BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8473
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE 212
R YKTGD G + + +L Y GR D Q+K+ G R++L E+E L S V+ ++ K GE
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE 275
+ +L Y GR D Q+K+ G R++L E+E L S V+ ++ K GE
Sbjct: 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE 212
R YKTGD G + + +L Y GR D Q+K+ G R++L E+E L S V+ ++ K GE
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE 275
+ +L Y GR D Q+K+ G R++L E+E L S V+ ++ K GE
Sbjct: 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 153 RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC 207
RMY+TGD R D +L Y GR D QVKIRG RV+ EVEA L V + +VL
Sbjct: 446 RMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 225 RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLC 270
R D +L Y GR D QVKIRG RV+ EVEA L V + +VL
Sbjct: 456 RRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 105 DIAIVLYTSGSTGIPKEYRRMYK--TGDY 131
D+A V++TSGSTG PK ++ TG Y
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTY 243
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS--EVDKLSV 205
I R+ Y+TGD R D +L+ GR D QVK+RG R++L EV + LS ++D +++
Sbjct: 400 INGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTL 459
Query: 206 LCYKPGEVDQ--VSEVTSE--EIRG 226
L PG Q VS V S +RG
Sbjct: 460 LLNHPGTSKQFLVSFVASSGAAVRG 484
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKIS--EVDKLSVLCYKPGEVDQI 279
D +L+ GR D QVK+RG R++L EV + +S ++D +++L PG Q
Sbjct: 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 99 NNEQSNDIAIVLYTSGSTGIPKEYR 123
NN N A +LYTSGSTG PK R
Sbjct: 170 NNYPENLDAYLLYTSGSTGTPKGVR 194
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
++YKTGD R + D + Y GR D+QVKIRG+RV+L EVE+ L K + + +V +K
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 464
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYK 272
Y GR D+QVKIRG+RV+L EVE+ L K + + +V +K
Sbjct: 425 YLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 464
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+S D+A V+YTSG+TG PK
Sbjct: 180 KSTDLAYVIYTSGTTGNPK 198
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 154 MYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC 207
+Y+TGD R + D + Y GR D QVKIRG+R++L E+E L + V V+
Sbjct: 839 LYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA 893
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 208 YKPGEVDQVSEVTSEEIRGVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKL 266
+KPGE T + R + D + Y GR D QVKIRG+R++L E+E L + V
Sbjct: 833 FKPGET---LYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDA 889
Query: 267 SVLC 270
V+
Sbjct: 890 VVVA 893
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
ND A ++YTSG+TG PK
Sbjct: 607 NDPAYIMYTSGTTGKPK 623
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 155 YKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
Y+TGD G I D + +GR D Q+K+ G R++L E+E + + V V+ Y+P
Sbjct: 378 YRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQP 433
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP 273
D + +GR D Q+K+ G R++L E+E + + V V+ Y+P
Sbjct: 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQP 433
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 153 RMYKTGDY-GRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC--YK 209
R Y+TGD + D YEGR D Q+K+RG R++LS++E A+ + +V V +K
Sbjct: 415 RYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFK 474
Query: 210 PGEVDQVSEVTSEE 223
PG++ V + E
Sbjct: 475 PGDLRLVCAYVARE 488
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 204 SVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 259
SV Y+ G D VSE+ D YEGR D Q+K+RG R++LS++E A+ +
Sbjct: 413 SVRYYRTG--DLVSELP-------DGRFAYEGRADLQIKLRGYRIELSDIETAVRR 459
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 103 SNDIAIVLYTSGSTGIPK 120
+ D+A V+YTSG+TG PK
Sbjct: 174 AEDMAYVIYTSGTTGNPK 191
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 149 IKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196
K + Y TGD G + D+ILLY GR D Q+K G R++L +V L++
Sbjct: 376 FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 207 CYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 259
Y G++ ++E D+ILLY GR D Q+K G R++L +V L++
Sbjct: 381 AYHTGDIGSLTE---------DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 153 RMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG 211
R Y+TGD R + L + GR D QVK+ G R+DL +E + +PG
Sbjct: 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR------------QPG 443
Query: 212 EVDQVSEVTSEEIRGVDDILL-YEGRTDS 239
+D + E GV +L + G+ D+
Sbjct: 444 ILD--CALLVRERNGVKQLLCAWTGKADA 470
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 151 YRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
++ MY +GD R +D + GR D + + G+R+ +E+E+AL ++ + +V+
Sbjct: 492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 103 SNDIAIVLYTSGSTGIPKEYRRMYKTGDY 131
+ D +LYTSGSTG PK ++ TG Y
Sbjct: 255 AEDPLFILYTSGSTGKPKGV--LHTTGGY 281
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 88 IPGESMLHADNNNEQSNDIAIVLYTSGSTG----IPKEYRRMYKTG 129
+P ES + N + +DIA +++TSG+TG +P+ +R Y +
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASA 192
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 131 YGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSE 189
YG+ + W G Y TGD + +D L + GR D +K G +V E
Sbjct: 438 YGKDPERTEETWHDG--------YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE 489
Query: 190 VEAAL 194
VE+AL
Sbjct: 490 VESAL 494
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 147 RAIKYRRMYKTGD-YGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSV 205
RA ++GD Y R+ + +Y GR+D +K+ G V EVE L + V + +V
Sbjct: 400 RATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459
Query: 206 L 206
+
Sbjct: 460 V 460
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 142 WSSGDRAI-----KYRRMYKTGD-YGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALS 195
W + DR + Y Y TGD + D + GR D V + G+R+ +E+EAA+
Sbjct: 487 WKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII 546
Query: 196 KLSEVDKLSVLCY 208
+ V + +V+ +
Sbjct: 547 EDPIVAECAVVGF 559
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 102 QSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSS---GDRAIKYRRMYKTG 158
+SNDIA + YTSGST PK + ++D++++ ++S D I + +
Sbjct: 165 KSNDIAFLQYTSGSTXHPKGVXV-----SHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219
Query: 159 DYGRI 163
D G I
Sbjct: 220 DXGLI 224
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 105 DIAIVLYTSGSTGIPKEYRRMYK--TGDY 131
D+A V++TSGSTG PK ++ TG Y
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTY 243
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 154 MYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
Y+TGD R+ D ++ EGR Q+ G +V EVE L
Sbjct: 408 FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL 449
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 154 MYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
Y+TGD R+ D ++ EGR Q+ G +V EVE L
Sbjct: 408 FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,238,156
Number of Sequences: 62578
Number of extensions: 316445
Number of successful extensions: 671
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 78
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)