RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8473
(307 letters)
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 73.7 bits (182), Expect = 9e-15
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
R Y+TGD R + L + GR D QVK+ G R+DL +E + +
Sbjct: 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGI 444
Score = 55.6 bits (135), Expect = 8e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
L + GR D QVK+ G R+DL +E + +
Sbjct: 412 LRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGI 444
Score = 37.9 bits (89), Expect = 0.003
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 103 SNDIAIVLYTSGSTGIPK 120
++ IA + ++SG+TG PK
Sbjct: 163 ADQIAYINFSSGTTGRPK 180
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 73.0 bits (180), Expect = 1e-14
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
Y TGD G + +D ILLY GR D Q+K G R++L +V L++ V
Sbjct: 380 PAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Score = 54.1 bits (131), Expect = 2e-08
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
LLY GR D Q+K G R++L +V L++ V
Sbjct: 396 LLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Score = 36.7 bits (86), Expect = 0.008
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+ +D +++TSG+TG PK
Sbjct: 143 KGDDNYYIIFTSGTTGQPK 161
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 71.9 bits (177), Expect = 3e-14
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
+MY+TGD R+ D +L+ GR D QVK+RG R++L EV + LS
Sbjct: 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPT 452
Score = 53.4 bits (129), Expect = 4e-08
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
D +L+ GR D QVK+RG R++L EV + +S
Sbjct: 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPT 452
Score = 40.3 bits (95), Expect = 6e-04
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 63 PAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPK 120
VL + + + + + A +LYTSGSTG PK
Sbjct: 141 ELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENL-------DAYLLYTSGSTGTPK 191
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 71.9 bits (177), Expect = 4e-14
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
+Y+TGD R + D + Y GR D QVKIRG+R++L E+E L + V
Sbjct: 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886
Score = 54.2 bits (131), Expect = 2e-08
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
Y GR D QVKIRG+R++L E+E L + V
Sbjct: 856 YAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
ND A ++YTSG+TG PK
Sbjct: 605 DPNDPAYIMYTSGTTGKPK 623
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 69.8 bits (172), Expect = 1e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
Y+TGD G I D + +GR D Q+K+ G R++L E+E + + V
Sbjct: 376 WAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYV 423
Score = 54.0 bits (131), Expect = 2e-08
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
+GR D Q+K+ G R++L E+E + + V
Sbjct: 393 CQGRLDFQIKLHGYRMELEEIEFHVRQSQYV 423
Score = 36.3 bits (85), Expect = 0.010
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+ ++ ++YTSGSTG PK
Sbjct: 141 KEHETFYIIYTSGSTGNPK 159
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 69.1 bits (170), Expect = 2e-13
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
R YKTGD G + + +L Y GR D Q+K+ G R++L E+E L S V
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424
Score = 53.7 bits (130), Expect = 2e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
Y GR D Q+K+ G R++L E+E L S V
Sbjct: 394 YNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424
Score = 36.7 bits (86), Expect = 0.008
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+ ++ ++YTSGSTG PK
Sbjct: 142 KGDENFYIIYTSGSTGNPK 160
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 69.1 bits (170), Expect = 3e-13
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
++YKTGD R + D + Y GR D+QVKIRG+RV+L EVE+ L K +
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 455
Score = 53.3 bits (129), Expect = 3e-08
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
Y GR D+QVKIRG+RV+L EVE+ L K +
Sbjct: 425 YLGRIDNQVKIRGHRVELEEVESILLKHMYI 455
Score = 37.5 bits (88), Expect = 0.004
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+S D+A V+YTSG+TG PK
Sbjct: 180 KSTDLAYVIYTSGTTGNPK 198
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine
proteinase, wild type, viral protein; 2.38A {Sindbis
virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 41.3 bits (96), Expect = 2e-04
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 4 NLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
L I + + P P R+K + K K KK K ++KKKK+ K K
Sbjct: 51 ALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 40.6 bits (94), Expect = 3e-04
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
P P ++++A K+ K KK K ++KKKK+ K K +R
Sbjct: 67 PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Score = 39.0 bits (90), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
P R ++KK K+ K KK K ++KKKK+ +
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 30.2 bits (67), Expect = 0.83
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ ++KK+ K+ K KK K +
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQE 89
Score = 26.7 bits (58), Expect = 9.9
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQL 76
P ++ ++K KK+ K K K+++ K + R+ E+ G + ++
Sbjct: 78 QPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIGHALAMEGKV 136
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 40.5 bits (95), Expect = 6e-04
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+ A + YTSGST P
Sbjct: 181 EYPSTAYLQYTSGSTRTPA 199
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 39.6 bits (92), Expect = 6e-04
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCEN 62
+++ K K KK +K KK +KKK K KR EN
Sbjct: 59 QKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 58/249 (23%)
Query: 45 KKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLLSASLS----HNNIPGE--SMLHADN 98
K K I+ S L + R + LS +IP S++ D
Sbjct: 348 KHVNCDKLTTIIESSLNV--------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 99 NNEQSNDIAIVLYT---------SGSTGIPKEYRRMYKTGD-----YGRIVD--DIHRCW 142
+ L+ + IP Y + + + IVD +I + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 143 SSGDRAIKYRRMY---------KTGDYGRIVDDI-LLYEGRTD---SQVKIRGNRVDLSE 189
S D Y Y K ++ + +++ D + KIR + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNA 516
Query: 190 VEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVD 249
+ L+ L ++ YK + + + R V+ IL + + + + I D
Sbjct: 517 SGSILNTLQQLKF-----YK----PYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTD 566
Query: 250 LSEVEAALS 258
L + AL
Sbjct: 567 L--LRIALM 573
Score = 27.9 bits (61), Expect = 5.5
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 35/118 (29%)
Query: 49 KKKKRRILAKSCENPAYKGRTVLSLPQ---------LRLLSASLSHNNIPGESMLHADNN 99
+ + +L K Y LP+ L +++ S+ ++ H N
Sbjct: 300 PDEVKSLLLK------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NC 352
Query: 100 NEQSNDIAI---VLYTSGSTGIPKEYRRMYKTGDYGRIVDDIH-------RCWSSGDR 147
++ + I VL P EYR+M+ H W +
Sbjct: 353 DKLTTIIESSLNVLE-------PAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIK 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 44/265 (16%), Positives = 70/265 (26%), Gaps = 113/265 (42%)
Query: 54 RILAKSCEN----PAY----KG--RTVL---------SLPQLRLLSASL--SHNNI---- 88
IL S EN P+ + + LP + + SL N+
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 89 PGESM---------LHADNNNEQSNDIAIVLYTSGSTGIPKEYRR--------------- 124
P +S+ A + +QS IP R+
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSR-------------IPFSERKLKFSNRFLPVASPFH 428
Query: 125 ---MYKTGDYGRIVDDIHR---CWSSGDRAIKYRRMYKTGDYG------------RIVDD 166
+ D I D+ + +++ D I +Y T D G RIVD
Sbjct: 429 SHLLVPASD--LINKDLVKNNVSFNAKDIQIP---VYDTFD-GSDLRVLSGSISERIVDC 482
Query: 167 ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEI-- 224
I+ V E +L + PG + +T
Sbjct: 483 II-----RL--------PVKW---ETTTQF----KATHILDFGPGGASGLGVLTHRNKDG 522
Query: 225 RGVDDIL--LYEGRTDSQVKIRGNR 247
GV I+ + D G +
Sbjct: 523 TGVRVIVAGTLDINPDDDY---GFK 544
Score = 37.7 bits (87), Expect = 0.005
Identities = 40/252 (15%), Positives = 75/252 (29%), Gaps = 98/252 (38%)
Query: 90 GESMLHADNNNEQSNDIAIVLYTSGSTG--IPKEYRRM-YKTGDYGR-----IVDDIHRC 141
G S+L NN + + ++ G G I + Y M ++T G+ I +I+
Sbjct: 1658 GFSILDIVINNPVN----LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 142 WSS----GDR-----------AI------KYRRMYKTGD--------------Y------ 160
+S ++ A+ + + G Y
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 161 -GRI-VDDIL-LYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK-----PGE 212
+ ++ ++ + V RG + D+L Y PG
Sbjct: 1774 ADVMSIESLVEV--------VFYRGM---------TMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 213 V------DQVSEVTSEEIRGVDDILL----Y--EGRTDSQVKIRGNRVDLSEVEAALS-- 258
V + + V E + L+ Y E Q G+ L V L+
Sbjct: 1817 VAASFSQEALQYVV-ERVGKRTGWLVEIVNYNVEN---QQYVAAGDLRALDTVTNVLNFI 1872
Query: 259 KISEVD--KLSV 268
K+ ++D +L
Sbjct: 1873 KLQKIDIIELQK 1884
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 103 SNDIAIVLYTSGSTGIPK 120
+DIA LY+SGSTG PK
Sbjct: 182 CDDIAFWLYSSGSTGKPK 199
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 38.4 bits (90), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
NDIA + YTSGST P+
Sbjct: 174 VPNDIAYLQYTSGSTRFPR 192
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 155 YKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
TGD G ++D L GR + IRG + ++E + E+
Sbjct: 441 LDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 486
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 37.3 bits (87), Expect = 0.005
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+SNDIA + YTSGST PK
Sbjct: 165 KSNDIAFLQYTSGSTMHPK 183
Score = 29.6 bits (67), Expect = 1.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 157 TGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
TGD G + ++ L GR + I G ++E +L
Sbjct: 440 TGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLH 483
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 37.3 bits (87), Expect = 0.005
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 26/112 (23%)
Query: 126 YKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRV 185
Y+T D RI+ C + R+ RI GR+D I+G +
Sbjct: 301 YRTRDLTRILPGKCPC------GRTHLRI------DRIK-------GRSDDMFIIKGVNI 341
Query: 186 DLSEVEAALSKLSEVDK-LSVLCYKPGEVDQ------VSEVTSEEIRGVDDI 230
+VE L + E+ + D+ +S+++++ ++ I
Sbjct: 342 FPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKI 393
Score = 31.9 bits (73), Expect = 0.24
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 235 GRTDSQVKIRGNRVDLSEVEAALSKISEVDK-LSVLCYKPGEVDQI 279
GR+D I+G + +VE L + E+ + D++
Sbjct: 328 GRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 37.3 bits (87), Expect = 0.005
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 126 YKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRV 185
Y+T D ++ R RR+ +I GR+D + +RG V
Sbjct: 308 YRTRDLTALLPPTARA---------MRRL------AKIT-------GRSDDMLIVRGVNV 345
Query: 186 DLSEVEAALSKLSEV-DKLSVLCYKPGEVDQVS---EVTSEEIRGVDDILLYEGRTDSQV 241
S++E + L + + + + G +D++ E+ SE V D + Q
Sbjct: 346 FPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQH 405
Query: 242 KIR 244
+I+
Sbjct: 406 RIK 408
Score = 32.7 bits (75), Expect = 0.16
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 235 GRTDSQVKIRGNRVDLSEVEAALSKISEV-DKLSVLCYKPGEVDQIW---EAPSSAGSTD 290
GR+D + +RG V S++E + + + + + + G +D++ E S A ++
Sbjct: 332 GRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV 391
Query: 291 SSFIVKSREDRAEEEL 306
+ + + +
Sbjct: 392 TDGERAALARELQHRI 407
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 34.8 bits (79), Expect = 0.010
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
+P P + A KK +KK K +KK KK+KK +K
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 34.0 bits (77), Expect = 0.017
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E AK KK KK K +KK KK+K+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
Score = 32.1 bits (72), Expect = 0.084
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
KK KK K +KK KK+KK R
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSR 34
Score = 31.7 bits (71), Expect = 0.11
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E K+ K KK K +KK KK+KK R+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 31.3 bits (70), Expect = 0.13
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
P + A K KK K +KK KK+KK ++
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.4 bits (65), Expect = 0.74
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVL 71
+ KK KK K +KK ++ E+ + VL
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVL 46
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 36.4 bits (85), Expect = 0.010
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 105 DIAIVLYTSGSTGIPK 120
D+A +LYTSG+TG K
Sbjct: 156 DLAAILYTSGTTGRSK 171
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 36.4 bits (85), Expect = 0.010
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+D ++YTSG+TG PK
Sbjct: 170 DDNLFIMYTSGTTGHPK 186
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 36.4 bits (85), Expect = 0.011
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 104 NDIAIVLYTSGSTGIPK 120
D ++++T+ G P+
Sbjct: 160 ADGFVIIHTAAVGGRPR 176
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 36.4 bits (85), Expect = 0.011
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
++++A + GSTG PK
Sbjct: 189 PADEVAFFQLSGGSTGTPK 207
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 36.5 bits (85), Expect = 0.011
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+++A + G+TG PK
Sbjct: 184 DEVAYFQLSGGTTGTPK 200
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 36.1 bits (84), Expect = 0.011
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 105 DIAIVLYTSGSTGIPK 120
D A+V+YTSG+TG PK
Sbjct: 156 DPALVVYTSGTTGPPK 171
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 36.0 bits (84), Expect = 0.012
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+DIA +++TSG+TG K
Sbjct: 163 DDIASIMFTSGTTGPQK 179
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 36.0 bits (84), Expect = 0.014
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 103 SNDIAIVLYTSGSTGIPK 120
+ DI +V ++SG+ G PK
Sbjct: 224 NEDICLVYFSSGTAGFPK 241
Score = 28.3 bits (64), Expect = 3.3
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 129 GDYGRIVDDIHRCWSSGDRAI------KYRR-----MYKTGDYGRIVDD-ILLYEGRTDS 176
G+ G IV + G + Y TGD + +D L + GR D
Sbjct: 417 GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADD 476
Query: 177 QVKIRGNRVDLSEVEAAL 194
+K G +V EVE+AL
Sbjct: 477 IIKTSGYKVGPFEVESAL 494
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 35.7 bits (83), Expect = 0.018
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 103 SNDIAIVLYTSGSTGIPK 120
S + + + +TSG++G+PK
Sbjct: 205 SQEASAIYFTSGTSGLPK 222
Score = 30.3 bits (69), Expect = 0.97
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 155 YKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
+ GD G +D + GR D + G R+ SEVE AL
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL 475
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 35.6 bits (83), Expect = 0.018
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+D+A + + GSTG+ K
Sbjct: 182 SDVAFLQLSGGSTGLSK 198
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 33.9 bits (77), Expect = 0.018
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K KK K +K K KKKK+KR+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 33.5 bits (76), Expect = 0.028
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K K KK K +K K KKKKR+
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 32.4 bits (73), Expect = 0.062
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K K KK K +K K KKKK+K++
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.8 bits (69), Expect = 0.22
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
P KA KK K +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 29.7 bits (66), Expect = 0.58
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
P + KK K +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.9 bits (64), Expect = 0.90
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKK 48
P + AKK +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 3.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVL 71
K K KK K +K K ++ K E+ A TVL
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTVL 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 35.4 bits (82), Expect = 0.020
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 22/75 (29%)
Query: 126 YKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRV 185
Y+T D R++ R RRM +I GR+D + +RG V
Sbjct: 306 YRTRDLTRLLPGTARTM---------RRM------EKIT-------GRSDDMMIVRGVNV 343
Query: 186 DLSEVEAALSKLSEV 200
+++E L K +
Sbjct: 344 FPTQIEEQLLKQRAL 358
Score = 32.7 bits (75), Expect = 0.14
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 235 GRTDSQVKIRGNRVDLSEVEAALSKISEV-DKLSVLCYKPGEVDQI 279
GR+D + +RG V +++E L K + ++ K G +D +
Sbjct: 330 GRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL 375
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 35.2 bits (82), Expect = 0.022
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 105 DIAIVLYTSGSTGIPK 120
A + YTSG+TG+PK
Sbjct: 154 QPAFIFYTSGTTGLPK 169
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 34.1 bits (78), Expect = 0.022
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
AP K K ++ K K K K+K KK R
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIR 37
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 34.7 bits (79), Expect = 0.025
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 9 EHHFDKV---IIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
E + I P + KK ++ + KK ++ K K+++ R+ AK
Sbjct: 237 EDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAK 289
Score = 28.5 bits (63), Expect = 2.5
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + + + K +KK K++ + KK
Sbjct: 236 LEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKK 271
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 34.9 bits (81), Expect = 0.027
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
D+A++ YT G+TG+PK
Sbjct: 180 EDVALIPYTGGTTGMPK 196
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 34.4 bits (78), Expect = 0.028
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
E + K +++K +K K +++K + K+++ +
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQ 46
Score = 31.7 bits (71), Expect = 0.22
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
EK +K K +++K + K++K + K ++ A+
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEY 52
Score = 31.7 bits (71), Expect = 0.26
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E+ + K + +K + K++K + K +K
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQK 47
Score = 29.0 bits (64), Expect = 1.8
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+P +++ A+ +K +K K +++K + K++K + A+
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQK 47
Score = 28.6 bits (63), Expect = 2.2
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
R+ +++ + K++K + K +K A +
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKK 58
Score = 27.4 bits (60), Expect = 5.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E+ KA + K++K + K +K + + +
Sbjct: 25 EQRKASSAQMKQRKAEWISKAQKYAAEYEAAEK 57
Score = 27.1 bits (59), Expect = 6.7
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ + ++K + + K++K + K +K +
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAEYE 53
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 34.3 bits (79), Expect = 0.035
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+A K+ K+++ ++K ++ K K+K +K R+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 337
Score = 33.6 bits (77), Expect = 0.071
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
E +K ++ + K ++ K K+K +K++ +K+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.18
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
+E K+++ ++K ++ K K+K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.22
Identities = 6/32 (18%), Positives = 22/32 (68%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ +K++ ++K ++ K K+K +K++ +++
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.24
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
K+N+K+++ ++K ++ K K+K ++ L K
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 31.6 bits (72), Expect = 0.31
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + +++ +K ++ K K+K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.65
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
F + + +K ++ ++K ++ K K+K +K++
Sbjct: 305 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 34.1 bits (78), Expect = 0.043
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 12 FDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKK 48
F + +R++ + K + KKK K K K+ K
Sbjct: 343 FKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.19
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
AK+K+ + K KKK K K K+ +
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.20
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ K+K + K KKK K K K+ +
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.0 bits (70), Expect = 0.41
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 12 FDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F KV + K + K KKK K K K+ K
Sbjct: 342 FFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.1 bits (65), Expect = 2.0
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K K+ + K KKK K K +R
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
Score = 26.8 bits (59), Expect = 8.9
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 3 INLTISEHHFDKVIIPAPFER-EKAKKK----------KNKKKKKKKKKKKKKKKKKKKK 51
I E F + I + +R K+++ K K+K+ + K KK
Sbjct: 306 IKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKK 365
Query: 52 KRRILAKS 59
K + A
Sbjct: 366 KAKTGAAG 373
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 34.1 bits (79), Expect = 0.045
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
P+ +E K + KK K K K KK K K
Sbjct: 443 PYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 27.6 bits (62), Expect = 6.1
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 13 DKVIIPA---PF-----EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCEN 62
D ++IP + E K+ K KK K K K K+ +
Sbjct: 423 DGLVIPEVLRKYIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 34.1 bits (77), Expect = 0.049
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRT 69
+ + K KK ++KK KK KK KK A + + PA +
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
Score = 32.9 bits (74), Expect = 0.11
Identities = 13/53 (24%), Positives = 17/53 (32%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
V P ++ K KK KK KK KK ++ K K
Sbjct: 366 GVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 32.2 bits (72), Expect = 0.20
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
++ +P R K KK KK KK KK KK
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 31.0 bits (69), Expect = 0.51
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPA 64
++ KK K KK KK KK + + PA
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 30.2 bits (67), Expect = 0.91
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPA 64
++ KK KK KK KK KK + E
Sbjct: 377 GKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 29.5 bits (65), Expect = 1.7
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
K + ++ KK KK KK +KK ++++ A
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPAA 421
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.7 bits (77), Expect = 0.062
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
ER++ + + KKKKKKKKK+ K
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 33.0 bits (75), Expect = 0.11
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
++E+ + ++ KKKKKKKKK+
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 32.2 bits (73), Expect = 0.19
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E ++ + KKKKKKKKK+
Sbjct: 77 EDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 32.2 bits (73), Expect = 0.20
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSC 60
+K + + ++ KKKKKKKKKR ++
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 31.0 bits (70), Expect = 0.43
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENP 63
E ++ ++ + KKKKKKKK+R + P
Sbjct: 75 ALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPP 116
Score = 31.0 bits (70), Expect = 0.54
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKK 46
DK + + KKKKKKKKK+ K
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 28.7 bits (64), Expect = 2.5
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENP 63
D+V + K++ + KKKKKKK++ K +P
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 31.9 bits (73), Expect = 0.067
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 16 IIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
I+ K+ +K++ KK K +
Sbjct: 78 ILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.8 bits (70), Expect = 0.17
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
++ + + K+ +K++ KK K
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKG 108
Score = 30.0 bits (68), Expect = 0.31
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
E + K+ +K++ KK K +
Sbjct: 82 VVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 1.2
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.7 bits (62), Expect = 2.0
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K+ + + K+ +K++ KK +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 25.8 bits (57), Expect = 8.9
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
K+ + + K+ +K++ K+
Sbjct: 73 LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKK 105
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 33.7 bits (78), Expect = 0.070
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+D+ + Y+SG+TG+PK
Sbjct: 178 DDVVALPYSSGTTGLPK 194
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 33.6 bits (76), Expect = 0.071
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
E + K++ K K K KK K ++ LAK
Sbjct: 272 LSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 32.9 bits (74), Expect = 0.11
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ P E ++ K N K K KK K +K
Sbjct: 269 KLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Score = 32.5 bits (73), Expect = 0.17
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + K K KK K +K K
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 32.1 bits (72), Expect = 0.20
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
A + K K K KK K +K K K
Sbjct: 279 AKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 31.3 bits (70), Expect = 0.33
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
E K+ K KK K +K K
Sbjct: 278 EAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 31.0 bits (69), Expect = 0.44
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
F + K K K +K K K K
Sbjct: 286 FNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 30.2 bits (67), Expect = 0.82
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ K KK K +K K K + I
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 29.8 bits (66), Expect = 1.2
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 9/55 (16%)
Query: 8 SEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKK---------KKKKKKKKR 53
E D + K K +K K K K KK +
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 27.5 bits (60), Expect = 5.8
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 9 EHHFDKVIIPAPFEREKAKKKK-------NKKKKKKKKKKKKKKKKKKKKKRR 54
PA +KK K K+ K K K KK K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTA 302
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 33.0 bits (75), Expect = 0.073
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
E+E+ K ++ +KKK +KK KK+K R
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 31.8 bits (72), Expect = 0.17
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+K++ K +++ +KKK +KK KK++++A+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 26.8 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKK 44
+ I+P P E KKK ++KK KK+K ++
Sbjct: 154 EQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 33.7 bits (78), Expect = 0.078
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+A+++ +SGSTG+PK
Sbjct: 192 EQVALIMNSSGSTGLPK 208
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 33.5 bits (76), Expect = 0.078
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
RE +K KK+ KKK+ + K +KK R+ K
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.085
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
K K +K ++ ++ +K K+KR I+ +
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNA 49
Score = 32.1 bits (72), Expect = 0.17
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
++ + + +K K+K+ ++
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAA 50
Score = 31.3 bits (70), Expect = 0.27
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
+ +K + ++ +K K+K+ R A
Sbjct: 16 SKAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
Score = 31.3 bits (70), Expect = 0.30
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
++K ++ ++ +K K+K+ ++ +
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEY 55
Score = 29.0 bits (64), Expect = 1.7
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
E+ ++ +K K+K+ ++ ++
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERN 61
Score = 28.6 bits (63), Expect = 2.5
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+K++ P ++ ++K ++ ++ +K K+K+ +
Sbjct: 4 EKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
Score = 27.9 bits (61), Expect = 3.9
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
A+K NK+K+ ++ +K+ + R
Sbjct: 28 AERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 27.5 bits (60), Expect = 5.6
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E+ A++ K K+K+ ++ +K+
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYE 56
Score = 27.5 bits (60), Expect = 6.0
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLL 79
E+A +K K+K+ ++ +K+ + + A + Q +L+
Sbjct: 28 AERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLV 84
Score = 26.7 bits (58), Expect = 8.5
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ +K K+K+ ++ +K+ +
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNI 62
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 33.4 bits (77), Expect = 0.086
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
IA+++ +SGSTG+PK
Sbjct: 190 KTIALIMNSSGSTGLPK 206
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 31.5 bits (71), Expect = 0.087
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K K K K K+KKKK K K++
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 31.1 bits (70), Expect = 0.12
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ K K K+KKKK K K+K+K
Sbjct: 2 APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVN 38
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 33.1 bits (75), Expect = 0.089
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 9 EHHFDKV--IIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
E F KV I ER K+ KK +K K+ KK K ++K R
Sbjct: 244 EKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDR 290
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ F + A+ +KN ++ K KK K K+ KK
Sbjct: 243 VEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPT 280
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.099
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 22 EREKAKKKKNKKKKKKKK----KKKKKKKKKKKKKRRILAK 58
K +++ ++K KK +++ ++ +K K RI K
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 29.7 bits (66), Expect = 0.93
Identities = 7/54 (12%), Positives = 23/54 (42%)
Query: 15 VIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
+ +E +K +++++K+ ++ K +++ R AK + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Score = 28.2 bits (62), Expect = 2.5
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
REKAKK + +++ ++ +K K + + +
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 32.9 bits (74), Expect = 0.10
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCEN 62
K+++ + +KK+K +K K + +++ E
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 31.3 bits (70), Expect = 0.31
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
E +K +K +K K + K + + +
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEY 57
Score = 30.2 bits (67), Expect = 0.79
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
+ K+K +K K + K + ++ A+ E
Sbjct: 25 AAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKE 63
Score = 29.0 bits (64), Expect = 1.7
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
RE+ + K+K +K K + K + A
Sbjct: 20 REEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAG 55
Score = 27.5 bits (60), Expect = 5.7
Identities = 6/57 (10%), Positives = 19/57 (33%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLL 79
++ A +K + K + ++ + + + + A P+ + L
Sbjct: 30 QKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPL 86
Score = 27.5 bits (60), Expect = 5.9
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
E+++ + K + K + ++ +
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQ 60
Score = 26.7 bits (58), Expect = 8.6
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+K K K K + K + ++ +
Sbjct: 26 AEKKQKVAAEKIKAAENTKVIYARAEQYAGEYE 58
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 33.5 bits (77), Expect = 0.10
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+D+ + Y+SG+TG+PK
Sbjct: 225 DDVVALPYSSGTTGLPK 241
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 32.9 bits (76), Expect = 0.14
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 109 VLYTSGSTGIPK 120
+LYTSGSTG PK
Sbjct: 267 LLYTSGSTGAPK 278
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 32.5 bits (73), Expect = 0.16
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
+A K K + K +K K KK + K+ E K R
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 31.3 bits (70), Expect = 0.36
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKG 67
+ ++ K +K K KK + + ++ +
Sbjct: 350 ASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Score = 30.9 bits (69), Expect = 0.57
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
+ K + K K++ K +K K KK + N A +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANE 385
Score = 30.9 bits (69), Expect = 0.57
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
E+ K + +K K++ K +K K KK + +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAA 379
Score = 30.2 bits (67), Expect = 0.79
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+E+AKK K K++ K +K K K+ A
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAW 376
Score = 30.2 bits (67), Expect = 0.97
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
+ K + K KK + K + I E+ +
Sbjct: 355 RQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Score = 29.8 bits (66), Expect = 1.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E KAK++ K +K K KK +
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFN 381
Score = 29.8 bits (66), Expect = 1.2
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
K K++ KK + K K++ K +K + K
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Score = 29.8 bits (66), Expect = 1.3
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
++ A+ K K++ K +K K KK + I A +
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFN 381
Score = 28.6 bits (63), Expect = 2.7
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQL 76
K+ KK + K K++ K +K K + +
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAI 388
Score = 28.6 bits (63), Expect = 3.0
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
K + KK + K K++ K +K K + +++ K
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKAN 384
Score = 27.5 bits (60), Expect = 6.9
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
AK K + KK + K K++ K ++
Sbjct: 335 PAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTH 369
Score = 27.1 bits (59), Expect = 8.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
K++ K + K K++ K +K + S
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGS 373
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 32.6 bits (74), Expect = 0.16
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
+ ++ +N+ + K K+ +K ++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 31.1 bits (70), Expect = 0.40
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
R + + + K K+ +K I+
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 30.7 bits (69), Expect = 0.62
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
++ + + + K K+ +K I+
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 29.9 bits (67), Expect = 1.0
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
+E + + + K K+ +K IL
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIIILC 42
Score = 29.5 bits (66), Expect = 1.3
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ ++ + + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.4 bits (63), Expect = 3.3
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
++ + + ++ K K+ +K
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 3.7
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKK 46
P R+ + + K K+ +K
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 32.5 bits (75), Expect = 0.17
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 109 VLYTSGSTGIPK 120
+LYTSGSTG PK
Sbjct: 261 ILYTSGSTGKPK 272
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 30.4 bits (68), Expect = 0.18
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSC 60
K+ + K +K K K + + KK I K C
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVC 51
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.8 bits (71), Expect = 0.20
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
KK++N + K K+ +KK K +K RR
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARR 69
Score = 31.4 bits (70), Expect = 0.35
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+ K K+ +KK K +K ++K +K + +
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEY 83
Score = 31.0 bits (69), Expect = 0.42
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
K++ + K K+ +KK K +K +R+++ + +
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAK 77
Score = 30.6 bits (68), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
F K K+ + K K +K ++K +K K
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKH 78
Score = 30.2 bits (67), Expect = 0.76
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
R A+ K + +KK K +K ++K ++
Sbjct: 45 RNFAELKVKRLRKKFALKTLRKARRKLIYEK 75
Score = 30.2 bits (67), Expect = 0.80
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
R + K K+ +KK K +K ++K +
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEK 75
Score = 29.8 bits (66), Expect = 0.95
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
+ K +KK K +K ++K +K K +
Sbjct: 51 KVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRT 89
Score = 29.1 bits (64), Expect = 2.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
K + K K+ +KK K +K ++K
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYE 74
Score = 28.3 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
P E KKK+ + K K+ +KK K +K R
Sbjct: 34 PAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR 68
Score = 28.3 bits (62), Expect = 2.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + + K+ +KK K +K ++K
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLI 72
Score = 27.5 bits (60), Expect = 5.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ A K K ++K +K K K+ ++ R
Sbjct: 56 RKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.9 bits (72), Expect = 0.21
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 9 EHHFDKV---IIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
E + KV I P K KK+ K+ KK +++K ++ +
Sbjct: 237 ESLYKKVHAAIRADP-----TMAKSTKKEPATHKRYNLKKLTYEQRKASLVER 284
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 31.9 bits (73), Expect = 0.21
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKK----KKKKKKKKKKKKKRRILAKSCENPA 64
+ +I+P P ++A+ + + + + ++ RR L ++ E PA
Sbjct: 182 EGLIVPPPTTEDQARARMESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAEKPA 237
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 30.4 bits (68), Expect = 0.22
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K + K K KK KKK KK +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 30.0 bits (67), Expect = 0.30
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
P ++ K KK KKK KK K +
Sbjct: 2 PPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.2 bits (65), Expect = 0.60
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
K++ +K K KK KKK K+ + +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.4 bits (63), Expect = 0.99
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
P + AK KK KKK KK K + + ++
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVI 41
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Length = 183
Score = 31.4 bits (71), Expect = 0.22
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 143 SSGDRAIKYR-RMYKTGDYGR----IVDDILLYEGRTDSQVKIRGNRV----DLSEVEAA 193
G RA ++ ++ K + + +LL +T S++ R NR+ D +V
Sbjct: 88 VMGSRADRWEHKVDKGLELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQ 147
Query: 194 LSKLSEVDKLSVLCYKPGE 212
L +L +++ + G+
Sbjct: 148 LERLIARGLATLVPRQSGQ 166
Score = 27.2 bits (60), Expect = 5.2
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 231 LLYEG-RTDSQVKIRGNRV----DLSEVEAALSKISEVDKLSVLCYKPGEVDQIW 280
LL G +T S++ R NR+ D +V L ++ +++ + G+ + +
Sbjct: 117 LLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLATLVPRQSGQREDRY 171
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 32.2 bits (73), Expect = 0.22
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 134 IVDDIHRCWSS--GDRAIKYRR 153
+ + +H ++S DRAI YR
Sbjct: 154 VKEAMHHVFASLYNDRAISYRV 175
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.0 bits (73), Expect = 0.24
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
PF + +++ KK+KK+ + KKK +
Sbjct: 469 PFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVT 501
Score = 32.0 bits (73), Expect = 0.26
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCEN 62
PAP E+E +KK+K + + KKK + + + + + + E+
Sbjct: 473 PAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEH 517
Score = 30.5 bits (69), Expect = 0.74
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ +IP ++ K+KK+ + KKK + + R+
Sbjct: 465 QELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRL 506
Score = 29.3 bits (66), Expect = 1.9
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLLS 80
F + K KN K +K KKK+ + S ++ L + Q++ +
Sbjct: 48 FRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVR 107
Query: 81 ASLS 84
+
Sbjct: 108 LLID 111
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 31.6 bits (72), Expect = 0.25
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
+ + K KKKK KR +L
Sbjct: 4 SHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKRILLK 39
Score = 30.8 bits (70), Expect = 0.46
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ + + K KKKK +RIL K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKRILLK 39
Score = 27.3 bits (61), Expect = 5.3
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKK 48
+ + K KKKK K+
Sbjct: 5 HHHHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 30.7 bits (70), Expect = 0.25
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
AK ++ + +K +K + ++
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPKGVI 32
Score = 30.7 bits (70), Expect = 0.29
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKK 51
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.4 bits (71), Expect = 0.37
Identities = 7/44 (15%), Positives = 23/44 (52%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKG 67
+AK++ +KKK++++++ + + + K++R +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENS 432
Score = 29.5 bits (66), Expect = 1.3
Identities = 5/33 (15%), Positives = 23/33 (69%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
R+K ++++ + + + + K+++++++K +K +
Sbjct: 398 MRKKKEEEERRARMEAQLKEQRERERKMRKAKE 430
Score = 29.1 bits (65), Expect = 2.0
Identities = 6/34 (17%), Positives = 21/34 (61%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K + + +KKK++++++ + + + K+++ R
Sbjct: 388 VSEAKQENENMRKKKEEEERRARMEAQLKEQRER 421
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 30.3 bits (68), Expect = 0.45
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
E+E+A K +KK + +++ + +K+
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 29.1 bits (65), Expect = 1.4
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K++ K +KK + +++ + +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQ 179
Score = 28.8 bits (64), Expect = 1.7
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
K++ K +KK + +++ + ++ +A
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 28.0 bits (62), Expect = 3.0
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
EK + +KK + +++ + +KR
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 30.2 bits (68), Expect = 0.46
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K K + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTY 32
Score = 29.4 bits (66), Expect = 0.70
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
K+ K + K K K KK K +
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKT 31
Score = 27.5 bits (61), Expect = 3.8
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
++ K + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTY 32
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 30.3 bits (68), Expect = 0.50
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ + + KK+ KK + + LA
Sbjct: 161 KVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 28.8 bits (64), Expect = 2.0
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ K + KK+ KK +
Sbjct: 158 AKRKVSSAEYYAKKRAFTKKVASANATAAES 188
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 30.1 bits (66), Expect = 0.52
Identities = 4/40 (10%), Positives = 10/40 (25%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
D++ K+ N+ K + +
Sbjct: 97 DRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.4 bits (59), Expect = 3.7
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKR 53
KK+ + K + R
Sbjct: 110 KKRLANEAGSTGSAPATGGVXKPHRYR 136
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 30.1 bits (67), Expect = 0.54
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSC 60
A+K + ++ + + KK+ +
Sbjct: 12 ARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGS 46
Score = 28.9 bits (64), Expect = 1.1
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQ 75
K + +++ + + KK+ K S + +
Sbjct: 14 KLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESK 62
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 30.2 bits (69), Expect = 0.58
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
+RE + + + +K+ + K+ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 7.4
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K++ + + + + +K+ + K+
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELS 190
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 30.6 bits (68), Expect = 0.64
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
A+ + K +K+K K+ K ++ K + K+
Sbjct: 343 MATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKA 380
Score = 29.0 bits (64), Expect = 1.9
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILA 57
+ + + K +K+K K+ K ++ ++ A
Sbjct: 340 ARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKA 376
Score = 28.7 bits (63), Expect = 2.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
R+ A + + K +K+K K+ K ++
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEE 370
Score = 28.3 bits (62), Expect = 3.4
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKG 67
E + K +K K K+ K ++ K K + + Y
Sbjct: 348 EAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAE 393
Score = 27.5 bits (60), Expect = 7.1
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
+ + + K +K+K K+ ++ + G+
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGK 379
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.8 bits (66), Expect = 0.67
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
PA +++ + + KK KKK K K K K
Sbjct: 5 PAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.4 bits (65), Expect = 0.76
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
P +K K+ K + KK KKK K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 29.0 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++K K+ K + KK KKK K K K K
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVN 40
Score = 27.8 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
++ A +K K+ K + KK KKK K +
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKA 35
Score = 26.3 bits (57), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
K+ +KK K+ K + KK KK+
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKK 29
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.5 bits (64), Expect = 0.75
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 33 KKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
K K KK+ +++ +K K + + Y+
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYR 35
Score = 25.8 bits (57), Expect = 7.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
KN K KK+ +++ +K K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEF 29
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.9 bits (67), Expect = 0.82
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F+ +K +KK+ ++KK+ + +++K ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 29.4 bits (66), Expect = 0.93
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKK 49
A KK +K+ +
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANE 25
Score = 28.6 bits (64), Expect = 1.6
Identities = 3/24 (12%), Positives = 5/24 (20%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRI 55
KK +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANEN 26
Score = 27.5 bits (61), Expect = 3.7
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKK 50
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.7 bits (59), Expect = 6.8
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKK 52
K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.7 bits (59), Expect = 7.6
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 31 NKKKKKKKKKKKKKKKKKKKKKR 53
KK +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 29.4 bits (65), Expect = 0.94
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+KA+ +K ++ K+KK +KK+ +K + K+
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKA 138
Score = 29.0 bits (64), Expect = 1.2
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTV 70
E EKA ++ +KK +KK+ +K + K + +
Sbjct: 106 EAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 27.8 bits (61), Expect = 2.7
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
++ +K ++ K+KK +KK+ +K + + + + + K
Sbjct: 100 ASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKK 146
Score = 27.8 bits (61), Expect = 3.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
KK + +K ++ K+KK +KK+ R++ K
Sbjct: 98 LDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKD 135
Score = 27.1 bits (59), Expect = 5.2
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
R+ K + +K ++ K+KK +K+R K
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Score = 27.1 bits (59), Expect = 5.5
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
K KK + +KK+ +K + K K KK K +
Sbjct: 113 ELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 27.1 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
E+ ++KN KK + +K ++ K+KK + K
Sbjct: 90 EEINRRKNLDASHKKAEAEKAVRELKQKKANDIEK 124
Score = 26.3 bits (57), Expect = 9.4
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRT 69
K + + ++ K+KK +KK+ +K + A +T
Sbjct: 100 ASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 29.3 bits (65), Expect = 0.96
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E A ++ ++ K++ KK K +KK KK +
Sbjct: 102 EVRDAAREAALREIKERIKKTKDEKKAKKAE 132
Score = 28.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+E+ KK K++KK KK + K +K + K + AK
Sbjct: 116 KERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 28.1 bits (62), Expect = 2.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTV 70
RE A ++ ++ KK K +KK KK + K ++ KG +
Sbjct: 108 REAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKI 155
Score = 28.1 bits (62), Expect = 2.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
R+ A++ ++ K++ KK K +KK KK + +
Sbjct: 104 RDAAREAALREIKERIKKTKDEKKAKKAEVAK 135
Score = 27.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
E+ + + + ++ K++ KK K +KK K+ +AKS
Sbjct: 99 EKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKS 136
Score = 26.9 bits (59), Expect = 6.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
RE ++ K K +KK KK + K +K + K + + P G
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGG 158
Score = 26.6 bits (58), Expect = 8.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ K++ KK K +KK KK + K +K + + A
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGAT 146
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E KA++++ + K+ KK K+ KK
Sbjct: 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAA 129
Score = 28.9 bits (64), Expect = 1.4
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKG 67
P R+ +++ + K+ KK K+ KK + + + K
Sbjct: 98 PEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPA 64
+RE+A + + KK K+ KK K + + P
Sbjct: 104 QREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPV 146
Score = 27.3 bits (60), Expect = 4.3
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 9 EHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ I A E +KAK+ K K K K+K K
Sbjct: 101 RKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVK 144
Score = 26.9 bits (59), Expect = 5.8
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
++ +K +++ + K+ KK K+ KK AK+
Sbjct: 95 NQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKA 132
Score = 26.9 bits (59), Expect = 6.3
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
K KK + KK K K K++ + P G+
Sbjct: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
Score = 26.6 bits (58), Expect = 7.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+K + +K ++++ + K+ KK K+ KK + A
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAA 130
Score = 26.2 bits (57), Expect = 9.8
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ K + K ++++ + K+ KK K+ ++
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKT 125
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E KA +++ K K+KKK +K +K +K K
Sbjct: 99 EVRKANREEKLKANKEKKKAEKAARKAEKAK 129
Score = 28.9 bits (64), Expect = 1.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+ + +K ++K K K+KKK +K +K ++ A +
Sbjct: 96 LKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGT 133
Score = 28.9 bits (64), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
RE+ K +KKK +K +K +K K + +K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSK 140
Score = 28.5 bits (63), Expect = 1.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
EKA +K K K + K K++ K +++ A S
Sbjct: 118 AEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATS 154
Score = 28.2 bits (62), Expect = 2.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKG 67
R+ +++K K K+KKK +K +K +K K + KG
Sbjct: 101 RKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
Score = 27.8 bits (61), Expect = 3.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+ ++ K K K+KKK +K +K +K + +S
Sbjct: 98 PEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQS 135
Score = 27.4 bits (60), Expect = 4.1
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
+ +KKK +K +K +K K + K ++ + + A R
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR 155
Score = 26.6 bits (58), Expect = 7.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
I + +K N+++K K K+KKK +K +K + +
Sbjct: 90 IKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSA 131
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 29.3 bits (65), Expect = 1.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKKR 53
KNK+ K KK +KK+ +K
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 29.5 bits (67), Expect = 1.5
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 29/111 (26%)
Query: 143 SSGDRAIKYRRMYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK----- 196
GD + + TG +G R D Y G + L E+ AL
Sbjct: 92 EDGDVIL----IGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV 147
Query: 197 ------------LSEVDKLSVLCYKPGE---VDQVSEVTSEEIR----GVD 228
L ++ + LC++ VD V+ + + +D
Sbjct: 148 LFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEID 198
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.7 bits (66), Expect = 1.5
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F+ + +K+ K++K K K++ +K K+
Sbjct: 135 FKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 28.6 bits (63), Expect = 3.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 16 IIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ A + + AK K K KK + KKK ++ L K
Sbjct: 484 LADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Score = 28.2 bits (62), Expect = 4.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKK 51
K KNK K KK + KKKK KK+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
Score = 27.0 bits (59), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKK 50
K K K KK + KKKK KK+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 28.7 bits (64), Expect = 1.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
R +AK +KK K+ +KK+ K + LA+
Sbjct: 160 RARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 29.2 bits (66), Expect = 1.7
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 27/123 (21%)
Query: 159 DYGR-------IVDDILLYEGRTDSQV--KIRGNRVDLSE------VEAALSKLSEVDK- 202
YG VDD+L G D K + DL + V AAL+ +
Sbjct: 211 KYGYHLGLAFQAVDDLLGIWG--DPDATGKQTWS--DLRQRKKSLPVVAALAAGGAASER 266
Query: 203 LSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEG-RTDSQVKIRGNRVDLSEVEAALSKIS 261
L + + + + EE ++ G R + + R + A+ +
Sbjct: 267 LGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEAR------RQHTIAIEALD 320
Query: 262 EVD 264
VD
Sbjct: 321 AVD 323
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
R K+ K K K+ K K +KK +
Sbjct: 102 RRSFKELKRKIKRTSGKAITKLLSEKKGDTWASV 135
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLP 74
+E +K +K ++ K+ K+K K+ A + KG T S+
Sbjct: 83 YEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQ 136
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 29.2 bits (65), Expect = 2.0
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
++ KK K++KK K+K+ + +
Sbjct: 111 HLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 28.3 bits (64), Expect = 2.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKK 48
+++K + K N+ + K +
Sbjct: 158 QVDKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.5 bits (62), Expect = 4.0
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKR 53
KKK + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED
storage protein, allergen; 2.40A {Prunus dulcis} PDB:
3ehk_A
Length = 531
Score = 29.1 bits (64), Expect = 2.1
Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLS---LPQLRL 78
+ ++ ++++ ++ ++ + K+ +P + L+ LP LR
Sbjct: 332 QLQQERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRF 391
Query: 79 LSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSG 114
L S + + + N ++ + V+ +
Sbjct: 392 LRLSAERGFFYRNGIY-SPHWNVNAHSVVYVIRGNA 426
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENP 63
++ + F K + K K +++ + + + R+ + + E P
Sbjct: 17 QLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKKVEGTPERP 66
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 27.8 bits (62), Expect = 2.2
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 4 NLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
N + +I E++ + + + K+++ K +K K R
Sbjct: 83 NREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRG 133
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.2 bits (65), Expect = 2.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 9 EHHFDKVIIPAP---FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
HH ++P F+RE+ + NK +K + K K KK
Sbjct: 6 HHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 27.7 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
P + E + K+K+ KK K+K+ KKKK+ R
Sbjct: 69 PEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.3 bits (60), Expect = 2.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKKRR 54
+K+K+ KK K+K+ KKKK+ R
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 27.4 bits (60), Expect = 2.3
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
P R N +K+++ +K +++ + K +
Sbjct: 70 PESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 25.9 bits (56), Expect = 7.3
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
E K +K+++ +K +++ + K R
Sbjct: 71 ESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 28.7 bits (65), Expect = 2.3
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+K + ++ + +K+K K
Sbjct: 232 AGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha
helices merohedral/ hemihedral twinning, plant protein;
1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X
Length = 79
Score = 26.7 bits (59), Expect = 2.4
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSG 114
QLR L L+ + ++ + N ++ I +
Sbjct: 27 KNSQLRDLDILLNCLQMNEGALF-VPHYNSRATVILVANEGRA 68
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 28.3 bits (62), Expect = 2.4
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
+ K+K + K+ ++++ + + + K+ K
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
Score = 27.9 bits (61), Expect = 3.2
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ K K ++ K+ ++++ + + + K+
Sbjct: 136 TQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPA 170
Score = 27.5 bits (60), Expect = 3.8
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
+K+K ++ K+ ++++ + R + PA K
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATK 172
Score = 27.5 bits (60), Expect = 4.1
Identities = 4/33 (12%), Positives = 18/33 (54%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
R + ++ +K+K ++ K+ ++++ + +
Sbjct: 129 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFT 161
Score = 27.5 bits (60), Expect = 4.6
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ K+++ + + +K+K ++ K+ ++RR
Sbjct: 125 QECKRRRFFENTQDVRKRKTREAAKRNRRRR 155
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 28.6 bits (63), Expect = 2.5
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKKR 53
KN K KK KK+ R
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSR 28
Score = 28.6 bits (63), Expect = 2.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKK 52
K K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 26.7 bits (58), Expect = 9.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKK 50
K K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 28.4 bits (63), Expect = 2.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKK 51
KK++KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 28.0 bits (62), Expect = 3.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 33 KKKKKKKKKKKKKKKKKKKKR 53
KK+ KK K KK K + +++
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQK 134
Score = 27.7 bits (61), Expect = 4.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 32 KKKKKKKKKKKKKKKKKKKKK 52
KK+ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQK 134
Score = 27.7 bits (61), Expect = 4.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
+ + KK+ KK K KK K + +++++
Sbjct: 107 RANMDGLKKRDKKNKSKKSKPAQGGEQKLI 136
Score = 26.9 bits (59), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRILAKSCENP 63
K+ KK K KK K + ++K S +P
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 28.5 bits (63), Expect = 2.6
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ K K K +K + +
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPK 49
Score = 27.3 bits (60), Expect = 6.4
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
R ++ K K K +K
Sbjct: 14 ASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAE 47
Score = 26.9 bits (59), Expect = 7.5
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ K K K +K + K
Sbjct: 22 RRGLWAIKAKHGGALPKAEKPAAIAEPK 49
Score = 26.5 bits (58), Expect = 9.3
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
++ K K K +K
Sbjct: 20 YHRRGLWAIKAKHGGALPKAEKPAAIAEP 48
Score = 26.5 bits (58), Expect = 9.6
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 33 KKKKKKKKKKKKKKKKKKKKRRILAK 58
++ K K K ++
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIA 46
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 27.6 bits (61), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
R++ K+KKN+ KK K+ KK ++
Sbjct: 104 SRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 27.6 bits (61), Expect = 2.8
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 9 EHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ + + E+ +++K KK + KK K+ KK +R
Sbjct: 88 TYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 28.8 bits (65), Expect = 2.7
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 29/111 (26%)
Query: 143 SSGDRAIKYRRMYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK----- 196
GDR + + G + R V+ Y + L + A+
Sbjct: 91 EEGDRVL----IAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146
Query: 197 ------------LSEVDKLSVLCYKPGE---VDQVSEVTSEEIR----GVD 228
L ++ + +C++ VD V+ + +D
Sbjct: 147 LFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEID 197
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 28.7 bits (65), Expect = 2.7
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKK---------KKKKKKRR 54
I F+ A+ +KK + K+ + K KK
Sbjct: 194 ITVNFDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 28.6 bits (65), Expect = 2.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 104 NDIAIVLYTSGSTGIPK 120
+ YT+G+TG+PK
Sbjct: 176 RAACGMAYTTGTTGLPK 192
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.4 bits (64), Expect = 2.8
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 29/111 (26%)
Query: 143 SSGDRAIKYRRMYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK----- 196
D + + G +G + + Y G D ++ + K
Sbjct: 84 EPEDDVL----IPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKI 139
Query: 197 ------------LSEVDKLSVLCYKPGE---VDQVSEVTSEEIR----GVD 228
+ + + C VD V+ + E++ +D
Sbjct: 140 VAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKID 190
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.7 bits (64), Expect = 2.9
Identities = 7/55 (12%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 3 INLTISEHHFDKVIIPAPFEREKAK--KKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+++ +H + +P + ++ + K+ + ++++K + + K+ R I
Sbjct: 971 AEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVI 1025
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 27.3 bits (60), Expect = 3.1
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K+ K+ ++ K +K K +K +
Sbjct: 63 KSWKRYEQEMLKNEKVAAKMLEKDATEVGV 92
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_D 3u5g_E
Length = 261
Score = 26.1 bits (57), Expect = 3.1
Identities = 2/31 (6%), Positives = 6/31 (19%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRIL 56
K+ K + ++
Sbjct: 9 LKRLAAPHHWLLDKLSGCYAPRPSAGPHKLR 39
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 28.7 bits (63), Expect = 3.1
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 9 EHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
+ H ++ P K++ +K K + KKK + ++ + P K
Sbjct: 509 QQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQD-NHEDGPTAK 565
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_I
Length = 200
Score = 28.1 bits (62), Expect = 3.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGR 68
KKK K+++ K K ++K + + S E+ GR
Sbjct: 122 GKKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGR 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.7 bits (62), Expect = 3.3
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 12 FDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
++ P ++ +++ +KK + K
Sbjct: 120 LKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 28.2 bits (62), Expect = 3.4
Identities = 7/67 (10%), Positives = 19/67 (28%)
Query: 226 GVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSS 285
V+D++ +V + G + + V A +D + +
Sbjct: 169 CVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKH 228
Query: 286 AGSTDSS 292
++
Sbjct: 229 GVILSTT 235
Score = 27.1 bits (59), Expect = 7.9
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 164 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ 215
V+D++ +V + G + + V A +D +
Sbjct: 170 VEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGT 221
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 27.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKK 47
E K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 26.2 bits (57), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F E+ K K K K K KKKK+ +KK
Sbjct: 95 FLTEEVKIVKRKMISKPKTDKKKKRSQKK 123
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 27.5 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKK 51
KAKK+ K + K K K KK K
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLK 30
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta
hairpin, transglutaminase fold, DNA-damage recognition,
DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae}
PDB: 2qsg_A* 2qsh_A*
Length = 533
Score = 28.4 bits (62), Expect = 3.8
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKKKRRI 55
K + K+ ++ + +++KRR
Sbjct: 16 KPSSKRNSDARRTSRNVCSNEERKRRK 42
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 28.3 bits (63), Expect = 3.9
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K+ ++K + KK+ K +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEV 658
Score = 27.1 bits (60), Expect = 9.3
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRL 78
K K+ ++K + KK+ K R + + + L
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPL 677
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
oxido-reductase, oxidoreductase; HET: CIT; 2.30A
{Streptococcus pneumoniae} PDB: 3qau_A
Length = 458
Score = 28.1 bits (62), Expect = 4.2
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 8 SEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKK--KKKKKKKRRILAK 58
S HH P A ++ + K KK +++ +L
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMKISWNGFSKKSYQERLELLKA 56
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.0 bits (62), Expect = 4.3
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 9 EHHFDKVIIPAP---FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
HH ++P F+RE+ + NK +K + K K KK
Sbjct: 6 HHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 26.3 bits (57), Expect = 4.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
KA K + + K +KK K +K K + KR
Sbjct: 10 KAGKVRKQTPKVEKKDKPRKTPKGRSYKR 38
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 27.9 bits (61), Expect = 4.8
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ + ++ + + K ++ K+ + R+
Sbjct: 242 AQGRTLRDVGELTRSSTKTRRSIKRPELGLRV 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.9 bits (61), Expect = 5.2
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPA 64
+ K+K+ + KK K+ K+ ++ K K +N
Sbjct: 843 HEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMT 883
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 27.3 bits (60), Expect = 5.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
F REKA+K K + +++KKK+ ++K R+ ++
Sbjct: 117 FGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQA 155
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 27.6 bits (62), Expect = 5.6
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 30/112 (26%)
Query: 143 SSGDRAIKYRRMYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK----- 196
S G + + + G +G R + + + G V +++ AL K
Sbjct: 93 SKGGKVL----VTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVE 148
Query: 197 -------------LSEVDKLSVLCYKPGE---VDQVSEVTSEEIR----GVD 228
L+ + +L+ + + + VD VS + +I+ G+D
Sbjct: 149 AVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLD 200
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.1 bits (61), Expect = 5.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKR 53
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.1 bits (61), Expect = 6.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKKKRR 54
K+ K +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 27.1 bits (59), Expect = 5.7
Identities = 1/29 (3%), Positives = 1/29 (3%)
Query: 26 AKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
A
Sbjct: 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 29
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 27.2 bits (61), Expect = 6.0
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKK 43
D+ ++ E+AK + K K
Sbjct: 181 DRCMVVPGVSAEEAKTLFPNMEVKAVPSGKG 211
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 27.2 bits (61), Expect = 6.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKK 44
D V++ E+AKK K K+ KK
Sbjct: 185 DSVMVLPTIPEEEAKKLFPKGVFTKELPSGKK 216
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.5 bits (60), Expect = 6.7
Identities = 7/62 (11%), Positives = 21/62 (33%)
Query: 18 PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLR 77
P + + + + ++ KK ++ ++ L + P Y+ + R
Sbjct: 87 VGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKR 146
Query: 78 LL 79
+
Sbjct: 147 PV 148
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
R++ K++KN+ KK + KK K KKK
Sbjct: 110 RKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 26.8 bits (60), Expect = 7.0
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKK 44
DK + + ++ K + K + KKK
Sbjct: 182 DKCCVIPTLQDDEISKHFKNEITKVEMPSKKK 213
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 26.8 bits (59), Expect = 7.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKK 49
++ K+K + K++K+++K +K K+
Sbjct: 144 KEIKEKYPRPPKRRKEERKGRKPWKE 169
Score = 26.4 bits (58), Expect = 7.8
Identities = 6/32 (18%), Positives = 20/32 (62%)
Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+++ + + + K+K + K++K+++K +K
Sbjct: 136 KKELEARIKEIKEKYPRPPKRRKEERKGRKPW 167
Score = 26.4 bits (58), Expect = 9.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
R K K+K + K++K+++K +K K+
Sbjct: 141 ARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.8 bits (59), Expect = 7.1
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
E +K+ K KK K KK K
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 27.2 bits (61), Expect = 7.4
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
I AP A KKK +K+ KK +
Sbjct: 617 IVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSGA 651
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 25.7 bits (57), Expect = 7.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKR 53
++ KK+ +KKK KR
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint,
cell cycle, cell division, mitosis, nucleus,
phosphorylation; 2.30A {Homo sapiens}
Length = 240
Score = 27.0 bits (59), Expect = 7.8
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 17 IPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
+P P+E+ K +K + ++ KKK + + ++
Sbjct: 53 LPLPYEQLKHFYRKPSPQAEEMLKKKPRATTEVSSRK 89
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 27.2 bits (61), Expect = 8.3
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 29/111 (26%)
Query: 143 SSGDRAIKYRRMYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK----- 196
GD + G +G R + R +K G L EVE L++
Sbjct: 96 EPGDSFL----TGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVL 151
Query: 197 ------------LSEVDKLSVLCYKPGE---VDQVSEVTSEEIR----GVD 228
+ +D LC++ VD V+ + I G+D
Sbjct: 152 LFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGID 202
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 25.7 bits (56), Expect = 8.4
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKK 42
P E + K K K K
Sbjct: 69 PLTSEAISQFLEKPKPKTASLIK 91
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 27.2 bits (60), Expect = 8.5
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
EKA + K K+K+ +K +
Sbjct: 47 EKAFAAREIKSLASKRKEDLQKITFLSRDIS 77
Score = 27.2 bits (60), Expect = 8.9
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
E+ A ++ K+K+ +K + ++
Sbjct: 46 LEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF 80
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.5 bits (59), Expect = 8.5
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 31 NKKKKKKKKKKKKKKKKKKKKKRRILAKSC 60
++K+ +++K ++ I+ C
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIASIVCGGC 209
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 26.9 bits (59), Expect = 8.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E+ K K K + ++K+ K + K +K ++K
Sbjct: 163 EKRKEKAKVSYDRRKQLAKLRVKAEKAAEEK 193
>2oqk_A Putative translation initiation factor EIF-1A; malaria,
eukaryotic initiation facto SGC, structural genomics;
1.80A {Cryptosporidium parvum iowa II}
Length = 117
Score = 26.1 bits (57), Expect = 8.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKKRR 54
KNK K K +++ K + K++
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELV 27
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 26.7 bits (59), Expect = 8.8
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYK 66
KK + + + K + K K K L + C + +
Sbjct: 234 KKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCE 273
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.0 bits (60), Expect = 8.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
+ K +K +KKKKKK K +
Sbjct: 359 AELKALLQSSASRKTQKKKKKKASKTAENA 388
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 25.5 bits (55), Expect = 9.7
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 38 KKKKKKKKKKKKKKKRR 54
K+ ++ K K++K+R+
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 26.4 bits (59), Expect = 10.0
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKK 50
K ++ + + + K K
Sbjct: 234 KVGLIAARRTGRLRGQAAATAAKADK 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.360
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,668,966
Number of extensions: 289044
Number of successful extensions: 5408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3681
Number of HSP's successfully gapped: 768
Length of query: 307
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 214
Effective length of database: 4,105,140
Effective search space: 878499960
Effective search space used: 878499960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)