RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8473
(307 letters)
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 60.7 bits (146), Expect = 6e-11
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 136 DDIHRCWSSGDRAIKYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
++ + + ++YKTGD R + D + Y GR D+QVKIRG+RV+L EVE+ L
Sbjct: 374 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL 433
Query: 195 SKLSEVDKLSVLCYKPGEVDQV--------SEVTSEEIR 225
K + + +V +K + + E++R
Sbjct: 434 LKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLR 472
Score = 46.4 bits (109), Expect = 2e-06
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
D + Y GR D+QVKIRG+RV+L EVE+ L K + + +V +K + A
Sbjct: 404 DGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA----- 458
Query: 288 STDSSFIVKSREDRAEE 304
+ V + E+
Sbjct: 459 -----YFVSEKHIPLEQ 470
Score = 29.1 bits (64), Expect = 0.74
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 102 QSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMY 155
+S D+A V+YTSG+TG PK +K ++ + + DR ++ +
Sbjct: 164 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASIS 217
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 57.6 bits (138), Expect = 5e-10
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 146 DRAIKYRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLS 204
+ I +GD +D + R S +K +G +V +E+E+ L + +
Sbjct: 406 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 465
Query: 205 VLCYKPGEVDQV----------SEVTSEEIR 225
V + ++ +T +EI
Sbjct: 466 VAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 496
Score = 43.0 bits (100), Expect = 3e-05
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
D+ R S +K +G +V +E+E+ L + +
Sbjct: 426 DEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 461
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 56.6 bits (136), Expect = 1e-09
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 150 KYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV-------- 200
++ MY +GD R +D GR D + + G+R+ +E+E+AL ++
Sbjct: 487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 546
Query: 201 -----DKLSVLCYKPGEVDQVSEVTSEEIR 225
+ ++ S E+R
Sbjct: 547 PHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576
Score = 39.6 bits (92), Expect = 4e-04
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
D GR D + + G+R+ +E+E+AL ++ + +V+ Q A
Sbjct: 503 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA----- 557
Query: 288 STDSSFIVKSREDRAEEELV 307
++ + + EL
Sbjct: 558 -----YVTLNHGEEPSPELY 572
Score = 37.7 bits (87), Expect = 0.001
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
+ D +LYTSGSTG PK
Sbjct: 250 NAEDPLFILYTSGSTGKPK 268
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 56.0 bits (134), Expect = 2e-09
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 150 KYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY 208
Y Y TGD D + GR D V + G+R+ +E+EAA+ + V + +V+ +
Sbjct: 477 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 536
Query: 209 KPGEVDQV 216
Q
Sbjct: 537 NDDLTGQA 544
Score = 40.6 bits (94), Expect = 2e-04
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ 278
D + GR D V + G+R+ +E+EAA+ + V + +V+ + Q
Sbjct: 493 DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 543
Score = 34.1 bits (77), Expect = 0.019
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 102 QSNDIAIVLYTSGSTGIPK 120
S D +LYTSGSTG PK
Sbjct: 237 DSEDPLFLLYTSGSTGAPK 255
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 54.9 bits (131), Expect = 4e-09
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 148 AIKYRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
A+ ++TGD ++ + + R +K G + ++E AL +V + +V+
Sbjct: 400 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 459
Query: 207 CYKPGEVDQV---------SEVTSEEIR 225
+ + + T EE+
Sbjct: 460 AIPHPKWQERPLAVVVPRGEKPTPEELN 487
Score = 41.4 bits (96), Expect = 9e-05
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
+ + + R +K G + ++E AL +V + +V+ + + A
Sbjct: 418 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLA----- 472
Query: 288 STDSSFIVKSREDRAEEELV 307
+V E EEL
Sbjct: 473 -----VVVPRGEKPTPEELN 487
Score = 28.7 bits (63), Expect = 0.92
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 93 MLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMY 126
AD + YT+G+TG+PK +
Sbjct: 158 GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSH 191
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 48.5 bits (114), Expect = 5e-07
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
Y+T D + + GR D + G + SE+E L V
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Score = 42.7 bits (99), Expect = 4e-05
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
+ + GR D + G + SE+E L V
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 46.9 bits (110), Expect = 1e-06
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 118 IPKEYRRMYKTGDYGRIV-------DDIHRCWSSGDRAIKYRRMYKTGDYGRIVDD-ILL 169
+ ++ R K G+ G ++ ++ + Y+TGD R+ D ++
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 170 YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV---------SEVT 220
EGR Q+ G +V EVE L V +++ + +
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484
Query: 221 SEEIR 225
+ E++
Sbjct: 485 AAELK 489
Score = 44.2 bits (103), Expect = 1e-05
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
D ++ EGR Q+ G +V EVE L V +++ DQ G
Sbjct: 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMV----SMPDQFL------G 469
Query: 288 STDSSFIVKSREDRAEEELV 307
FI+ E EL
Sbjct: 470 ERSCVFIIPRDEAPKAAELK 489
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 34.2 bits (78), Expect = 0.017
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+A K+ K+++ ++K ++ K K+K +K R+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 31.1 bits (70), Expect = 0.17
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
F + + +K ++ ++K ++ K K+K +K++
Sbjct: 300 FLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 29.8 bits (67), Expect = 0.082
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSC 60
K+ + K +K K K + + KK I K C
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVC 51
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.2 bits (71), Expect = 0.12
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F+ + +K+ K++K K K++ +K K+
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.52
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
+ + + + +K+ K++K K K++ ++L +
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.8 bits (70), Expect = 0.15
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKK 49
F+ +K +KK+ ++KK+ + +++K ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.5 bits (64), Expect = 0.71
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRILAK 58
+K++KK+ ++KK+ + ++ +
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.5 bits (64), Expect = 0.92
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ +K +KK+ ++KK+ + +++K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 27.0 bits (60), Expect = 2.5
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ K++KK+ ++KK+ + +++K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 26.2 bits (58), Expect = 4.1
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKK 52
+K+ KK+ ++KK+ + +++K ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 26.2 bits (58), Expect = 4.7
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 28 KKKNKKKKKKKKKKKKKKKKKKKKKR 53
+ + ++KK+ ++KK+ + +++K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 30.2 bits (67), Expect = 0.23
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKK----KKKKKKKKKKKKKRRILAKSCENPA 64
+ +I+P P ++A+ + + + + ++ RR L ++ E PA
Sbjct: 178 EGLIVPPPTTEDQARARMESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAEKPA 233
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 28.3 bits (63), Expect = 0.36
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGE 91
K+ K ++ K+ K KR L + + +A L +P +
Sbjct: 2 KQSMKAREVKRVALADKYFAKRAELKAIISDV--------NASDEDRWNAVLKLQTLPRD 53
Query: 92 SMLHADNNNEQSNDIA 107
S N +
Sbjct: 54 SSPSRQRNRCRQTGRP 69
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 29.4 bits (65), Expect = 0.49
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKK 44
D V++ E+AKK K K+ KK
Sbjct: 181 DSVMVLPTIPEEEAKKLFPKGVFTKELPSGKK 212
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 29.4 bits (64), Expect = 0.66
Identities = 11/92 (11%), Positives = 24/92 (26%)
Query: 84 SHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWS 143
I G ++ Q +D + + + + T + +
Sbjct: 395 EDRIIDGRDLMPLLEGKSQRSDHEFLFHYCNAYLNAVRWHPQNSTSIWKAFFFTPNFNPV 454
Query: 144 SGDRAIKYRRMYKTGDYGRIVDDILLYEGRTD 175
+ + G Y D LL++ D
Sbjct: 455 GSNGCFATHVCFCFGSYVTHHDPPLLFDISKD 486
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.9 bits (62), Expect = 0.93
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 30 KNKKKKKKKKKKKKKKKKKKKKKRR 54
KNK K K +++ K + + +K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELV 26
Score = 26.4 bits (58), Expect = 3.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 33 KKKKKKKKKKKKKKKKKKKKRRILAKSCENPAY 65
K K K K +++ K + + ++R L + Y
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQEY 34
Score = 26.0 bits (57), Expect = 3.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKRRILAK 58
K K K K +++ K + + +KR ++ K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
Score = 25.6 bits (56), Expect = 5.0
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
K K K K +++ K + + +K++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.4 bits (63), Expect = 1.1
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
K + +K++ K K+ + ++ +S
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIES 242
Score = 28.1 bits (62), Expect = 1.3
Identities = 6/53 (11%), Positives = 14/53 (26%)
Query: 1 MNINLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
L S + + +K++ K K+ + +K
Sbjct: 185 YQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKI 237
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 26.7 bits (59), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
+E+ + + KKKK+K++K
Sbjct: 57 RKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
E A+K++ + + KKKK++R
Sbjct: 54 ELARKERQLHMQLYPGWSARDNYGKKKKRKR 84
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 27.4 bits (60), Expect = 1.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 13 DKVIIPAPFEREKAKKKKNKKKKKKKKKKKKK 44
DK + + ++ K + K + KKK
Sbjct: 181 DKCCVIPTLQDDEISKHFKNEITKVEMPSKKK 212
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.0 bits (57), Expect = 1.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 19 APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
PF +E K + ++K K + ++K K K
Sbjct: 52 WPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 27.0 bits (59), Expect = 2.6
Identities = 4/39 (10%), Positives = 9/39 (23%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
K KKK + + + ++
Sbjct: 126 LSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQ 164
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 25.9 bits (57), Expect = 2.9
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKK 46
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 3.9
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
K+ + + K+ +K++
Sbjct: 72 LWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 4.6
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKR 53
K+ + + K+ +KR
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
Score = 24.8 bits (54), Expect = 6.8
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 27 KKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
K+ + + K+ ++R
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKR 100
Score = 24.8 bits (54), Expect = 7.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKKK 51
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.4 bits (53), Expect = 8.3
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 16 IIPAPFEREKAKKKKNKKKKKKKKK 40
I+ K+ +K++
Sbjct: 77 ILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.4 bits (53), Expect = 9.9
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
K + + K+ +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 25.4 bits (56), Expect = 2.9
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 213 VDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRV----DLSEVEAALSKISEVDKLSV 268
VD+ E+ ++ +LL +T S++ R NR+ D +V L ++ ++
Sbjct: 1 VDKGLELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLATL 60
Query: 269 LCYKPGEVDQIW 280
+ + G+ + +
Sbjct: 61 VPRQSGQREDRY 72
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 25.5 bits (56), Expect = 2.9
Identities = 6/52 (11%), Positives = 18/52 (34%)
Query: 1 MNINLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
+ + A +A+ ++ + KK +K K + +++
Sbjct: 29 VELKALFVGGEQTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRT 80
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 27.0 bits (59), Expect = 3.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
+ EKA + K K+K+ +K +
Sbjct: 45 DLEKAFAAREIKSLASKRKEDLQKITFLSRDIS 77
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 25.8 bits (56), Expect = 3.6
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 20 PFEREKAKKKKNKKKKKKKKKKK 42
P E + K K K K
Sbjct: 68 PLTSEAISQFLEKPKPKTASLIK 90
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.4 bits (56), Expect = 3.6
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 14 KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
+ P + + K +++ KKK ++ + K+K K R+
Sbjct: 52 LHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRM 93
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 25.9 bits (57), Expect = 3.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 38 KKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSL 73
+ KK++K++ K +K +AK K R V+ +
Sbjct: 2 RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDV 37
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 25.2 bits (55), Expect = 3.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 32 KKKKKKKKKKKKKKKKKKKKKR 53
++ KK+ +KKK KR
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.6 bits (56), Expect = 3.9
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 21 FEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
++ K+ + + K+ K+K
Sbjct: 67 YKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.7 bits (54), Expect = 4.8
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 27 KKKKNKKKKKKKKKKKKK 44
+ +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 7.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 32 KKKKKKKKKKKKKKKKKK 49
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 7.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 33 KKKKKKKKKKKKKKKKKK 50
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 7.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 34 KKKKKKKKKKKKKKKKKK 51
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 7.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 35 KKKKKKKKKKKKKKKKKK 52
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 8.0
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 37 KKKKKKKKKKKKKKKKRRI 55
+K KKK +
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
Score = 23.9 bits (52), Expect = 10.0
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 38 KKKKKKKKKKKKKKKRRILAK 58
+K KKK L
Sbjct: 2 SSGSSGRKPPPKKKMTGTLET 22
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 26.1 bits (56), Expect = 4.8
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
E K+ K +K K +
Sbjct: 267 EAELKQGITKPVSEKLLGSSYKTTTAIE 294
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.4 bits (55), Expect = 5.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
E+E+ + K KKK + K
Sbjct: 86 EKEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 26.1 bits (57), Expect = 6.0
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
E K+ +K K+ + K + K
Sbjct: 225 EWHTLSKEYETQKVPKENAENYLIKISENKN 255
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.5 bits (55), Expect = 6.9
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 31 NKKKKKKKKKKKKKKKKKKKKK 52
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.5 bits (55), Expect = 6.9
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 29 KKNKKKKKKKKKKKKKKKKKKK 50
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 9.0
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKK 48
E+ K K + + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 9.8
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 20 PFEREKAKKKKNKKKKKKKKK 40
+RE + + + +K+
Sbjct: 161 KPKREAFLEANRAELVRFQKE 181
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 24.6 bits (53), Expect = 10.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKK 48
EK K + K +KK + + K K
Sbjct: 8 EKVKGLEEYDKIQKKMEDVMEGKGK 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.360
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,131,416
Number of extensions: 56036
Number of successful extensions: 1130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 189
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)