Query psy8473
Match_columns 307
No_of_seqs 341 out of 2847
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:45:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 99.9 7.6E-22 2.6E-26 187.6 13.8 117 125-260 341-465 (503)
2 3ni2_A 4-coumarate:COA ligase; 99.9 8.4E-22 2.9E-26 188.7 12.2 154 88-260 321-500 (536)
3 1mdb_A 2,3-dihydroxybenzoate-A 99.9 2.5E-21 8.7E-26 185.5 13.5 92 126-217 373-472 (539)
4 4dg8_A PA1221; ANL superfamily 99.8 8.5E-21 2.9E-25 184.8 15.9 212 88-303 300-559 (620)
5 3rg2_A Enterobactin synthase c 99.8 2E-20 6.8E-25 182.1 14.9 93 125-217 376-476 (617)
6 2d1s_A Luciferase, luciferin 4 99.8 8.6E-21 3E-25 182.2 10.7 154 88-260 333-507 (548)
7 3e7w_A D-alanine--poly(phospho 99.8 4.1E-20 1.4E-24 175.9 15.2 130 88-217 284-440 (511)
8 4gr5_A Non-ribosomal peptide s 99.8 5.4E-21 1.9E-25 184.4 7.9 130 88-217 350-511 (570)
9 3r44_A Fatty acyl COA syntheta 99.8 2.2E-20 7.7E-25 178.1 11.6 150 90-260 308-478 (517)
10 3o83_A Peptide arylation enzym 99.8 5.8E-21 2E-25 183.2 7.1 93 125-217 381-481 (544)
11 3fce_A D-alanine--poly(phospho 99.8 4.5E-20 1.5E-24 175.6 13.1 130 88-217 285-441 (512)
12 1t5h_X 4-chlorobenzoyl COA lig 99.8 3.3E-20 1.1E-24 176.3 11.5 150 90-259 297-467 (504)
13 3g7s_A Long-chain-fatty-acid-- 99.8 2.5E-20 8.6E-25 179.0 9.2 153 89-260 327-507 (549)
14 3rix_A Luciferase, luciferin 4 99.8 5.4E-21 1.8E-25 183.7 3.9 127 91-217 334-481 (550)
15 3etc_A AMP-binding protein; ad 99.8 4.3E-20 1.5E-24 178.5 10.0 128 90-217 366-517 (580)
16 2vsq_A Surfactin synthetase su 99.8 1.2E-19 4.1E-24 190.1 13.6 130 88-217 744-903 (1304)
17 3l8c_A D-alanine--poly(phospho 99.8 4.9E-20 1.7E-24 175.7 9.7 124 88-211 288-439 (521)
18 1amu_A GRSA, gramicidin synthe 99.8 1.6E-19 5.6E-24 173.9 12.9 127 91-217 317-472 (563)
19 1pg4_A Acetyl-COA synthetase; 99.8 8.3E-20 2.8E-24 178.8 10.8 128 90-217 406-559 (652)
20 3nyq_A Malonyl-COA ligase; A/B 99.8 9.1E-20 3.1E-24 173.4 10.3 128 90-217 297-448 (505)
21 3gqw_A Fatty acid AMP ligase; 99.8 1.2E-19 4E-24 174.9 10.3 146 72-217 312-503 (576)
22 3tsy_A Fusion protein 4-coumar 99.8 2.8E-20 9.7E-25 189.9 5.5 130 88-217 368-523 (979)
23 3ivr_A Putative long-chain-fat 99.8 5.3E-20 1.8E-24 175.0 5.1 130 88-217 293-442 (509)
24 1v25_A Long-chain-fatty-acid-C 99.8 2.7E-19 9.3E-24 171.5 8.5 128 90-217 317-477 (541)
25 3ite_A SIDN siderophore synthe 99.8 1.2E-19 4E-24 174.7 5.5 127 88-214 317-467 (562)
26 3c5e_A Acyl-coenzyme A synthet 99.8 4.8E-19 1.6E-23 170.8 8.3 128 90-217 347-498 (570)
27 4gs5_A Acyl-COA synthetase (AM 99.8 1.8E-18 6.1E-23 157.5 10.0 90 128-217 195-296 (358)
28 3kxw_A Saframycin MX1 syntheta 99.8 3.7E-19 1.3E-23 172.0 5.7 143 72-214 302-500 (590)
29 3ipl_A 2-succinylbenzoate--COA 99.8 3.1E-18 1.1E-22 162.5 11.5 128 90-217 298-440 (501)
30 1ry2_A Acetyl-coenzyme A synth 99.7 2.2E-18 7.4E-23 169.1 6.9 127 90-216 412-567 (663)
31 2v7b_A Benzoate-coenzyme A lig 99.7 9.5E-18 3.2E-22 160.2 8.9 119 90-208 325-462 (529)
32 4dg8_A PA1221; ANL superfamily 99.5 8.2E-16 2.8E-20 149.6 0.0 95 185-279 355-460 (620)
33 3etc_A AMP-binding protein; ad 99.5 6.9E-16 2.4E-20 149.0 -0.6 85 217-301 453-541 (580)
34 3qov_A Phenylacetate-coenzyme 99.5 2E-14 6.8E-19 133.9 8.3 121 90-217 231-373 (436)
35 3g7s_A Long-chain-fatty-acid-- 99.5 7.5E-16 2.6E-20 147.8 -2.3 105 181-286 374-490 (549)
36 3rix_A Luciferase, luciferin 4 99.5 4E-15 1.4E-19 142.7 2.8 106 182-287 379-491 (550)
37 3ni2_A 4-coumarate:COA ligase; 99.5 4.8E-15 1.6E-19 141.7 0.6 106 182-287 374-486 (536)
38 4gr5_A Non-ribosomal peptide s 99.5 1.4E-15 4.7E-20 146.6 -4.3 105 181-285 400-519 (570)
39 2vsq_A Surfactin synthetase su 99.5 1.2E-14 4E-19 152.4 2.2 104 181-284 794-910 (1304)
40 1amu_A GRSA, gramicidin synthe 99.4 6E-14 2.1E-18 135.0 6.4 104 181-284 363-479 (563)
41 2y27_A Phenylacetate-coenzyme 99.4 7E-14 2.4E-18 130.2 6.6 121 90-217 235-375 (437)
42 3e7w_A D-alanine--poly(phospho 99.4 1.7E-15 5.8E-20 144.0 -4.7 107 181-287 335-450 (511)
43 3fce_A D-alanine--poly(phospho 99.4 4.5E-15 1.5E-19 141.1 -2.5 106 181-286 336-450 (512)
44 2y4o_A Phenylacetate-coenzyme 99.4 1.8E-13 6.1E-18 127.7 8.1 120 90-216 237-376 (443)
45 3r44_A Fatty acyl COA syntheta 99.4 6.5E-15 2.2E-19 140.2 -1.7 61 217-277 391-452 (517)
46 3l8c_A D-alanine--poly(phospho 99.4 2.3E-14 8E-19 136.4 1.7 107 181-287 339-456 (521)
47 1pg4_A Acetyl-COA synthetase; 99.4 2E-15 6.9E-20 147.8 -6.0 84 217-300 495-582 (652)
48 2d1s_A Luciferase, luciferin 4 99.4 3E-14 1E-18 136.6 0.4 106 182-287 381-493 (548)
49 3tsy_A Fusion protein 4-coumar 99.4 4.7E-15 1.6E-19 151.4 -6.3 105 182-286 421-532 (979)
50 3nyq_A Malonyl-COA ligase; A/B 99.4 7.8E-15 2.7E-19 139.3 -5.8 98 188-285 351-456 (505)
51 3c5e_A Acyl-coenzyme A synthet 99.4 4.5E-14 1.5E-18 136.1 -1.2 70 217-286 434-507 (570)
52 3ivr_A Putative long-chain-fat 99.3 5E-14 1.7E-18 133.7 -1.1 107 181-287 338-452 (509)
53 3ite_A SIDN siderophore synthe 99.3 2.2E-13 7.6E-18 130.8 2.8 93 182-275 366-465 (562)
54 1ry2_A Acetyl-coenzyme A synth 99.3 3.5E-14 1.2E-18 139.2 -3.0 71 217-287 504-578 (663)
55 2v7b_A Benzoate-coenzyme A lig 99.3 1.2E-14 4.1E-19 138.7 -6.2 105 181-286 369-479 (529)
56 1t5h_X 4-chlorobenzoyl COA lig 99.3 1.6E-13 5.4E-18 130.2 0.4 71 217-287 380-454 (504)
57 3ipl_A 2-succinylbenzoate--COA 99.3 2.1E-13 7.3E-18 129.1 1.2 67 217-283 376-446 (501)
58 3t5a_A Long-chain-fatty-acid-- 99.3 9.7E-13 3.3E-17 123.7 3.9 102 72-173 324-480 (480)
59 1v25_A Long-chain-fatty-acid-C 99.3 6E-14 2.1E-18 134.3 -6.4 68 217-284 413-484 (541)
60 3gqw_A Fatty acid AMP ligase; 99.2 6.5E-13 2.2E-17 127.7 -1.7 93 181-274 402-497 (576)
61 3kxw_A Saframycin MX1 syntheta 99.2 1.1E-12 3.9E-17 126.5 -0.0 105 182-286 391-511 (590)
62 3qov_A Phenylacetate-coenzyme 99.2 3.3E-10 1.1E-14 105.3 14.2 68 217-284 300-380 (436)
63 4fuq_A Malonyl COA synthetase; 98.7 6.6E-10 2.3E-14 105.2 -2.7 107 182-288 339-452 (503)
64 1mdb_A 2,3-dihydroxybenzoate-A 98.6 4.3E-10 1.5E-14 107.4 -6.4 103 182-284 370-479 (539)
65 3o83_A Peptide arylation enzym 98.6 7.6E-10 2.6E-14 105.8 -5.7 105 181-285 378-489 (544)
66 3lax_A Phenylacetate-coenzyme 98.5 2.4E-08 8.3E-13 74.5 2.2 53 235-287 1-56 (109)
67 3rg2_A Enterobactin synthase c 98.5 4.4E-09 1.5E-13 102.0 -3.9 105 181-285 373-484 (617)
68 3lax_A Phenylacetate-coenzyme 98.2 1.6E-06 5.3E-11 64.5 5.6 46 172-217 1-46 (109)
69 3gxs_A Phenylacetate-coenzyme 98.2 4.1E-07 1.4E-11 67.8 1.8 51 235-286 1-54 (109)
70 3gxs_A Phenylacetate-coenzyme 98.1 4.8E-06 1.7E-10 61.9 5.9 46 172-217 1-46 (109)
71 2y27_A Phenylacetate-coenzyme 98.1 2.8E-06 9.5E-11 78.7 4.8 69 218-286 306-384 (437)
72 4gs5_A Acyl-COA synthetase (AM 98.0 6.3E-07 2.1E-11 81.1 -0.9 65 218-283 230-302 (358)
73 2y4o_A Phenylacetate-coenzyme 98.0 3.3E-06 1.1E-10 78.3 4.0 68 218-285 308-385 (443)
74 3hgu_A EHPF; phenazine, antibi 97.3 0.00018 6E-09 64.9 4.1 85 87-182 255-367 (369)
75 3t5a_A Long-chain-fatty-acid-- 96.2 0.0016 5.4E-08 60.5 2.2 23 102-124 181-203 (480)
76 3hgu_A EHPF; phenazine, antibi 94.9 0.0064 2.2E-07 54.5 1.0 23 102-124 89-111 (369)
77 4b2g_A GH3-1 auxin conjugating 94.8 0.031 1.1E-06 53.4 5.4 62 125-196 392-458 (609)
78 4eql_A 4-substituted benzoates 94.3 0.051 1.7E-06 51.8 5.6 62 126-197 381-447 (581)
79 4epl_A Jasmonic acid-amido syn 93.3 0.089 3E-06 50.1 5.3 62 125-196 387-453 (581)
80 4b2g_A GH3-1 auxin conjugating 65.4 3.1 0.00011 39.7 2.6 33 227-259 426-458 (609)
81 4eql_A 4-substituted benzoates 58.4 3 0.0001 39.6 1.2 33 228-260 415-447 (581)
82 4epl_A Jasmonic acid-amido syn 52.7 4.9 0.00017 38.1 1.6 31 229-259 423-453 (581)
83 1lbj_A Motilin; A-helix, B-tur 29.6 36 0.0012 17.2 1.9 14 21-34 5-18 (26)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.87 E-value=7.6e-22 Score=187.61 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=96.1
Q ss_pred ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473 125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196 (307)
Q Consensus 125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~ 196 (307)
+++.|..|||+++ ++.|||++++ ....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+.+.+
T Consensus 341 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 341 ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 4567788999999 9999999988 3334789999999999 599999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473 197 LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260 (307)
Q Consensus 197 ~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~ 260 (307)
+|+|.+++|++.+++..+..+.. ++ +...|..++..++.+.|+++
T Consensus 421 ~p~V~~a~vv~~~~~~~~~~~~a-------------~v------~~~~~~~~~~~~l~~~l~~~ 465 (503)
T 4fuq_A 421 MPGVVESAVIGVPHADFGEGVTA-------------VV------VRDKGATIDEAQVLHGLDGQ 465 (503)
T ss_dssp STTEEEEEEEEEEETTTEEEEEE-------------EE------EECTTCCCCHHHHHHHHBTT
T ss_pred CCCeeEEEEEEeEchhcCceeEE-------------EE------EeCCCCCCCHHHHHHHHHhh
Confidence 99999999999988776655522 22 11224456677888888765
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.86 E-value=8.4e-22 Score=188.71 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=123.7
Q ss_pred CCCCcccCCCCCcccccceEEEE--------eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVL--------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGD 146 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~--------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~ 146 (307)
+|++.+++.||+||++...+... ...|+.|.|.... .+++.|..|||+++ ++.|||+++
T Consensus 321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p 400 (536)
T 3ni2_A 321 FPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP 400 (536)
T ss_dssp CTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCCh
Confidence 67888999999999986555431 2357788887432 25678899999999 999999998
Q ss_pred c----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEee
Q psy8473 147 R----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTS 221 (307)
Q Consensus 147 ~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~ 221 (307)
+ ....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 401 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~---- 476 (536)
T 3ni2_A 401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVP---- 476 (536)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE----
T ss_pred hHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCcee----
Confidence 8 3345789999999999 599999999999999999999999999999999999999999999887776655
Q ss_pred ecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473 222 EEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260 (307)
Q Consensus 222 ~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~ 260 (307)
++|+ +...+......+|.++|+++
T Consensus 477 ---------~a~v------v~~~~~~~~~~~l~~~l~~~ 500 (536)
T 3ni2_A 477 ---------VAFV------VKSEKSQATEDEIKQYISKQ 500 (536)
T ss_dssp ---------EEEE------EECTTCCCCHHHHHHHHHTT
T ss_pred ---------EEEE------EecCCCCCCHHHHHHHHHHh
Confidence 2222 11223456678888888765
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.85 E-value=2.5e-21 Score=185.52 Aligned_cols=92 Identities=24% Similarity=0.395 Sum_probs=81.6
Q ss_pred cCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcC
Q psy8473 126 YKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL 197 (307)
Q Consensus 126 ~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~ 197 (307)
++.|..|||+++ ++.|||++++ ....++||+|||+|+++ +|++++.||.+++||++|++|+|.|||+.+.++
T Consensus 373 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 452 (539)
T 1mdb_A 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAH 452 (539)
T ss_dssp CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTS
T ss_pred CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 445677999999 9999999987 23347899999999995 899999999999999999999999999999999
Q ss_pred CCcceEEEEEeeCCCcceEE
Q psy8473 198 SEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 198 p~V~~~~v~~~~~~~~~~~~ 217 (307)
|.|.+++|++.+++..++.+
T Consensus 453 p~V~~a~vv~~~~~~~g~~~ 472 (539)
T 1mdb_A 453 PAVHDAAMVSMPDQFLGERS 472 (539)
T ss_dssp TTEEEEEEEEEEETTTEEEE
T ss_pred CCcceEEEEeccccccCceE
Confidence 99999999999887666554
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.85 E-value=8.5e-21 Score=184.78 Aligned_cols=212 Identities=17% Similarity=0.173 Sum_probs=119.8
Q ss_pred CCCCcccCCCCCcccccceEEEEeC-------CCCcccccccce---------e-cCCcceEEEEEe---eeccccCCcc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLYT-------SGSTGIPKEYRR---------M-YKTGDYGRIVDD---IHRCWSSGDR 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~t-------sGttG~Pkg~~~---------~-~~~g~~Gel~v~---v~~gy~~~~~ 147 (307)
.++++++|.||+||++..+++...+ .++.|+|.+... + ++.|..|||+++ ++.|||++++
T Consensus 300 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~ 379 (620)
T 4dg8_A 300 HPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAA 379 (620)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHH
T ss_pred CCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChh
Confidence 5788899999999998776655432 457788875433 2 678899999999 9999999987
Q ss_pred c----c-----cc--ccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473 148 A----I-----KY--RRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ 215 (307)
Q Consensus 148 ~----~-----~~--~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~ 215 (307)
. . .. .+||+|||++++ ++|+++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.+++....
T Consensus 380 ~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 459 (620)
T 4dg8_A 380 RTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ 459 (620)
T ss_dssp HHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE
T ss_pred hhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE
Confidence 1 1 11 179999999999 5999999999999999999999999999999999999999999888775555
Q ss_pred EEEEeeec-ccCcc------------cccccccccccccccCCcccchhhHHHHHccccccccccccccccccccceEEe
Q psy8473 216 VSEVTSEE-IRGVD------------DILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEA 282 (307)
Q Consensus 216 ~~~~~~~~-~~~~d------------g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~ 282 (307)
.+...... ....+ ..+.++ +.+-+..-.+|+-..+.+.+.....- ........+..+..+|..
T Consensus 460 lv~~~~~~~~~~~~~l~~~Lp~y~~P~~~~~v---~~lP~t~~GKidR~~L~~~~~~~~~~-~~~~~~~~e~~l~~iw~~ 535 (620)
T 4dg8_A 460 LLCAWTGKADASPQALLRQLPTWQRPHACVRV---EALPLTAHGKLDRAALLRRLEEPLER-CASALDPDQRGCAQLWSE 535 (620)
T ss_dssp EEEEEEECTTCCCHHHHHHSCGGGSCSEEEEC---SSCCCC----CCHHHHHHHTCSCC---------------------
T ss_pred EEEEEecChHHHHHHHHHhChhhcCCcEEEEE---CcCCCCcccCHhHHHHhhcccccccc-ccCCCCHHHHHHHHHHHH
Confidence 44332211 10000 001111 22333333366666666554332111 111111223345556766
Q ss_pred ccC---CCCCCCeeeeccccchhh
Q psy8473 283 PSS---AGSTDSSFIVKSREDRAE 303 (307)
Q Consensus 283 ~~~---~~~~ds~f~~~~~~~~~~ 303 (307)
... ....|+||++......|-
T Consensus 536 vL~~~~~~~~d~Ff~lGGdSl~a~ 559 (620)
T 4dg8_A 536 LLGCEVGAADQDFFLCGGNSLLAL 559 (620)
T ss_dssp ------------------------
T ss_pred HhCCCCCCCCCChhhccCcHHHHH
Confidence 433 234789999876665543
No 5
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.84 E-value=2e-20 Score=182.13 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=82.6
Q ss_pred ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473 125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196 (307)
Q Consensus 125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~ 196 (307)
++|.|..|||+++ ++.||+++++ ....++||+|||++++ ++|.++++||.|++||++|++|+|+|||+.+.+
T Consensus 376 ~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 376 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 4567788999999 9999999988 3345789999999999 599999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeCCCcceEE
Q psy8473 197 LSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 197 ~p~V~~~~v~~~~~~~~~~~~ 217 (307)
+|.|.++++++.+++..+..+
T Consensus 456 ~p~V~~a~vv~~~~~~~~~~~ 476 (617)
T 3rg2_A 456 HPAVIYAALVSMEDELMGEKS 476 (617)
T ss_dssp STTEEEEEEEEEEETTTEEEE
T ss_pred CCCeeEEEEEeccCcccCeeE
Confidence 999999999998877655443
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.83 E-value=8.6e-21 Score=182.19 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=120.0
Q ss_pred CCCCcccCCCCCcccccceEEEE---eCCCCcccccccce----------ecCCcceEEEEEe---eeccccCCcc----
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDR---- 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~---- 147 (307)
+++..+++.||+||++..++... ...|+.|+|.+... +++.|..|||+++ ++.|||++++
T Consensus 333 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 412 (548)
T 2d1s_A 333 FNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE 412 (548)
T ss_dssp TTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred cCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhh
Confidence 56677899999999976554422 13578888874322 5677889999999 9999999987
Q ss_pred ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccC
Q psy8473 148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRG 226 (307)
Q Consensus 148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~ 226 (307)
....++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+++.++|.|.+++|++.+++..++.+..
T Consensus 413 ~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a------- 485 (548)
T 2d1s_A 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGA------- 485 (548)
T ss_dssp HBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE-------
T ss_pred cccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEE-------
Confidence 2235789999999999 48999999999999999999999999999999999999999999988776665422
Q ss_pred cccccccccccccccccCCcccchhhHHHHHccc
Q psy8473 227 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260 (307)
Q Consensus 227 ~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~ 260 (307)
|+. ...|..++..+|.++++++
T Consensus 486 ------~vv------~~~~~~~~~~~l~~~~~~~ 507 (548)
T 2d1s_A 486 ------VVV------LESGKNMTEKEVMDYVASQ 507 (548)
T ss_dssp ------EEE------ECTTCCCCHHHHHHHHHTT
T ss_pred ------EEE------EcCCCCCCHHHHHHHHHHh
Confidence 211 1123345667888887664
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.83 E-value=4.1e-20 Score=175.92 Aligned_cols=130 Identities=25% Similarity=0.349 Sum_probs=107.9
Q ss_pred CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~ 147 (307)
+|++.+++.||+||++..++.... .+++.|.|..... +++.|..|||+++ ++.|||++++
T Consensus 284 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 363 (511)
T 3e7w_A 284 FPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPE 363 (511)
T ss_dssp CTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred CCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcc
Confidence 678889999999999876665443 2455777764322 6788999999999 9999999987
Q ss_pred c-------cccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 A-------IKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 ~-------~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
. ....+||+|||+|++++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 364 ~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 440 (511)
T 3e7w_A 364 LTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYL 440 (511)
T ss_dssp HHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEE
T ss_pred cchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEE
Confidence 1 123348999999999999999999999999999999999999999999999999999998876655444
No 8
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.83 E-value=5.4e-21 Score=184.42 Aligned_cols=130 Identities=30% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCCCcccCCCCCcccccceEEEEe-------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc-
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY-------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR- 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~-------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~- 147 (307)
++++.+++.||+||++...+.... +.++.|+|..... +++.|..|||+++ ++.|||++++
T Consensus 350 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~ 429 (570)
T 4gr5_A 350 HPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429 (570)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHH
T ss_pred CCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchh
Confidence 677889999999999876665433 2345787764332 6788999999999 9999999987
Q ss_pred ---cc--------ccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473 148 ---AI--------KYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ 215 (307)
Q Consensus 148 ---~~--------~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~ 215 (307)
.. ..++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.++...+.
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 509 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDK 509 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCe
Confidence 11 234899999999995 999999999999999999999999999999999999999999887765544
Q ss_pred EE
Q psy8473 216 VS 217 (307)
Q Consensus 216 ~~ 217 (307)
.+
T Consensus 510 ~~ 511 (570)
T 4gr5_A 510 QL 511 (570)
T ss_dssp --
T ss_pred EE
Confidence 43
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.82 E-value=2.2e-20 Score=178.06 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=119.2
Q ss_pred CCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473 90 GESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AI 149 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~ 149 (307)
++++++.||+||++...+.... ..|+.|.|..... +++.| .|||+++ ++.|||++++ ..
T Consensus 308 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~ 386 (517)
T 3r44_A 308 NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDA 386 (517)
T ss_dssp TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHT
T ss_pred CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhh
Confidence 5678999999999876665533 3577888875433 45566 7999999 9999999988 23
Q ss_pred ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcc
Q psy8473 150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVD 228 (307)
Q Consensus 150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~d 228 (307)
..++||+|||+|++ ++|+++++||.|++||++|++|+|.|||+.+.++|+|.+++|++.+++..+..+...
T Consensus 387 f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~-------- 458 (517)
T 3r44_A 387 FDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAI-------- 458 (517)
T ss_dssp EETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE--------
T ss_pred hcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEE--------
Confidence 35799999999999 589999999999999999999999999999999999999999999888776655222
Q ss_pred cccccccccccccccCCcccchhhHHHHHccc
Q psy8473 229 DILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260 (307)
Q Consensus 229 g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~ 260 (307)
+ ...+..++..+|.+++.++
T Consensus 459 -----v-------~~~~~~~~~~~l~~~l~~~ 478 (517)
T 3r44_A 459 -----V-------VADQNEVSEQQIVEYCGTR 478 (517)
T ss_dssp -----E-------EECTTTCCHHHHHHHHHHH
T ss_pred -----E-------ECCCCCCCHHHHHHHHHHh
Confidence 1 1123345667888877654
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.82 E-value=5.8e-21 Score=183.21 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=44.1
Q ss_pred ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473 125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196 (307)
Q Consensus 125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~ 196 (307)
+++.|..|||+++ ++.|||++++ ....++||+|||+|+++ +|+++++||.+|+||++|++|+|.|||+.+.+
T Consensus 381 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (544)
T 3o83_A 381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL 460 (544)
T ss_dssp BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------
T ss_pred CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHh
Confidence 3456778999999 9999999987 33357999999999995 99999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeCCCcceEE
Q psy8473 197 LSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 197 ~p~V~~~~v~~~~~~~~~~~~ 217 (307)
+|.|.+++|++.+++..+..+
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~ 481 (544)
T 3o83_A 461 HPEVMHAALVAIVDEQFGEKS 481 (544)
T ss_dssp ---------------------
T ss_pred CCCccEEEEEeccCCCCCceE
Confidence 999999999998877655443
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.82 E-value=4.5e-20 Score=175.65 Aligned_cols=130 Identities=28% Similarity=0.387 Sum_probs=110.3
Q ss_pred CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~ 147 (307)
+|++.+++.||+||++..++.... .+++.|.|..... +++.|..|||+++ ++.|||++++
T Consensus 285 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 364 (512)
T 3fce_A 285 FPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPE 364 (512)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHH
T ss_pred CCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCch
Confidence 678889999999999876665433 4567787764332 5778899999999 9999999987
Q ss_pred -------ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 -------AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 -------~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
..+.++||+|||+|++++|++++.||.+|+||++|++|+|.+||+.+.++|.|.+++|++.+++..+..+
T Consensus 365 ~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 441 (512)
T 3fce_A 365 LTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYL 441 (512)
T ss_dssp HHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEE
T ss_pred hhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEE
Confidence 1234679999999999999999999999999999999999999999999999999999998877665554
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.82 E-value=3.3e-20 Score=176.30 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=115.5
Q ss_pred CCcccCCCCCcccccceEEE-EeCCCCcccccccc------------eecCCcceEEEEEe----eeccccCCcc---cc
Q psy8473 90 GESMLHADNNNEQSNDIAIV-LYTSGSTGIPKEYR------------RMYKTGDYGRIVDD----IHRCWSSGDR---AI 149 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~-~~tsGttG~Pkg~~------------~~~~~g~~Gel~v~----v~~gy~~~~~---~~ 149 (307)
+..+++.||+||+. .+++. ....|+.|.|.... .+++.|..|||+++ ++.||+++++ ..
T Consensus 297 ~~~~~~~YG~TE~~-~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~ 375 (504)
T 1t5h_X 297 PGEKVNIYGTTEAM-NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375 (504)
T ss_dssp CSEEEEEEEETTTE-EEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred Ccceeeeecccccc-ccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhh
Confidence 35689999999983 22221 23467888876321 45778889999997 7899999987 22
Q ss_pred ccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcc
Q psy8473 150 KYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVD 228 (307)
Q Consensus 150 ~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~d 228 (307)
..++||+|||+|+++ +|+++++||.+++||++|++|+|.|||+.+.++|.|.+++|++.+++..++.+..
T Consensus 376 f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a--------- 446 (504)
T 1t5h_X 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA--------- 446 (504)
T ss_dssp EETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEE---------
T ss_pred hcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEE---------
Confidence 247899999999994 9999999999999999999999999999999999999999999988876665522
Q ss_pred cccccccccccccccCCcccchhhHHHHHcc
Q psy8473 229 DILLYEGRTDSQVKIRGNRVDLSEVEAALSK 259 (307)
Q Consensus 229 g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~ 259 (307)
|+. ...|..++..+|.+++++
T Consensus 447 ----~vv------~~~~~~~~~~~l~~~~~~ 467 (504)
T 1t5h_X 447 ----CVV------PRLGETLSADALDTFCRS 467 (504)
T ss_dssp ----EEE------ECTTCCCCHHHHHHHHHT
T ss_pred ----EEE------ecCCcCcCHHHHHHHHhh
Confidence 221 112334566788888875
No 13
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.81 E-value=2.5e-20 Score=178.96 Aligned_cols=153 Identities=21% Similarity=0.253 Sum_probs=104.1
Q ss_pred CCCcccCCCCCcccccceEEEE----eCCCCcccccccce----------ecCCcceEEEEEe---eeccccCCccc---
Q psy8473 89 PGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDRA--- 148 (307)
Q Consensus 89 ~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~~--- 148 (307)
|++++++.||+||++..++... ..+++.|.|.+... +++.|..|||+++ ++.|||++++.
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhh
Confidence 5578899999999987655543 24678898875332 5778889999999 99999999871
Q ss_pred -----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeee
Q psy8473 149 -----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSE 222 (307)
Q Consensus 149 -----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~ 222 (307)
.+..+||+|||+|++ ++|+++++||.|++||++|++|+|.|||+++.++|.|.+++|++.+++..+..+.
T Consensus 407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~---- 482 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPK---- 482 (549)
T ss_dssp SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CE----
T ss_pred hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEE----
Confidence 222349999999999 5999999999999999999999999999999999999999999888776554431
Q ss_pred cccCcccccccccccccccccCC--cccchhhHHHHHccc
Q psy8473 223 EIRGVDDILLYEGRTDSQVKIRG--NRVDLSEVEAALSKI 260 (307)
Q Consensus 223 ~~~~~dg~~~~~gR~dd~ik~~G--~~i~~~eIe~~L~~~ 260 (307)
+|+.. ..+ ..++..+|.++|+++
T Consensus 483 ---------a~vv~------~~~~~~~~~~~~l~~~l~~~ 507 (549)
T 3g7s_A 483 ---------AFIVL------KPEYRGKVDEEDIIEWVRER 507 (549)
T ss_dssp ---------EEEEE------CSTTTTSCCHHHHHHHHHTT
T ss_pred ---------EEEEE------CCCccCcCCHHHHHHHHHHh
Confidence 11111 111 245677888888775
No 14
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.81 E-value=5.4e-21 Score=183.67 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=63.9
Q ss_pred CcccCCCCCcccccceEEEEe---CCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc----ccc
Q psy8473 91 ESMLHADNNNEQSNDIAIVLY---TSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR----AIK 150 (307)
Q Consensus 91 ~~~~~~yg~te~~~~~a~~~~---tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~----~~~ 150 (307)
..+++.||+||++..++.... ..|+.|+|.+.. .+++.|..|||+++ ++.|||++++ ...
T Consensus 334 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~ 413 (550)
T 3rix_A 334 PGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID 413 (550)
T ss_dssp SCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred CccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcC
Confidence 347899999999865544322 357788887432 25778889999999 9999999987 333
Q ss_pred cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
.++||+|||+|++ ++|+++++||.+++||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 414 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 481 (550)
T 3rix_A 414 KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 481 (550)
T ss_dssp TTSCEEEEEEEEECTTCCEEEC----------------------------------------------
T ss_pred CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceE
Confidence 5789999999999 599999999999999999999999999999999999999999998877665544
No 15
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.81 E-value=4.3e-20 Score=178.49 Aligned_cols=128 Identities=25% Similarity=0.305 Sum_probs=108.3
Q ss_pred CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe--------eeccccCCcc--
Q psy8473 90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD--------IHRCWSSGDR-- 147 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~--------v~~gy~~~~~-- 147 (307)
++++++.||+||++..++... ...|+.|+|.+... +++.|..|||+++ ++.|||++++
T Consensus 366 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t 445 (580)
T 3etc_A 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445 (580)
T ss_dssp SCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred CCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence 566899999999976544432 24688999885433 6778999999995 7789999988
Q ss_pred -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..+..+
T Consensus 446 ~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~ 517 (580)
T 3etc_A 446 EETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517 (580)
T ss_dssp HHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred HhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence 2234789999999999 599999999999999999999999999999999999999999999988777665
No 16
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.81 E-value=1.2e-19 Score=190.14 Aligned_cols=130 Identities=23% Similarity=0.332 Sum_probs=107.6
Q ss_pred CCCCcccCCCCCcccccceEEEEe-------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc-
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY-------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR- 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~-------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~- 147 (307)
+++.+++|.||+||++..+++... .+.+.|+|.+... ++|.|..|||+++ ++.||+++++
T Consensus 744 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~ 823 (1304)
T 2vsq_A 744 MGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADL 823 (1304)
T ss_dssp HCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHH
T ss_pred CCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCccc
Confidence 345678999999999877666532 2346777775332 6789999999999 9999999987
Q ss_pred ----c-----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 ----A-----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 ----~-----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
. ....+||+|||+|++ +||.++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.++...+..+
T Consensus 824 T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l 903 (1304)
T 2vsq_A 824 TKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASI 903 (1304)
T ss_dssp HHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEE
T ss_pred chhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEE
Confidence 1 124679999999999 599999999999999999999999999999999999999999988776555444
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.81 E-value=4.9e-20 Score=175.73 Aligned_cols=124 Identities=26% Similarity=0.419 Sum_probs=100.6
Q ss_pred CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR 147 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~ 147 (307)
+|++.+++.||+||++..++.... ..++.|+|.... .+++.|..|||+++ ++.|||++++
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 367 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPE 367 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHH
T ss_pred CCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCch
Confidence 678889999999999876665432 456788887532 26788899999999 9999999988
Q ss_pred c-------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCC
Q psy8473 148 A-------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG 211 (307)
Q Consensus 148 ~-------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~ 211 (307)
. .+.++||+|||+|++ ++|++++.||.+|+||++|++|+|.+||+.+.++|.|.++++++.++.
T Consensus 368 ~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 368 KTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK 439 (521)
T ss_dssp HHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred HhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence 1 235789999999999 599999999999999999999999999999999999999998877654
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.80 E-value=1.6e-19 Score=173.88 Aligned_cols=127 Identities=28% Similarity=0.347 Sum_probs=105.9
Q ss_pred CcccCCCCCcccccceEEEEe------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----c
Q psy8473 91 ESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----A 148 (307)
Q Consensus 91 ~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~ 148 (307)
+.+++.||+||++..++.... .+++.|+|..... +++.|..|||+++ ++.|||++++ .
T Consensus 317 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~ 396 (563)
T 1amu_A 317 VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK 396 (563)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhh
Confidence 568999999999876555432 2457788874332 5778899999999 9999999987 1
Q ss_pred c------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 149 I------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 149 ~------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
. ..++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 397 f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~ 472 (563)
T 1amu_A 397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 472 (563)
T ss_dssp EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEE
T ss_pred cccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEE
Confidence 1 23579999999999 599999999999999999999999999999999999999999999887666554
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.80 E-value=8.3e-20 Score=178.83 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=106.9
Q ss_pred CCcccCCCCCcccccceEEEE-----eCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCccc--
Q psy8473 90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDRA-- 148 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~~-- 148 (307)
++.+++.||+||++..++... ...|+.|+|..... +++.|..|||+++ ++.|||++++.
T Consensus 406 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~ 485 (652)
T 1pg4_A 406 KCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFE 485 (652)
T ss_dssp CSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHH
T ss_pred CCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHH
Confidence 367899999999876544332 24588899875332 5677889999997 78999999871
Q ss_pred ----cccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 149 ----IKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 149 ----~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
...++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..++.+
T Consensus 486 ~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l 559 (652)
T 1pg4_A 486 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559 (652)
T ss_dssp HHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEE
T ss_pred hhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEE
Confidence 1247899999999994 99999999999999999999999999999999999999999999887766655
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.80 E-value=9.1e-20 Score=173.40 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=104.0
Q ss_pred CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecC---CcceEEEEEe---eeccccCCcc----
Q psy8473 90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYK---TGDYGRIVDD---IHRCWSSGDR---- 147 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~---~g~~Gel~v~---v~~gy~~~~~---- 147 (307)
+.++++.||+||++..++... ...++.|+|.+... +++ .|..|||+++ ++.|||++++
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 376 (505)
T 3nyq_A 297 GRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAA 376 (505)
T ss_dssp SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHH
T ss_pred CCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhh
Confidence 456899999999874433221 13577888875333 233 3788999999 9999999987
Q ss_pred ccccccEEeecCeEEE-ECCeEEEeeec-CCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 AIKYRRMYKTGDYGRI-VDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~-~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
....++||+|||+|++ ++|+++++||. +++||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 377 ~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l 448 (505)
T 3nyq_A 377 AFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERI 448 (505)
T ss_dssp TBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred hhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEE
Confidence 3335789999999999 59999999998 5899999999999999999999999999999999888776655
No 21
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.80 E-value=1.2e-19 Score=174.86 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=113.0
Q ss_pred ChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEeCC-------------------------------CCccccc
Q psy8473 72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTS-------------------------------GSTGIPK 120 (307)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~ts-------------------------------GttG~Pk 120 (307)
+.+.+..+...+....+++..+++.||+||++..+++....+ ++.|+|.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~ 391 (576)
T 3gqw_A 312 SAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKAL 391 (576)
T ss_dssp CHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEEC
T ss_pred CHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcC
Confidence 444444444444444556778999999999987655432221 1567776
Q ss_pred ccce---------ecCCcceEEEEEe---eeccccCCcc---ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeee
Q psy8473 121 EYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRV 185 (307)
Q Consensus 121 g~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v 185 (307)
+... +++.|..|||+++ ++.|||++++ ....++||+|||+|++++|+++++||.||+||++|++|
T Consensus 392 ~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~dG~l~~~GR~dd~ik~~G~~v 471 (576)
T 3gqw_A 392 PEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNI 471 (576)
T ss_dssp TTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEETTEEEEEEETTTCEEETTEEE
T ss_pred CCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEECCEEEEEecCcceEEECCEEE
Confidence 4322 6788899999999 9999999987 33457899999999989999999999999999999999
Q ss_pred chhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 186 DLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 186 ~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
+|.|||+++.++|.|.++++++.........+
T Consensus 472 ~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~ 503 (576)
T 3gqw_A 472 WPQDIEYIAEQEPEIHSGDAIAFVTAQEKIIL 503 (576)
T ss_dssp CHHHHHHHHTTSSSCCTTSEEEEECTTSCEEE
T ss_pred CHHHHHHHHHhCcccccccEEEEEcCCccEEE
Confidence 99999999999999998888777665444333
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.79 E-value=2.8e-20 Score=189.93 Aligned_cols=130 Identities=23% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCCCcccCCCCCcccccceEEEE--------eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVL--------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGD 146 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~--------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~ 146 (307)
+|++++++.||+||++..++... ..+|+.|.|.... .+++.|..|||+++ ++.|||+++
T Consensus 368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p 447 (979)
T 3tsy_A 368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 447 (979)
T ss_dssp CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCCh
Confidence 67888999999999986655431 2467888887432 25778889999999 999999998
Q ss_pred c----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 147 R----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 147 ~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
+ ....++||+|||++++ ++|+++++||.|++||++|++|+|.|||+.+.++|.|.+++|++.+++..++.+
T Consensus 448 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~ 523 (979)
T 3tsy_A 448 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVP 523 (979)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------
T ss_pred hhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEE
Confidence 7 3345789999999999 589999999999999999999999999999999999999999988876555443
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.78 E-value=5.3e-20 Score=175.05 Aligned_cols=130 Identities=24% Similarity=0.325 Sum_probs=70.8
Q ss_pred CCCCcccCCCCCcccccceEEEEeC--CCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---ccc
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLYT--SGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AIK 150 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~t--sGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~~ 150 (307)
+|++.+++.||+||++..++..... .++.|+|..... +++.|..|||+++ ++.|||++++ ...
T Consensus 293 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f 372 (509)
T 3ivr_A 293 CPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF 372 (509)
T ss_dssp CTTCEEEEEEEEGGGTEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT
T ss_pred cCCCeEEcccCccccccccccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh
Confidence 6788899999999998766655442 456788875332 6788999999999 9999999987 223
Q ss_pred cccEEeecCeEEE-ECCeEEEeeec--CCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 151 YRRMYKTGDYGRI-VDDILLYEGRT--DSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 151 ~~~~~~tGD~g~~-~~g~l~~~GR~--~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
.++||+|||+|++ ++|++++.||. +++||++|++|+|.+||+.+.++|.|.+++|++.+++..+..+
T Consensus 373 ~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~ 442 (509)
T 3ivr_A 373 RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI 442 (509)
T ss_dssp GGGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence 4789999999999 59999999999 8999999999999999999999999999999998877655444
No 24
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.77 E-value=2.7e-19 Score=171.48 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=95.1
Q ss_pred CCcccCCCCCcccccceEEEEeC--------------CCCcccccccce---------ecCC--cceEEEEEe---eecc
Q psy8473 90 GESMLHADNNNEQSNDIAIVLYT--------------SGSTGIPKEYRR---------MYKT--GDYGRIVDD---IHRC 141 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~~t--------------sGttG~Pkg~~~---------~~~~--g~~Gel~v~---v~~g 141 (307)
++++++.||+||++..++..... .++.|+|..... +++. +..|||+++ ++.|
T Consensus 317 g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~G 396 (541)
T 1v25_A 317 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396 (541)
T ss_dssp TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSS
T ss_pred CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhcc
Confidence 66789999999998665543221 367888875332 3442 357999999 9999
Q ss_pred ccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473 142 WSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV 216 (307)
Q Consensus 142 y~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~ 216 (307)
||++++ ....++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..
T Consensus 397 Y~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~ 476 (541)
T 1v25_A 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 476 (541)
T ss_dssp CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred ccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCce
Confidence 999987 2233789999999999 48999999999999999999999999999999999999999999988876655
Q ss_pred E
Q psy8473 217 S 217 (307)
Q Consensus 217 ~ 217 (307)
+
T Consensus 477 ~ 477 (541)
T 1v25_A 477 P 477 (541)
T ss_dssp E
T ss_pred E
Confidence 5
No 25
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.77 E-value=1.2e-19 Score=174.71 Aligned_cols=127 Identities=25% Similarity=0.346 Sum_probs=69.1
Q ss_pred CCCCcccCCCCCcccccceEEEEe----CCCCcccccccce----------ecCCcceEEEEEe---eeccccCCccc--
Q psy8473 88 IPGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDRA-- 148 (307)
Q Consensus 88 ~~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~~-- 148 (307)
.+++.+++.||+||++..++.... ..++.|.|.+... +++.|..|||+++ ++.|||++++.
T Consensus 317 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 317 SDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp CSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred CCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence 457889999999999876655443 2466788874332 5788889999999 99999999882
Q ss_pred ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcC-CCcceEEEEEeeCCCcc
Q psy8473 149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL-SEVDKLSVLCYKPGEVD 214 (307)
Q Consensus 149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~-p~V~~~~v~~~~~~~~~ 214 (307)
.+.++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+++.++ |.+.++++++.+++..+
T Consensus 397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~ 467 (562)
T 3ite_A 397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTS 467 (562)
T ss_dssp EEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCc
Confidence 223459999999999 5999999999999999999999999999999998 77778777777665443
No 26
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.76 E-value=4.8e-19 Score=170.84 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=105.0
Q ss_pred CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe--------eeccccCCcc--
Q psy8473 90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD--------IHRCWSSGDR-- 147 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~--------v~~gy~~~~~-- 147 (307)
++.+++.||+||++..++... ...|+.|+|..... +++.|..|||+++ ++.|||++++
T Consensus 347 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t 426 (570)
T 3c5e_A 347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKT 426 (570)
T ss_dssp SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHH
T ss_pred CCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHh
Confidence 456899999999874332221 23578888875332 6788899999994 7899999987
Q ss_pred -ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 148 -AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 148 -~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
....++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus 427 ~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~ 498 (570)
T 3c5e_A 427 AANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498 (570)
T ss_dssp HHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred hhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEE
Confidence 22237899999999994 99999999999999999999999999999999999999999999887666554
No 27
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.75 E-value=1.8e-18 Score=157.50 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=67.5
Q ss_pred CcceEEEEEe---eeccccCCcc-----ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHH---hc
Q psy8473 128 TGDYGRIVDD---IHRCWSSGDR-----AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL---SK 196 (307)
Q Consensus 128 ~g~~Gel~v~---v~~gy~~~~~-----~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l---~~ 196 (307)
.+..|++.+. +..+|.+..+ ....++||+|||+|+++++.++++||.||+||++|++|+|.|||+.+ ..
T Consensus 195 ~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 195 GPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp STTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred ccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence 3344555554 4555655444 33457899999999997555788899999999999999999999776 46
Q ss_pred CCCcceEEEE-EeeCCCcceEE
Q psy8473 197 LSEVDKLSVL-CYKPGEVDQVS 217 (307)
Q Consensus 197 ~p~V~~~~v~-~~~~~~~~~~~ 217 (307)
+|.|.+++++ +.+++..++.+
T Consensus 275 ~p~V~~a~vv~~~~d~~~ge~~ 296 (358)
T 4gs5_A 275 HLNIGNAFFCWWEPDAKLGQKL 296 (358)
T ss_dssp HHTCCCCEEEEEEEETTTEEEE
T ss_pred CCCccEEEEEEecCCccCCEEE
Confidence 7999988876 56677666655
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.75 E-value=3.7e-19 Score=172.01 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=107.7
Q ss_pred ChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEe------------------------------CCCCcccccc
Q psy8473 72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLY------------------------------TSGSTGIPKE 121 (307)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~------------------------------tsGttG~Pkg 121 (307)
+.+.+..+...+....+++..+++.||+||++..++.... ..++.|.|..
T Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~ 381 (590)
T 3kxw_A 302 REETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ 381 (590)
T ss_dssp CHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESS
T ss_pred CHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCC
Confidence 3344444444444444567789999999999876554211 1245677764
Q ss_pred c--------ceecCCcceEEEEEe---eeccccCCccc----c--------ccccEEeecCeEEEECCeEEEeeecCCeE
Q psy8473 122 Y--------RRMYKTGDYGRIVDD---IHRCWSSGDRA----I--------KYRRMYKTGDYGRIVDDILLYEGRTDSQV 178 (307)
Q Consensus 122 ~--------~~~~~~g~~Gel~v~---v~~gy~~~~~~----~--------~~~~~~~tGD~g~~~~g~l~~~GR~~~~i 178 (307)
. ..+++.|..|||+++ ++.|||++++. . ...+||+|||+|++++|+++++||.||+|
T Consensus 382 ~v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~I 461 (590)
T 3kxw_A 382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLI 461 (590)
T ss_dssp EEEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHH
T ss_pred CeEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceE
Confidence 3 235778889999999 99999999871 1 12339999999999999999999999999
Q ss_pred EECCeeechhHHHHHH-hcCCCcc--eEEEEEeeCCCcc
Q psy8473 179 KIRGNRVDLSEVEAAL-SKLSEVD--KLSVLCYKPGEVD 214 (307)
Q Consensus 179 ~~~G~~v~~~eiE~~l-~~~p~V~--~~~v~~~~~~~~~ 214 (307)
|++|++|+|.|||+.+ ..+|.|. ++++++.+++...
T Consensus 462 k~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~ 500 (590)
T 3kxw_A 462 IIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEY 500 (590)
T ss_dssp HHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEE
T ss_pred EECCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCc
Confidence 9999999999999999 7889998 7888888766543
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.75 E-value=3.1e-18 Score=162.49 Aligned_cols=128 Identities=10% Similarity=0.142 Sum_probs=105.7
Q ss_pred CCcccCCCCCcccccceEEEE-----eCCCCccccccccee----cCCcceEEEEEe---eeccccCCcc--ccccccEE
Q psy8473 90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRRM----YKTGDYGRIVDD---IHRCWSSGDR--AIKYRRMY 155 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~~----~~~g~~Gel~v~---v~~gy~~~~~--~~~~~~~~ 155 (307)
++++++.||+||++...+... ...++.|.|...... ...+..|||+++ ++.|||++++ ....++||
T Consensus 298 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~ 377 (501)
T 3ipl_A 298 NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYF 377 (501)
T ss_dssp TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEE
T ss_pred CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCce
Confidence 566899999999875544432 246788988754431 124567999999 9999999987 22457899
Q ss_pred eecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 156 KTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 156 ~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
+|||+|++ ++|++++.||.+|+||++|++|+|.+||+++.++|+|.++++++.+++..+..+
T Consensus 378 ~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~ 440 (501)
T 3ipl_A 378 NTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440 (501)
T ss_dssp EEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred ecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceE
Confidence 99999999 599999999999999999999999999999999999999999999888766655
No 30
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.73 E-value=2.2e-18 Score=169.10 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=103.6
Q ss_pred CCcccCCCCCcccccceEEEEe------CCCCcccccccce----------ecCC-cceEEEEEe-----eeccccCCcc
Q psy8473 90 GESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR----------MYKT-GDYGRIVDD-----IHRCWSSGDR 147 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~----------~~~~-g~~Gel~v~-----v~~gy~~~~~ 147 (307)
++.+++.||+||++..++.... ..|+.|.|..... +++. |..|||+++ ++.|||++++
T Consensus 412 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~ 491 (663)
T 1ry2_A 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHD 491 (663)
T ss_dssp SSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHH
T ss_pred CceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChH
Confidence 4679999999999865554322 3578888874322 3344 778999998 7899999987
Q ss_pred c------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473 148 A------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV 216 (307)
Q Consensus 148 ~------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~ 216 (307)
. ...++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..++.
T Consensus 492 ~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~ 567 (663)
T 1ry2_A 492 RYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQA 567 (663)
T ss_dssp HHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCC
T ss_pred HHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeE
Confidence 1 224789999999999 49999999999999999999999999999999999999999999887655443
No 31
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.71 E-value=9.5e-18 Score=160.22 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=95.7
Q ss_pred CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---cccc
Q psy8473 90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AIKY 151 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~~~ 151 (307)
++.+++.||+||++...+... ...++.|+|..... +++.|..|||+++ ++.|||++++ ....
T Consensus 325 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~ 404 (529)
T 2v7b_A 325 GCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL 404 (529)
T ss_dssp SCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE
T ss_pred CCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh
Confidence 566899999999865433322 13478888875332 6778899999999 8999999987 2223
Q ss_pred ccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEe
Q psy8473 152 RRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY 208 (307)
Q Consensus 152 ~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~ 208 (307)
++||+|||+++++ +|++++.||.+++||++|++|+|.+||+.+.++|.|.+++|++.
T Consensus 405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~ 462 (529)
T 2v7b_A 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV 462 (529)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE
T ss_pred cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 7899999999994 99999999999999999999999999999999999999999988
No 32
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.52 E-value=8.2e-16 Score=149.62 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=69.4
Q ss_pred echhHHHHHHhcCCCcceEEEE----------EeeCCCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhH
Q psy8473 185 VDLSEVEAALSKLSEVDKLSVL----------CYKPGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEV 253 (307)
Q Consensus 185 v~~~eiE~~l~~~p~V~~~~v~----------~~~~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eI 253 (307)
+.++++++++.+.|.+...+.. ..+.......++.++|. ..++||+++|+||+|||||++|+||+|.||
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI 434 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL 434 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence 3455556666666666554421 11111111256777776 457999999999999999999999999999
Q ss_pred HHHHccccccccccccccccccccce
Q psy8473 254 EAALSKISEVDKLSVLCYKPGEVDQI 279 (307)
Q Consensus 254 e~~L~~~p~V~~~~vv~~~~~~~~~~ 279 (307)
|+.|.+||+|.+++|+..++.....+
T Consensus 435 E~~l~~~p~V~~a~Vv~~~~~~~~~l 460 (620)
T 4dg8_A 435 EQRFRRQPGILDCALLVRERNGVKQL 460 (620)
T ss_dssp HHHHHTSTTEEEEEEEEEEETTEEEE
T ss_pred HHHHHhCCCccEEEEEEEeCCCceEE
Confidence 99999999999999998776544443
No 33
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.52 E-value=6.9e-16 Score=149.04 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=66.3
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCCCCe
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGSTDSS 292 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~ds~ 292 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++. +...+|+++..+...+..
T Consensus 453 wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~ 532 (580)
T 3etc_A 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS 532 (580)
T ss_dssp EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHH
Confidence 4666665 457999999999999999999999999999999999999999999987764 445568887766543333
Q ss_pred eeeccccch
Q psy8473 293 FIVKSREDR 301 (307)
Q Consensus 293 f~~~~~~~~ 301 (307)
...+++..+
T Consensus 533 ~~~~l~~~l 541 (580)
T 3etc_A 533 LKNELQDHV 541 (580)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334454443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.51 E-value=2e-14 Score=133.89 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCcccCCCCCcccccc-eEEEEeCCCCccccccc----------ceecCCcceEEEEEe-eeccccCCccccccccEEee
Q psy8473 90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPKEY----------RRMYKTGDYGRIVDD-IHRCWSSGDRAIKYRRMYKT 157 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pkg~----------~~~~~~g~~Gel~v~-v~~gy~~~~~~~~~~~~~~t 157 (307)
++.+++.||+||++.. +++....+...+.|... ..+++.|..|||+++ .... ....+||+|
T Consensus 231 g~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~-------~~~~~~y~T 303 (436)
T 3qov_A 231 NVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE-------MMPLIRYRT 303 (436)
T ss_dssp TSEEEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC-------SSCCCSEEE
T ss_pred CccEEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC-------CceEEEEEc
Confidence 5678999999998543 33332222223333211 225678889999997 2111 113679999
Q ss_pred cCeEEEE-CC------e---EEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 158 GDYGRIV-DD------I---LLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 158 GD~g~~~-~g------~---l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
||+++++ +| + +++.||.+|+||++|++|+|.+||+++.++|.|.++++++.+++..+..+
T Consensus 304 GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 9999995 65 4 68999999999999999999999999999999999999888765554444
No 35
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.50 E-value=7.5e-16 Score=147.77 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCC--------CcceEEEEeeec-ccCcccccccccccccccccCCcccchh
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG--------EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLS 251 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~ 251 (307)
.|..+.++++++++.+.|.+...+... +.. ..+..++.++|. ..++||+++|+||+|||||++|+||+|.
T Consensus 374 ~g~~~~~g~~GEl~v~g~~v~~GY~~~-~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (549)
T 3g7s_A 374 DGRELGVGESGEIVIRGPNIFKGYWKR-EKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF 452 (549)
T ss_dssp SCCEECTTCCEEEEEESTTSCSEETTC-TTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CH
T ss_pred CCcCCCCCCceEEEEECcchhhhhCCC-hhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHH
Confidence 467777787888888888877655321 111 123346777776 4578999999999999999999999999
Q ss_pred hHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473 252 EVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA 286 (307)
Q Consensus 252 eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~ 286 (307)
|||+.|.+||+|.+++|++.++. +...+|+++.++
T Consensus 453 eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 490 (549)
T 3g7s_A 453 ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPE 490 (549)
T ss_dssp HHHHHHTTSTTEEEEEEECCCC------CEEEEEECST
T ss_pred HHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence 99999999999999999987664 344567777654
No 36
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.50 E-value=4e-15 Score=142.70 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=32.1
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 379 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 458 (550)
T 3rix_A 379 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL 458 (550)
T ss_dssp CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------------
T ss_pred CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHH
Confidence 666777777777777777766543211000 001224666665 4579999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEeccCCC
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG 287 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~ 287 (307)
.+||+|.+++|++.++. +...+|++..++.
T Consensus 459 ~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~ 491 (550)
T 3rix_A 459 LQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491 (550)
T ss_dssp ---------------------------------
T ss_pred HhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence 99999999999987764 4445577766544
No 37
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.47 E-value=4.8e-15 Score=141.74 Aligned_cols=106 Identities=19% Similarity=0.102 Sum_probs=76.8
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 374 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 453 (536)
T 3ni2_A 374 GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 453 (536)
T ss_dssp CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHH
T ss_pred CcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHH
Confidence 666667777777777777766543211000 001234666665 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEeccCCC
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG 287 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~ 287 (307)
.+||+|.+++|++.++. +...+|++...+.
T Consensus 454 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 486 (536)
T 3ni2_A 454 IAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS 486 (536)
T ss_dssp HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred HhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence 99999999999987654 3344577765543
No 38
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.45 E-value=1.4e-15 Score=146.63 Aligned_cols=105 Identities=25% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEe--------eC---CCcceEEEEeeec-ccCcccccccccccccccccCCccc
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCY--------KP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRV 248 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~--------~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i 248 (307)
.|..+.++++++++.+.|.+...++... .+ ...+..++.++|. ..++||+++|+||+|||||++|+||
T Consensus 400 ~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v 479 (570)
T 4gr5_A 400 DLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRV 479 (570)
T ss_dssp TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------
T ss_pred CCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEe
Confidence 4667777777777888887766553210 01 1123356777776 4588999999999999999999999
Q ss_pred chhhHHHHHccccccccccccccccc---cccceEEeccC
Q psy8473 249 DLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSS 285 (307)
Q Consensus 249 ~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~ 285 (307)
+|.|||+.|.+||+|.+++|++.++. +...+|++...
T Consensus 480 ~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~ 519 (570)
T 4gr5_A 480 EPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAER 519 (570)
T ss_dssp ----------------------------------------
T ss_pred CHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecC
Confidence 99999999999999999999987654 33445666543
No 39
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.45 E-value=1.2e-14 Score=152.43 Aligned_cols=104 Identities=22% Similarity=0.195 Sum_probs=75.4
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEE--------eeCC-CcceEEEEeeec-ccCcccccccccccccccccCCcccch
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLC--------YKPG-EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDL 250 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~--------~~~~-~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~ 250 (307)
.|..++++++++++.+.+++...+... .+++ ..+..+|.++|. .+.+||.+.|+||+|||||++|+||++
T Consensus 794 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~ 873 (1304)
T 2vsq_A 794 QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL 873 (1304)
T ss_dssp TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCH
Confidence 355566666666666767665443210 0111 134567888876 458999999999999999999999999
Q ss_pred hhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473 251 SEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS 284 (307)
Q Consensus 251 ~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~ 284 (307)
.|||+.|.+||+|.+++|+..++.. ...+|++..
T Consensus 874 ~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~ 910 (1304)
T 2vsq_A 874 EEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR 910 (1304)
T ss_dssp HHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred HHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence 9999999999999999999766533 333466643
No 40
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.44 E-value=6e-14 Score=134.98 Aligned_cols=104 Identities=22% Similarity=0.117 Sum_probs=75.8
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEe--------eCC-CcceEEEEeeecc-cCcccccccccccccccccCCcccch
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCY--------KPG-EVDQVSEVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDL 250 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~--------~~~-~~~~~~~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~ 250 (307)
.|..+.++++++++.+.|.+...+.... .++ ..+..++.++|.. .++||+++|+||+|||||++|+||+|
T Consensus 363 ~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p 442 (563)
T 1amu_A 363 NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 442 (563)
T ss_dssp TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred CcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCH
Confidence 4566666777777777777765543110 000 1133567777764 58999999999999999999999999
Q ss_pred hhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473 251 SEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS 284 (307)
Q Consensus 251 ~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~ 284 (307)
.|||+.|.+||+|.+++|++.++.. ...+|++..
T Consensus 443 ~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 479 (563)
T 1amu_A 443 EEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE 479 (563)
T ss_dssp HHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred HHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC
Confidence 9999999999999999999876643 334466543
No 41
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.44 E-value=7e-14 Score=130.21 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCcccCCCCCcccccc-eEEEEeCCCCccccc--c----------cceecCCcceEEEEEeeeccccCCccccccccEEe
Q psy8473 90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPK--E----------YRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYK 156 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pk--g----------~~~~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~ 156 (307)
++.+++.||+||++.. +++.. ..+..|.+. . ...+++.|..|||+++ +..+ .....+||+
T Consensus 235 g~~v~~~YG~TE~~g~~~~~~~-~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~---~~t~---~~~~~~~y~ 307 (437)
T 2y27_A 235 GIDAVDIYGLSEVMGPGVASEC-VETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFT---SLTK---EALPIIRYR 307 (437)
T ss_dssp TSEEEEEEEETTTTEEEEEECC-TTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEE---ESSC---SSSCCCSEE
T ss_pred CcCEEecCCchhhcCCeeEEec-CCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEe---cCCc---CCchhheee
Confidence 5668999999997432 33322 222223332 1 1235678889999997 1111 011357999
Q ss_pred ecCeEEEE--CCeE-----EEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 157 TGDYGRIV--DDIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 157 tGD~g~~~--~g~l-----~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
|||+++++ +|++ ++.||.+|+|+++|++|+|.+||+++.++|.|.++++++.++......+
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l 375 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL 375 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence 99999994 4875 8999999999999999999999999999999998888877655444443
No 42
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.44 E-value=1.7e-15 Score=144.04 Aligned_cols=107 Identities=20% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeC------CCcceEEEEeeecccCcccccccccccccccccCCcccchhhHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP------GEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVE 254 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~------~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe 254 (307)
.|..+.++++++++.+.|.+...+...... ...+..++.++|....+||+++|+||+|||||++|+||+|.|||
T Consensus 335 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE 414 (511)
T 3e7w_A 335 EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIE 414 (511)
T ss_dssp TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHH
T ss_pred CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHH
Confidence 466677777777777777766543210000 01233456777765557999999999999999999999999999
Q ss_pred HHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473 255 AALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG 287 (307)
Q Consensus 255 ~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~ 287 (307)
+.|.+||.|.+++|++.++.. ...+++++..+.
T Consensus 415 ~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~ 450 (511)
T 3e7w_A 415 FHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE 450 (511)
T ss_dssp HHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC
T ss_pred HHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc
Confidence 999999999999999766543 334566665543
No 43
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.43 E-value=4.5e-15 Score=141.11 Aligned_cols=106 Identities=22% Similarity=0.168 Sum_probs=75.4
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCC------CcceEEEEeeecccCcccccccccccccccccCCcccchhhHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG------EVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVE 254 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~------~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe 254 (307)
.|..+.++++++++.+.|.+...+....... ..+..++.++|....+||+++|+||+||+||++|+||+|.|||
T Consensus 336 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE 415 (512)
T 3fce_A 336 DGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIE 415 (512)
T ss_dssp SSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHH
T ss_pred CCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHH
Confidence 4566666666666777776654432100000 0124567777765458999999999999999999999999999
Q ss_pred HHHccccccccccccccccccc---cceEEeccCC
Q psy8473 255 AALSKISEVDKLSVLCYKPGEV---DQIWEAPSSA 286 (307)
Q Consensus 255 ~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~ 286 (307)
+.|.+||.|.+++|++.+++.. ..+++++...
T Consensus 416 ~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 416 HHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp HHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred HHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 9999999999999997765443 3346665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.43 E-value=1.8e-13 Score=127.72 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=86.4
Q ss_pred CCcccCCCCCcccccc-eEEEEeCCCCccccc--c----------cceecCCcceEEEEEeeeccccCCccccccccEEe
Q psy8473 90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPK--E----------YRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYK 156 (307)
Q Consensus 90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pk--g----------~~~~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~ 156 (307)
++.+++.||+||++.. +++.. ..+..|.+. . ...+++.|..|||+++ ++.+. ....+||+
T Consensus 237 g~~v~~~YG~TE~~g~~~~~~~-~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~---~~t~~---~~p~~~y~ 309 (443)
T 2y4o_A 237 GIDALDIYGLSEVMGPGVACEC-VETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFT---SLTKE---AMPVIRYR 309 (443)
T ss_dssp TCEEEEEEEETTTTEEEEEEEC-TTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEE---ESSCS---SSCCSSEE
T ss_pred CcCEEeccCchhhcCCeEEecc-CCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEe---CCCcc---cChhheee
Confidence 5668999999997433 33322 222224332 1 1225678889999997 21110 11357999
Q ss_pred ecCeEEEE-C-CeE-----EEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473 157 TGDYGRIV-D-DIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV 216 (307)
Q Consensus 157 tGD~g~~~-~-g~l-----~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~ 216 (307)
|||+++++ + |++ ++.||.+|+||++|++|+|.+||+++.++|.|.++++++.+++.....
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~ 376 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDR 376 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEE
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCce
Confidence 99999995 6 876 899999999999999999999999999999999998887765543333
No 45
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.43 E-value=6.5e-15 Score=140.24 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=53.2
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD 277 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~ 277 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++....
T Consensus 391 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccC
Confidence 4666665 457899999999999999999999999999999999999999999987765433
No 46
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.42 E-value=2.3e-14 Score=136.39 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeC------CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP------GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEV 253 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~------~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eI 253 (307)
.|..+.++++++++.+.|.+...+...... ...+..++.++|. ..++||+++++||+||+||++|+||+|.||
T Consensus 339 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 418 (521)
T 3l8c_A 339 DGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDV 418 (521)
T ss_dssp TSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHH
T ss_pred CcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHH
Confidence 466677777777777777766443210000 0012346667775 458999999999999999999999999999
Q ss_pred HHHHccccccccccccccccc----cccceEEeccCCC
Q psy8473 254 EAALSKISEVDKLSVLCYKPG----EVDQIWEAPSSAG 287 (307)
Q Consensus 254 e~~L~~~p~V~~~~vv~~~~~----~~~~~~v~~~~~~ 287 (307)
|+.|.+||.|.+++|++.++. +...+|+++.++.
T Consensus 419 E~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp HHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred HHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 999999999999999976532 3344677776653
No 47
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.42 E-value=2e-15 Score=147.75 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=64.7
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCCCCe
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGSTDSS 292 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~ds~ 292 (307)
++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+||+|.+++|++.++. +...+|++++.+...+..
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~ 574 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 574 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence 4566665 457899999999999999999999999999999999999999999987653 445568887765433322
Q ss_pred eeeccccc
Q psy8473 293 FIVKSRED 300 (307)
Q Consensus 293 f~~~~~~~ 300 (307)
...+++..
T Consensus 575 ~~~~l~~~ 582 (652)
T 1pg4_A 575 LYAEVRNW 582 (652)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23344443
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.39 E-value=3e-14 Score=136.60 Aligned_cols=106 Identities=14% Similarity=-0.004 Sum_probs=75.2
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 381 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l 460 (548)
T 2d1s_A 381 KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVL 460 (548)
T ss_dssp CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHH
T ss_pred CccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHH
Confidence 555666666666666666655443110000 001224566665 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEeccCCC
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG 287 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~ 287 (307)
.+||+|.+++|++.++. +...+|+++.++.
T Consensus 461 ~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~ 493 (548)
T 2d1s_A 461 LQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493 (548)
T ss_dssp HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred HhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC
Confidence 99999999999987764 3445677766543
No 49
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.38 E-value=4.7e-15 Score=151.41 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=37.2
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 421 ~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l 500 (979)
T 3tsy_A 421 GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 500 (979)
T ss_dssp CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------
T ss_pred CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHH
Confidence 666777777777777777766543211000 001224666665 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEeccCC
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSA 286 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~ 286 (307)
.+||.|.+++|++.++. +...+|++..++
T Consensus 501 ~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~ 532 (979)
T 3tsy_A 501 IGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532 (979)
T ss_dssp --------------------------------
T ss_pred HhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence 99999999999987664 344457765544
No 50
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.36 E-value=7.8e-15 Score=139.35 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=68.1
Q ss_pred hHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCccccccccccc-ccccccCCcccchhhHHHHHccccc
Q psy8473 188 SEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKISE 262 (307)
Q Consensus 188 ~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~-dd~ik~~G~~i~~~eIe~~L~~~p~ 262 (307)
+++++++.+.|.+...+...... ......++.++|. ..++||+++|+||+ |||||++|+||++.|||+.|.+||+
T Consensus 351 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~ 430 (505)
T 3nyq_A 351 ESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430 (505)
T ss_dssp CCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTT
T ss_pred CceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcC
Confidence 44455555666665443311000 0001224666665 45789999999998 5999999999999999999999999
Q ss_pred cccccccccccc---cccceEEeccC
Q psy8473 263 VDKLSVLCYKPG---EVDQIWEAPSS 285 (307)
Q Consensus 263 V~~~~vv~~~~~---~~~~~~v~~~~ 285 (307)
|.+++|++.++. +...+|+++..
T Consensus 431 V~~a~Vv~~~~~~~g~~l~a~vv~~~ 456 (505)
T 3nyq_A 431 VREAAVTGEPDPDLGERIVAWIVPAD 456 (505)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred ccEEEEEeeECCCCCcEEEEEEEECC
Confidence 999999987664 34445777654
No 51
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.35 E-value=4.5e-14 Score=136.07 Aligned_cols=70 Identities=26% Similarity=0.309 Sum_probs=58.5
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA 286 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~ 286 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++. +...+|+++..+
T Consensus 434 ~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 507 (570)
T 3c5e_A 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQ 507 (570)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGG
T ss_pred ccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCc
Confidence 4556665 457899999999999999999999999999999999999999999987654 344557776554
No 52
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.35 E-value=5e-14 Score=133.74 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=34.7
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeC--CCcceEEEEeeec-ccCccccccccccc--ccccccCCcccchhhHHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP--GEVDQVSEVTSEE-IRGVDDILLYEGRT--DSQVKIRGNRVDLSEVEA 255 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~--~~~~~~~~~~~~~-~~~~dg~~~~~gR~--dd~ik~~G~~i~~~eIe~ 255 (307)
.|..+.++++++++.+.|.+...+...... ......++.++|. ..++||+++|+||+ ||+||++|+||+|.|||+
T Consensus 338 ~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~ 417 (509)
T 3ivr_A 338 EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEG 417 (509)
T ss_dssp TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--------------------
T ss_pred CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHH
Confidence 466667777777777777776554311000 0011234666665 45789999999999 999999999999999999
Q ss_pred HHcccccccccccccccccc---ccceEEeccCCC
Q psy8473 256 ALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG 287 (307)
Q Consensus 256 ~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~ 287 (307)
.|.+||+|.+++|++.++.. ...+|+++.++.
T Consensus 418 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 452 (509)
T 3ivr_A 418 ALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGE 452 (509)
T ss_dssp -----------------------------------
T ss_pred HHHhCCCceeEEEEeccccccCcEEEEEEEeCCCC
Confidence 99999999999999877643 344577765543
No 53
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.34 E-value=2.2e-13 Score=130.84 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=37.3
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCCC-----cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE-----VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEA 255 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~-----~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~ 255 (307)
|..+.++++++++.+.|.+...+.. .+... .+..++.++|. ..++||+++|+||+|||||++|+||+|.|||+
T Consensus 366 ~~~~~~g~~GEl~v~g~~v~~GY~~-~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 366 NEHVKKGMAGELVIEGSLVANGYLN-RPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp SCBCCTTSCEEEEEESTTSCCEESS-CTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred CCCCCCCCceEEEEeccccchhhCC-CccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence 5667777778888888888765532 11111 12336677775 45799999999999999999999999999999
Q ss_pred HHccc-ccccccccccccccc
Q psy8473 256 ALSKI-SEVDKLSVLCYKPGE 275 (307)
Q Consensus 256 ~L~~~-p~V~~~~vv~~~~~~ 275 (307)
.|.+| |.+.+++|+..++..
T Consensus 445 ~l~~~~~~~~~~~v~~~~~~~ 465 (562)
T 3ite_A 445 VIRSLSPTDIDVVTLLLNHPG 465 (562)
T ss_dssp ---------------------
T ss_pred HHHhcCCCceeEEEEEecCCC
Confidence 99999 778888877665543
No 54
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.34 E-value=3.5e-14 Score=139.18 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=58.6
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCC
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAG 287 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~ 287 (307)
++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+||+|.+++|++.++ ++...+|++++++.
T Consensus 504 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 4666665 45789999999999999999999999999999999999999999998765 34555688877654
No 55
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.34 E-value=1.2e-14 Score=138.70 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=67.8
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA 256 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~ 256 (307)
.|..+.++++++++.+.|.+...+.. .+... ....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.
T Consensus 369 ~g~~~~~g~~GEl~v~g~~~~~gY~~-~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~ 447 (529)
T 2v7b_A 369 AGHAVPDGEVGDLYIKGPSAAVMYWN-NREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMV 447 (529)
T ss_dssp TSCBCCTTSCEEEEEECTTCCCCBTT-CHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHH
T ss_pred CCCCCCCCCccEEEEecCCcccccCC-ChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHH
Confidence 35556666666666666665443211 00000 00124556664 557899999999999999999999999999999
Q ss_pred Hcccccccccccccccc--ccccceEEeccCC
Q psy8473 257 LSKISEVDKLSVLCYKP--GEVDQIWEAPSSA 286 (307)
Q Consensus 257 L~~~p~V~~~~vv~~~~--~~~~~~~v~~~~~ 286 (307)
|.+||+|.+++|++... ++...+|+++..+
T Consensus 448 l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~ 479 (529)
T 2v7b_A 448 LVQHDAVLEAAVVGVDHGGLVKTRAFVVLKRE 479 (529)
T ss_dssp HTTSTTEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred HHhCCCcceEEEEEecCCCceEEEEEEEecCC
Confidence 99999999999998732 2334457776544
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.32 E-value=1.6e-13 Score=130.18 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=59.6
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG 287 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~ 287 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++. +...+|+++..+.
T Consensus 380 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 454 (504)
T 1t5h_X 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE 454 (504)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC
T ss_pred ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc
Confidence 4666665 457899999999999999999999999999999999999999999987764 3445677776543
No 57
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.32 E-value=2.1e-13 Score=129.09 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=56.0
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEec
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAP 283 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~ 283 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++.. ...+|++.
T Consensus 376 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~ 446 (501)
T 3ipl_A 376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446 (501)
T ss_dssp EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEe
Confidence 4566665 4578999999999999999999999999999999999999999999877654 33445554
No 58
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.29 E-value=9.7e-13 Score=123.69 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=73.0
Q ss_pred ChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEe----------------------------CCCCccccccc-
Q psy8473 72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLY----------------------------TSGSTGIPKEY- 122 (307)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~----------------------------tsGttG~Pkg~- 122 (307)
+.+.+..+...+....+|+..+++.||+||++..+++... ..++.|+|.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~ 403 (480)
T 3t5a_A 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPI 403 (480)
T ss_dssp CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSE
T ss_pred CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCE
Confidence 3344444444444444577789999999999876554321 12467777651
Q ss_pred --------ceecCCcceEEEEEe---eeccccCCcc----cc-----------ccccEEeecCeEEEECCeEEEeee
Q psy8473 123 --------RRMYKTGDYGRIVDD---IHRCWSSGDR----AI-----------KYRRMYKTGDYGRIVDDILLYEGR 173 (307)
Q Consensus 123 --------~~~~~~g~~Gel~v~---v~~gy~~~~~----~~-----------~~~~~~~tGD~g~~~~g~l~~~GR 173 (307)
..+++.|..|||+++ ++.|||++++ .. ..++||+|||+|++++|+++++||
T Consensus 404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~ddG~l~~~GR 480 (480)
T 3t5a_A 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGR 480 (480)
T ss_dssp EEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEETTEEEECC-
T ss_pred EEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEECCEEEEeCC
Confidence 236788999999999 9999999987 11 146799999999999999999998
No 59
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.26 E-value=6e-14 Score=134.28 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=44.9
Q ss_pred EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473 217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS 284 (307)
Q Consensus 217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~ 284 (307)
++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++.. ...+|+++.
T Consensus 413 ~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 484 (541)
T 1v25_A 413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 484 (541)
T ss_dssp CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence 4556665 4578999999999999999999999999999999999999999999876643 334465554
No 60
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.21 E-value=6.5e-13 Score=127.71 Aligned_cols=93 Identities=14% Similarity=0.017 Sum_probs=65.7
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
.|..+.++++++++.+.|.+...+... +.. .....++.++|....+||+++|+||+|||||++|+||+|.|||+.|
T Consensus 402 ~g~~~~~g~~GEl~v~g~~~~~gY~~~-~~~~~~~~~~g~~~TGDl~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 480 (576)
T 3gqw_A 402 AGMPVAERVVGHICISGPSLMSGYFGD-QVSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIA 480 (576)
T ss_dssp TSCBCCTTBCEEEEEESTTSCCCBTTC-HHHHHHHHHHSCEEEEEEEEEETTEEEEEEETTTCEEETTEEECHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCccccccccCC-ccccccccCCCeeeccceEEEECCEEEEEecCcceEEECCEEECHHHHHHHH
Confidence 355566666666666666655433210 000 0012246666654447999999999999999999999999999999
Q ss_pred ccccccccccccccccc
Q psy8473 258 SKISEVDKLSVLCYKPG 274 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~ 274 (307)
.+||+|.+++|+...+.
T Consensus 481 ~~~p~V~~~~vv~~~~~ 497 (576)
T 3gqw_A 481 EQEPEIHSGDAIAFVTA 497 (576)
T ss_dssp TTSSSCCTTSEEEEECT
T ss_pred HhCcccccccEEEEEcC
Confidence 99999999888865443
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.21 E-value=1.1e-12 Score=126.50 Aligned_cols=105 Identities=13% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEee-----------CCCcceEEEEeeecccCcccccccccccccccccCCcccch
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYK-----------PGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDL 250 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~-----------~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~ 250 (307)
|..+.++++++++.+.|.+...+..... +...+..++.++|...-.||+++|+||+|||||++|+||+|
T Consensus 391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~Ik~~G~~v~p 470 (590)
T 3kxw_A 391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYP 470 (590)
T ss_dssp CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHHHHHHHTTHH
T ss_pred CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceEEECCEecCH
Confidence 5666677777777777777654421100 00012236677776554499999999999999999999999
Q ss_pred hhHHHHH-ccccccc--ccccccccccc--ccceEEeccCC
Q psy8473 251 SEVEAAL-SKISEVD--KLSVLCYKPGE--VDQIWEAPSSA 286 (307)
Q Consensus 251 ~eIe~~L-~~~p~V~--~~~vv~~~~~~--~~~~~v~~~~~ 286 (307)
.|||+.| ..||.|. +++|++.++.. ...+++++..+
T Consensus 471 ~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~ 511 (590)
T 3kxw_A 471 QDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNR 511 (590)
T ss_dssp HHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCT
T ss_pred HHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccc
Confidence 9999999 8899998 78888765543 33346655543
No 62
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.17 E-value=3.3e-10 Score=105.29 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=54.6
Q ss_pred EEEeeecc-cCccc------c---cccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEec
Q psy8473 217 SEVTSEEI-RGVDD------I---LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAP 283 (307)
Q Consensus 217 ~~~~~~~~-~~~dg------~---~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~ 283 (307)
++.++|.. .+++| + +.++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++ ++...+|+++
T Consensus 300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~ 379 (436)
T 3qov_A 300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL 379 (436)
T ss_dssp SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence 45666653 35666 5 7999999999999999999999999999999999999987665 3444557776
Q ss_pred c
Q psy8473 284 S 284 (307)
Q Consensus 284 ~ 284 (307)
.
T Consensus 380 ~ 380 (436)
T 3qov_A 380 S 380 (436)
T ss_dssp C
T ss_pred c
Confidence 6
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.70 E-value=6.6e-10 Score=105.23 Aligned_cols=107 Identities=15% Similarity=0.013 Sum_probs=76.4
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+...... ......++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 339 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 418 (503)
T 4fuq_A 339 GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEI 418 (503)
T ss_dssp CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHH
T ss_pred CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence 56667777777777777766543211000 0001224666665 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEeccCCCC
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAGS 288 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~ 288 (307)
.+||+|.+++|++.++. +...+|++...+..
T Consensus 419 ~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 452 (503)
T 4fuq_A 419 DAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT 452 (503)
T ss_dssp HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred HhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC
Confidence 99999999999987654 34445777665443
No 64
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.63 E-value=4.3e-10 Score=107.39 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=70.2
Q ss_pred CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473 182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257 (307)
Q Consensus 182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L 257 (307)
|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus 370 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 449 (539)
T 1mdb_A 370 DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL 449 (539)
T ss_dssp SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHH
T ss_pred CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHH
Confidence 445555555555555555543322100000 001124566665 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccc---cccceEEecc
Q psy8473 258 SKISEVDKLSVLCYKPG---EVDQIWEAPS 284 (307)
Q Consensus 258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~ 284 (307)
.+||+|.+++|++.++. +...+|+++.
T Consensus 450 ~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~ 479 (539)
T 1mdb_A 450 LAHPAVHDAAMVSMPDQFLGERSCVFIIPR 479 (539)
T ss_dssp TTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred HhCCCcceEEEEeccccccCceEEEEEEEC
Confidence 99999999999987764 3344577665
No 65
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.60 E-value=7.6e-10 Score=105.82 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=33.0
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA 256 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~ 256 (307)
.|..+.++++++++.+.|.+...+....... .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.
T Consensus 378 ~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 457 (544)
T 3o83_A 378 QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKL 457 (544)
T ss_dssp TSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------
T ss_pred CCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHH
Confidence 3555566666666666666544332110000 001234666665 457899999999999999999999999999999
Q ss_pred Hccccccccccccccccc---cccceEEeccC
Q psy8473 257 LSKISEVDKLSVLCYKPG---EVDQIWEAPSS 285 (307)
Q Consensus 257 L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~ 285 (307)
|.+||+|.+++|++.++. +...+|++...
T Consensus 458 l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 489 (544)
T 3o83_A 458 ILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN 489 (544)
T ss_dssp --------------------------------
T ss_pred HHhCCCccEEEEEeccCCCCCceEEEEEEeCC
Confidence 999999999999987664 34445666554
No 66
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.53 E-value=2.4e-08 Score=74.49 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=43.2
Q ss_pred cccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473 235 GRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG 287 (307)
Q Consensus 235 gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~ 287 (307)
.|+||||+++|.|++|.|||+.|.+||+|.++++++.++. +...++++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~ 56 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF 56 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc
Confidence 3899999999999999999999999999999988876553 3334566665544
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.48 E-value=4.4e-09 Score=102.04 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=71.7
Q ss_pred CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473 181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA 256 (307)
Q Consensus 181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~ 256 (307)
.|..+.++++++++.+.|.+...+....... .....++.++|. ..++||.+.|+||+|||||++|+||+|.|||+.
T Consensus 373 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~ 452 (617)
T 3rg2_A 373 EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL 452 (617)
T ss_dssp TSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHH
T ss_pred CCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHH
Confidence 3555566666666666666544332100000 001224666665 457899999999999999999999999999999
Q ss_pred Hccccccccccccccccc---cccceEEeccC
Q psy8473 257 LSKISEVDKLSVLCYKPG---EVDQIWEAPSS 285 (307)
Q Consensus 257 L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~ 285 (307)
|.+||+|.+++|+..++. +...+|++...
T Consensus 453 l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~ 484 (617)
T 3rg2_A 453 LLRHPAVIYAALVSMEDELMGEKSCAYLVVKE 484 (617)
T ss_dssp HTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred HHhCCCeeEEEEEeccCcccCeeEEEEEEeCC
Confidence 999999999999977653 33344666543
No 68
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.23 E-value=1.6e-06 Score=64.51 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=41.2
Q ss_pred eecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 172 GRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 172 GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
.|.||+|+++|.|++|.+||+++.++|+|.++++++.++...+..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~ 46 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEM 46 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeE
Confidence 3889999999999999999999999999999999988877666555
No 69
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.19 E-value=4.1e-07 Score=67.78 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=41.0
Q ss_pred cccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473 235 GRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA 286 (307)
Q Consensus 235 gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~ 286 (307)
||.||||+++|.|++|.|||+.|.+||+|.+++++..++. +...+++++ ++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~ 54 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQ 54 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CT
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cC
Confidence 7999999999999999999999999999998777654432 334456666 44
No 70
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.09 E-value=4.8e-06 Score=61.85 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=39.7
Q ss_pred eecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473 172 GRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS 217 (307)
Q Consensus 172 GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~ 217 (307)
||.+|+|+++|.+++|.+||+++.++|+|.++++++.+++..+..+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l 46 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEM 46 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEE
Confidence 7999999999999999999999999999998888777655444444
No 71
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=98.06 E-value=2.8e-06 Score=78.67 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEeeecc-cCc-cccc-----ccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCC
Q psy8473 218 EVTSEEI-RGV-DDIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSA 286 (307)
Q Consensus 218 ~~~~~~~-~~~-dg~~-----~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~ 286 (307)
+.++|.. .++ +|++ .++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++ ++...+++++.++
T Consensus 306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~ 384 (437)
T 2y27_A 306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE 384 (437)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT
T ss_pred eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC
Confidence 4555543 345 5886 899999999999999999999999999999999998887543 3344456666544
No 72
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=97.99 E-value=6.3e-07 Score=81.05 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=47.6
Q ss_pred EEeeec-ccCcccccccccccccccccCCcccchhhHHHHH---cccccccccccc-cccccc---ccceEEec
Q psy8473 218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL---SKISEVDKLSVL-CYKPGE---VDQIWEAP 283 (307)
Q Consensus 218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L---~~~p~V~~~~vv-~~~~~~---~~~~~v~~ 283 (307)
+.++|. ..+++| +.|+||+|||||++|+||+|.|||+.| .+||+|.+++|+ ..++.. ...+|++.
T Consensus 230 ~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~ 302 (358)
T 4gs5_A 230 VQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIEN 302 (358)
T ss_dssp EEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEES
T ss_pred eecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEEC
Confidence 344443 335667 667899999999999999999999876 568999999887 455543 33445554
No 73
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=97.99 E-value=3.3e-06 Score=78.26 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=52.8
Q ss_pred EEeeec-ccCcc-ccc-----ccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccC
Q psy8473 218 EVTSEE-IRGVD-DIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSS 285 (307)
Q Consensus 218 ~~~~~~-~~~~d-g~~-----~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~ 285 (307)
+.++|. ..+++ |++ .++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++ ++...+++++.+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~ 385 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS 385 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence 455554 33467 887 899999999999999999999999999999999988876543 233445666543
No 74
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.25 E-value=0.00018 Score=64.86 Aligned_cols=85 Identities=8% Similarity=0.020 Sum_probs=48.2
Q ss_pred CCCCCcccCCCCCcccccceEEEEeCCC-Ccccc------ccc----------ceecCCcceEEEEEe-eeccccCCccc
Q psy8473 87 NIPGESMLHADNNNEQSNDIAIVLYTSG-STGIP------KEY----------RRMYKTGDYGRIVDD-IHRCWSSGDRA 148 (307)
Q Consensus 87 ~~~~~~~~~~yg~te~~~~~a~~~~tsG-ttG~P------kg~----------~~~~~~g~~Gel~v~-v~~gy~~~~~~ 148 (307)
.+|++.+++.||+||++... ....+ +.|.| ... ..+++.|..|||++. +....
T Consensus 255 ~~p~~~v~~~YG~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~------ 325 (369)
T 3hgu_A 255 ILPDCEFSASYGSTSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWA------ 325 (369)
T ss_dssp TCTTSEEEEEEEEGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTE------
T ss_pred hCCCcEEEcccCchhhhcce---eccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCccc------
Confidence 36788999999999987432 22334 37877 422 236788999999998 43322
Q ss_pred cccccEEeecCeEEE-E--CCe-------EEEeeecCCeEEECC
Q psy8473 149 IKYRRMYKTGDYGRI-V--DDI-------LLYEGRTDSQVKIRG 182 (307)
Q Consensus 149 ~~~~~~~~tGD~g~~-~--~g~-------l~~~GR~~~~i~~~G 182 (307)
.-..|+|||.+.. . +|. +..++|.+++.++.|
T Consensus 326 --~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 326 --FYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp --EEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred --ccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 1235889999877 2 332 233455555655555
No 75
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=96.22 E-value=0.0016 Score=60.52 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=14.9
Q ss_pred cccceEEEEeCCCCcccccccce
Q psy8473 102 QSNDIAIVLYTSGSTGIPKEYRR 124 (307)
Q Consensus 102 ~~~~~a~~~~tsGttG~Pkg~~~ 124 (307)
.++++++++|||||||.|||+++
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~ 203 (480)
T 3t5a_A 181 EYPSTAYLQYTSGSTRTPAGVVM 203 (480)
T ss_dssp SCCSEEEEECC------CCCEEE
T ss_pred CCCceEEEEecCCCCCCCcEEEE
Confidence 45689999999999999999988
No 76
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=94.89 E-value=0.0064 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.2
Q ss_pred cccceEEEEeCCCCcccccccce
Q psy8473 102 QSNDIAIVLYTSGSTGIPKEYRR 124 (307)
Q Consensus 102 ~~~~~a~~~~tsGttG~Pkg~~~ 124 (307)
.+.++++++|||||||.|||++.
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~ 111 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVA 111 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEE
T ss_pred CccccEEEEECCCCCCCCCEEEE
Confidence 35678999999999999999877
No 77
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=94.76 E-value=0.031 Score=53.44 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=49.8
Q ss_pred ecCCcceEEEEEeeeccccCCccccccccEEeecCeEEEE-----CCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473 125 MYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIV-----DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196 (307)
Q Consensus 125 ~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~-----~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~ 196 (307)
.+..|..++|++....|+|. |++||+.++. ...+.|+||.++++++.|+++.+.+++.++..
T Consensus 392 eVe~G~~YelViTt~~GL~R----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 392 HVEVGKEYELVITTYAGLYR----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp GCCTTCEEEEEEECTTSCCS----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred HcCCCCeEEEehhhhhhhhh----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 45677778888863344432 8999999984 24688999999999999999999999988874
No 78
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=94.31 E-value=0.051 Score=51.80 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=48.4
Q ss_pred cCCcceEEEEEeeeccccCCccccccccEEeecCeEEEE-----CCeEEEeeecCCeEEECCeeechhHHHHHHhcC
Q psy8473 126 YKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIV-----DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL 197 (307)
Q Consensus 126 ~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~-----~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~ 197 (307)
+..|..++|++....|.| -|++||+.++. ...+.|+||.++++++.|+++.+.++++++...
T Consensus 381 Ve~G~~YelViTt~~GL~----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 381 VKLGCTYEPVVTNFAGLY----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CCTTCEEEEEEECSSSCC----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred cCCCceEEEEEeecccee----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 456777788776222322 28999999883 346889999999999999999999999988754
No 79
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=93.30 E-value=0.089 Score=50.07 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred ecCCcceEEEEEeeeccccCCccccccccEEeecCeEEEEC-----CeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473 125 MYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVD-----DILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196 (307)
Q Consensus 125 ~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~~-----g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~ 196 (307)
.+..|..++|.+....|.| -|++||..++.. ..+.|+||.++++++.|+++.+.+++.++..
T Consensus 387 eve~G~~YelviTt~~GL~----------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 387 QVKIGEEYEVVITNYAGLY----------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp GCCTTCEEEEEEESTTSCS----------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred HcCCCCeEEEEEeecccee----------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 4567777888876222322 289999998841 3678999999999999999999999988865
No 80
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=65.37 E-value=3.1 Score=39.71 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=30.0
Q ss_pred cccccccccccccccccCCcccchhhHHHHHcc
Q psy8473 227 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 259 (307)
Q Consensus 227 ~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~ 259 (307)
....+.|+||.++++.+.|+++.+.+|+++|.+
T Consensus 426 ~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 426 SAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 456789999999999999999999999999874
No 81
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=58.37 E-value=3 Score=39.59 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=29.7
Q ss_pred ccccccccccccccccCCcccchhhHHHHHccc
Q psy8473 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260 (307)
Q Consensus 228 dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~ 260 (307)
...+.|+||.++++.+.|+++...+|+++|.+.
T Consensus 415 ~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred CcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 356899999999999999999999999999754
No 82
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=52.69 E-value=4.9 Score=38.14 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=28.4
Q ss_pred cccccccccccccccCCcccchhhHHHHHcc
Q psy8473 229 DILLYEGRTDSQVKIRGNRVDLSEVEAALSK 259 (307)
Q Consensus 229 g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~ 259 (307)
..+.|+||.++++.+.|.++...+|+++|.+
T Consensus 423 p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 423 PQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred cEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 4588999999999999999999999999875
No 83
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=29.59 E-value=36 Score=17.24 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHH
Q psy8473 21 FEREKAKKKKNKKK 34 (307)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (307)
||.+.+++-.|||-
T Consensus 5 Ft~selqr~qEkEr 18 (26)
T 1lbj_A 5 FTYGELQRMQEKER 18 (26)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHh
Confidence 88998887766663
Done!