RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8471
         (242 letters)



>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 26.6 bits (58), Expect = 3.2
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 27  DGFQTPGPLQTAGPLHMGGPPPPALCL 53
           + +  PGP+Q  G   +       L L
Sbjct: 522 NLYLYPGPVQYFGSSEIVDEITETLKL 548


>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase
          {Streptomyces venezuelae [TaxId: 54571]}
          Length = 283

 Score = 25.2 bits (54), Expect = 7.2
 Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 2/45 (4%)

Query: 26 ADGFQTPGPLQTA-GPLHMGGPPPPALCLSSGVRGG-VDWMRKLA 68
              +   P+  A GP          +  +     G      +L+
Sbjct: 38 EACSERLDPVLLAGGPTDRAEGRAVLVGCTGTAANGGPHEFLRLS 82


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 179 GRKVTYVVIGDGQDEEAAAKQNNFPFWRVSSHSDLAALYNALDMGFLIVEE 229
           G +  + +I D                     + L +L   L     +V+ 
Sbjct: 257 GSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLK-VLKEVVAMVKT 306


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,728
Number of extensions: 43761
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 5
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)