BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8475
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
Length = 592
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/143 (67%), Positives = 116/143 (81%), Gaps = 1/143 (0%)
Query: 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRH 148
LPE A+RDL VATIA+KYTQSNSV YAKNGQVIGIGAGQQSRIHCTRLAGDK + W++RH
Sbjct: 410 LPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRH 469
Query: 149 HPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFI 208
HP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ PE +TE EK +++
Sbjct: 470 HPQVLSMKFKTGVKRAEISNAIDQYVTGTIGEDEDLIKWKALFE-EVPELLTEAEKKEWV 528
Query: 209 YTLHGVSVASDAFFPFRDNIDRA 231
L VS++SDAFFPFRDN+DRA
Sbjct: 529 EKLTEVSISSDAFFPFRDNVDRA 551
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ PE +TE EK
Sbjct: 467 LRHHPQVLSMKFKTGVKRAEISNAIDQYVTGTIGEDEDLIKWKALFE-EVPELLTEAEKK 525
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRA 86
+++ L VS++SDAFFPFRDN+DRA
Sbjct: 526 EWVEKLTEVSISSDAFFPFRDNVDRA 551
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 121/153 (79%), Gaps = 1/153 (0%)
Query: 79 FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAG 138
F++ + + LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAG
Sbjct: 401 FKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAG 460
Query: 139 DKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEP 198
DK ++W++RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +
Sbjct: 461 DKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ- 519
Query: 199 MTEKEKADFIYTLHGVSVASDAFFPFRDNIDRA 231
+TE EK +I L VS++SDAFFPFRDN+DRA
Sbjct: 520 LTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRA 552
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK
Sbjct: 468 LRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKK 526
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRA 86
+I L VS++SDAFFPFRDN+DRA
Sbjct: 527 QWIAKLTAVSLSSDAFFPFRDNVDRA 552
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 121/153 (79%), Gaps = 1/153 (0%)
Query: 79 FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAG 138
F++ + + LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAG
Sbjct: 421 FKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAG 480
Query: 139 DKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEP 198
DK ++W++RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +
Sbjct: 481 DKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ- 539
Query: 199 MTEKEKADFIYTLHGVSVASDAFFPFRDNIDRA 231
+TE EK +I L VS++SDAFFPFRDN+DRA
Sbjct: 540 LTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRA 572
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK
Sbjct: 488 LRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQ-LTEAEKK 546
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRA 86
+I L VS++SDAFFPFRDN+DRA
Sbjct: 547 QWIAKLTAVSLSSDAFFPFRDNVDRA 572
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 206 bits (524), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 121/153 (79%), Gaps = 1/153 (0%)
Query: 79 FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAG 138
F++ + + LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAG
Sbjct: 401 FKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAG 460
Query: 139 DKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEP 198
DK ++W++RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +
Sbjct: 461 DKANSWWLRHHPRVLSXKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPAQ- 519
Query: 199 MTEKEKADFIYTLHGVSVASDAFFPFRDNIDRA 231
+TE EK +I L VS++SDAFFPFRDN+DRA
Sbjct: 520 LTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRA 552
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P + +TE EK
Sbjct: 468 LRHHPRVLSXKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPAQ-LTEAEKK 526
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRA 86
+I L VS++SDAFFPFRDN+DRA
Sbjct: 527 QWIAKLTAVSLSSDAFFPFRDNVDRA 552
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 131
++DL +A +T+SN+VVY KNG + IG G SRI
Sbjct: 419 LKDLEIAXKIAAFTKSNNVVYVKNGAXVAIGXGXTSRI 456
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 66 LHGVSVASDAFFPFRDNID-------RAVLLPEFAIRDLTVATIALKY 106
L G +AS+AFFPFRD+ID +A++ P +IRD V A +Y
Sbjct: 473 LQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEY 520
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 211 LHGVSVASDAFFPFRDNIDRA 231
L G +AS+AFFPFRD+ID A
Sbjct: 473 LQGCVLASEAFFPFRDSIDEA 493
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIH----CTRLAGDK 140
L E + DL A ++ +SN+V+ AK+G +GIG+GQ SR T +AG+K
Sbjct: 347 LSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEK 402
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 68 GVSVASDAFFPFRDNID-------RAVLLPEFAIRDLTV 99
G ASDAFFPF D+++ +AV+ P +IRD V
Sbjct: 405 GAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEV 443
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 140
+ DL A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 411 LTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 66 LHGVSVASDAFFPFRDNID-------RAVLLPEFAIRDLTVATIALK 105
+ G ASDAFFPF D ++ AV+ P ++RD V A K
Sbjct: 462 VRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAK 508
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 122 GIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKFRKGVK 162
G G+G Q + L + ++Y +HH W F G K
Sbjct: 64 GSGSGTQFSLKINSLQPEDFGSYYCQHHYGSPPWTFGGGTK 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,879,654
Number of Sequences: 62578
Number of extensions: 338927
Number of successful extensions: 733
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 20
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)