RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8471
(242 letters)
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing,
cytoplasm, developmental protein, magnesium, nucleus,
polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Length = 274
Score = 313 bits (803), Expect = e-108
Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 13/225 (5%)
Query: 1 ECDQVHIDDVCSDDNGQDLGGYNFGADGFQTPGPLQTAGPLHMGGPPPPALCLSSGVRGG 60
+CDQ+H+DDV SDDNGQDL YNF ADGF + P LCL SGV GG
Sbjct: 63 DCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAP-------------GANLCLGSGVHGG 109
Query: 61 VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLSLAIKCLN 120
VDWMRKLAFRYR++K+ YN Y+N+VGGL+G KRE WLQLRAE+E+ TD WL+ ++K LN
Sbjct: 110 VDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALN 169
Query: 121 IINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGR 180
+INSR C NV+VT TQL+PALAKVLL+GLG +F +ENIYS+TK GKESCFERI RFGR
Sbjct: 170 LINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGR 229
Query: 181 KVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
K YVVIGDG +EE AK++N PFWR+S H+DL AL +AL++ +L
Sbjct: 230 KAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL 274
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.005
Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 74/204 (36%)
Query: 39 GPLHM--GGPPPPALC-LSSGVRG-----GVDWMRKLAFRYRKIKDTYNNYRNSVGG--- 87
G ++ GPP +L L+ +R G+D ++ F RK+K N + V
Sbjct: 373 GAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLD-QSRIPFSERKLK-FSNRF-LPVASPFH 428
Query: 88 --LLGPT--KREQWL----------QLRAEIESTTDNWLSLAIKCLNIINSRSTCTNVIV 133
LL P + L ++ + T D + R ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----------SDLRVLSGSIS- 476
Query: 134 TCTQLVPALAK---------------VLLFGLGDIFQVENIYSSTKIGKESCFERIGTRF 178
++V + + +L FG G + + K G G R
Sbjct: 477 --ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT-------GVRV 527
Query: 179 GRKVTYVVIGD---GQDEEAAAKQ 199
+V G D++ KQ
Sbjct: 528 ------IVAGTLDINPDDDYGFKQ 545
Score = 31.2 bits (70), Expect = 0.39
Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 67/216 (31%)
Query: 46 PPPPAL--CLSSG-VR-----GG----VDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTK 93
AL + G + GG D+ +L R + Y Y VG L+ +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----RDL---YQTYHVLVGDLIKFS- 191
Query: 94 REQWLQLRAEIESTTDNWLSLAIKCLNIINSRSTC------TNVIVTC-----TQLV--P 140
+ L + + + L + + S ++ ++C QL
Sbjct: 192 -AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 141 ALAKVLLFGLGDIFQVENIYSSTKIGKESCFERIGTRFGRKVTYVVIGDGQDEEAAAKQN 200
AK+L F G++ + +T + + VT V I + E
Sbjct: 251 VTAKLLGFTPGELR--SYLKGAT-----GHSQGL-------VTAVAIAETDSWE------ 290
Query: 201 NFPFWRVSSHSDLAALYNALDMGFLIVEEGLVGTLA 236
+F ++ A+ + F I G+ A
Sbjct: 291 SF----------FVSVRKAITVLFFI---GVRCYEA 313
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 31.0 bits (71), Expect = 0.31
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 184 YVVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229
Y ++ + + A + ++P + S +D+ + I+E+
Sbjct: 130 YRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEK 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.72
Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 63/200 (31%)
Query: 70 RYRKIKDTYNNYRNS----VGGLLGPTKRE------QWL-----QLRAEIES-------- 106
R++++ D + + + T E ++L L E+ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 107 ----------TTDNWLSLAIKCLNIINSRSTCTNVIVTCTQLVPALAKVLLFGLGDIFQV 156
T DNW + L I S L PA + + L +F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLS-VFP- 382
Query: 157 ENIYSSTKI-------GKESCFERIGTRFGR--------KVTYVVIGDGQDEEAAAKQNN 201
+ + T + +S + + + K + + I E K N
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLEN 441
Query: 202 FPFWRVSSHSDLAALYNALD 221
+ H + YN
Sbjct: 442 ----EYALHRSIVDHYNIPK 457
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 29.8 bits (68), Expect = 0.77
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 184 YVVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229
++ + + D + A + +PF +++ DL + ++ + E+
Sbjct: 128 FISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEK 187
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 29.4 bits (67), Expect = 0.89
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 184 YVVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229
+ + +D E K+ P V + + AL LI+E
Sbjct: 114 FHPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEG 173
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.0 bits (65), Expect = 1.5
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 64 MRKLAFRYRKIKDTYNNYRNSVGGLLGPTKREQWLQLRAEIESTTDNWLS 113
++ +A +KIK+ Y NY S P+ W + + + + LS
Sbjct: 410 LKAVAESMKKIKELYLNYPRS------PSSLGSWRREVDNVLTEFNKSLS 453
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 28.6 bits (63), Expect = 1.9
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 185 VVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFL 225
+ +G+ + A K + + D A L +G
Sbjct: 280 ISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGIS 320
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 28.3 bits (63), Expect = 2.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 27 DGFQTPGPLQTAGPLHMGGPPPPALCLSSG 56
+ + PGP+Q G + L L
Sbjct: 525 NLYLYPGPVQYFGSSEIVDEITETLKLELF 554
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 27.9 bits (63), Expect = 3.0
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 185 VVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229
+V + +Q +P +RV+S D+ AL L E+
Sbjct: 144 LVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEK 202
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 27.3 bits (61), Expect = 4.4
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 182 VTYVVIGDGQDEEAAAKQ-----NNFPFWRVSSHSDLAALYNALD 221
+++G G+ E + N F + D+ A D
Sbjct: 230 AQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAAD 274
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A
{Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Length = 170
Score = 26.6 bits (59), Expect = 5.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 131 VIVTC--TQLVPALAKVLLFGLGDIFQVENI 159
I+TC ++L+ L + L G GD ++N
Sbjct: 28 CIITCMDSRLIDLLERALGIGRGDAKVIKNA 58
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 26.8 bits (60), Expect = 8.1
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 15/63 (23%)
Query: 184 YVVIGDGQDEEAAAKQNNFPF--------------WRVSSHSDLAALYNALDMGFLIVEE 229
++VI + A K P +R+ D + D + E
Sbjct: 110 FLVI-KRDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIE 168
Query: 230 GLV 232
V
Sbjct: 169 EFV 171
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 26.4 bits (59), Expect = 9.3
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 171 FERIGTRFGRKVTYVVIGDGQDEEAAAKQN 200
+I ++ G ++ G D + N
Sbjct: 138 CSKILSKLGVTTSWFDPLIGADIVKHLQPN 167
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 26.4 bits (58), Expect = 9.6
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 39 GPLHMGGPPPPALCLSSGVRGGVDWMRKLAFRYRKIKDTYNNYRNSVGGLLGPTKR 94
G H+ P S G GGV W Y K T YR G+LG +
Sbjct: 35 GDFHLLNDPGVGGGGSGGGGGGVFWDTPSPKVYPKGDTTPGVYRIMARGILGRYQA 90
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 26.3 bits (59), Expect = 9.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 171 FERIGTRFGRKVTYVVIGDGQDEEAAAKQN 200
F+ + R +V +V GD Q AA +
Sbjct: 108 FDSLAKRGCYRVLFVDQGDEQALRAALAEK 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.431
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,901,446
Number of extensions: 230226
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 21
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)