN 201 (242)
Q Consensus 135 ttqLVPaLAK~LLygL~~~fpiENIYSa~k-------------iGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~ 201 (242)
.+.++-+++|.|. .||-.... +.+..+ ++-..-+| ++-. + .=++||+. .|...|+++|
T Consensus 308 ~~~~~~~l~~~L~-ElG~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~e---~~~~-~-~dllig~s-~~~~~A~~~~ 378 (417)
T cd01966 308 EPDLLAALSSFLA-EMGAEIVA--AVATTDSPALEKLPAEEVVVGDLEDLE---DLAA-E-ADLLVTNS-HGRQAAERLG 378 (417)
T ss_pred CHHHHHHHHHHHH-HCCCEEEE--EEECCCCHHHHhCcccceEeCCHHHHH---Hhcc-c-CCEEEEcc-hhHHHHHhcC
Confidence 5578999999998 88754433 222111 11222233 2221 2 33566766 4567889999
Q ss_pred CceeEeccc
Q psy8471 202 FPFWRVSSH 210 (242)
Q Consensus 202 ~PFwrIssh 210 (242)
.||.++...
T Consensus 379 ip~~~~g~P 387 (417)
T cd01966 379 IPLLRAGFP 387 (417)
T ss_pred CCEEEecCC
Confidence 999998653
No 118
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=55.85 E-value=1.9e+02 Score=27.44 Aligned_cols=115 Identities=21% Similarity=0.159 Sum_probs=59.7
Q ss_pred CCChhhHHHHHHHHHH----------HhhhhhhHHHHHHHHHHHHhhCC-cceEEEEcCCcchHHHHHHHHhhcCCcccc
Q psy8471 88 LLGPTKREQWLQLRAE----------IESTTDNWLSLAIKCLNIINSRS-TCTNVIVTCTQLVPALAKVLLFGLGDIFQV 156 (242)
Q Consensus 88 LL~~~kr~~w~~lr~e----------~e~~Td~WLs~A~k~L~~i~sR~-~~vNVLVTttqLVPaLAK~LLygL~~~fpi 156 (242)
++|...-+.|++--++ .++.-..+-..+.+.|+....+- .-.-++.+....+-++++.| -.||--+..
T Consensus 237 p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l-~elGm~v~~ 315 (410)
T cd01968 237 FYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSAL-QDLGMEVVA 315 (410)
T ss_pred cCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHH-HHCCCEEEE
Confidence 4777777777753332 22222333333455555544442 22335677788899999965 578865433
Q ss_pred CccccccccChhHHHHHHHHhhCCC-------------------cEEEEEcCCHHHHHHHHHcCCceeEec
Q psy8471 157 ENIYSSTKIGKESCFERIGTRFGRK-------------------VTYVVIGDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 157 ENIYSa~kiGKesCFerI~~RFG~k-------------------~tyvvIGDG~eEe~AAk~~~~PFwrIs 208 (242)
=-.+... ++ =+++|.++.+.+ --=++||.. .|...|+++++||..++
T Consensus 316 ~~~~~~~---~~-~~~~~~~~~~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~s-~~~~~a~~~gip~~~~~ 381 (410)
T cd01968 316 TGTQKGT---KE-DYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAGG-KERYLALKLGIPFCDIN 381 (410)
T ss_pred EecccCC---HH-HHHHHHHHhCCCcEEEeCCCHHHHHHHHhhcCCCEEEECC-cchhhHHhcCCCEEEcc
Confidence 2111111 11 133444443211 011355554 34577788899998664
No 119
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=55.85 E-value=94 Score=28.37 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHh------hcCCccccCccccccccChhHHHHHHHHhhC-CCcEEEEE
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLF------GLGDIFQVENIYSSTKIGKESCFERIGTRFG-RKVTYVVI 187 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLy------gL~~~fpiENIYSa~kiGKesCFerI~~RFG-~k~tyvvI 187 (242)
..+.|..+..| ...-.++|+..- ..|+-+|- ++.++|.. +...+| .|-..+.+|.+++| ..=..|.|
T Consensus 36 ~~e~L~~L~~~-Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~f~~--~~~~~~-pk~~~i~~~~~~l~i~~~~~vfi 109 (320)
T TIGR01686 36 LQEKIKTLKKQ-GFLLALASKNDE--DDAKKVFERRKDFILQAEDFDA--RSINWG-PKSESLRKIAKKLNLGTDSFLFI 109 (320)
T ss_pred HHHHHHHHHhC-CCEEEEEcCCCH--HHHHHHHHhCccccCcHHHeeE--EEEecC-chHHHHHHHHHHhCCCcCcEEEE
Confidence 44555555444 455566777643 33443443 44444533 233455 79999999999997 45689999
Q ss_pred cCCHHHHHHHHHc
Q psy8471 188 GDGQDEEAAAKQN 200 (242)
Q Consensus 188 GDG~eEe~AAk~~ 200 (242)
||..-|.++++..
T Consensus 110 dD~~~d~~~~~~~ 122 (320)
T TIGR01686 110 DDNPAERANVKIT 122 (320)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998884
No 120
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=55.55 E-value=37 Score=31.16 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhC----CcceEEEEcCCcchH--HHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEE
Q psy8471 111 WLSLAIKCLNIINSR----STCTNVIVTCTQLVP--ALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTY 184 (242)
Q Consensus 111 WLs~A~k~L~~i~sR----~~~vNVLVTttqLVP--aLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~ty 184 (242)
.+..|.++++.+..+ ...+ ++||+..=.| ..++.|.=.+|--++.|+|+++. .....+.++|+++ .|
T Consensus 17 ~i~ga~eal~~L~~~~~~~g~~~-~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-----~~~~~ll~~~~~~-v~ 89 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLKIPY-IFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH-----SPYKSLVNKYEKR-IL 89 (321)
T ss_pred ccHHHHHHHHHHhccccccCCCE-EEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh-----HHHHHHHHHcCCc-eE
Confidence 355666777777665 4444 7888665443 45676666777778889999986 3567777777553 45
Q ss_pred EEEcCC
Q psy8471 185 VVIGDG 190 (242)
Q Consensus 185 vvIGDG 190 (242)
++-.++
T Consensus 90 viG~~~ 95 (321)
T TIGR01456 90 AVGTGS 95 (321)
T ss_pred EEeChH
Confidence 554443
No 121
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=55.53 E-value=33 Score=29.39 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHH-------HHHHcCCc--eeEecccccHHHHHHhhhhch
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEA-------AAKQNNFP--FWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~-------AAk~~~~P--FwrIssh~Dl~~L~~AL~~~~ 224 (242)
...|..++++ +++++++++|+|.+++. .+++++.+ +.-+..++|+..++.+.+.-.
T Consensus 204 i~~~~~l~~~-~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i 268 (355)
T cd03819 204 IEALARLKKD-DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVV 268 (355)
T ss_pred HHHHHHHHhc-CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEE
Confidence 3566677666 68899999999976432 33444543 223334788999998887643
No 122
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=54.98 E-value=43 Score=27.40 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHHH---HHHcCCc--eeEecccccHHHHHHhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEAA---AKQNNFP--FWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~A---Ak~~~~P--FwrIssh~Dl~~L~~AL~~ 222 (242)
.++.+.++ ++++.++++|+|.+++.. +++++.+ +.-+...+|+..++...+.
T Consensus 210 ~~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 266 (353)
T cd03811 210 AFALLRKE-GPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL 266 (353)
T ss_pred HHHHhhhc-CCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE
Confidence 44555555 679999999999776553 3445543 2333446777777776543
No 123
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=53.93 E-value=11 Score=33.68 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
|++..=|||+|| +.++.||..+.+|..+. ||..|
T Consensus 57 gk~~kV~v~~~~-~~~~~Ak~aGad~v~~e---~l~~l 90 (214)
T PTZ00225 57 RPRMTVCLLCDL-VHEDIAKKEGVPTMNQE---ELKKL 90 (214)
T ss_pred CCCcEEEEECCh-HHHHHHHHCCCCEECHH---HHHHH
Confidence 467888999999 45666899999977765 55555
No 124
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=53.87 E-value=51 Score=28.46 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=43.2
Q ss_pred ccccccChhHHHHHHHHhh---CCCcEEEEEcCCH---HH--HHHHHHcCCceeEeccccc-HHHHHHhhh
Q psy8471 160 YSSTKIGKESCFERIGTRF---GRKVTYVVIGDGQ---DE--EAAAKQNNFPFWRVSSHSD-LAALYNALD 221 (242)
Q Consensus 160 YSa~kiGKesCFerI~~RF---G~k~tyvvIGDG~---eE--e~AAk~~~~PFwrIssh~D-l~~L~~AL~ 221 (242)
.+.+-+||-..--++..+| |+|+..+..-.-+ -| ..-|+.+++||..+....| ...+..+++
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred ECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4678899999999888887 7888888864332 12 2359999999999988765 343444554
No 125
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.35 E-value=1.9e+02 Score=26.62 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHhhCCcceEEEEcCCcchHHHHHHH--HhhcC---CccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 117 KCLNIINSRSTCTNVIVTCTQLVPALAKVL--LFGLG---DIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 117 k~L~~i~sR~~~vNVLVTttqLVPaLAK~L--LygL~---~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~ 191 (242)
..++.+.++...+.|+||++. |+-..+. .++-+ -++|++.. ....++..++-|++..++-+|-+
T Consensus 68 ~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~---------~~~~~~l~~~~Pd~v~~~~~~~~ 136 (425)
T PRK05749 68 PLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLP---------GAVRRFLRFWRPKLVIIMETELW 136 (425)
T ss_pred HHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcH---------HHHHHHHHhhCCCEEEEEecchh
Confidence 333334455556778888754 3222222 22211 14555543 57888899999998876666655
Q ss_pred HHH-HHHHHcCCceeEeccc
Q psy8471 192 DEE-AAAKQNNFPFWRVSSH 210 (242)
Q Consensus 192 eEe-~AAk~~~~PFwrIssh 210 (242)
-.- .+|++.+.|.+-++.+
T Consensus 137 ~~~l~~~~~~~ip~vl~~~~ 156 (425)
T PRK05749 137 PNLIAELKRRGIPLVLANAR 156 (425)
T ss_pred HHHHHHHHHCCCCEEEEecc
Confidence 443 3678899999877544
No 126
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=51.67 E-value=3.4e+02 Score=29.22 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCcce-EEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEE---------
Q psy8471 115 AIKCLNIINSRSTCT-NVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTY--------- 184 (242)
Q Consensus 115 A~k~L~~i~sR~~~v-NVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~ty--------- 184 (242)
+...++-...+-.-- =+|.+-+.++-++++.|. .||--+- -..++.+.+.-++++++..+..+..
T Consensus 307 ~~~~l~~~~~~L~GKrv~i~~g~~~~~~la~~l~-elGmevv----~~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el 381 (917)
T PRK14477 307 CRAALAPYRARLEGKRVVLFTGGVKTWSMVNALR-ELGVEVL----AAGTQNSTLEDFARMKALMHKDAHIIEDTSTAGL 381 (917)
T ss_pred HHHHHHHHHHHccCCEEEEECCCchHHHHHHHHH-HCCCEEE----EEcCCCCCHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 344444444444333 334566778899999885 6765542 2444555555666666666433322
Q ss_pred ----------EEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 185 ----------VVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 185 ----------vvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
++||.+ .+...|+++++||..+..
T Consensus 382 ~~~i~~~~pDLlig~~-~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 382 LRVMREKMPDLIVAGG-KTKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHhcCCCEEEecC-chhhHHHHcCCCeEEccC
Confidence 345544 557788899999998765
No 127
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=51.52 E-value=33 Score=29.63 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=43.2
Q ss_pred cccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHH-cCCceeEecccccHHHHH
Q psy8471 163 TKIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQ-NNFPFWRVSSHSDLAALY 217 (242)
Q Consensus 163 ~kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~-~~~PFwrIssh~Dl~~L~ 217 (242)
..++|.+-.+++++++| ..-.-+++||+.--.+..+. ....+.--+.++++.+.-
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~ 220 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWY 220 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHH
Confidence 34789999999999998 44567999999888888887 556776666677777643
No 128
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=51.15 E-value=36 Score=28.43 Aligned_cols=54 Identities=26% Similarity=0.474 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHHH---HHHcCCc----eeEecccccHHHHHHhhhh
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEAA---AKQNNFP----FWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~A---Ak~~~~P----FwrIssh~Dl~~L~~AL~~ 222 (242)
..+++.+.++ ++++.++++|+|.+++.- +++++.+ |..--++.++..++..-+.
T Consensus 221 ~~~~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 281 (374)
T cd03817 221 IRAFARLLKE-EPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADL 281 (374)
T ss_pred HHHHHHHHHh-CCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE
Confidence 4566666666 789999999999766542 3334432 3333345677777776554
No 129
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=51.01 E-value=75 Score=30.37 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=41.7
Q ss_pred EEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHH----------------HhhC-CCcEEEEEcCCHHHH
Q psy8471 132 IVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIG----------------TRFG-RKVTYVVIGDGQDEE 194 (242)
Q Consensus 132 LVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~----------------~RFG-~k~tyvvIGDG~eEe 194 (242)
+..-..++-+++++|. .+|--+..=-...-.+..++.-.+++. ++.. .|+-. +||.. .+.
T Consensus 285 v~g~~~~~~~la~~L~-elGmevv~~~t~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~pDl-~Ig~s-~~~ 361 (416)
T cd01980 285 VSGYEGNELLVARLLI-ESGAEVPYVSTSIPKTSLSAPDYEWLSALGVEVRYRKSLEDDIAAVEEYRPDL-AIGTT-PLV 361 (416)
T ss_pred EECCCchhHHHHHHHH-HcCCEEEEEecCCCChhhhHHHHHHHHhcCCccccCCCHHHHHHHHhhcCCCE-EEeCC-hhh
Confidence 5666777777999986 777653321110000111333444433 2221 23333 44554 477
Q ss_pred HHHHHcCCceeEecc
Q psy8471 195 AAAKQNNFPFWRVSS 209 (242)
Q Consensus 195 ~AAk~~~~PFwrIss 209 (242)
..|+++++|+.|+..
T Consensus 362 ~~a~~~giP~~r~~~ 376 (416)
T cd01980 362 QYAKEKGIPALYYTN 376 (416)
T ss_pred HHHHHhCCCEEEecC
Confidence 799999999999876
No 130
>PRK10444 UMP phosphatase; Provisional
Probab=50.16 E-value=36 Score=30.27 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=37.4
Q ss_pred cCh--hHHHHHHHHhhC-CCcEEEEEcCCHH-HHHHHHHcCCceeEecc
Q psy8471 165 IGK--ESCFERIGTRFG-RKVTYVVIGDGQD-EEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 165 iGK--esCFerI~~RFG-~k~tyvvIGDG~e-Ee~AAk~~~~PFwrIss 209 (242)
.|| ...|+.+++++| ++-.-++|||..+ .-.+|+..+|+++-|.+
T Consensus 172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~ 220 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS 220 (248)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECC
Confidence 465 578999999998 5567888999974 67799999999998865
No 131
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=50.11 E-value=26 Score=30.30 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc-eeEe---cccccHHHHHHhhhhch
Q psy8471 171 FERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP-FWRV---SSHSDLAALYNALDMGF 224 (242)
Q Consensus 171 FerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P-FwrI---ssh~Dl~~L~~AL~~~~ 224 (242)
|..+.++ ++++.+++||+|..+++ .++.++.+ .+++ -.+.++..++.+.+.-.
T Consensus 210 ~~~l~~~-~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v 269 (367)
T cd05844 210 FARLARR-VPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFL 269 (367)
T ss_pred HHHHHHh-CCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEE
Confidence 3344444 67899999999975543 34555443 1222 22356888888877643
No 132
>KOG0091|consensus
Probab=50.00 E-value=23 Score=32.13 Aligned_cols=110 Identities=29% Similarity=0.463 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCC--ChhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHH
Q psy8471 68 AFRYRKIKDTYNNYRNSVGGLL--GPTKREQWLQLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKV 145 (242)
Q Consensus 68 AfRyrrIke~Y~~yk~~v~gLL--~~~kr~~w~~lr~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~ 145 (242)
.-|+|.|-.-| |||.|+.|| +-..|+.++-+. .|+-.|...+. +.++||=.||-+- +
T Consensus 68 qerfrsitksy--yrnsvgvllvyditnr~sfehv~--------~w~~ea~m~~q---~P~k~VFlLVGhK--------s 126 (213)
T KOG0091|consen 68 QERFRSITKSY--YRNSVGVLLVYDITNRESFEHVE--------NWVKEAAMATQ---GPDKVVFLLVGHK--------S 126 (213)
T ss_pred hHHHHHHHHHH--hhcccceEEEEeccchhhHHHHH--------HHHHHHHHhcC---CCCeeEEEEeccc--------c
Confidence 46889998877 899999988 444555555443 58888876654 6778888887542 2
Q ss_pred HHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEeccccc----------HHH
Q psy8471 146 LLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSD----------LAA 215 (242)
Q Consensus 146 LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~D----------l~~ 215 (242)
=|- |-.. |+ -.|-|.-||.|+|-|+--|+.+. ...
T Consensus 127 DL~------------SqRq-----------------Vt------~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 127 DLQ------------SQRQ-----------------VT------AEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred chh------------hhcc-----------------cc------HHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHH
Confidence 111 2221 22 12334489999999999887553 234
Q ss_pred HHHhhhhchhhhhhchhh
Q psy8471 216 LYNALDMGFLIVEEGLVG 233 (242)
Q Consensus 216 L~~AL~~~~l~~~~~~~~ 233 (242)
.+.++..|..-++.|.-|
T Consensus 172 If~~i~qGeik~edgw~g 189 (213)
T KOG0091|consen 172 IFQAIQQGEIKLEDGWGG 189 (213)
T ss_pred HHHHHhcCceeeeecccc
Confidence 566666666666666544
No 133
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=49.05 E-value=27 Score=22.47 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHhhC--------CCcEEEEEcCCHHHH--HHHHHcCCceeEe
Q psy8471 169 SCFERIGTRFG--------RKVTYVVIGDGQDEE--AAAKQNNFPFWRV 207 (242)
Q Consensus 169 sCFerI~~RFG--------~k~tyvvIGDG~eEe--~AAk~~~~PFwrI 207 (242)
+-++++.+.+| +.+|+||+++...+. ..|+..+.|+++.
T Consensus 16 ~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 16 DELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred HHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecH
Confidence 34455555554 379999999886654 5677778877754
No 134
>PLN02501 digalactosyldiacylglycerol synthase
Probab=48.84 E-value=41 Score=36.05 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCceeEecccccHHHHHHhhhhchh-hhhhchhhhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFPFWRVSSHSDLAALYNALDMGFL-IVEEGLVGTLAE 237 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l-~~~~~~~~~~~~ 237 (242)
.|..+..+. +++++++||||+++++ .|+++++...-+...+|...++++.+.-.+ -..|++--++.|
T Consensus 567 Ala~L~~~~-pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLE 637 (794)
T PLN02501 567 LLAKHKNEL-DGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAE 637 (794)
T ss_pred HHHHHHhhC-CCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 344444443 5799999999988654 356677643224445667778888875444 344554444433
No 135
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=48.58 E-value=58 Score=26.67 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHHH---HHHcCCce-eEe-cccccHHHHHHhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEAA---AKQNNFPF-WRV-SSHSDLAALYNALDM 222 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~A---Ak~~~~PF-wrI-ssh~Dl~~L~~AL~~ 222 (242)
+|+.+.+ ..++++++++|+|.+++.- +++.+.+- ..+ ....++..++.+.+.
T Consensus 199 ~~~~l~~-~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 199 AWAKIAK-KHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred HHHHHHh-cCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 4444443 2688999999999776543 44555432 222 225788888887765
No 136
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=48.01 E-value=44 Score=27.81 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHHH---HcCCceeEec---ccccHHHHHHhhhhchh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAAK---QNNFPFWRVS---SHSDLAALYNALDMGFL 225 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AAk---~~~~PFwrIs---sh~Dl~~L~~AL~~~~l 225 (242)
..|+++.++ +++.++++|+|.+.+...+ ..+.|-+++- ++.++..++.+.+...+
T Consensus 240 ~~~~~l~~~--~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~ 300 (394)
T cd03794 240 EAAALLKDR--PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLV 300 (394)
T ss_pred HHHHHHhhc--CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEE
Confidence 445555554 6899999999987665433 4555655544 34577778877765544
No 137
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=47.60 E-value=35 Score=31.92 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc-eeEe---cccccHHHHHHhhhhchh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP-FWRV---SSHSDLAALYNALDMGFL 225 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P-FwrI---ssh~Dl~~L~~AL~~~~l 225 (242)
.|..++++ ++++++++||||.++++ .+++++.. -+.+ -++.++..++.+.+.-.+
T Consensus 243 a~~~l~~~-~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~ 304 (406)
T PRK15427 243 ACRQLKEQ-GVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLL 304 (406)
T ss_pred HHHHHHhh-CCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 44444443 67899999999976654 45666653 2222 346788888888876544
No 138
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.92 E-value=28 Score=29.22 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHH-HHcCCceeEecccccHHHHHHhhhhc
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAA-KQNNFPFWRVSSHSDLAALYNALDMG 223 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AA-k~~~~PFwrIssh~Dl~~L~~AL~~~ 223 (242)
.+|+.+.++ +++.++++|+|.+++... ..-++-|..--.+.++..++.+.+.-
T Consensus 217 ~~~~~l~~~--~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~ 270 (364)
T cd03814 217 DADLPLRRR--PPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVF 270 (364)
T ss_pred HHHHHhhhc--CCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEE
Confidence 445555444 579999999997776543 22334443333566788888877763
No 139
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=46.27 E-value=27 Score=30.97 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHH--------hhhhchhhhhhchhhhh
Q psy8471 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYN--------ALDMGFLIVEEGLVGTL 235 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~--------AL~~~~l~~~~~~~~~~ 235 (242)
|+.++=||++|+ +.++.||+.+.++ |-.-.+|..++. +.+.++++.+..+...|
T Consensus 56 ~k~~~V~vf~~~-~~~~~Ak~aGa~~--v~~~e~L~~i~~~~k~~rkl~~~fD~~lA~~~im~~l 117 (215)
T PRK04203 56 GKEVKIAVIAKG-ELALQAKEAGADY--VITREELEELGGDKRAAKKLANEYDFFIAEADLMPLI 117 (215)
T ss_pred CCCcEEEEEcCh-HhHHHHHHcCCCE--EeCHHHHHHHhcChHHHhhhhhcCCEEEECHHHHHHH
Confidence 567889999999 5667789999886 455666777765 35667665555544443
No 140
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=45.98 E-value=29 Score=29.29 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=42.1
Q ss_pred cccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHH------cCCceeEecccccHHHH
Q psy8471 159 IYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQ------NNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 159 IYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~------~~~PFwrIssh~Dl~~L 216 (242)
|.+.++.||-+-=+.+.+++|+++.|+.-+.-.|+|-.++. -+-.|-.|..--|+..+
T Consensus 6 i~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~ 69 (170)
T PRK05800 6 VTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAEL 69 (170)
T ss_pred EECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHH
Confidence 56788999999999999999999999999988888765552 12334445554455544
No 141
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=45.90 E-value=41 Score=29.16 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHhh--CC-Cc-EEEEEcCCHHHH--HHHHHcCCceeEecc
Q psy8471 166 GKESCFERIGTRF--GR-KV-TYVVIGDGQDEE--AAAKQNNFPFWRVSS 209 (242)
Q Consensus 166 GKesCFerI~~RF--G~-k~-tyvvIGDG~eEe--~AAk~~~~PFwrIss 209 (242)
|..+||+-|.++. |. ++ .-+||.|..|-. +-|+++++|+..++.
T Consensus 9 g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 9 GNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred CCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 5569999999988 33 33 334578864432 568999999998653
No 142
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=44.52 E-value=53 Score=26.98 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhh
Q psy8471 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNAL 220 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL 220 (242)
-+++.+++||. ...++++++++.-..+...++...|-.++
T Consensus 200 ~~~~~~~aig~--~t~~~l~~~g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 200 LKNVKIAAIGP--RTAEALRELGLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hcCCeEEEECH--HHHHHHHHcCCCceeeecCCChHHHHhhC
Confidence 47899999965 47778888999888888888877776553
No 143
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.17 E-value=71 Score=22.85 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=35.0
Q ss_pred cChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccc-cHHHHHHhh
Q psy8471 165 IGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHS-DLAALYNAL 220 (242)
Q Consensus 165 iGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~-Dl~~L~~AL 220 (242)
.--....++|+++. +++..|++++-.++....+.+...+...=..| +...|.+|+
T Consensus 56 ~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 56 GDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp SBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred cccccccccccccc-ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 34567888998877 99999999977665554444444444333333 556666654
No 144
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=43.87 E-value=2.5e+02 Score=25.93 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=58.6
Q ss_pred HHHHHhh-cccCCCCCCChhhHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHhhCCcceEEE-EcCCcchHHHHHH
Q psy8471 74 IKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI------ESTTDNWLSLAIKCLNIINSRSTCTNVI-VTCTQLVPALAKV 145 (242)
Q Consensus 74 Ike~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~------e~~Td~WLs~A~k~L~~i~sR~~~vNVL-VTttqLVPaLAK~ 145 (242)
++|.|.. |-. +.-.+|...-+.|.+--++. +.....+-..+...+.....+-.-..|+ .......-+|+++
T Consensus 211 L~e~~giP~~~-~~~p~G~~~t~~~l~~i~~~lg~~~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~~~ 289 (398)
T PF00148_consen 211 LEERFGIPYLY-FPSPYGIEGTDAWLRAIAEALGKPIAEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGLARF 289 (398)
T ss_dssp HHHHHT-EEEE-EC-SBSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCeee-ccccccHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHHHHH
Confidence 3455544 221 34556777777777533221 2222222222222222222222233344 4455677789999
Q ss_pred HHhhcCCccccCccccccccChhHHHHHHHHhhCC---Cc-----------------EEEEEcCCHHHHHHHHHcCCcee
Q psy8471 146 LLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR---KV-----------------TYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 146 LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~---k~-----------------tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
|. .||--+.. ++.....-++. |++...+.. ++ .=++||+.. |...|+++++||.
T Consensus 290 L~-elG~~v~~--v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~pdl~ig~~~-~~~~a~~~~~~~~ 363 (398)
T PF00148_consen 290 LE-ELGMEVVA--VGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEELLEELKPDLLIGSSH-ERYLAKKLGIPLI 363 (398)
T ss_dssp HH-HTT-EEEE--EEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHHHHHHT-SEEEESHH-HHHHHHHTT--EE
T ss_pred HH-HcCCeEEE--EEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHHHHhcCCCEEEechh-hHHHHHHhCCCeE
Confidence 99 67643322 22222211111 333333210 10 125678775 7788888988888
Q ss_pred Eecc
Q psy8471 206 RVSS 209 (242)
Q Consensus 206 rIss 209 (242)
+++.
T Consensus 364 ~~~~ 367 (398)
T PF00148_consen 364 RIGF 367 (398)
T ss_dssp E-SS
T ss_pred EEeC
Confidence 8877
No 145
>PRK07774 short chain dehydrogenase; Provisional
Probab=42.71 E-value=1.3e+02 Score=24.87 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=27.8
Q ss_pred CccccccccChhHHHHHHHHhhC-CCcEEEEEcCC
Q psy8471 157 ENIYSSTKIGKESCFERIGTRFG-RKVTYVVIGDG 190 (242)
Q Consensus 157 ENIYSa~kiGKesCFerI~~RFG-~k~tyvvIGDG 190 (242)
-+.|+++|..-++..+.+.++++ .+++.++|.-|
T Consensus 152 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg 186 (250)
T PRK07774 152 SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPG 186 (250)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecC
Confidence 46899999999999999999884 67887777543
No 146
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=42.30 E-value=60 Score=26.68 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=30.8
Q ss_pred hCCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhh
Q psy8471 178 FGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 178 FG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~ 222 (242)
.-.++.+++||.. +.+++++.+++...+...++...|...+..
T Consensus 75 ~~~~~~~~avG~~--Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~ 117 (239)
T cd06578 75 ALAGLKIAAVGPK--TAEALREAGLTADFVPEEGDSEGLLELLEL 117 (239)
T ss_pred cccCCEEEEECHH--HHHHHHHcCCCceeCCCccCHHHHHHHHHh
Confidence 3467778888765 777888888888777566676666666644
No 147
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=42.17 E-value=29 Score=23.84 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=23.4
Q ss_pred hCCCcEEEEEcC---CHHHHHHHHHcCCceeEe
Q psy8471 178 FGRKVTYVVIGD---GQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 178 FG~k~tyvvIGD---G~eEe~AAk~~~~PFwrI 207 (242)
+.++++++|+++ ...+..+|...+.|+++.
T Consensus 39 ~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 39 FSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp SSTTSSEEEESSSHCCCHHHHHHHHTTSEEEET
T ss_pred cccCcEEEEeCCCCCccHHHHHHHHCCCeEecH
Confidence 346789999995 456677899999998864
No 148
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=41.64 E-value=13 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=21.3
Q ss_pred CcEEEEEcCCHHHH---HHHHHcCCceeEec
Q psy8471 181 KVTYVVIGDGQDEE---AAAKQNNFPFWRVS 208 (242)
Q Consensus 181 k~tyvvIGDG~eEe---~AAk~~~~PFwrIs 208 (242)
++|+||+.+...++ ..|+..+.|.++.+
T Consensus 41 ~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~ 71 (80)
T smart00292 41 TTTHVIVGSPEGGKLELLLAIALGIPIVTED 71 (80)
T ss_pred ceeEEEEcCCCCccHHHHHHHHcCCCCccHH
Confidence 79999999876654 56777888877654
No 149
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=41.48 E-value=53 Score=28.18 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=43.8
Q ss_pred ccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHH
Q psy8471 164 KIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAA 215 (242)
Q Consensus 164 kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~ 215 (242)
.+.|.+-.+++.+++| ..-.-++|||+.---+..+..++++---+.++++.+
T Consensus 186 ~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~ 238 (256)
T TIGR00099 186 GVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKA 238 (256)
T ss_pred CCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHH
Confidence 4679999999999998 556789999999999999999999877666665543
No 150
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=41.33 E-value=1e+02 Score=24.20 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHHHcCCceeEec--ccccHHHHHHhhh
Q psy8471 196 AAKQNNFPFWRVS--SHSDLAALYNALD 221 (242)
Q Consensus 196 AAk~~~~PFwrIs--sh~Dl~~L~~AL~ 221 (242)
+-++.|+|+.||+ ..++...|...++
T Consensus 96 ~l~~agiplir~~~~~~~~~~~l~~~l~ 123 (126)
T PF10881_consen 96 VLKKAGIPLIRISPKDSYSVEELRRDLR 123 (126)
T ss_pred HHHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 5577999999994 4778888888774
No 151
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=41.22 E-value=87 Score=28.76 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHH------------HHHHHHcCCceeEec--ccccHHHHHHhhhhchhh--hhhchh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDE------------EAAAKQNNFPFWRVS--SHSDLAALYNALDMGFLI--VEEGLV 232 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eE------------e~AAk~~~~PFwrIs--sh~Dl~~L~~AL~~~~l~--~~~~~~ 232 (242)
..|.++.++ ++++++++||||.+. ++.|+.++-.+.-+. ++.++..++.+.+.-.+- .+|++-
T Consensus 213 ~A~~~l~~~-~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~ 291 (380)
T PRK15484 213 QAFEKLATA-HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFC 291 (380)
T ss_pred HHHHHHHHh-CCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccc
Confidence 466666555 488999999998631 113444543332232 345788999888775542 235544
Q ss_pred hhhhh
Q psy8471 233 GTLAE 237 (242)
Q Consensus 233 ~~~~~ 237 (242)
.++.|
T Consensus 292 ~~~lE 296 (380)
T PRK15484 292 MVAVE 296 (380)
T ss_pred cHHHH
Confidence 44444
No 152
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.89 E-value=2e+02 Score=28.64 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=43.4
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccc--------------cC-hhHHHHHHHHhhCCCcEEEEEcCCHHHHH
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTK--------------IG-KESCFERIGTRFGRKVTYVVIGDGQDEEA 195 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~k--------------iG-KesCFerI~~RFG~k~tyvvIGDG~eEe~ 195 (242)
.++.....+-+++|.|.-.||--.=+--.|+... +. .+. +..|.++--+.--=++||+. -|..
T Consensus 309 ~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~~D-~~ei~~~I~~~~pdliiGs~-~er~ 386 (513)
T CHL00076 309 VVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILITDD-HTEVGDMIARVEPSAIFGTQ-MERH 386 (513)
T ss_pred EEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEEecC-HHHHHHHHHhcCCCEEEECc-hhhH
Confidence 5666778999999999866665431111122110 00 011 22233222111123677877 6667
Q ss_pred HHHHcCCceeEec
Q psy8471 196 AAKQNNFPFWRVS 208 (242)
Q Consensus 196 AAk~~~~PFwrIs 208 (242)
.||++++|+.+|+
T Consensus 387 ia~~lgiP~~~is 399 (513)
T CHL00076 387 IGKRLDIPCGVIS 399 (513)
T ss_pred HHHHhCCCEEEee
Confidence 7899999999988
No 153
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=40.62 E-value=54 Score=26.99 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHHHH---cCCc-eeEec---ccccHHHHHHhhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAAKQ---NNFP-FWRVS---SHSDLAALYNALDM 222 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AAk~---~~~P-FwrIs---sh~Dl~~L~~AL~~ 222 (242)
.+++.+.++ ++++.++++|+|.+++...+. ++.+ .+.+- ++.++..++...+.
T Consensus 222 ~~~~~~~~~-~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 281 (377)
T cd03798 222 EALARLLKK-RPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV 281 (377)
T ss_pred HHHHHHHhc-CCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe
Confidence 566666666 678999999999776543333 3442 33332 34556667666554
No 154
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=40.47 E-value=78 Score=24.19 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=33.3
Q ss_pred HHHHHHhh-CCCcEEEEEcCCHHHHH--HHHHcCCceeEecccccHHHHHHhhhh
Q psy8471 171 FERIGTRF-GRKVTYVVIGDGQDEEA--AAKQNNFPFWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 171 FerI~~RF-G~k~tyvvIGDG~eEe~--AAk~~~~PFwrIssh~Dl~~L~~AL~~ 222 (242)
+.++.++| .+++..|+|+...+++. -++++++|| ++=+.++ ..++.++.+
T Consensus 46 l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~-p~~~D~~-~~~~~~~g~ 98 (149)
T cd02970 46 LSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPF-PVYADPD-RKLYRALGL 98 (149)
T ss_pred HHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCC-eEEECCc-hhHHHHcCc
Confidence 56677888 46788888887655544 366677775 5656665 456666654
No 155
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=40.38 E-value=43 Score=28.53 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=41.8
Q ss_pred ccChhHHHHHHHHhhCC-CcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 164 KIGKESCFERIGTRFGR-KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 164 kiGKesCFerI~~RFG~-k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
.++|..-.+++.+|+|- .-.-++|||+.--.++.+..+.+|.-=+..+.+.+.
T Consensus 157 ~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~ 210 (236)
T TIGR02471 157 RASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGL 210 (236)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHh
Confidence 46899999999999983 334588999988888888888888655556666655
No 156
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.12 E-value=55 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHhh--CC-C-cEEEEEcCCHHHHHHHHHcCCceeEeccc
Q psy8471 166 GKESCFERIGTRF--GR-K-VTYVVIGDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 166 GKesCFerI~~RF--G~-k-~tyvvIGDG~eEe~AAk~~~~PFwrIssh 210 (242)
|.-+||+-|..+. |. + --=+||+|..+=.+-|+++|+|+..++..
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCC
Confidence 3459999999998 43 2 34467888888888999999999987643
No 157
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=39.90 E-value=69 Score=29.65 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhh--CC-CcEEE-EEcCCHHHHHHHHHcCCceeEecc
Q psy8471 167 KESCFERIGTRF--GR-KVTYV-VIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 167 KesCFerI~~RF--G~-k~tyv-vIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.-+||+.|..++ |. ++.-+ ||+|..|=...|+++|+|+..++.
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPI 145 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCC
Confidence 459999999888 43 34444 467777767779999999998753
No 158
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=39.78 E-value=85 Score=25.60 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHHH---HcCC----ceeEecccccHHHHHHhhhhc
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAAK---QNNF----PFWRVSSHSDLAALYNALDMG 223 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AAk---~~~~----PFwrIssh~Dl~~L~~AL~~~ 223 (242)
.+|+.+.++. ++++++++|++.+.+...+ +++. -|..--++.++..++..-+.-
T Consensus 219 ~~~~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~ 279 (374)
T cd03801 219 EALAKLRKEY-PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVF 279 (374)
T ss_pred HHHHHHhhhc-CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEE
Confidence 3444444443 7899999999877665443 2332 233333457788887776553
No 159
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=39.77 E-value=70 Score=28.03 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 180 RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 180 ~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
+++.++|||. -..++|++++|.-..+...++..+|..|+.
T Consensus 209 ~~~~~~~ig~--~ta~a~~~~G~~~~~~a~~~t~~~L~~al~ 248 (255)
T PRK05752 209 ARLPLFVPSP--RVAEQARAAGAQTVVDCRGASAAALLAALR 248 (255)
T ss_pred cCceEEEeCH--HHHHHHHHcCCCceeeCCCCChHHHHHHHH
Confidence 4678888865 678899999999999998999999999874
No 160
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=39.41 E-value=49 Score=31.21 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHhh--CCCcEEEEEcCCHHHHHH---HHHcCCceeEecccccHHHHHHhhhhchh
Q psy8471 166 GKESCFERIGTRF--GRKVTYVVIGDGQDEEAA---AKQNNFPFWRVSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 166 GKesCFerI~~RF--G~k~tyvvIGDG~eEe~A---Ak~~~~PFwrIssh~Dl~~L~~AL~~~~l 225 (242)
+++.-.+-+.+-+ .+++.+++||||.++++. ++..++-|.---++.|+..++.+.+.-.+
T Consensus 273 ~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~ 337 (465)
T PLN02871 273 GAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVM 337 (465)
T ss_pred chhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEE
Confidence 4444444444433 368999999999776543 23344444444456789999998887443
No 161
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=39.19 E-value=44 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHHhhC--CCcEEEEEcCCHHHHHH-HHHcCCceeEecc
Q psy8471 172 ERIGTRFG--RKVTYVVIGDGQDEEAA-AKQNNFPFWRVSS 209 (242)
Q Consensus 172 erI~~RFG--~k~tyvvIGDG~eEe~A-Ak~~~~PFwrIss 209 (242)
+|+.++.| ...++|+|.|..+.-.. |+..++|++.+..
T Consensus 98 ~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 98 EWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred HHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCCC
Confidence 34433444 67899999997665554 7778888777543
No 162
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=39.11 E-value=81 Score=25.95 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCHHHHHHHH----Hc-CCceeEe-cccccHHHHHHhhhhc
Q psy8471 179 GRKVTYVVIGDGQDEEAAAK----QN-NFPFWRV-SSHSDLAALYNALDMG 223 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk----~~-~~PFwrI-ssh~Dl~~L~~AL~~~ 223 (242)
++++.++++|++.+++...+ +. .-+.+++ ....|+..++.+-+.-
T Consensus 217 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~ 267 (359)
T cd03808 217 GPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVF 267 (359)
T ss_pred CCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEE
Confidence 57899999999987665432 22 1222222 2367888888877653
No 163
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=38.93 E-value=2.6e+02 Score=24.19 Aligned_cols=95 Identities=23% Similarity=0.287 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHH-HhhcCCccccCccccccc-cCh--hHHHHHHHHhhC-CCcEEEE
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVL-LFGLGDIFQVENIYSSTK-IGK--ESCFERIGTRFG-RKVTYVV 186 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~L-LygL~~~fpiENIYSa~k-iGK--esCFerI~~RFG-~k~tyvv 186 (242)
+.-+..+|+.+.++. +=+-|+|.+=-...-..| ..||..+|+. .|++..- .|| -..|-.=.+|+| ..-..||
T Consensus 88 ~pGv~~~l~~L~~~~--i~~avaS~s~~~~~~~~L~~~gl~~~f~~-~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 88 IPGVVELLEQLKARG--IPLAVASSSPRRAAERVLARLGLLDYFDV-IVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CccHHHHHHHHHhcC--CcEEEecCChHHHHHHHHHHccChhhcch-hccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 344566666666654 445555555433444444 5888888886 3443322 333 578999999998 4477899
Q ss_pred EcCCHHHHHHHHHcCCceeEecc
Q psy8471 187 IGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 187 IGDG~eEe~AAk~~~~PFwrIss 209 (242)
|-|..--=+|||..+|-.+=|..
T Consensus 165 iEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 165 VEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EecchhHHHHHHHCCCEEEEecC
Confidence 99999999999999999999986
No 164
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=38.50 E-value=2.3e+02 Score=26.17 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=60.8
Q ss_pred CcceEEEEcCCcchHH--HHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCH---------HHH
Q psy8471 126 STCTNVIVTCTQLVPA--LAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQ---------DEE 194 (242)
Q Consensus 126 ~~~vNVLVTttqLVPa--LAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~---------eEe 194 (242)
...+.|+.+++.+-+. --|-++=.-....|.-++++-.-..-.+.|+.=..++ +.++++++.|.. -.+
T Consensus 198 ~~~~pv~~gs~~~~~~a~~~~~~~~Ena~~~~~~~~~pe~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~ 276 (337)
T PRK08674 198 YGRIPVIYGSGLTLAVAYRWKTQINENAKYPAFYNEIPELNHNEIVGYERPQSLL-KYFFVVVLRDSEHPRIKKRVEITI 276 (337)
T ss_pred hCCCCEEEeCcccHHHHHHHHHHHHHhcCCccccccCCcccccceeeccCchhhc-cceEEEEEcCCccHHHHHHHHHHH
Confidence 3458888886555543 4577787777888888888877777777777643444 568888887764 124
Q ss_pred HHHHHcCCceeEecccc
Q psy8471 195 AAAKQNNFPFWRVSSHS 211 (242)
Q Consensus 195 ~AAk~~~~PFwrIssh~ 211 (242)
++++..+.|+..|....
T Consensus 277 ~~~~~~~~~~~~i~~~g 293 (337)
T PRK08674 277 DILTEAVINVIEIYPEG 293 (337)
T ss_pred HHHHhcCCCeEEEecCC
Confidence 46666899999999984
No 165
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.49 E-value=67 Score=33.19 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCC-c-eeEecccccHHHHHHhhhhchh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNF-P-FWRVSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~-P-FwrIssh~Dl~~L~~AL~~~~l 225 (242)
-|.++.++ .+++++++||||.++++ -++++++ . +.-+...+|+..++.+.+.-.+
T Consensus 419 A~a~llk~-~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVl 478 (578)
T PRK15490 419 FAARYLQH-HPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFIL 478 (578)
T ss_pred HHHHHHhH-CCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEE
Confidence 34444444 37899999999987653 4566665 3 3334457889988888766433
No 166
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=38.19 E-value=3.8e+02 Score=25.96 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHhhCCcceEEEE-cCCcchHHHHHHHHhhcCCccccCccc
Q psy8471 89 LGPTKREQWLQLRAEI-------ESTTDNWLSLAIKCLNIINSRSTCTNVIV-TCTQLVPALAKVLLFGLGDIFQVENIY 160 (242)
Q Consensus 89 L~~~kr~~w~~lr~e~-------e~~Td~WLs~A~k~L~~i~sR~~~vNVLV-TttqLVPaLAK~LLygL~~~fpiENIY 160 (242)
+|...-+.|.+--+++ +.+-+..-..+++.|+-.+.+-...-|.| +.+..+-++++.|+-.||--+..=+.+
T Consensus 271 ~G~~~t~~~l~~la~~~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~ 350 (443)
T TIGR01862 271 FGFTYTAESLRAIAAFFGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYE 350 (443)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhHHHHHHHHHHHCCCEEEEeccc
Confidence 5666666776443322 22222233344555554445544555655 445666699997777776554332222
Q ss_pred cc----------------cccChhHHHH--HHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecc
Q psy8471 161 SS----------------TKIGKESCFE--RIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 161 Sa----------------~kiGKesCFe--rI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIss 209 (242)
.. -.++..+-+| .+..+.++. ++||... |..+|+++++||.++..
T Consensus 351 ~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~i~~~~pd---llig~s~-~~~~A~~lgip~~~~~~ 413 (443)
T TIGR01862 351 FAHEDDYEKTMKRMGEGTLLIDDPNELEFEEILEKLKPD---IIFSGIK-EKFVAQKLGVPYRQMHS 413 (443)
T ss_pred cccHHHHHHHHHhCCCceEEecCCCHHHHHHHHHhcCCC---EEEEcCc-chhhhhhcCCCeEecCC
Confidence 10 0122222232 233444444 5667764 46788889999999853
No 167
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=37.59 E-value=67 Score=28.97 Aligned_cols=40 Identities=20% Similarity=0.031 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 180 RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 180 ~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
.++.++|||. -..++|++++|.-..|..+++-.+|-.|+.
T Consensus 218 ~~~~~v~is~--rtA~~a~~~G~~~v~vA~~~~~~~l~~a~~ 257 (266)
T PRK08811 218 QQRPVVASSD--RLLDAAHAAGFIHVMRAAGPLPAQLAAAAA 257 (266)
T ss_pred hCCCEEEeCH--HHHHHHHHcCCCceeeCCCCCHHHHHHHHH
Confidence 5788999976 477789999999999999999999988874
No 168
>PRK08238 hypothetical protein; Validated
Probab=37.29 E-value=3.5e+02 Score=26.92 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=47.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccc----cChhHHHHHHHH
Q psy8471 101 RAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTK----IGKESCFERIGT 176 (242)
Q Consensus 101 r~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~k----iGKesCFerI~~ 176 (242)
+..+|.-+-.+...+.+.++...++ ..-=+|+|++.- .+++-++=.+|- .+.|.++-. .|+.. -+++++
T Consensus 63 ~~~~d~~~lp~~pga~e~L~~lk~~-G~~v~LaTas~~--~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K-~~~l~~ 135 (479)
T PRK08238 63 RVDLDVATLPYNEEVLDYLRAERAA-GRKLVLATASDE--RLAQAVAAHLGL---FDGVFASDGTTNLKGAAK-AAALVE 135 (479)
T ss_pred hcCCChhhCCCChhHHHHHHHHHHC-CCEEEEEeCCCH--HHHHHHHHHcCC---CCEEEeCCCccccCCchH-HHHHHH
Confidence 3344443333445566666665443 344467777643 223322222221 233443321 12222 357889
Q ss_pred hhCCC-cEEEEEcCCHHHHHHHHHcCCce
Q psy8471 177 RFGRK-VTYVVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 177 RFG~k-~tyvvIGDG~eEe~AAk~~~~PF 204 (242)
++|.+ + +.|||...--.+++.-+-|+
T Consensus 136 ~l~~~~~--~yvGDS~~Dlp~~~~A~~av 162 (479)
T PRK08238 136 AFGERGF--DYAGNSAADLPVWAAARRAI 162 (479)
T ss_pred HhCccCe--eEecCCHHHHHHHHhCCCeE
Confidence 99864 5 45688876655555555443
No 169
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=37.02 E-value=42 Score=30.27 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.0
Q ss_pred hCCCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 178 FGRKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 178 FG~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
+|++.+=||++|+ +.++.||..|.+|+
T Consensus 68 ~gk~~kI~Vfa~~-~~~~~Ak~aGa~~v 94 (230)
T PRK05424 68 TGKTVRVAVFAKG-EKAEEAKAAGADIV 94 (230)
T ss_pred CCCCcEEEEECCh-HhHHHHHHcCCCEe
Confidence 4788899999998 55667899999875
No 170
>KOG1099|consensus
Probab=36.68 E-value=36 Score=32.35 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=33.1
Q ss_pred hhcCCccccCcccccc-ccChhHHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 148 FGLGDIFQVENIYSST-KIGKESCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 148 ygL~~~fpiENIYSa~-kiGKesCFerI~~RFG~k~tyvvIGDG~ 191 (242)
..|-++-|||-|---- .|-+.+|-|+|++.||.--.=.||.||.
T Consensus 80 VDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 80 VDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGA 124 (294)
T ss_pred EecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence 3577889999886543 4779999999999997744445667873
No 171
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=36.21 E-value=41 Score=30.78 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCChhhHHHHHHHHHH-HhhhhhhHHHHH
Q psy8471 64 MRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAE-IESTTDNWLSLA 115 (242)
Q Consensus 64 mRKLAfRyrrIke~Y~~yk~~v~gLL~~~kr~~w~~lr~e-~e~~Td~WLs~A 115 (242)
++.|+||||.= |....|+..+++.|.+-+.. +..-.++|++..
T Consensus 193 L~eLlfRyraR---------N~P~tL~~~E~~~W~~~~~~rL~~~~~~~~tl~ 236 (269)
T PF08411_consen 193 LPELLFRYRAR---------NFPETLSEEEQQRWQEYCQQRLTDPDGGWLTLE 236 (269)
T ss_dssp HHHHHHHHHHH---------H-GGG--HHHHHHHHHHHHHHS-HHH-----HH
T ss_pred HHHHHHHHHHh---------cChhhCCHHHHHHHHHHHHHHccCCccchHHHH
Confidence 67778888864 77788999999999997743 333337777765
No 172
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.84 E-value=4.1e+02 Score=25.57 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCChhhHHHHHHHHHHH-h----hhhhhHHHHHHHHHHHHhhCCcceE-EEEcCCcchHHHHHHHHhhcCCccccCccc
Q psy8471 87 GLLGPTKREQWLQLRAEI-E----STTDNWLSLAIKCLNIINSRSTCTN-VIVTCTQLVPALAKVLLFGLGDIFQVENIY 160 (242)
Q Consensus 87 gLL~~~kr~~w~~lr~e~-e----~~Td~WLs~A~k~L~~i~sR~~~vN-VLVTttqLVPaLAK~LLygL~~~fpiENIY 160 (242)
-.+|...-+.|..--+++ . ..-...-..++..+.-.+.+-.-.. +++....++-+++|.|. .||--+..=-.+
T Consensus 257 ~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~-elGm~v~~~~~~ 335 (435)
T cd01974 257 MPIGVAATDEFLMALSELTGKPIPEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLL-ELGMEPVHVLTG 335 (435)
T ss_pred CCcChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHH-HCCCEEEEEEeC
Confidence 456777777777544332 1 1111111112223333333333333 44466778899999998 787655331111
Q ss_pred cccccChhH--------------------HHHHHHHhh-CCCcEEEEEcCCHHHHHHHHHcCCceeEeccc
Q psy8471 161 SSTKIGKES--------------------CFERIGTRF-GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 161 Sa~kiGKes--------------------CFerI~~RF-G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh 210 (242)
...+.-+++ =++.+.++. ..++. ++||... |...|++++.||.+++..
T Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pD-liiG~s~-~~~~a~~~gip~v~~~~P 404 (435)
T cd01974 336 NGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVD-LLIGNTY-GKYIARDTDIPLVRFGFP 404 (435)
T ss_pred CCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCC-EEEECcc-HHHHHHHhCCCEEEeeCC
Confidence 110000000 022222222 11222 4677774 678889999999999853
No 173
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=35.50 E-value=64 Score=26.16 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=41.6
Q ss_pred ccccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHH
Q psy8471 162 STKIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLA 214 (242)
Q Consensus 162 a~kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~ 214 (242)
+..+.|.+-.+++.+.+| +....++|||+.--.+--+..+.+|.-=++++.+.
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k 235 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELK 235 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHH
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHH
Confidence 345789999999999998 66899999999877777777788876666665553
No 174
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.37 E-value=96 Score=25.95 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHHHhhC------CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 169 SCFERIGTRFG------RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 169 sCFerI~~RFG------~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
+.++.+.+.++ +++.+++|| +-..+++++++|+-..+..+|+..+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~ig--~~ta~~l~~~g~~~~~va~~~~~~~l 229 (231)
T PF02602_consen 178 SAVRAFLELLKKNGALLKRVPIVAIG--PRTAKALRELGFKVDIVAERPTIEAL 229 (231)
T ss_dssp HHHHHHHHHSSGHHHHHTTSEEEESS--HHHHHHHHHTT-SCSEEESSSSHHHH
T ss_pred HHHHHHHHHhHhhhhhhhCCEEEEEC--HHHHHHHHHcCCCceEECCCCChhHh
Confidence 45555555555 368888885 56888999999999999999998876
No 175
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=34.25 E-value=3.5e+02 Score=24.33 Aligned_cols=77 Identities=25% Similarity=0.204 Sum_probs=47.0
Q ss_pred ceEEEEcCCcchHHHHHHH-HhhcCCcccc--Cccccccc---cCh-hHHHHHHHHhhCCCcEEEEEcCCHH---HHHHH
Q psy8471 128 CTNVIVTCTQLVPALAKVL-LFGLGDIFQV--ENIYSSTK---IGK-ESCFERIGTRFGRKVTYVVIGDGQD---EEAAA 197 (242)
Q Consensus 128 ~vNVLVTttqLVPaLAK~L-LygL~~~fpi--ENIYSa~k---iGK-esCFerI~~RFG~k~tyvvIGDG~e---Ee~AA 197 (242)
.+-|+||..++ -++...+ .|++..-+++ .. .+.+. .|+ ..-|.++.+++.+.+..|. ||..+ -..||
T Consensus 30 ~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~-gd~~~~la~a~aa 106 (365)
T TIGR00236 30 DSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQ-GDTTTTLAGALAA 106 (365)
T ss_pred CEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEe-CCchHHHHHHHHH
Confidence 46688888887 3333333 3555533322 22 22222 221 2558888899999887766 77633 24578
Q ss_pred HHcCCceeEe
Q psy8471 198 KQNNFPFWRV 207 (242)
Q Consensus 198 k~~~~PFwrI 207 (242)
+.+++|...+
T Consensus 107 ~~~~ipv~h~ 116 (365)
T TIGR00236 107 FYLQIPVGHV 116 (365)
T ss_pred HHhCCCEEEE
Confidence 9999999876
No 176
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=34.24 E-value=54 Score=27.26 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHH-----HHHcCCc-eeEe---cccccHHHHHHhhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAA-----AKQNNFP-FWRV---SSHSDLAALYNALDM 222 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~A-----Ak~~~~P-FwrI---ssh~Dl~~L~~AL~~ 222 (242)
.+|+++.++ ++++.++++|++.++... +++.+.+ .+++ -++.++..++.+.+.
T Consensus 223 ~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv 284 (375)
T cd03821 223 EAFAKLAER-FPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADL 284 (375)
T ss_pred HHHHHhhhh-cCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCE
Confidence 456666666 688999999987543221 1344442 2222 233467777776554
No 177
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.10 E-value=2.7e+02 Score=23.02 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=40.3
Q ss_pred CccccccccChhHHHHHHHHhhCC-CcEEEEEcCCH-----------HHHHHHHHcCCceeEecccccHHHHH
Q psy8471 157 ENIYSSTKIGKESCFERIGTRFGR-KVTYVVIGDGQ-----------DEEAAAKQNNFPFWRVSSHSDLAALY 217 (242)
Q Consensus 157 ENIYSa~kiGKesCFerI~~RFG~-k~tyvvIGDG~-----------eEe~AAk~~~~PFwrIssh~Dl~~L~ 217 (242)
.+.|+++|.+-++..+.+...+++ +++..+|.-|. +|....-+...|+++...-.|+....
T Consensus 156 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 228 (253)
T PRK08642 156 YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAV 228 (253)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 468999999999999999888864 47766664321 22222233467888865555555443
No 178
>PLN02828 formyltetrahydrofolate deformylase
Probab=34.02 E-value=78 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHhh--CC-CcEE-EEEcCCH-----HHHHHHHHcCCceeEecc
Q psy8471 166 GKESCFERIGTRF--GR-KVTY-VVIGDGQ-----DEEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 166 GKesCFerI~~RF--G~-k~ty-vvIGDG~-----eEe~AAk~~~~PFwrIss 209 (242)
|.-+||+-|..|+ |. ++.= +||++-. +-.+.|+++++||..+..
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 4459999999998 43 3333 4445542 567789999999997754
No 179
>PRK05717 oxidoreductase; Validated
Probab=33.66 E-value=2.1e+02 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.4
Q ss_pred ccCccccccccChhHHHHHHHHhhCCCcEEEEEcCC
Q psy8471 155 QVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDG 190 (242)
Q Consensus 155 piENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG 190 (242)
|--+.|+++|.+=+.-.+.+..+++++++..+|.-|
T Consensus 152 ~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg 187 (255)
T PRK05717 152 PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPG 187 (255)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 445789999999999999999999888888888765
No 180
>KOG1111|consensus
Probab=33.42 E-value=78 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHhhCCCcEEEEEcCCH-----HHHHHHHHcCCceeEecccccHHHHHHhhhhchh
Q psy8471 173 RIGTRFGRKVTYVVIGDGQ-----DEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225 (242)
Q Consensus 173 rI~~RFG~k~tyvvIGDG~-----eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l 225 (242)
++.+++ |+++|+++|||+ ||-.---.+++|..-+.+-+- ..+..+|-.|..
T Consensus 219 ~vc~~~-p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h-~~Vr~vl~~G~I 274 (426)
T KOG1111|consen 219 SVCDKH-PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPH-DRVRDVLVRGDI 274 (426)
T ss_pred HHHhcC-CCeeEEEecCCcccchHHHHHHHhhccCceEEecccch-HHHHHHHhcCcE
Confidence 333333 999999999998 444445568888888877332 344555555544
No 181
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.40 E-value=91 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhC-Cc---ceEEEEcCCcchHHHHHHH
Q psy8471 114 LAIKCLNIINSR-ST---CTNVIVTCTQLVPALAKVL 146 (242)
Q Consensus 114 ~A~k~L~~i~sR-~~---~vNVLVTttqLVPaLAK~L 146 (242)
.+.++++.+... .- ..++-|+|..++|.+.|+.
T Consensus 166 ~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~ 202 (342)
T PRK14454 166 NVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELA 202 (342)
T ss_pred HHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHH
Confidence 345566666542 21 2388999999999877664
No 182
>KOG0767|consensus
Probab=33.33 E-value=19 Score=34.60 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhCCCcEEE-EEcCCHHHHHHHHHcCCcee
Q psy8471 167 KESCFERIGTRFGRKVTYV-VIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 167 KesCFerI~~RFG~k~tyv-vIGDG~eEe~AAk~~~~PFw 205 (242)
|-.|||||+|-. |- ||+--++|+..+.|+..-|.
T Consensus 207 KFa~FEr~vE~l-----Y~~vvpkpk~ecsk~eql~Vtf~ 241 (333)
T KOG0767|consen 207 KFACFERTVELL-----YKYVVPKPKAECSKAEQLGVTFA 241 (333)
T ss_pred HHHHHHHHHHHH-----HHHhcCCchHHcChHhhhhhhhH
Confidence 789999999987 33 67778899999999998875
No 183
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.33 E-value=65 Score=26.38 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=35.0
Q ss_pred cccCccccccccChhHHHHHHHHhhCCCcEEEEEc-----CCHHHHHH------HHH----cCCceeEecccc
Q psy8471 154 FQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIG-----DGQDEEAA------AKQ----NNFPFWRVSSHS 211 (242)
Q Consensus 154 fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIG-----DG~eEe~A------Ak~----~~~PFwrIssh~ 211 (242)
.|++.+.......-..-++.|.+.++ +.-+||| ||.+-++| |++ .++|+.-++-+-
T Consensus 23 ~pl~~i~~~~~~~~~~~l~~~i~~~~--~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 23 QGIPTIKAQDGEPDWSRIEELLKEWT--PDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred eceEEEEecCCcHHHHHHHHHHHHcC--CCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 46666655332223455666677776 5679999 99877733 222 478888776543
No 184
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=33.24 E-value=1.8e+02 Score=26.29 Aligned_cols=124 Identities=21% Similarity=0.295 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccc-----c-ccccChhHHHHHHHHh----
Q psy8471 108 TDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIY-----S-STKIGKESCFERIGTR---- 177 (242)
Q Consensus 108 Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIY-----S-a~kiGKesCFerI~~R---- 177 (242)
...|...|.++++.|.+| +-+=|||--|.| -.|-||+|+...-+.+.-- . ..+.|.+..++++++.
T Consensus 38 v~~f~~~a~~~i~~i~~r-gk~PIlvGGTgl---Yi~all~g~~~~p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~ 113 (253)
T PF01715_consen 38 VGDFQRDAREAIEDILAR-GKIPILVGGTGL---YIQALLNGLADIPEVDPELRAELRAELEEEGNEELYEELKEVDPEA 113 (253)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-EEEEEES-HH---HHHHHHCTS--TSSSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEECChHH---HHHHHHhChhhhccccHHHHHHHHHHHHhccHHHHHHHHHhhCcHh
Confidence 357889999999999988 567788877776 5788899997543332111 0 1346899999888754
Q ss_pred ---hCCCcE---------EEEEcCCHHHHHHH--HHcCCceeEecccccHHHHHHhhhhchh-hhhhchhhhh
Q psy8471 178 ---FGRKVT---------YVVIGDGQDEEAAA--KQNNFPFWRVSSHSDLAALYNALDMGFL-IVEEGLVGTL 235 (242)
Q Consensus 178 ---FG~k~t---------yvvIGDG~eEe~AA--k~~~~PFwrIssh~Dl~~L~~AL~~~~l-~~~~~~~~~~ 235 (242)
..++=+ |-.-|-...+-... ....+++-.|-..+|-..|+..++.-.- |++.||+...
T Consensus 114 A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv 186 (253)
T PF01715_consen 114 AAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLDRDREELYERINKRVDEMLEQGLLEEV 186 (253)
T ss_dssp HCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEESSHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 222200 11123333333332 2355677777778888888888877666 8888877543
No 185
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=33.21 E-value=92 Score=22.97 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHH--HHHHcCCc
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEA--AAKQNNFP 203 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~--AAk~~~~P 203 (242)
=++++.+.|..++..++|.|+..|+. -+++++++
T Consensus 42 ~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 42 VIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLE 77 (114)
T ss_pred HHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCC
Confidence 36777777866788888877644333 45666654
No 186
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=33.08 E-value=1.8e+02 Score=26.81 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhCCcceEEEEcCCc---chHHHHHHHHhhcCCccccCcccccc-ccChhHHHHHHHHhhCCCcEEEE
Q psy8471 111 WLSLAIKCLNIINSRSTCTNVIVTCTQ---LVPALAKVLLFGLGDIFQVENIYSST-KIGKESCFERIGTRFGRKVTYVV 186 (242)
Q Consensus 111 WLs~A~k~L~~i~sR~~~vNVLVTttq---LVPaLAK~LLygL~~~fpiENIYSa~-kiGKesCFerI~~RFG~k~tyvv 186 (242)
++.-|..+|+.+.++ ..--++||+.. .-.++..+--+|+..++ .+.|+.-. .-.|+..++.|.++|.- .+.
T Consensus 119 ~ipGA~e~L~~L~~~-G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~~K~~rr~~I~~~y~I---vl~ 193 (266)
T TIGR01533 119 PVAGALDFLNYANSK-GVKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKSSKESRRQKVQKDYEI---VLL 193 (266)
T ss_pred cCccHHHHHHHHHHC-CCeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCCCcHHHHHHHHhcCCE---EEE
Confidence 345566777777665 33456778754 33445555567876543 34555332 24699999999986643 799
Q ss_pred EcCCHHHH
Q psy8471 187 IGDGQDEE 194 (242)
Q Consensus 187 IGDG~eEe 194 (242)
|||...--
T Consensus 194 vGD~~~Df 201 (266)
T TIGR01533 194 FGDNLLDF 201 (266)
T ss_pred ECCCHHHh
Confidence 99996544
No 187
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.98 E-value=58 Score=32.68 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEeccccc-HHHHHHhhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSD-LAALYNALDM 222 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~D-l~~L~~AL~~ 222 (242)
+|.+.+++ ..+. +||||+ =..+.|+++|+|..-|.+... ..++.+|+++
T Consensus 136 ~~~~~l~~---~G~~-~viG~~-~~~~~A~~~gl~~ili~s~esi~~a~~~A~~~ 185 (526)
T TIGR02329 136 SCVNDLRA---RGIG-AVVGAG-LITDLAEQAGLHGVFLYSADSVRQAFDDALDV 185 (526)
T ss_pred HHHHHHHH---CCCC-EEECCh-HHHHHHHHcCCceEEEecHHHHHHHHHHHHHH
Confidence 44455444 2332 678999 557788999999999988522 3345555544
No 188
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.98 E-value=52 Score=29.16 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHhh--CC-C-cEEEEEcCCHH--HHHHHHHcCCceeEeccc
Q psy8471 166 GKESCFERIGTRF--GR-K-VTYVVIGDGQD--EEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 166 GKesCFerI~~RF--G~-k-~tyvvIGDG~e--Ee~AAk~~~~PFwrIssh 210 (242)
|.-+||+-|...+ |+ + ..-+||+|.++ -.+-|+++|+|+..++..
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccc
Confidence 4559999999988 43 2 44567777543 346789999999887653
No 189
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=32.96 E-value=1.1e+02 Score=26.69 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCcceEEEEcCCcchHH---H-----HHHHHhhcCCccccCccccccccChhHHHHHHHHhhCC----CcE
Q psy8471 116 IKCLNIINSRSTCTNVIVTCTQLVPA---L-----AKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR----KVT 183 (242)
Q Consensus 116 ~k~L~~i~sR~~~vNVLVTttqLVPa---L-----AK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~----k~t 183 (242)
++.+..+......+.+.+-++.+..- + .+. |..+... ...-.+-|.+| ++|+...+.+++ +.+
T Consensus 78 l~~~~~l~~~~~~~~~f~F~~~l~~vT~~l~~~~~~~~-l~~~~~~--~~~~~GgTdi~--~aL~~~~~~~~~~~~~~t~ 152 (222)
T PF05762_consen 78 LAFLYALQRQFRRVRVFVFSTRLTEVTPLLRRRDPEEA-LARLSAL--VQSFGGGTDIG--QALREFLRQYARPDLRRTT 152 (222)
T ss_pred HHHHHHHHHhCCCEEEEEEeeehhhhhhhhccCCHHHH-HHHHHhh--ccCCCCccHHH--HHHHHHHHHhhcccccCcE
Confidence 34444454554467777777666532 1 111 2222111 11245666777 899999999863 579
Q ss_pred EEEEcCCH
Q psy8471 184 YVVIGDGQ 191 (242)
Q Consensus 184 yvvIGDG~ 191 (242)
.|+|+||.
T Consensus 153 vvIiSDg~ 160 (222)
T PF05762_consen 153 VVIISDGW 160 (222)
T ss_pred EEEEeccc
Confidence 99999994
No 190
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=32.75 E-value=5.3e+02 Score=26.01 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=69.4
Q ss_pred HHHHHHhh-cccCCCCCCChhhHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHhhCCcceEE-EEcCCcchHHHH
Q psy8471 73 KIKDTYNN-YRNSVGGLLGPTKREQWLQLRAE-------IESTTDNWLSLAIKCLNIINSRSTCTNV-IVTCTQLVPALA 143 (242)
Q Consensus 73 rIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e-------~e~~Td~WLs~A~k~L~~i~sR~~~vNV-LVTttqLVPaLA 143 (242)
.+++.|.. |- .+. .+|-..-+.|+..-++ .|++-.......+.-|+....+-.--.| |.+-+.++-+++
T Consensus 267 ~Leer~GiP~~-~~~-~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~~~~~ 344 (513)
T TIGR01861 267 ELRKRYGIPRL-DID-GFGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGSKLWHWA 344 (513)
T ss_pred HHHHHhCCCeE-ecC-cCCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHH
Confidence 45666655 32 233 4677766777643332 2223333333444445544455444444 455688999999
Q ss_pred HHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEE-------------------EEEcCCHHHHHHHHHcCCce
Q psy8471 144 KVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTY-------------------VVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 144 K~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~ty-------------------vvIGDG~eEe~AAk~~~~PF 204 (242)
+.|.=.||- |=+-..++.++..=|++++++-+..... ++||.+ -|...|+++++||
T Consensus 345 ~~l~~ElGm----evv~~~t~~~~~~d~~~~~~~~~~~~~~i~D~~~~e~~~~l~~~~~Dllig~s-~~~~~A~k~gIP~ 419 (513)
T TIGR01861 345 HVIEEEMGL----KVVSVYSKFGHQGDMEKGVARCGEGALAIDDPNELEGLEAMEMLKPDIILTGK-RPGEVSKKMRVPY 419 (513)
T ss_pred HHHHHhCCC----EEEEEeccCCCHHHHHHHHHhCCCCcEEecCCCHHHHHHHHHhcCCCEEEecC-ccchhHhhcCCCE
Confidence 999844443 2233444444445556666655443111 233433 2446888899999
Q ss_pred eEe
Q psy8471 205 WRV 207 (242)
Q Consensus 205 wrI 207 (242)
.++
T Consensus 420 ld~ 422 (513)
T TIGR01861 420 LNA 422 (513)
T ss_pred EEc
Confidence 876
No 191
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=32.71 E-value=6.6e+02 Score=27.10 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHhh-cccCCCCCCChhhHHHHHHHHHHH-hhhhhhHHHHHH-HHHHH---HhhC--CcceEEEE
Q psy8471 62 DWMRKLAFRYRKIKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI-ESTTDNWLSLAI-KCLNI---INSR--STCTNVIV 133 (242)
Q Consensus 62 dwmRKLAfRyrrIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~-e~~Td~WLs~A~-k~L~~---i~sR--~~~vNVLV 133 (242)
+||.+.| +.++|.|.. |. .+..++|...-+.|+.--+++ ..-....+...+ +.++. .+.. .+-+ .+.
T Consensus 719 ~~~~~~A---~~Leek~GiP~~-~~~~p~G~~~Td~fl~~l~~~~g~~~~~~~~~~r~~~~d~~~d~~~~l~gkrv-ai~ 793 (917)
T PRK14477 719 DSLARAA---EKLQERFGIPAY-GFTSLTGLKEVDRFMATLSALSGRPVPEKLRRWRSRLMDAMVDSHYQFGGKKV-ALA 793 (917)
T ss_pred HhHHHHH---HHHHHHHCCCee-ecCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEE-EEE
Confidence 7898888 778899977 33 345567888888887544432 110011111111 12222 2222 2233 556
Q ss_pred cCCcchHHHHHHHHhhcCCcccc--Cccccc---------cccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCC
Q psy8471 134 TCTQLVPALAKVLLFGLGDIFQV--ENIYSS---------TKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNF 202 (242)
Q Consensus 134 TttqLVPaLAK~LLygL~~~fpi--ENIYSa---------~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~ 202 (242)
+-+.++-++++.|. .||--+.. .+.++. ..++-..-||. +. .++. ++||++ -|..+|++++.
T Consensus 794 ~~~d~~~~l~~~l~-elG~~v~~~~~~~~~~~~~~l~~~~v~v~D~~~~e~---~~-~~~d-llig~s-~~~~~A~~l~i 866 (917)
T PRK14477 794 LEPDLLKALTSFLA-GMGCEIQAAVAATRSRGLDRLPAENVFVGDLEDLET---AA-AGAD-LLVANS-NGRQAAARLGI 866 (917)
T ss_pred eChHHHHHHHHHHH-HcCCeEEEEEeCCChHHHHhCCcCcEEeCCHHHHHh---hc-cCCC-EEEECc-hHHHHHHHcCC
Confidence 67778888999988 88875443 111110 01123344554 21 2232 456777 45778999999
Q ss_pred -ceeEecccc
Q psy8471 203 -PFWRVSSHS 211 (242)
Q Consensus 203 -PFwrIssh~ 211 (242)
||.|+..+.
T Consensus 867 ~p~~r~g~Pi 876 (917)
T PRK14477 867 KAHLRAGLPV 876 (917)
T ss_pred CceEEecCCc
Confidence 999988864
No 192
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=32.53 E-value=54 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.9
Q ss_pred hCCCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 178 FGRKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 178 FG~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
+|++.+=||++|| +.++.|+..|.+|+
T Consensus 67 ~gk~~kV~Vfa~~-~~~~~Ak~aGa~~v 93 (227)
T TIGR01169 67 TGKTVRVAVFAKG-EKAEEAKAAGADYV 93 (227)
T ss_pred CCCCcEEEEEcCc-hhHHHHHHcCCCEe
Confidence 4678888999998 56777899998865
No 193
>KOG1089|consensus
Probab=32.52 E-value=1.3e+02 Score=31.27 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHh-----hCCcceEEEEc------CCcchHHHHHHHH
Q psy8471 108 TDNWLSLAIKCLNIIN-----SRSTCTNVIVT------CTQLVPALAKVLL 147 (242)
Q Consensus 108 Td~WLs~A~k~L~~i~-----sR~~~vNVLVT------ttqLVPaLAK~LL 147 (242)
+-+||.+.+.+|+-.. =+++.++|||= .|..|-+||++||
T Consensus 319 ~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 319 SSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 4589999888887531 22455999995 4678999999997
No 194
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=32.50 E-value=83 Score=26.88 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=39.3
Q ss_pred ccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccH
Q psy8471 164 KIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDL 213 (242)
Q Consensus 164 kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl 213 (242)
.+.|.+..+++.+++| ..-.-++|||+.---+.++..++++--=+.++++
T Consensus 197 ~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~l 247 (272)
T PRK10530 197 GNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAMGNADDAV 247 (272)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEecCchHHH
Confidence 3569999999999998 4456899999999999999999887433444444
No 195
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=32.50 E-value=84 Score=27.74 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=34.6
Q ss_pred hHHHHHHHHhh--CCCcEEEEEcCCHH----------H-HHHHHH-cCC----ceeEecccccHHHHHHhhhh
Q psy8471 168 ESCFERIGTRF--GRKVTYVVIGDGQD----------E-EAAAKQ-NNF----PFWRVSSHSDLAALYNALDM 222 (242)
Q Consensus 168 esCFerI~~RF--G~k~tyvvIGDG~e----------E-e~AAk~-~~~----PFwrIssh~Dl~~L~~AL~~ 222 (242)
..+|+++++++ .++++++++|+|.. | ++.+++ ++. -|.---++.++..++.+.+.
T Consensus 230 l~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~ 302 (392)
T cd03805 230 IEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARA 302 (392)
T ss_pred HHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeE
Confidence 67899998887 48999999999853 1 234455 443 23222234455666666554
No 196
>KOG2599|consensus
Probab=32.44 E-value=1.1e+02 Score=29.58 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=55.3
Q ss_pred CccCCCccchhhhHHHHHHHHHHHHHHHhhcccCCCCCCChhhH----HHHHHHHH---------------HHhhhhhh-
Q psy8471 51 LCLSSGVRGGVDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKR----EQWLQLRA---------------EIESTTDN- 110 (242)
Q Consensus 51 lc~~~~vrggvdwmRKLAfRyrrIke~Y~~yk~~v~gLL~~~kr----~~w~~lr~---------------e~e~~Td~- 110 (242)
-|+-||--|+++.+||++--++.+|+.-.+-.==.+..+|+..| ++....|. |+|.+|+.
T Consensus 83 ~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~ 162 (308)
T KOG2599|consen 83 DAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGME 162 (308)
T ss_pred ceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCCe
Confidence 46678999999999999888888877654422112233343322 22222221 44555543
Q ss_pred --HHHHHHHHHHHHhhCCcceEEEEcCCcch
Q psy8471 111 --WLSLAIKCLNIINSRSTCTNVIVTCTQLV 139 (242)
Q Consensus 111 --WLs~A~k~L~~i~sR~~~vNVLVTttqLV 139 (242)
=...|.++++.++++- -=+|+|||.-+=
T Consensus 163 I~t~eda~~a~~~lhq~~-v~~vVITS~~~~ 192 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKG-VKTVVITSFDLG 192 (308)
T ss_pred eccHHHHHHHHHHHHHhC-CCEEEEEeeeeC
Confidence 2356789999999997 668899987653
No 197
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=32.13 E-value=79 Score=26.38 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCHHHHHHHHHc-CCceeEec---ccccHHHHHHhhhhchhhh--hhchhhhhhh
Q psy8471 180 RKVTYVVIGDGQDEEAAAKQN-NFPFWRVS---SHSDLAALYNALDMGFLIV--EEGLVGTLAE 237 (242)
Q Consensus 180 ~k~tyvvIGDG~eEe~AAk~~-~~PFwrIs---sh~Dl~~L~~AL~~~~l~~--~~~~~~~~~~ 237 (242)
+++.++++|++.++....+.. .-+.+++- ...++..++.+.+.-.+-- .++.-.++.|
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~E 282 (359)
T cd03823 219 GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIRE 282 (359)
T ss_pred cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHH
Confidence 689999999998776644331 11222222 2467888888877654421 3444444444
No 198
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=31.89 E-value=61 Score=30.92 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=34.8
Q ss_pred HHHHHHHHhh--C-CCcE-EEEEcCCHHHHHHHHHcCCceeEecccccH
Q psy8471 169 SCFERIGTRF--G-RKVT-YVVIGDGQDEEAAAKQNNFPFWRVSSHSDL 213 (242)
Q Consensus 169 sCFerI~~RF--G-~k~t-yvvIGDG~eEe~AAk~~~~PFwrIssh~Dl 213 (242)
.|+.-+.=|. | -++. =.|||...|=+.-|.++++||..|...++-
T Consensus 102 HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~ 150 (287)
T COG0788 102 HCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN 150 (287)
T ss_pred HHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc
Confidence 6887776553 4 3343 467888888888999999999999998883
No 199
>PRK09134 short chain dehydrogenase; Provisional
Probab=31.80 E-value=1.8e+02 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=28.7
Q ss_pred ccCccccccccChhHHHHHHHHhhCCCcEEEEEcCC
Q psy8471 155 QVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDG 190 (242)
Q Consensus 155 piENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG 190 (242)
|.-..|+++|.+=+.-.+.+...++++++.++|.=|
T Consensus 154 p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG 189 (258)
T PRK09134 154 PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPG 189 (258)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Confidence 334579999999888888888888877888888665
No 200
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.52 E-value=18 Score=31.21 Aligned_cols=17 Identities=53% Similarity=0.991 Sum_probs=13.9
Q ss_pred cccChhHHHHHHHHhhCCC
Q psy8471 163 TKIGKESCFERIGTRFGRK 181 (242)
Q Consensus 163 ~kiGKesCFerI~~RFG~k 181 (242)
..||+| ||+|+.+||+.
T Consensus 6 ~~Ig~E--fE~lId~~G~e 22 (158)
T PF09744_consen 6 SSIGKE--FERLIDRYGEE 22 (158)
T ss_pred HHHHHH--HHHHHHHhChh
Confidence 457877 99999999865
No 201
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=31.38 E-value=71 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc-eeEe---cccccHHHHHHhhhhc
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP-FWRV---SSHSDLAALYNALDMG 223 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P-FwrI---ssh~Dl~~L~~AL~~~ 223 (242)
.+++++..+ ++++.++++|+|.++++ .+++++.+ .+++ -...++.+++.+.+..
T Consensus 199 ~~~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~ 259 (355)
T cd03799 199 EALALLKDR-GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLF 259 (355)
T ss_pred HHHHHHhhc-CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEE
Confidence 455555555 68999999999976543 34445443 3333 2346778887776643
No 202
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=31.26 E-value=50 Score=28.07 Aligned_cols=59 Identities=27% Similarity=0.378 Sum_probs=41.5
Q ss_pred cccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHH------cCCceeEecccccHHHHH
Q psy8471 159 IYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQ------NNFPFWRVSSHSDLAALY 217 (242)
Q Consensus 159 IYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~------~~~PFwrIssh~Dl~~L~ 217 (242)
|.+-++-||-+==|++..++|+++.|++-+.-.|+|-++|. -.-.|..|..-.|+....
T Consensus 3 v~GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~D~em~~RI~~H~~~R~~~w~tiE~~~~l~~~~ 67 (167)
T PF02283_consen 3 VTGGARSGKSSFAERLALSFGGPVTYIATARPFDEEMRERIARHRQRRPKGWITIEEPRDLAEAL 67 (167)
T ss_dssp EEESTTSSHHHHHHHHHTS--SCEEEEESSHHHHHHHHHHHHHHHHHSSTCEEEEE-SS-GGGTS
T ss_pred EeCCCCcchHHHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhCCCCcEEEecchhHHHHH
Confidence 34567889999999999999999999999999998887764 244555565555544433
No 203
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=30.82 E-value=1e+02 Score=23.46 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=34.8
Q ss_pred HHhh-CCCcEEEEEcCCHHHHH--HHHHcCCceeEecccccHHHHHHhhhhch
Q psy8471 175 GTRF-GRKVTYVVIGDGQDEEA--AAKQNNFPFWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 175 ~~RF-G~k~tyvvIGDG~eEe~--AAk~~~~PFwrIssh~Dl~~L~~AL~~~~ 224 (242)
+..| -..|..||||=|..|.. =++..+|||= |-..|+ .+||.||.+..
T Consensus 6 ~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~D~~-~~lY~~lg~~~ 56 (115)
T PF13911_consen 6 KPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYVDPE-RKLYKALGLKR 56 (115)
T ss_pred HHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEEeCc-HHHHHHhCCcc
Confidence 4455 36688888888755332 2345788987 888886 89999998886
No 204
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=30.55 E-value=4.8e+02 Score=24.84 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHhhCCcceEEE-EcCCcchHHHHHHHHhhcCCccccCccc
Q psy8471 89 LGPTKREQWLQLRAEI-------ESTTDNWLSLAIKCLNIINSRSTCTNVI-VTCTQLVPALAKVLLFGLGDIFQVENIY 160 (242)
Q Consensus 89 L~~~kr~~w~~lr~e~-------e~~Td~WLs~A~k~L~~i~sR~~~vNVL-VTttqLVPaLAK~LLygL~~~fpiENIY 160 (242)
+|...-+.|.+--+++ |.+-......+++.|+....+-.-..|. .+....+-+|+|.|+-.||--+-. |.
T Consensus 242 ~G~~~t~~~l~~la~~~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~--i~ 319 (415)
T cd01977 242 FGFEYCAESLRKIGAFFGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVA--MS 319 (415)
T ss_pred CCHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEE--EE
Confidence 5666666666322211 1222233334445454444444444444 456778899999887455543311 32
Q ss_pred cccccChhHHHHHHHHhhCC--------------------CcEEEEEcCCHHHHHHHHHcCCceeEec
Q psy8471 161 SSTKIGKESCFERIGTRFGR--------------------KVTYVVIGDGQDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 161 Sa~kiGKesCFerI~~RFG~--------------------k~tyvvIGDG~eEe~AAk~~~~PFwrIs 208 (242)
+.+ ++..=|+...++... +... +||... |...|+++++||.++.
T Consensus 320 ~~~--~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~~~~~~pdl-iig~s~-~~~~a~~lgip~~~~~ 383 (415)
T cd01977 320 SKF--GHQEDFEKVIARGGEGTIYIDDPNELEFFEILEMLKPDI-ILTGPR-VGELVKKLHVPYVNIH 383 (415)
T ss_pred EEe--ccHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCE-EEecCc-cchhhhhcCCCEEecc
Confidence 221 122224444443321 1222 344432 2357888999999883
No 205
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=30.43 E-value=1.6e+02 Score=29.07 Aligned_cols=67 Identities=19% Similarity=0.437 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCC-ceeEecccccHHHHHHhhhhchh--hhhhchhhhhhh
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNF-PFWRVSSHSDLAALYNALDMGFL--IVEEGLVGTLAE 237 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~-PFwrIssh~Dl~~L~~AL~~~~l--~~~~~~~~~~~~ 237 (242)
..|.++++++ ++++++++|+|.++++ .++.++. ..+..--+.|+..++.+.+. |+ ...||+--++.|
T Consensus 339 ~A~~~l~~~~-p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv-~v~pS~~Egfgl~~lE 411 (500)
T TIGR02918 339 KAVVKAKKSV-PELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYEL-YLSASTSEGFGLTLME 411 (500)
T ss_pred HHHHHHHhhC-CCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCE-EEEcCccccccHHHHH
Confidence 4555565554 7899999999987543 3455544 34555557788888887765 33 234554444443
No 206
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.02 E-value=1.4e+02 Score=25.92 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCc--eeEecccccHHHHHHhhhhc
Q psy8471 171 FERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFP--FWRVSSHSDLAALYNALDMG 223 (242)
Q Consensus 171 FerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~P--FwrIssh~Dl~~L~~AL~~~ 223 (242)
|+++.++ ++++++++|+|.+++. -+++.+.+ +--+...+++..++.+-+.-
T Consensus 219 ~~~l~~~--~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~ 274 (371)
T cd04962 219 FAKVRKE--VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLF 274 (371)
T ss_pred HHHHHhc--CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEE
Confidence 4444444 4689999999976554 34455553 22334567788777776553
No 207
>PTZ00175 diphthine synthase; Provisional
Probab=29.43 E-value=1.3e+02 Score=27.64 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHhh-CCCcEEEEEcCC------HHHHHHHHHcCCceeEec
Q psy8471 166 GKESCFERIGTRF-GRKVTYVVIGDG------QDEEAAAKQNNFPFWRVS 208 (242)
Q Consensus 166 GKesCFerI~~RF-G~k~tyvvIGDG------~eEe~AAk~~~~PFwrIs 208 (242)
-.++.-+.|.++. |++|.|++.||- .++...|+++++|+--|-
T Consensus 62 ~~e~~~~~ii~~a~~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIP 111 (270)
T PTZ00175 62 MVEEGCDEILEEAKEKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIH 111 (270)
T ss_pred CHHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEEC
Confidence 3455556677766 899999999994 788899999999988776
No 208
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=29.39 E-value=1.5e+02 Score=24.72 Aligned_cols=32 Identities=25% Similarity=0.112 Sum_probs=26.1
Q ss_pred CHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 190 GQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 190 G~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
..|=...|+.++++.++|....|+..+..|++
T Consensus 130 ~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~ 161 (178)
T cd02008 130 VIDIEALVRAIGVKRVVVVDPYDLKAIREELK 161 (178)
T ss_pred ccCHHHHHHHCCCCEEEecCccCHHHHHHHHH
Confidence 46778899999999999999999976655554
No 209
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=29.13 E-value=54 Score=34.37 Aligned_cols=40 Identities=33% Similarity=0.525 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCcEE---EEEcCCHHHHHHHHHcC----CceeEec
Q psy8471 169 SCFERIGTRFGRKVTY---VVIGDGQDEEAAAKQNN----FPFWRVS 208 (242)
Q Consensus 169 sCFerI~~RFG~k~ty---vvIGDG~eEe~AAk~~~----~PFwrIs 208 (242)
+..|.|++-|++|++. ||.|-+.-=|+|||..+ +||++=.
T Consensus 514 ~~le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR 560 (730)
T COG0376 514 AVLEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGR 560 (730)
T ss_pred HHHHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCC
Confidence 7899999999999774 89999999999999965 6888643
No 210
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=28.89 E-value=1.3e+02 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHH--------HHHHHHcCC----ceeEec--ccccHHHHHHhhhhc
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDE--------EAAAKQNNF----PFWRVS--SHSDLAALYNALDMG 223 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eE--------e~AAk~~~~----PFwrIs--sh~Dl~~L~~AL~~~ 223 (242)
...|+.+.++ .+++.++++|+|.++ ++..+..+. =|.-.. ++.++..++.+.+.-
T Consensus 209 l~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~ 277 (372)
T cd03792 209 IDAYRKVKER-VPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVV 277 (372)
T ss_pred HHHHHHHHhh-CCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEE
Confidence 4566676665 367999999999531 222222332 133222 456788888887763
No 211
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.76 E-value=1.2e+02 Score=27.99 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhh--CC-Cc-EEEEEcCCHHHHHHHHHcCCceeEeccc
Q psy8471 167 KESCFERIGTRF--GR-KV-TYVVIGDGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 167 KesCFerI~~RF--G~-k~-tyvvIGDG~eEe~AAk~~~~PFwrIssh 210 (242)
.-+||+-|..++ |. ++ .=+||+|..+=...|+++|+|+..++..
T Consensus 99 ~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~ 146 (286)
T PRK06027 99 EDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVT 146 (286)
T ss_pred CCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccC
Confidence 349999999887 32 22 4456678766666899999999987654
No 212
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.59 E-value=1.2e+02 Score=31.61 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHH---HHHHHcCCc--eeEecccccHHHHHHhhhhchh-hhhhchhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEE---AAAKQNNFP--FWRVSSHSDLAALYNALDMGFL-IVEEGLVGTL 235 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe---~AAk~~~~P--FwrIssh~Dl~~L~~AL~~~~l-~~~~~~~~~~ 235 (242)
-|..+.+++ ++++|++||||.+++ +-++++++. +.-....+|+..++.+.+.-.+ ...||+-.++
T Consensus 538 A~a~l~~~~-p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vl 608 (694)
T PRK15179 538 AAQRFAASH-PKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVL 608 (694)
T ss_pred HHHHHHHHC-cCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHH
Confidence 344444444 679999999997654 345666643 2223446789999988876433 1334443333
No 213
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=28.54 E-value=2.2e+02 Score=25.14 Aligned_cols=73 Identities=21% Similarity=0.371 Sum_probs=43.3
Q ss_pred eEEEEcCCcchHHHHHHHHhhcCCccccCccccccccC--------------------------hhHHHHHHHHhh-C-C
Q psy8471 129 TNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG--------------------------KESCFERIGTRF-G-R 180 (242)
Q Consensus 129 vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG--------------------------KesCFerI~~RF-G-~ 180 (242)
-.+++..++-.|++--+|. +-++||.|++-+-.+.| =...--.+..++ + .
T Consensus 50 d~~v~s~gH~~~~~ya~l~--~~g~~~~~~l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~ 127 (255)
T cd02012 50 DRFVLSKGHASPALYAVLA--LAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFD 127 (255)
T ss_pred CeEEEcCCcHHHHHHHHHH--HcCCCCHHHHHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCC
Confidence 3478888899998666554 44455544332111111 112333445554 3 5
Q ss_pred CcEEEEEcCCH-------HHHHHHHHcCCc
Q psy8471 181 KVTYVVIGDGQ-------DEEAAAKQNNFP 203 (242)
Q Consensus 181 k~tyvvIGDG~-------eEe~AAk~~~~P 203 (242)
+-+||++|||. ||-..|..++.|
T Consensus 128 ~~v~~i~GDG~~~~G~~~eal~~a~~~~l~ 157 (255)
T cd02012 128 YRVYVLLGDGELQEGSVWEAASFAGHYKLD 157 (255)
T ss_pred CEEEEEECcccccccHHHHHHHHHHHcCCC
Confidence 68999999983 455577777776
No 214
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=28.52 E-value=1.7e+02 Score=25.38 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCCcceEEEEcC--CcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcC
Q psy8471 112 LSLAIKCLNIINSRSTCTNVIVTC--TQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGD 189 (242)
Q Consensus 112 Ls~A~k~L~~i~sR~~~vNVLVTt--tqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGD 189 (242)
++.|.+++..+.++... -+++|+ +.-...+++-|.=.++--++.|.|++|... .-+.+++++..+..|+ +|.
T Consensus 16 ~~~a~e~i~~l~~~g~~-~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~----~~~~l~~~~~~~~v~v-~G~ 89 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKP-VVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSV----TKDLLRQRFEGEKVYV-IGV 89 (236)
T ss_pred CcCHHHHHHHHHHCCCe-EEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHH----HHHHHHHhCCCCEEEE-ECC
Confidence 45667777777655444 445553 345566777665435555788999998763 3455666663333444 454
Q ss_pred CHHHHHHHHHcCCc
Q psy8471 190 GQDEEAAAKQNNFP 203 (242)
Q Consensus 190 G~eEe~AAk~~~~P 203 (242)
. .-++..+.+++.
T Consensus 90 ~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 90 G-ELRESLEGLGFR 102 (236)
T ss_pred H-HHHHHHHHcCCc
Confidence 3 334455666653
No 215
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.44 E-value=2.2e+02 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 166 GKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 166 GKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
-|.. +.++.++.| +-..|+++-+..+-..+++++++|++
T Consensus 98 dK~~-~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~~P~i 137 (304)
T PRK01372 98 DKLR-TKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLV 137 (304)
T ss_pred CHHH-HHHHHHHCCCCCCCEEEEeCcchHHHHHhhcCCCEE
Confidence 4554 667788888 66788888887655678888999973
No 216
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.21 E-value=1.5e+02 Score=28.62 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhC-C---cceEEEEcCCcchHHHHHHHHhhcC----------------CccccCccccccccChhHHHH
Q psy8471 113 SLAIKCLNIINSR-S---TCTNVIVTCTQLVPALAKVLLFGLG----------------DIFQVENIYSSTKIGKESCFE 172 (242)
Q Consensus 113 s~A~k~L~~i~sR-~---~~vNVLVTttqLVPaLAK~LLygL~----------------~~fpiENIYSa~kiGKesCFe 172 (242)
....++++.++.. . ...+|-|+|..++|.+-++.=..+. .+.|+.|-|+-.++= .-++
T Consensus 177 d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll--~~l~ 254 (356)
T PRK14462 177 DNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESII--DAVR 254 (356)
T ss_pred HHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHH--HHHH
Confidence 3455666666654 2 1237899999999998884433331 123444444322221 2223
Q ss_pred HHHHhhCCC--cEEEEEcCCHHHHH
Q psy8471 173 RIGTRFGRK--VTYVVIGDGQDEEA 195 (242)
Q Consensus 173 rI~~RFG~k--~tyvvIGDG~eEe~ 195 (242)
....+-|++ .+|++|.+=-|.++
T Consensus 255 ~y~~~~~~~i~ieyvLI~GvNDs~e 279 (356)
T PRK14462 255 KFPIDQRKRVMFEYLVIKDVNDDLK 279 (356)
T ss_pred HHHHHhCCeEEEEEEEECCCCCCHH
Confidence 334455888 67899954444333
No 217
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=28.21 E-value=97 Score=30.57 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=52.3
Q ss_pred ceEEEEcCC-cchHHHHHHHHhh---cCCcccc------CccccccccChhHHHHHHHHhhCCCcEEEEEcCCHH---HH
Q psy8471 128 CTNVIVTCT-QLVPALAKVLLFG---LGDIFQV------ENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQD---EE 194 (242)
Q Consensus 128 ~vNVLVTtt-qLVPaLAK~LLyg---L~~~fpi------ENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~e---Ee 194 (242)
-+-.|=+|. |+-|.|-|.+=+. .|++|=- .||--+.-.-|-+-..-|..|| ++..||.|||..| |-
T Consensus 215 pvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~-p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 215 PVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRY-PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred CeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhC-CCceEEEecCCCCcCHHH
Confidence 444443332 8999999998776 3444432 6777777777889988899999 6678999999854 22
Q ss_pred HHHHHcCCc
Q psy8471 195 AAAKQNNFP 203 (242)
Q Consensus 195 ~AAk~~~~P 203 (242)
=|+-...||
T Consensus 294 Yae~v~~fP 302 (373)
T COG4850 294 YAEMVRCFP 302 (373)
T ss_pred HHHHHHhCc
Confidence 355555566
No 218
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=28.03 E-value=2.6e+02 Score=24.17 Aligned_cols=75 Identities=23% Similarity=0.083 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCcceEEEEcCCcchHHH-HHHHHhhcCCcc-ccCccccccccChhHHHHHHHHhhCC-CcEEEEEcCC
Q psy8471 114 LAIKCLNIINSRSTCTNVIVTCTQLVPAL-AKVLLFGLGDIF-QVENIYSSTKIGKESCFERIGTRFGR-KVTYVVIGDG 190 (242)
Q Consensus 114 ~A~k~L~~i~sR~~~vNVLVTttqLVPaL-AK~LLygL~~~f-piENIYSa~kiGKesCFerI~~RFG~-k~tyvvIGDG 190 (242)
-|..+|+.+.++ +.-=++||+..=-++- ++ .|=.+|--. ..+.|+++..+-. ..+.++.+++|. .-.-++|||+
T Consensus 28 ga~e~L~~L~~~-G~~~~ivTN~~~~~~~~~~-~L~~~gl~~~~~~~Ii~s~~~~~-~~l~~~~~~~~~~~~~~~~vGd~ 104 (242)
T TIGR01459 28 GAVQNLNKIIAQ-GKPVYFVSNSPRNIFSLHK-TLKSLGINADLPEMIISSGEIAV-QMILESKKRFDIRNGIIYLLGHL 104 (242)
T ss_pred cHHHHHHHHHHC-CCEEEEEeCCCCChHHHHH-HHHHCCCCccccceEEccHHHHH-HHHHhhhhhccCCCceEEEeCCc
Confidence 344666666554 2333466665543332 22 234444334 4578888876554 467777777762 3445667775
Q ss_pred H
Q psy8471 191 Q 191 (242)
Q Consensus 191 ~ 191 (242)
.
T Consensus 105 ~ 105 (242)
T TIGR01459 105 E 105 (242)
T ss_pred c
Confidence 3
No 219
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=28.00 E-value=1.7e+02 Score=22.81 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCHHHH---HHHHHcCCc--eeEeccc--ccHHHHHHhhhhch
Q psy8471 169 SCFERIGTRFGRKVTYVVIGDGQDEE---AAAKQNNFP--FWRVSSH--SDLAALYNALDMGF 224 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvvIGDG~eEe---~AAk~~~~P--FwrIssh--~Dl~~L~~AL~~~~ 224 (242)
..|+++.++..+++.++++|++..+. ..++.++.+ +--+... .++.+++..-+.-.
T Consensus 35 ~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v 97 (172)
T PF00534_consen 35 EAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFV 97 (172)
T ss_dssp HHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccceecc
Confidence 46777777777999999999765433 355556653 2223333 37888887755443
No 220
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=28.00 E-value=86 Score=26.05 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=47.3
Q ss_pred EEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhC-CCcEEE-EEcCCHHHHHHHHHcCCceeEe
Q psy8471 130 NVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFG-RKVTYV-VIGDGQDEEAAAKQNNFPFWRV 207 (242)
Q Consensus 130 NVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG-~k~tyv-vIGDG~eEe~AAk~~~~PFwrI 207 (242)
-|+..++.+++++- -|-++.....=|..|.++|++.|- .+..|+ ++|++..--+|=++.++|--||
T Consensus 78 ~li~~~g~~~~~~~------------~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i 145 (157)
T smart00775 78 PVLLSPDRLFAALH------------REVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRI 145 (157)
T ss_pred eEEEcCCcchhhhh------------cccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhE
Confidence 55667777776432 244455444459999999999995 455665 5899888888889999997665
No 221
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=27.68 E-value=1.2e+02 Score=30.27 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCcEEEE-------EcCCHHHH--HHHHHcCCceeEecc
Q psy8471 169 SCFERIGTRFGRKVTYVV-------IGDGQDEE--AAAKQNNFPFWRVSS 209 (242)
Q Consensus 169 sCFerI~~RFG~k~tyvv-------IGDG~eEe--~AAk~~~~PFwrIss 209 (242)
.+..+|++||-+|+-||+ |||-.|-- ++.+++++|.+.+++
T Consensus 87 ~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~ 136 (457)
T CHL00073 87 RLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARA 136 (457)
T ss_pred HHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeC
Confidence 456778899999988885 88876543 345577999999988
No 222
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=27.60 E-value=86 Score=26.45 Aligned_cols=64 Identities=20% Similarity=0.421 Sum_probs=38.4
Q ss_pred cccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCHH----------H-HHHHHHcCCceeEecccc--cHHHHHHhh
Q psy8471 154 FQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQD----------E-EAAAKQNNFPFWRVSSHS--DLAALYNAL 220 (242)
Q Consensus 154 fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~e----------E-e~AAk~~~~PFwrIssh~--Dl~~L~~AL 220 (242)
|.+.|-.|-..+ + .-++.|.++ .+++.+++||--.| | ++-|+.+++||..+|+.. .+..+..-+
T Consensus 86 fD~t~~~Sf~~~-~-~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 86 YDITNRWSFDGI-D-RWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EECcCHHHHHHH-H-HHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 344444444444 1 345556444 47899999993322 2 235788999999999743 355544444
No 223
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=27.33 E-value=89 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred hCCCcEEEEEcCCHHHHHHHHHcCCce
Q psy8471 178 FGRKVTYVVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 178 FG~k~tyvvIGDG~eEe~AAk~~~~PF 204 (242)
+|++.+=+|++++.++.+.||+.+-.+
T Consensus 49 ~~k~~kV~Vf~~~~~~~~~Ak~aGa~~ 75 (141)
T TIGR01170 49 FGKEPKIAVFTKGASEVEEAREAGADY 75 (141)
T ss_pred CCCCCEEEEECCChHHHHHHHHcCCCE
Confidence 467888999999977667788876553
No 224
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.23 E-value=2.2e+02 Score=28.24 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=41.6
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCc-----------------EEEEEcCCHHH
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKV-----------------TYVVIGDGQDE 193 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~-----------------tyvvIGDG~eE 193 (242)
.++.-....-+++|.|.-.||--+..=-.|+... ++. ++...+.++.++ -=++||+. -|
T Consensus 297 ~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~--~~~-~~~~~~~~~~~~~i~~D~~el~~~i~~~~PdliiG~~-~e 372 (519)
T PRK02910 297 FVFGDATHAVAAARILSDELGFEVVGAGTYLRED--ARW-VRAAAKEYGDEALITDDYLEVEDAIAEAAPELVLGTQ-ME 372 (519)
T ss_pred EEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcch--hHH-HHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEEEcc-hH
Confidence 4455567889999999855553332111122211 111 222233333221 22455666 66
Q ss_pred HHHHHHcCCceeEecc
Q psy8471 194 EAAAKQNNFPFWRVSS 209 (242)
Q Consensus 194 e~AAk~~~~PFwrIss 209 (242)
...|+++++|+.+|+.
T Consensus 373 r~~a~~lgiP~~~i~~ 388 (519)
T PRK02910 373 RHSAKRLGIPCAVISA 388 (519)
T ss_pred HHHHHHcCCCEEEecc
Confidence 7789999999999976
No 225
>PRK14098 glycogen synthase; Provisional
Probab=27.07 E-value=1.1e+02 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCHHH--H---HHHHHc--CCceeEecccccHHHHHHhhhhch
Q psy8471 180 RKVTYVVIGDGQDE--E---AAAKQN--NFPFWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 180 ~k~tyvvIGDG~eE--e---~AAk~~--~~PFwrIssh~Dl~~L~~AL~~~~ 224 (242)
+++.+|+||+|.++ + +-++++ ++-|.---++..+..++.+.|+-.
T Consensus 335 ~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l 386 (489)
T PRK14098 335 LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLL 386 (489)
T ss_pred cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEE
Confidence 46899999999643 1 123333 233443334555677787776543
No 226
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=26.86 E-value=74 Score=29.68 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=37.6
Q ss_pred hHHHHHHHHhh-----CCCcEEEEEcCCHHHHH---HHHHcCCceeEe----cccccHHHHHHhhhhch
Q psy8471 168 ESCFERIGTRF-----GRKVTYVVIGDGQDEEA---AAKQNNFPFWRV----SSHSDLAALYNALDMGF 224 (242)
Q Consensus 168 esCFerI~~RF-----G~k~tyvvIGDG~eEe~---AAk~~~~PFwrI----ssh~Dl~~L~~AL~~~~ 224 (242)
...|+.+++.. .+++.+++||||.++++ -++++++.-+.+ -.+.|+..++.+.+...
T Consensus 251 i~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v 319 (415)
T cd03816 251 LDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGV 319 (415)
T ss_pred HHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEE
Confidence 34555555432 25799999999976543 556777653222 24678999999988764
No 227
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=26.85 E-value=2.4e+02 Score=22.14 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCC
Q psy8471 113 SLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRK 181 (242)
Q Consensus 113 s~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k 181 (242)
..+.++++.+.++.+ +-|++-|.++...+-..+---+-.+++|-...++...|++++.++|+.-.|-+
T Consensus 30 ee~~~~l~~l~~~~d-~gII~ite~~~~~i~~~i~~~~P~Ii~IP~~~g~~~~~~~~i~~~v~raiG~d 97 (100)
T PRK03957 30 EEAKNAIKELVENDE-IGIIIITERIAEEIRDLISVALPIIVEIPDKSGSIERENDPVKELVRRAIGVE 97 (100)
T ss_pred HHHHHHHHHHhhCCC-eEEEEEcHHHHHHHHHHHhcCCCEEEEECCCCCCCccchHHHHHHHHHHhCcc
Confidence 345666666666665 45555556677766554443333445667777888899999999999888854
No 228
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=26.67 E-value=1.1e+02 Score=26.51 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred cchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhh
Q psy8471 137 QLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRF 178 (242)
Q Consensus 137 qLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RF 178 (242)
+|+...++++-.--=.+|=+|||..-....+...|+.|++.|
T Consensus 89 ~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l 130 (335)
T PF00145_consen 89 SLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEEL 130 (335)
T ss_dssp SHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccceEEEecccceeeccccccccccccccc
Confidence 899999999988888899999999999888889999999887
No 229
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=26.67 E-value=62 Score=27.66 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecccc---cHHHHHHhhhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHS---DLAALYNALDM 222 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~---Dl~~L~~AL~~ 222 (242)
.++.+.++.++++.++++|++.++... ..+-.+.-+...+ ++..++.+.+.
T Consensus 214 a~~~l~~~~~~~~~~~i~G~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~ad~ 267 (365)
T cd03825 214 ALKRLAERWKDDIELVVFGASDPEIPP--DLPFPVHYLGSLNDDESLALIYSAADV 267 (365)
T ss_pred HHHHhhhccCCCeEEEEeCCCchhhhc--cCCCceEecCCcCCHHHHHHHHHhCCE
Confidence 344444444689999999999776653 2222233333333 45566665554
No 230
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=2.7e+02 Score=20.64 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHHhhCCCcEEEEEcCCH--HHHHHHHH----cCCceeEecc-----cccHHHHHHhhh
Q psy8471 172 ERIGTRFGRKVTYVVIGDGQ--DEEAAAKQ----NNFPFWRVSS-----HSDLAALYNALD 221 (242)
Q Consensus 172 erI~~RFG~k~tyvvIGDG~--eEe~AAk~----~~~PFwrIss-----h~Dl~~L~~AL~ 221 (242)
++..+|.|....++.|.+.. +.++.+++ ..+|...|.- ..|+.+|+....
T Consensus 18 k~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~ 78 (80)
T COG0695 18 KRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGK 78 (80)
T ss_pred HHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhcc
Confidence 45667889999998888887 33344444 4689998876 247888876544
No 231
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=26.26 E-value=1.3e+02 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=30.5
Q ss_pred HHHHHhh--CCCcEEEEEcCC------HHHHHHHHHcCCceeEecccccHHHHHHh
Q psy8471 172 ERIGTRF--GRKVTYVVIGDG------QDEEAAAKQNNFPFWRVSSHSDLAALYNA 219 (242)
Q Consensus 172 erI~~RF--G~k~tyvvIGDG------~eEe~AAk~~~~PFwrIssh~Dl~~L~~A 219 (242)
+.++++. |++|.+++.||- .++.++.++.++| +.+...|..-++-.|
T Consensus 63 ~~~i~~~~~g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~-~~veviPGiSs~~aa 117 (246)
T PRK05765 63 NTAIEKALEGNIVALVSSGDPQVYGMAGLVFELISRRKLD-VDVEVIPGVTAALAA 117 (246)
T ss_pred HHHHHHHHCCCcEEEEeCCCchhhhhHHHHHHHHHhcCCC-CCEEEeCCHHHHHHH
Confidence 4566654 899999999995 3555666777765 455555555444443
No 232
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=26.01 E-value=1.2e+02 Score=24.92 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=46.7
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhcccCCCCCC---------C-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8471 55 SGVRGGVDWMRKLAFRYRKIKDTYNNYRNSVGGLL---------G-PTKREQWLQLRAEIESTTDNWLSLAIKCLNII 122 (242)
Q Consensus 55 ~~vrggvdwmRKLAfRyrrIke~Y~~yk~~v~gLL---------~-~~kr~~w~~lr~e~e~~Td~WLs~A~k~L~~i 122 (242)
..+..|++++..++--++.=.+|=+.|..++..|- | ..-...|..++.+++...+.-...|.+...+|
T Consensus 7 ~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i 84 (191)
T cd07610 7 KRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQLI 84 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888777665555555543333211 1 13477899999999999999888887665555
No 233
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=26.00 E-value=1.9e+02 Score=28.68 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=44.1
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccC------hhHH--------HHHHHHhhCCCcEEEEEcCCHHHHHH
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIG------KESC--------FERIGTRFGRKVTYVVIGDGQDEEAA 196 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiG------KesC--------FerI~~RFG~k~tyvvIGDG~eEe~A 196 (242)
+++.....+-+++|.|.=.||--+-.-..|+....- |+.| ++.|.++--+.--=++||+. -|...
T Consensus 299 ~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~dD~~ei~~~i~~~~pdliiG~~-~er~~ 377 (511)
T TIGR01278 299 FVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLITDDFQEVADAIAALEPELVLGTQ-MERHS 377 (511)
T ss_pred EEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEEeCCHHHHHHHHHhcCCCEEEECh-HHHHH
Confidence 556667799999999985555433222223220000 0000 22333332111233677777 67778
Q ss_pred HHHcCCceeEecc
Q psy8471 197 AKQNNFPFWRVSS 209 (242)
Q Consensus 197 Ak~~~~PFwrIss 209 (242)
|++++.||.+|+.
T Consensus 378 a~~lgip~~~i~~ 390 (511)
T TIGR01278 378 AKRLDIPCGVISA 390 (511)
T ss_pred HHHcCCCEEEecC
Confidence 9999999999986
No 234
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=25.82 E-value=1.5e+02 Score=23.09 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=34.0
Q ss_pred HHHHHHHHhh-CCCcEEEEEcCCHHH-----------HHHHHHcCCceeEecccc--cHHHHHHhh
Q psy8471 169 SCFERIGTRF-GRKVTYVVIGDGQDE-----------EAAAKQNNFPFWRVSSHS--DLAALYNAL 220 (242)
Q Consensus 169 sCFerI~~RF-G~k~tyvvIGDG~eE-----------e~AAk~~~~PFwrIssh~--Dl~~L~~AL 220 (242)
...++|.... .++.-.++||--.|. ++.++++++||..+|+.. .+..+..++
T Consensus 93 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 93 DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 3556666554 467788888843331 346788999999999843 466655554
No 235
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.72 E-value=1.8e+02 Score=27.18 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=48.8
Q ss_pred HHHHHHHHhh-C-CcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCC---cE-EEEEc
Q psy8471 115 AIKCLNIINS-R-STCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRK---VT-YVVIG 188 (242)
Q Consensus 115 A~k~L~~i~s-R-~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k---~t-yvvIG 188 (242)
.......|.. . ++++=++||+ =|-.++-++ +...+-||-++||+.|+..-+.--..|.+++|-. ++ |+|+|
T Consensus 107 ~~~i~~~i~~~~~~~~iiivvsN--PvD~~t~~~-~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~G 183 (322)
T cd01338 107 FTAQGKALNDVASRDVKVLVVGN--PCNTNALIA-MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWG 183 (322)
T ss_pred HHHHHHHHHhhCCCCeEEEEecC--cHHHHHHHH-HHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEe
Confidence 3444445533 3 3777555654 344444333 3455578999999999888777777788888743 67 57789
Q ss_pred CCHH
Q psy8471 189 DGQD 192 (242)
Q Consensus 189 DG~e 192 (242)
-..|
T Consensus 184 eHG~ 187 (322)
T cd01338 184 NHSP 187 (322)
T ss_pred CCcc
Confidence 8754
No 236
>PF15152 Kisspeptin: Kisspeptin
Probab=25.61 E-value=31 Score=27.18 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCC
Q psy8471 16 GQDLGGYNFGADGF 29 (242)
Q Consensus 16 GqDLs~y~f~~dgf 29 (242)
=||||+||++.=|+
T Consensus 62 ekdls~YNwNSFGL 75 (78)
T PF15152_consen 62 EKDLSAYNWNSFGL 75 (78)
T ss_pred eccccccccccccc
Confidence 37999999998765
No 237
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=25.25 E-value=42 Score=34.72 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccchhhhHHHHHHHHHHHHHHHhhcccCCCCCCChh------
Q psy8471 19 LGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGGVDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPT------ 92 (242)
Q Consensus 19 Ls~y~f~~dgf~~~~~~~~~~~~~~~~~~~~~lc~~~~vrggvdwmRKLAfRyrrIke~Y~~yk~~v~gLL~~~------ 92 (242)
+|...|.++||-...++ |..||-++|--| .++.. -|.+-|.|.
T Consensus 500 FsglkFkqng~L~~iPs-------------------------~t~m~~m~~~~R--e~fL~----vvR~ALEP~astP~~ 548 (670)
T PRK15376 500 FSGLKFKQNSFLSTVPS-------------------------VTNMHSMHFDAR--ETFLG----VIRKALEPDTSTPFP 548 (670)
T ss_pred CCcceeccCCceeecch-------------------------hhhhhhcccchH--HHHHH----HHHhhcCcccCCcch
Confidence 67777888888765552 334999998766 22222 334444443
Q ss_pred hHHHHHHHHHHH
Q psy8471 93 KREQWLQLRAEI 104 (242)
Q Consensus 93 kr~~w~~lr~e~ 104 (242)
.|.++..||+||
T Consensus 549 ~RRaFd~LRaeI 560 (670)
T PRK15376 549 VRRAFDGLRAEI 560 (670)
T ss_pred HHHHHHHHHhhc
Confidence 788899999886
No 238
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.23 E-value=6.2e+02 Score=24.34 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=43.9
Q ss_pred EEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHH---HHhhCCCcE------------------E-EEEc
Q psy8471 131 VIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERI---GTRFGRKVT------------------Y-VVIG 188 (242)
Q Consensus 131 VLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI---~~RFG~k~t------------------y-vvIG 188 (242)
+++.....+-+++|.|. .|| +-| +--++..+.+..-+++ ..+++.++. . ++||
T Consensus 304 ~v~g~~~~~~~l~~~L~-elG-~~~---~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~~~dliiG 378 (429)
T cd03466 304 AIYGEPDFVVAITRFVL-ENG-MVP---VLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKIDVLIG 378 (429)
T ss_pred EEEcCHHHHHHHHHHHH-HCC-CEE---EEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCEEEE
Confidence 34456678889999996 786 333 2222333333333333 233333321 1 5677
Q ss_pred CCHHHHHHHHHcCCceeEeccc
Q psy8471 189 DGQDEEAAAKQNNFPFWRVSSH 210 (242)
Q Consensus 189 DG~eEe~AAk~~~~PFwrIssh 210 (242)
+.. |...|++++.||.+++..
T Consensus 379 ~s~-~~~~a~~~~ip~~~~~~P 399 (429)
T cd03466 379 NSY-GRRIAEKLGIPLIRIGFP 399 (429)
T ss_pred Cch-hHHHHHHcCCCEEEecCC
Confidence 775 567888899999999754
No 239
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=25.17 E-value=1e+02 Score=23.77 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=33.2
Q ss_pred cccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHH
Q psy8471 159 IYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAA 197 (242)
Q Consensus 159 IYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AA 197 (242)
+++..-+||-+.-+.+.+.++.++..+.+....++++--
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce
Confidence 467888999999999999999999999999988888744
No 240
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=24.95 E-value=1.4e+02 Score=24.85 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=31.4
Q ss_pred CcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 181 k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
++.+++||.. ..++++++++.-..+...++...|..++.
T Consensus 207 ~~~~~aiG~~--Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~ 245 (249)
T PRK05928 207 SCKAVVIGER--TAEALRELGIKVIIVPDSADNEALLRALK 245 (249)
T ss_pred CCeEEEeCHH--HHHHHHHcCCCcceecCCCChHHHHHHHH
Confidence 7889999754 77788999987777788888888887773
No 241
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=24.85 E-value=1.2e+02 Score=23.98 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCH-----HHHHHHHHcCCceeEeccccc
Q psy8471 180 RKVTYVVIGDGQ-----DEEAAAKQNNFPFWRVSSHSD 212 (242)
Q Consensus 180 ~k~tyvvIGDG~-----eEe~AAk~~~~PFwrIssh~D 212 (242)
.+.+++++|||. +|-..|.+++.|+.-|=.++.
T Consensus 64 ~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~ 101 (168)
T cd00568 64 DRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNG 101 (168)
T ss_pred CCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECC
Confidence 467899999985 666788888888877655444
No 242
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.70 E-value=6.2e+02 Score=24.13 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHhh-cccCCCCCCChhhHHHHHHHHHHH---hh--hhhhHHHHHHHHHHHHhhCCcceE-EEEc
Q psy8471 62 DWMRKLAFRYRKIKDTYNN-YRNSVGGLLGPTKREQWLQLRAEI---ES--TTDNWLSLAIKCLNIINSRSTCTN-VIVT 134 (242)
Q Consensus 62 dwmRKLAfRyrrIke~Y~~-yk~~v~gLL~~~kr~~w~~lr~e~---e~--~Td~WLs~A~k~L~~i~sR~~~vN-VLVT 134 (242)
++++++|. .++|.|.. |- .+...+|...-+.|++.-+++ +. .-..+-..+...+......-.-.. .+++
T Consensus 231 ~~~~~~a~---~L~e~~GiP~~-~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~ 306 (428)
T cd01965 231 YSGRKAAK---ALEEKFGVPYI-LFPTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAG 306 (428)
T ss_pred hhhHHHHH---HHHHHHCCCee-ecCCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45555553 34555644 22 223366777777777655443 11 111222222222222232333333 3445
Q ss_pred CCcchHHHHHHHHhhcCCccccCccccccccChh--H------------------HHHHHHHhhCCCcEEEEEcCCHHHH
Q psy8471 135 CTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKE--S------------------CFERIGTRFGRKVTYVVIGDGQDEE 194 (242)
Q Consensus 135 ttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKe--s------------------CFerI~~RFG~k~tyvvIGDG~eEe 194 (242)
...++-++++.|. .+|..++ -+++.+...+. . =++.|.++.-+.--=++||+.. |.
T Consensus 307 ~~~~~~~l~~~L~-e~G~~v~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~~-~~ 382 (428)
T cd01965 307 DPDLLLGLSRFLL-EMGAEPV--AAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNSH-GR 382 (428)
T ss_pred ChHHHHHHHHHHH-HcCCcce--EEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECch-hH
Confidence 5566777888887 7766543 34443332210 0 0123333332222235677774 46
Q ss_pred HHHHHcCCceeEecc
Q psy8471 195 AAAKQNNFPFWRVSS 209 (242)
Q Consensus 195 ~AAk~~~~PFwrIss 209 (242)
..|++++.||.+++.
T Consensus 383 ~~a~~~~ip~i~~~~ 397 (428)
T cd01965 383 YLARDLGIPLVRVGF 397 (428)
T ss_pred HHHHhcCCCEEEecC
Confidence 778889999998876
No 243
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=24.69 E-value=24 Score=24.83 Aligned_cols=15 Identities=47% Similarity=0.950 Sum_probs=11.6
Q ss_pred HHHHHHHhhcCCccc
Q psy8471 141 ALAKVLLFGLGDIFQ 155 (242)
Q Consensus 141 aLAK~LLygL~~~fp 155 (242)
++.-=|+||||++|.
T Consensus 17 a~ilglIyGlGevfN 31 (41)
T PF10766_consen 17 ALILGLIYGLGEVFN 31 (41)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455567899999994
No 244
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=24.59 E-value=1.5e+02 Score=25.48 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=44.9
Q ss_pred ccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 164 KIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 164 kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
.+.|.+-.+++.+++| ..-.-++|||+.---+--+..+.+|--=+.++++.+.
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~ 247 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEV 247 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHHHHh
Confidence 4679999999999999 4467799999988888888889998887778877664
No 245
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=24.11 E-value=2.5e+02 Score=24.77 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHHHH---HHHHcCCce-eEe-cccccHHHHHHhhhhch
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDEEA---AAKQNNFPF-WRV-SSHSDLAALYNALDMGF 224 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eEe~---AAk~~~~PF-wrI-ssh~Dl~~L~~AL~~~~ 224 (242)
.|+++.++ +++++++++|+|.++.. ..++++.+- +.+ ...+|+.+++...+.-.
T Consensus 225 a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 225 AFAKVVKQ-VPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred HHHHHHHh-CCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 34444444 48899999999977643 334555542 222 24678888888765533
No 246
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=24.09 E-value=1.8e+02 Score=28.31 Aligned_cols=59 Identities=29% Similarity=0.469 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhC---CCcEEEEE-----cCCHHHHH---HHHH-----------cCC-ceeEec---ccccHHHHHHhh
Q psy8471 167 KESCFERIGTRFG---RKVTYVVI-----GDGQDEEA---AAKQ-----------NNF-PFWRVS---SHSDLAALYNAL 220 (242)
Q Consensus 167 KesCFerI~~RFG---~k~tyvvI-----GDG~eEe~---AAk~-----------~~~-PFwrIs---sh~Dl~~L~~AL 220 (242)
|...|+++.+++- .|++++.| ||+.+..+ -+++ .+| |+..+. ++.++.++|.+.
T Consensus 277 ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aa 356 (456)
T TIGR02400 277 RLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAA 356 (456)
T ss_pred HHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 7899999988872 47899988 56655422 1111 233 655544 478999999999
Q ss_pred hhchh
Q psy8471 221 DMGFL 225 (242)
Q Consensus 221 ~~~~l 225 (242)
|.--+
T Consensus 357 Dv~vv 361 (456)
T TIGR02400 357 DVGLV 361 (456)
T ss_pred cEEEE
Confidence 87554
No 247
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=24.05 E-value=94 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.6
Q ss_pred hCCCcEEEEEcCCHHHHHHHHHcCCcee
Q psy8471 178 FGRKVTYVVIGDGQDEEAAAKQNNFPFW 205 (242)
Q Consensus 178 FG~k~tyvvIGDG~eEe~AAk~~~~PFw 205 (242)
+|++++=||++|| |.++.||..+-+++
T Consensus 68 ~gk~~kV~Vfa~~-~~~~eAk~aGad~v 94 (229)
T CHL00129 68 TGKTIRIAVLTNE-EKITEAKNAGADIV 94 (229)
T ss_pred CCCCcEEEEECCh-HhHHHHHHcCCCEe
Confidence 5788999999999 45666899888764
No 248
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=23.98 E-value=1.2e+02 Score=29.60 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=34.1
Q ss_pred cccccC----hhHHHHHHHHhhC----CCcEEEEEcCCHH-HHHHHHHcCCceeEec
Q psy8471 161 SSTKIG----KESCFERIGTRFG----RKVTYVVIGDGQD-EEAAAKQNNFPFWRVS 208 (242)
Q Consensus 161 Sa~kiG----KesCFerI~~RFG----~k~tyvvIGDG~e-Ee~AAk~~~~PFwrIs 208 (242)
-++|-| -.++|++++++++ ...++|+|+|-.. =++.|++.++|.+.|-
T Consensus 117 viSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~~s~L~~~a~~~g~~~f~ip 173 (410)
T PRK03868 117 VISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDPDSKLEQFAKENNIKCFNIP 173 (410)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecCCchHHHhHHhcCCcEEecC
Confidence 455656 3578999999873 1348999997544 3557899998887653
No 249
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=23.50 E-value=1.8e+02 Score=27.31 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhC----CCcEEEEEcCCHHH---------HHHHHHcCCc----eeEecccccHHHHHHhhhhc
Q psy8471 168 ESCFERIGTRFG----RKVTYVVIGDGQDE---------EAAAKQNNFP----FWRVSSHSDLAALYNALDMG 223 (242)
Q Consensus 168 esCFerI~~RFG----~k~tyvvIGDG~eE---------e~AAk~~~~P----FwrIssh~Dl~~L~~AL~~~ 223 (242)
...|..+++++. +++++++||+|.++ ++-++++++. |..--++.++.+++...+..
T Consensus 256 i~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~ 328 (419)
T cd03806 256 LRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIG 328 (419)
T ss_pred HHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEE
Confidence 466788887774 37999999998531 1246677774 43323467888888776653
No 250
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=23.43 E-value=4.7e+02 Score=24.41 Aligned_cols=81 Identities=23% Similarity=0.244 Sum_probs=50.6
Q ss_pred ceEEEEcCCcchHH----HHHHHHhhcCCccccCc-ccc--ccc----cCh-hHHHHHHHHhhCCCcEEEEEcCCHH---
Q psy8471 128 CTNVIVTCTQLVPA----LAKVLLFGLGDIFQVEN-IYS--STK----IGK-ESCFERIGTRFGRKVTYVVIGDGQD--- 192 (242)
Q Consensus 128 ~vNVLVTttqLVPa----LAK~LLygL~~~fpiEN-IYS--a~k----iGK-esCFerI~~RFG~k~tyvvIGDG~e--- 192 (242)
.+-+++|-.|+-+. +......+++....++- +-+ ..- +|+ ..-|+++.+++.|++ -+|-||+-+
T Consensus 30 ~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~-vlv~GD~~~~la 108 (365)
T TIGR03568 30 ELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLKPDL-VVVLGDRFEMLA 108 (365)
T ss_pred cEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCE-EEEeCCchHHHH
Confidence 45667777788774 56666666643222211 111 111 121 367889999998875 456788854
Q ss_pred HHHHHHHcCCceeEecc
Q psy8471 193 EEAAAKQNNFPFWRVSS 209 (242)
Q Consensus 193 Ee~AAk~~~~PFwrIss 209 (242)
-..||..+++|+..|..
T Consensus 109 ~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 109 AAIAAALLNIPIAHIHG 125 (365)
T ss_pred HHHHHHHhCCcEEEEEC
Confidence 35588999999998765
No 251
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=23.36 E-value=64 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHHHHHhhC--------CCcEEEEEcCCHH---HHHHHHHcCCceeEecccccHHHH
Q psy8471 170 CFERIGTRFG--------RKVTYVVIGDGQD---EEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 170 CFerI~~RFG--------~k~tyvvIGDG~e---Ee~AAk~~~~PFwrIssh~Dl~~L 216 (242)
=.+++.++.| +|.+|+|+||..- -..-|+++++|.+ +..++..|
T Consensus 250 e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii---~e~~f~~l 304 (313)
T PRK06063 250 ELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVL---DEAAFLEL 304 (313)
T ss_pred HHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccc---cHHHHHHH
Confidence 3445555554 6788999997432 4557778888843 34444443
No 252
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=23.27 E-value=2.5e+02 Score=27.07 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=52.9
Q ss_pred EEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCHHH---------HHHHHHc
Q psy8471 130 NVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDE---------EAAAKQN 200 (242)
Q Consensus 130 NVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eE---------e~AAk~~ 200 (242)
.++|||+- .-++..-|.|.|+..- -..+.|....-|.+|.||...|-.|- ++.||.+
T Consensus 20 ~~~v~tgi-----------~psG~~HIG~~~e~i~---~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~ 85 (353)
T cd00674 20 KYVVASGI-----------SPSGHIHIGNFREVIT---ADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYI 85 (353)
T ss_pred eEEEecCC-----------CCCCCcccCccHHHHH---HHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhc
Confidence 48888872 2467788888886332 25666666666999999999998852 3389999
Q ss_pred CCceeEe----cccccHHHHHHhh
Q psy8471 201 NFPFWRV----SSHSDLAALYNAL 220 (242)
Q Consensus 201 ~~PFwrI----ssh~Dl~~L~~AL 220 (242)
|+|.=.| ..|++...-+++.
T Consensus 86 G~pi~~ip~p~g~~~~~~d~~~~~ 109 (353)
T cd00674 86 GMPLSSVPDPFGCCESYAEHFERP 109 (353)
T ss_pred CccchhchhhcCCCHHHHHHHHHH
Confidence 9997776 3355544444443
No 253
>PRK08114 cystathionine beta-lyase; Provisional
Probab=23.07 E-value=6.8e+02 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=18.8
Q ss_pred CccccccccChhHHHHHHHHhhCCCcEEEEEcC
Q psy8471 157 ENIYSSTKIGKESCFERIGTRFGRKVTYVVIGD 189 (242)
Q Consensus 157 ENIYSa~kiGKesCFerI~~RFG~k~tyvvIGD 189 (242)
.++|..|. ..|+++.+|||-+++|+-..|
T Consensus 108 ~~~Yg~t~----~l~~~~l~~~Gi~v~~vd~~d 136 (395)
T PRK08114 108 GTAYEPTQ----DFCSKILSKLGVTTTWFDPLI 136 (395)
T ss_pred CCCcHHHH----HHHHHHHHhcCcEEEEECCCC
Confidence 45665553 445677788888888876544
No 254
>PRK05993 short chain dehydrogenase; Provisional
Probab=22.98 E-value=4.7e+02 Score=22.53 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=47.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhCCcceEEEEcCCcchHHHHHHHHhhcCCccccCccccccccChhHHHHHHHHhh
Q psy8471 99 QLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRF 178 (242)
Q Consensus 99 ~lr~e~e~~Td~WLs~A~k~L~~i~sR~~~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa~kiGKesCFerI~~RF 178 (242)
+++..++.-..+.+..++.++..+..+... .|+.+|+. .+.. -.|-...|+++|.+=++..+-+...+
T Consensus 99 ~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~----------~~~~-~~~~~~~Y~asK~a~~~~~~~l~~el 166 (277)
T PRK05993 99 ALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSI----------LGLV-PMKYRGAYNASKFAIEGLSLTLRMEL 166 (277)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECCh----------hhcC-CCCccchHHHHHHHHHHHHHHHHHHh
Confidence 334444554555556667777766544322 34444431 1111 13446789999999999888887766
Q ss_pred -CCCcEEEEEcCC
Q psy8471 179 -GRKVTYVVIGDG 190 (242)
Q Consensus 179 -G~k~tyvvIGDG 190 (242)
.+++++++|--|
T Consensus 167 ~~~gi~v~~v~Pg 179 (277)
T PRK05993 167 QGSGIHVSLIEPG 179 (277)
T ss_pred hhhCCEEEEEecC
Confidence 345777777655
No 255
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=22.97 E-value=67 Score=27.87 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHh--hcCCccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCC
Q psy8471 136 TQLVPALAKVLLF--GLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDG 190 (242)
Q Consensus 136 tqLVPaLAK~LLy--gL~~~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG 190 (242)
++|+|+|.|.+-+ .=-.+|-|.+||..-+.+.+.+-|. +.+.+++.|..
T Consensus 64 ~sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~~~~~~~E~------~~l~~~~~g~~ 114 (218)
T cd00496 64 THTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEF------HQIEGLVVDKG 114 (218)
T ss_pred ccCcHHHHHHHHhcCCCeeEEEEcCeEECCCCCCCcCCcc------EEEEEEEECCC
Confidence 4899999999999 6668899999996543332111111 35667777763
No 256
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.88 E-value=2.1e+02 Score=20.43 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhC--CCcEEEEEcCCHHHHH---HHHHcCCceeEeccccc
Q psy8471 168 ESCFERIGTRFG--RKVTYVVIGDGQDEEA---AAKQNNFPFWRVSSHSD 212 (242)
Q Consensus 168 esCFerI~~RFG--~k~tyvvIGDG~eEe~---AAk~~~~PFwrIssh~D 212 (242)
..-...+.++|. .++.+|.|.-..++++ ..++++.|+..+..+.+
T Consensus 20 ~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (95)
T PF13905_consen 20 LPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDD 69 (95)
T ss_dssp HHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTH
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcc
Confidence 345677888997 8899999887655433 55566566665555544
No 257
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.83 E-value=2.6e+02 Score=26.90 Aligned_cols=80 Identities=8% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhCC--cceEEEEcCCcchHHHHHHHH--------hhcC--------CccccCccccccccChhHHHHHH
Q psy8471 113 SLAIKCLNIINSRS--TCTNVIVTCTQLVPALAKVLL--------FGLG--------DIFQVENIYSSTKIGKESCFERI 174 (242)
Q Consensus 113 s~A~k~L~~i~sR~--~~vNVLVTttqLVPaLAK~LL--------ygL~--------~~fpiENIYSa~kiGKesCFerI 174 (242)
....++++.++... ...++.|+|-.++|..-++.- ..|+ .++|+.+-|+..++- +.|-+.
T Consensus 158 d~vl~ai~~l~~~~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~-~a~~~~- 235 (344)
T PRK14464 158 DNVLEAIDLLGTEGGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELV-ELGEAY- 235 (344)
T ss_pred HHHHHHHHHhhchhcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHH-HHHHHH-
Confidence 33444444444332 467888899888888766553 2333 356777777765554 456444
Q ss_pred HHhhCCCc--EEEEEc---CCHHHH
Q psy8471 175 GTRFGRKV--TYVVIG---DGQDEE 194 (242)
Q Consensus 175 ~~RFG~k~--tyvvIG---DG~eEe 194 (242)
..++|+++ .||.|. |..|+.
T Consensus 236 ~~~~grri~~EyvLl~GVNDs~e~a 260 (344)
T PRK14464 236 ARATGYPIQYQWTLLEGVNDSDEEM 260 (344)
T ss_pred HHHHCCEEEEEEEEeCCCCCCHHHH
Confidence 45679885 567775 555544
No 258
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=22.72 E-value=86 Score=24.17 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhhCCCcE----------EEEEcCCHHHHHHHHH
Q psy8471 167 KESCFERIGTRFGRKVT----------YVVIGDGQDEEAAAKQ 199 (242)
Q Consensus 167 KesCFerI~~RFG~k~t----------yvvIGDG~eEe~AAk~ 199 (242)
.+.-++.+.+.+|-|+. ||+|-+.+|++.|++.
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~ 63 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAA 63 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHH
Confidence 34556777888877754 7899999999998875
No 259
>COG5275 BRCT domain type II [General function prediction only]
Probab=22.56 E-value=1.2e+02 Score=28.67 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred CcEEEEEcC--CHHHHHHHHHcCCcee
Q psy8471 181 KVTYVVIGD--GQDEEAAAKQNNFPFW 205 (242)
Q Consensus 181 k~tyvvIGD--G~eEe~AAk~~~~PFw 205 (242)
|-+|+|.|| |+---+-+|||++|..
T Consensus 194 kTtflvlGdnaGP~K~ekiKqlkIkai 220 (276)
T COG5275 194 KTTFLVLGDNAGPSKMEKIKQLKIKAI 220 (276)
T ss_pred ceeEEEecCCCChHHHHHHHHhCCccc
Confidence 457999999 5667778999999864
No 260
>PRK06483 dihydromonapterin reductase; Provisional
Probab=22.35 E-value=4.5e+02 Score=21.72 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.4
Q ss_pred ccCccccccccChhHHHHHHHHhhCCCcEEEEEcCC
Q psy8471 155 QVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDG 190 (242)
Q Consensus 155 piENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG 190 (242)
|-...|+++|.+=+.-.+.+...++++++..+|-=|
T Consensus 143 ~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg 178 (236)
T PRK06483 143 DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPA 178 (236)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 445789999999999999999999888887766544
No 261
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=22.16 E-value=1.1e+02 Score=27.13 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
|+.++=|||+|| |..+.||+.+.+++- -.||..+
T Consensus 59 gk~~~v~V~a~~-~~~~~Ak~aGa~vvg---~edL~~~ 92 (216)
T PTZ00029 59 KPNLKVCVLGDA-VHCDEAKKLGLDFMD---IEGLKKF 92 (216)
T ss_pred CCCcEEEEECCc-HHHHHHHHcCCCEec---HHHHHHh
Confidence 477889999999 556679999988654 4455554
No 262
>PRK06398 aldose dehydrogenase; Validated
Probab=22.12 E-value=5e+02 Score=22.13 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=31.2
Q ss_pred ccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 155 QVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 155 piENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~ 191 (242)
|-...|+++|.+=++-.+.+...++++++..+|.-|.
T Consensus 139 ~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~ 175 (258)
T PRK06398 139 RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGS 175 (258)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 5567899999999999999988898888888887663
No 263
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.01 E-value=3e+02 Score=25.19 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=50.0
Q ss_pred EEEEcCCcc-hHHHHHHHHhhcCC-ccccCccccccc--cChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCce
Q psy8471 130 NVIVTCTQL-VPALAKVLLFGLGD-IFQVENIYSSTK--IGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPF 204 (242)
Q Consensus 130 NVLVTttqL-VPaLAK~LLygL~~-~fpiENIYSa~k--iGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PF 204 (242)
=|+.+.+.+ +++++++- .+|- ++|- +.+.+ ..|....+.+.++.| +-..|..+-+..|=.++++++++|+
T Consensus 78 ~vi~~~e~~~~~~~~~l~--~~g~~~~~~---~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~ 152 (395)
T PRK09288 78 YIVPEIEAIATDALVELE--KEGFNVVPT---ARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPC 152 (395)
T ss_pred EEEEeeCcCCHHHHHHHH--hcCCeeCCC---HHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCE
Confidence 344444453 56666654 3332 2332 23322 457766665556788 6678999888655456778899996
Q ss_pred e-------------EecccccHHHHHHh
Q psy8471 205 W-------------RVSSHSDLAALYNA 219 (242)
Q Consensus 205 w-------------rIssh~Dl~~L~~A 219 (242)
+ ++.+..|+.+....
T Consensus 153 VvKP~~g~~s~Gv~~v~~~~el~~~~~~ 180 (395)
T PRK09288 153 VVKPVMSSSGKGQSVVRSPEDIEKAWEY 180 (395)
T ss_pred EEEeCCCcCCCCeEEECCHHHHHHHHHH
Confidence 4 56666666655443
No 264
>PRK10976 putative hydrolase; Provisional
Probab=22.00 E-value=1.6e+02 Score=25.40 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=45.0
Q ss_pred ccChhHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHH
Q psy8471 164 KIGKESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAAL 216 (242)
Q Consensus 164 kiGKesCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L 216 (242)
.+.|-+-.+++.+++| ..-.-++|||+.---+.=+.-+.+|--=+.++++.+.
T Consensus 188 gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~ 241 (266)
T PRK10976 188 GVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDL 241 (266)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHh
Confidence 4679999999999998 5567799999988888888888998888888877765
No 265
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=21.95 E-value=1.6e+02 Score=26.57 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhh---CCC---cEEEE---EcCCHHHHHHHHHcCCceeEecccccHHHHHHhhhhchhhhhhchhhhhhh
Q psy8471 167 KESCFERIGTRF---GRK---VTYVV---IGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFLIVEEGLVGTLAE 237 (242)
Q Consensus 167 KesCFerI~~RF---G~k---~tyvv---IGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~l~~~~~~~~~~~~ 237 (242)
.|.||.-|-+-+ |++ |.|++ |-|-.|+..|-.+.=..|+ ..|..+.| .+|.-.-..|++
T Consensus 113 EERcfdaicEdly~rg~~ln~~v~~iNvDIkD~~e~A~~G~kaILelv--------d~L~~~~e----~lE~~~~sil~~ 180 (197)
T COG5211 113 EERCFDAICEDLYARGPSLNQCVFMINVDIKDTPEDAIAGAKAILELV--------DVLAKEEE----RLEYAVDSILRR 180 (197)
T ss_pred hHHHHHHHHHHHHhcCccccccEEEEEeeccCChhhhhhhHHHHHHHH--------HHHHHHHH----HHHHHHHHHHHH
Confidence 479999999944 655 66766 5566555553222212221 12222222 366666778999
Q ss_pred hhh
Q psy8471 238 WQS 240 (242)
Q Consensus 238 ~~~ 240 (242)
|||
T Consensus 181 ~qs 183 (197)
T COG5211 181 YQS 183 (197)
T ss_pred HHh
Confidence 998
No 266
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=21.86 E-value=2e+02 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHcC-------CceeEeccccc
Q psy8471 168 ESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQNN-------FPFWRVSSHSD 212 (242)
Q Consensus 168 esCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~~-------~PFwrIssh~D 212 (242)
..-|+-|.+.|- .|+.||+ .|..++...++.+| +|..+|....+
T Consensus 37 ~~~~~~vAk~fk~gki~Fv~-~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~ 88 (111)
T cd03073 37 RNRVLKVAKDFPDRKLNFAV-ADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG 88 (111)
T ss_pred HHHHHHHHHHCcCCeEEEEE-EcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC
Confidence 345777888895 6888777 56656666777765 78888876544
No 267
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=21.85 E-value=1.3e+02 Score=25.95 Aligned_cols=10 Identities=0% Similarity=-0.316 Sum_probs=6.0
Q ss_pred EEEEcCCcch
Q psy8471 130 NVIVTCTQLV 139 (242)
Q Consensus 130 NVLVTttqLV 139 (242)
.+-++|+.|=
T Consensus 69 ~~~~~~G~lG 78 (195)
T cd02007 69 YDAFGTGHSS 78 (195)
T ss_pred CceECCCchh
Confidence 4556777663
No 268
>PRK10671 copA copper exporting ATPase; Provisional
Probab=21.72 E-value=8.6e+02 Score=25.53 Aligned_cols=96 Identities=20% Similarity=0.355 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCcceEEEEcCCcchHH--HHHHHHhhcCCccccCcccccc-ccChhHHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 115 AIKCLNIINSRSTCTNVIVTCTQLVPA--LAKVLLFGLGDIFQVENIYSST-KIGKESCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 115 A~k~L~~i~sR~~~vNVLVTttqLVPa--LAK~LLygL~~~fpiENIYSa~-kiGKesCFerI~~RFG~k~tyvvIGDG~ 191 (242)
+...++.+.++. .-=+++|.+.--.+ ++| -.|+.. +|+.. -.+|..+.++++++ | -.=++||||.
T Consensus 655 a~~~i~~L~~~g-i~v~~~Tgd~~~~a~~ia~--~lgi~~------~~~~~~p~~K~~~i~~l~~~-~--~~v~~vGDg~ 722 (834)
T PRK10671 655 SVAALQRLHKAG-YRLVMLTGDNPTTANAIAK--EAGIDE------VIAGVLPDGKAEAIKRLQSQ-G--RQVAMVGDGI 722 (834)
T ss_pred HHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHH--HcCCCE------EEeCCCHHHHHHHHHHHhhc-C--CEEEEEeCCH
Confidence 444555554442 22356666655444 333 344443 33332 24688777666544 2 2456899999
Q ss_pred HHHHHHHHcCCceeEecc--------------cccHHHHHHhhhhc
Q psy8471 192 DEEAAAKQNNFPFWRVSS--------------HSDLAALYNALDMG 223 (242)
Q Consensus 192 eEe~AAk~~~~PFwrIss--------------h~Dl~~L~~AL~~~ 223 (242)
-...|+++.++..- +.+ .+|+..+..++++.
T Consensus 723 nD~~al~~Agvgia-~g~g~~~a~~~ad~vl~~~~~~~i~~~i~l~ 767 (834)
T PRK10671 723 NDAPALAQADVGIA-MGGGSDVAIETAAITLMRHSLMGVADALAIS 767 (834)
T ss_pred HHHHHHHhCCeeEE-ecCCCHHHHHhCCEEEecCCHHHHHHHHHHH
Confidence 99999999888652 222 34566666666643
No 269
>KOG3798|consensus
Probab=21.70 E-value=56 Score=31.53 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred cccccccChh-HHHHHHHHhhCCCcEEEEEcCCH
Q psy8471 159 IYSSTKIGKE-SCFERIGTRFGRKVTYVVIGDGQ 191 (242)
Q Consensus 159 IYSa~kiGKe-sCFerI~~RFG~k~tyvvIGDG~ 191 (242)
.|=|-..|=- --|++|.+|||| |.-.+|-=|.
T Consensus 233 fffaGDTGyc~~~F~~IgerfGp-fdLAaiPiGa 265 (343)
T KOG3798|consen 233 FFFAGDTGYCDGEFKKIGERFGP-FDLAAIPIGA 265 (343)
T ss_pred EEecCCCCcccHHHHHHHHhcCC-cceeeccccc
Confidence 3455556633 379999999999 7777765553
No 270
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=21.67 E-value=3.1e+02 Score=20.96 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCcEEEEEcCCHHH-----------HHHHHHcCCceeEeccc--ccHHHHHHhh
Q psy8471 170 CFERIGTRFGRKVTYVVIGDGQDE-----------EAAAKQNNFPFWRVSSH--SDLAALYNAL 220 (242)
Q Consensus 170 CFerI~~RFG~k~tyvvIGDG~eE-----------e~AAk~~~~PFwrIssh--~Dl~~L~~AL 220 (242)
=++.|.++.+.++..++||.-.|. ..-++..++|+..+|+. ..+..|..++
T Consensus 94 ~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 94 WIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred HHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 455677777777888888865554 23456778999998883 4466666555
No 271
>PF12608 DUF3773: Protein of unknown function (DUF3773); InterPro: IPR022250 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are approximately 110 amino acids in length.
Probab=21.51 E-value=63 Score=26.47 Aligned_cols=27 Identities=41% Similarity=0.768 Sum_probs=21.6
Q ss_pred EEcCCcchHHHHH--------HHHhhcCCccccCc
Q psy8471 132 IVTCTQLVPALAK--------VLLFGLGDIFQVEN 158 (242)
Q Consensus 132 LVTttqLVPaLAK--------~LLygL~~~fpiEN 158 (242)
+-.-|.|+|+|+| ||-||++.-|.-.+
T Consensus 30 V~~dtglLp~l~r~a~q~~S~~L~yg~~~~~~~a~ 64 (97)
T PF12608_consen 30 VFSDTGLLPALARRADQLCSLCLFYGLGATFDEAE 64 (97)
T ss_pred hccccchhHHHHHHhhhhhhHhhhcccccchhhhh
Confidence 4678899999987 89999998776533
No 272
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.41 E-value=2e+02 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCC----cceEEEEcCCcchHHHHHHH
Q psy8471 113 SLAIKCLNIINSRS----TCTNVIVTCTQLVPALAKVL 146 (242)
Q Consensus 113 s~A~k~L~~i~sR~----~~vNVLVTttqLVPaLAK~L 146 (242)
....++++.+.... .-.+|.|+|..++|.+.+++
T Consensus 176 ~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~ 213 (356)
T PRK14455 176 DNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFA 213 (356)
T ss_pred HHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHH
Confidence 34445555554331 22388888888888876654
No 273
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.32 E-value=91 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.0
Q ss_pred cChhHHHHHHHHhhC-C-----CcEEEEEcCCHHHHH-HHHHcCC
Q psy8471 165 IGKESCFERIGTRFG-R-----KVTYVVIGDGQDEEA-AAKQNNF 202 (242)
Q Consensus 165 iGKesCFerI~~RFG-~-----k~tyvvIGDG~eEe~-AAk~~~~ 202 (242)
.-|..||+.|.+.|+ . .-.-|||||..=+-- +|..|++
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~ 158 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGS 158 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCc
Confidence 346699999999995 3 456899999977665 6777763
No 274
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=21.20 E-value=1.1e+02 Score=26.43 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHhhh
Q psy8471 180 RKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALD 221 (242)
Q Consensus 180 ~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~AL~ 221 (242)
.++.+||||.. ..++++++.+.-..|...|+..+|..++.
T Consensus 199 ~~~~~v~Ig~~--ta~al~~~~~~~~~ia~~~t~~~l~~~l~ 238 (240)
T PRK09189 199 EKTRFLCLSAR--VAAALPASLRAQALIAAMPDEKSLLSLLS 238 (240)
T ss_pred cccCeEEeCHH--HHHHHhhccccceeecCCCCHHHHHHHhh
Confidence 57889999775 44467777776677888999999988864
No 275
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=21.10 E-value=1.2e+02 Score=21.31 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCc
Q psy8471 168 ESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFP 203 (242)
Q Consensus 168 esCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~P 203 (242)
+..|+.+.++|+.++.|+.|--. +..+.+++++++
T Consensus 33 ~~~l~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~ 67 (101)
T TIGR01068 33 APILEELAKEYEGKVKFVKLNVD-ENPDIAAKYGIR 67 (101)
T ss_pred CHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHcCCC
Confidence 34577777788777777777422 334455665443
No 276
>KOG1689|consensus
Probab=21.08 E-value=58 Score=29.62 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhh--cccCCCCCC
Q psy8471 67 LAFRYRKIKDTYNN--YRNSVGGLL 89 (242)
Q Consensus 67 LAfRyrrIke~Y~~--yk~~v~gLL 89 (242)
+|-|+.|.|+-|.+ .|..|+|+|
T Consensus 52 vadrf~rmk~ey~k~gmRrsvegvl 76 (221)
T KOG1689|consen 52 VADRFARMKIEYMKEGMRRSVEGVL 76 (221)
T ss_pred HHHHHHHHHHHHHhhhhhheeeeeE
Confidence 58999999999988 565666554
No 277
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.01 E-value=81 Score=23.50 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=38.8
Q ss_pred cChhHHHHHHHHhhCCCcEEEEEcCCHHHH-------HHHHHcCCceeEecccccHHHHHHhhhhch
Q psy8471 165 IGKESCFERIGTRFGRKVTYVVIGDGQDEE-------AAAKQNNFPFWRVSSHSDLAALYNALDMGF 224 (242)
Q Consensus 165 iGKesCFerI~~RFG~k~tyvvIGDG~eEe-------~AAk~~~~PFwrIssh~Dl~~L~~AL~~~~ 224 (242)
.|-.+|.+.|+.. +..+|++....++. .-|+++++|++.+.+. ..|=.++-..+
T Consensus 18 ~G~~~v~k~l~~~---~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~---~eLG~~~g~~~ 78 (95)
T PF01248_consen 18 KGIKEVLKALKKG---KAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSK---EELGRACGKKR 78 (95)
T ss_dssp ESHHHHHHHHHTT---CESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHH---HHHHHHTTSSS
T ss_pred EchHHHHHHHHcC---CCcEEEEcCCCChhhhcccchhheeccceeEEEECCH---HHHHHHHCCCC
Confidence 5888899999886 89999987665442 3567899999999854 44444544443
No 278
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=20.97 E-value=1.7e+02 Score=24.82 Aligned_cols=40 Identities=28% Similarity=0.523 Sum_probs=34.0
Q ss_pred cccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHH
Q psy8471 159 IYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAK 198 (242)
Q Consensus 159 IYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk 198 (242)
|.+.++.||-+-=+.+..+.|.++.|+.-.-..|+|-..+
T Consensus 4 i~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 4 VTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHH
Confidence 5678899999988888888899999999998888876555
No 279
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=20.66 E-value=49 Score=29.88 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCHHHHHHHHHcCCceeEecccccHHHHHHh
Q psy8471 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNA 219 (242)
Q Consensus 179 G~k~tyvvIGDG~eEe~AAk~~~~PFwrIssh~Dl~~L~~A 219 (242)
.+++.|+++|+|.+++ ...-|+=|.---++.++.+++..
T Consensus 188 ~~~~~l~i~G~g~~~~--~~~~~V~f~G~~~~eel~~~l~~ 226 (333)
T PRK09814 188 SQGIKLTVFGPNPEDL--ENSANISYKGWFDPEELPNELSK 226 (333)
T ss_pred CCCCeEEEECCCcccc--ccCCCeEEecCCCHHHHHHHHhc
Confidence 3678999999997655 12234555545556777777666
No 280
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=20.44 E-value=1.7e+02 Score=23.07 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=25.3
Q ss_pred HHHHHHhh-CCCcEEEEEcCCHHHHHH--HHHcCCceeEec
Q psy8471 171 FERIGTRF-GRKVTYVVIGDGQDEEAA--AKQNNFPFWRVS 208 (242)
Q Consensus 171 FerI~~RF-G~k~tyvvIGDG~eEe~A--Ak~~~~PFwrIs 208 (242)
|.++.++| .+++.+|.|.-...++.+ +++++.||--+.
T Consensus 53 l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 53 LRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLS 93 (154)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEE
Confidence 67888888 577999998876544432 355666655443
No 281
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=84 Score=32.59 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=27.6
Q ss_pred HHHHHHHhhcccCCCCCC------------------ChhhHHH-HHHHHHHHhhhh
Q psy8471 72 RKIKDTYNNYRNSVGGLL------------------GPTKREQ-WLQLRAEIESTT 108 (242)
Q Consensus 72 rrIke~Y~~yk~~v~gLL------------------~~~kr~~-w~~lr~e~e~~T 108 (242)
+|++++|++.|.+-.-++ |+..||| .+||..|+|-+.
T Consensus 229 sRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 229 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred HHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 578888888886544222 5567777 889999999986
No 282
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.35 E-value=3.5e+02 Score=26.62 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=41.5
Q ss_pred cCccccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHHcCCceeEecc--c-----ccHHHHHHhh
Q psy8471 156 VENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQNNFPFWRVSS--H-----SDLAALYNAL 220 (242)
Q Consensus 156 iENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AAk~~~~PFwrIss--h-----~Dl~~L~~AL 220 (242)
...+|+.| ..-|++|.+|||=+|+|+.=+|..+.+++++..|--.+-|.+ + .|+.++-...
T Consensus 108 ~~~~YG~t----~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 108 PDDLYGGT----YRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred cCCccchH----HHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHH
Confidence 34457755 478999999999999999999997777777753443333333 2 3555554433
No 283
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=20.31 E-value=1.7e+02 Score=25.07 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCHHHHHHHHHcCCce--------------eEecccccHHHHHHhhhhchhhhhh
Q psy8471 180 RKVTYVVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229 (242)
Q Consensus 180 ~k~tyvvIGDG~eEe~AAk~~~~PF--------------wrIssh~Dl~~L~~AL~~~~l~~~~ 229 (242)
+-..|..|-+-.|=.+|+..+++|+ |.|.+..|+.+....+..+-+++|+
T Consensus 7 p~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~ 70 (172)
T PF02222_consen 7 PTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEE 70 (172)
T ss_dssp -B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE
T ss_pred CCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEe
Confidence 4467999988877778999999997 6789999999998888666665553
No 284
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.28 E-value=3.1e+02 Score=25.54 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.7
Q ss_pred cChhHHHHHHHHhhCC----CcEEEEEcCCHHHHHHHHHc---CCceeEecccccHH
Q psy8471 165 IGKESCFERIGTRFGR----KVTYVVIGDGQDEEAAAKQN---NFPFWRVSSHSDLA 214 (242)
Q Consensus 165 iGKesCFerI~~RFG~----k~tyvvIGDG~eEe~AAk~~---~~PFwrIssh~Dl~ 214 (242)
+|+.+-.+++.+.|++ +-.+++||-|.=-...|+.+ +.++.-|+.+++..
T Consensus 211 ~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~ 267 (453)
T PRK09496 211 IGAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERA 267 (453)
T ss_pred EeCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 3778888999988874 35799999999888888875 78999998888743
No 285
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=20.26 E-value=2e+02 Score=22.32 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCHHH-----------HHHHHHcCCceeEecccc--cHHHHHHhh
Q psy8471 179 GRKVTYVVIGDGQDE-----------EAAAKQNNFPFWRVSSHS--DLAALYNAL 220 (242)
Q Consensus 179 G~k~tyvvIGDG~eE-----------e~AAk~~~~PFwrIssh~--Dl~~L~~AL 220 (242)
.++...++||--.|. .+-|+.+++|+..+|+.. ++..+...+
T Consensus 105 ~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 105 SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 366788888865552 234667899999999854 566666555
No 286
>KOG3086|consensus
Probab=20.16 E-value=1.7e+02 Score=28.05 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=39.3
Q ss_pred chHHHHHHHHhhcC--CccccCccccccccChhHHHHHHHHhh--CCCcEEEEEcC
Q psy8471 138 LVPALAKVLLFGLG--DIFQVENIYSSTKIGKESCFERIGTRF--GRKVTYVVIGD 189 (242)
Q Consensus 138 LVPaLAK~LLygL~--~~fpiENIYSa~kiGKesCFerI~~RF--G~k~tyvvIGD 189 (242)
..|-|||+|.-.=+ .+||| .-++...-+|+||..|.+.| .|+--|||-.|
T Consensus 134 ~lP~lak~l~~~~~~~kivPi--lvg~ls~~~e~~~g~lls~Yi~Dp~NlFvvSSD 187 (296)
T KOG3086|consen 134 QLPYLAKVLESRKDTVKIVPI--LVGALSPSVEQCYGKLLSKYIKDPSNLFVVSSD 187 (296)
T ss_pred hhHHHHHHHhhcCceEEEEee--EecccChHHHHHHHHHHHHHhcCccceEEEecc
Confidence 56999999987763 34555 23455567999999999999 79999999887
No 287
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.10 E-value=4.2e+02 Score=26.42 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=50.3
Q ss_pred ceEE-EEcCCcchHHHHHHHHhhcCC--ccccCccccccccChhHHHHHHHHhhCCCcEEEEEcCCHHHHHHH-HHcCCc
Q psy8471 128 CTNV-IVTCTQLVPALAKVLLFGLGD--IFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAA-KQNNFP 203 (242)
Q Consensus 128 ~vNV-LVTttqLVPaLAK~LLygL~~--~fpiENIYSa~kiGKesCFerI~~RFG~k~tyvvIGDG~eEe~AA-k~~~~P 203 (242)
...| ++....++-+++|.|.=.+|- ++-. ++++.-+.=|..|.++--++-.=++||...|=..+| +..+.|
T Consensus 280 ~k~vaI~gd~d~~~gl~~fL~~ElGm~~~~~~-----t~~v~~~~D~~~i~~~i~~~~p~ll~Gss~er~~~a~~~~~~p 354 (468)
T TIGR02014 280 TARFGIVASETYARGIRHVLEDELGLPCLFSL-----ARKAGSKTDNNAVRKEIVQKQPLVLYGSMNEKIYLAEADAKSR 354 (468)
T ss_pred CceEEEEcCHHHHHHHHHHHHHHCCCceEEEe-----ecceeecCCHHHHHHHHhhcCCCEEEEChHhHHHHHhcCCCCC
Confidence 3445 788888999999999944443 3311 134433345667777764444557889886555677 346779
Q ss_pred eeEeccc
Q psy8471 204 FWRVSSH 210 (242)
Q Consensus 204 FwrIssh 210 (242)
|.|++.-
T Consensus 355 lIr~gfP 361 (468)
T TIGR02014 355 FIPASFP 361 (468)
T ss_pred eEEecCC
Confidence 9998764
No 288
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=20.08 E-value=1.8e+02 Score=26.91 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=61.1
Q ss_pred ceEEEEcCCcchHHHHHHHHhhcCCccccCccccc---cccCh---hHHHHHHHHhhC-CCcEEEEEcCCHHHHHHHHHc
Q psy8471 128 CTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSS---TKIGK---ESCFERIGTRFG-RKVTYVVIGDGQDEEAAAKQN 200 (242)
Q Consensus 128 ~vNVLVTttqLVPaLAK~LLygL~~~fpiENIYSa---~kiGK---esCFerI~~RFG-~k~tyvvIGDG~eEe~AAk~~ 200 (242)
.+.|-|=|..=|| |+=|+||-...=.+.|.+|- |++|| -+-+++|..--| +-..-+.+.|-.+|-.||++.
T Consensus 119 g~~vyiYSSGSV~--AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~v 196 (229)
T COG4229 119 GMRVYIYSSGSVK--AQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGV 196 (229)
T ss_pred CCcEEEEcCCCch--hHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhc
Confidence 5667776666677 47799998888888887774 67883 356999999999 557788899999999999999
Q ss_pred CCceeE
Q psy8471 201 NFPFWR 206 (242)
Q Consensus 201 ~~PFwr 206 (242)
+|--.-
T Consensus 197 Gl~t~l 202 (229)
T COG4229 197 GLATGL 202 (229)
T ss_pred chheee
Confidence 886543
No 289
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.04 E-value=63 Score=30.90 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHcCCceeEecccccHHH
Q psy8471 196 AAKQNNFPFWRVSSHSDLAA 215 (242)
Q Consensus 196 AAk~~~~PFwrIssh~Dl~~ 215 (242)
.|+.+|+||.||+.++|+..
T Consensus 84 lA~~l~~~~~rV~~~~~l~~ 103 (327)
T TIGR01650 84 IAARLNWPCVRVNLDSHVSR 103 (327)
T ss_pred HHHHHCCCeEEEEecCCCCh
Confidence 47778899999999998665
Done!