Query psy8475
Match_columns 233
No_of_seqs 309 out of 1121
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:48:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07106 5-aminoimidazole-4-ca 100.0 1.9E-63 4.1E-68 464.0 11.8 174 58-233 172-351 (390)
2 KOG2555|consensus 100.0 3.2E-59 7E-64 439.0 6.2 172 61-233 373-549 (588)
3 COG0138 PurH AICAR transformyl 100.0 3E-40 6.6E-45 315.1 8.9 113 57-233 360-476 (515)
4 TIGR00355 purH phosphoribosyla 100.0 1.4E-39 3.1E-44 313.1 9.1 112 58-233 357-472 (511)
5 PLN02891 IMP cyclohydrolase 100.0 2.1E-38 4.6E-43 305.8 9.2 109 58-233 394-508 (547)
6 PRK00881 purH bifunctional pho 100.0 1.3E-33 2.8E-38 272.6 8.9 112 58-233 359-474 (513)
7 PF01808 AICARFT_IMPCHas: AICA 100.0 5.3E-30 1.2E-34 235.6 6.8 82 59-141 230-315 (315)
8 smart00798 AICARFT_IMPCHas AIC 100.0 9.9E-30 2.2E-34 233.4 8.0 83 58-141 225-311 (311)
9 KOG2555|consensus 99.9 1.3E-27 2.8E-32 225.8 2.8 112 1-117 463-581 (588)
10 PRK07106 5-aminoimidazole-4-ca 99.9 1.3E-24 2.8E-29 203.7 3.9 106 1-107 265-377 (390)
11 COG0138 PurH AICAR transformyl 96.5 0.00045 9.7E-09 67.8 -1.4 86 16-106 409-501 (515)
12 TIGR00355 purH phosphoribosyla 94.7 0.012 2.6E-07 58.3 0.9 41 66-106 450-497 (511)
13 PLN02891 IMP cyclohydrolase 92.7 0.047 1E-06 54.5 1.1 41 66-106 484-533 (547)
14 PRK00881 purH bifunctional pho 92.3 0.02 4.3E-07 56.9 -2.1 87 15-106 406-499 (513)
15 PF06230 DUF1009: Protein of u 77.2 4.8 0.00011 35.9 5.1 71 67-143 65-143 (214)
16 COG0120 RpiA Ribose 5-phosphat 71.0 3.1 6.8E-05 37.6 2.3 33 97-137 8-40 (227)
17 PLN02384 ribose-5-phosphate is 68.9 4.3 9.4E-05 37.4 2.8 26 98-131 38-63 (264)
18 PRK13978 ribose-5-phosphate is 67.4 5.1 0.00011 36.1 2.9 26 98-131 10-35 (228)
19 PRK00474 rps9p 30S ribosomal p 42.5 17 0.00037 30.3 1.8 19 124-142 69-87 (134)
20 PF00380 Ribosomal_S9: Ribosom 41.7 13 0.00028 30.4 1.0 19 124-142 60-78 (121)
21 CHL00079 rps9 ribosomal protei 40.8 19 0.00041 29.9 1.9 20 123-142 68-87 (130)
22 PRK00132 rpsI 30S ribosomal pr 39.3 16 0.00035 30.2 1.3 20 123-142 68-87 (130)
23 PRK05439 pantothenate kinase; 39.0 22 0.00049 33.3 2.3 42 37-79 13-56 (311)
24 COG0117 RibD Pyrimidine deamin 37.9 33 0.00072 29.2 2.9 47 96-142 13-63 (146)
25 COG3620 Predicted transcriptio 37.4 32 0.0007 30.2 2.8 33 89-123 141-173 (187)
26 PLN00210 40S ribosomal protein 36.7 21 0.00045 30.0 1.5 19 124-142 69-87 (141)
27 PTZ00086 40S ribosomal protein 34.5 21 0.00046 30.2 1.2 20 123-142 74-93 (147)
28 PF14080 DUF4261: Domain of un 33.1 29 0.00062 25.6 1.6 40 89-131 20-60 (77)
29 KOG1753|consensus 32.7 26 0.00055 29.6 1.4 22 121-142 70-91 (145)
30 TIGR03627 arch_S9P archaeal ri 31.8 31 0.00066 28.6 1.7 19 124-142 65-83 (130)
31 PRK00702 ribose-5-phosphate is 28.8 57 0.0012 29.0 3.1 32 98-137 9-40 (220)
32 PF01808 AICARFT_IMPCHas: AICA 27.5 1.1E+02 0.0023 29.1 4.7 55 81-141 107-162 (315)
33 PF03259 Robl_LC7: Roadblock/L 27.2 1.4E+02 0.0031 21.2 4.5 32 110-143 17-48 (91)
34 cd01398 RPI_A RPI_A: Ribose 5- 25.4 66 0.0014 28.2 2.8 31 98-136 4-34 (213)
35 PF13128 DUF3954: Protein of u 24.4 41 0.0009 23.7 1.1 26 107-132 7-37 (50)
36 TIGR00021 rpiA ribose 5-phosph 23.3 88 0.0019 27.8 3.2 31 98-136 4-34 (218)
37 smart00798 AICARFT_IMPCHas AIC 21.7 1.1E+02 0.0024 29.0 3.6 48 89-141 112-159 (311)
38 cd01286 deoxycytidylate_deamin 21.3 1.4E+02 0.003 24.1 3.8 32 111-142 23-80 (131)
39 COG0103 RpsI Ribosomal protein 21.3 65 0.0014 26.9 1.9 20 123-142 68-87 (130)
40 KOG3075|consensus 20.8 48 0.001 30.7 1.1 22 117-143 42-63 (261)
41 COG3494 Uncharacterized protei 20.8 1.8E+02 0.0038 27.3 4.7 44 80-124 140-186 (279)
No 1
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00 E-value=1.9e-63 Score=463.99 Aligned_cols=174 Identities=46% Similarity=0.770 Sum_probs=165.3
Q ss_pred hhhhhhhccCcEEEeecCCCc----Cc-ccccc-cCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchh
Q psy8475 58 EKADFIYTLHGVSVASDAFFP----FR-DNIDR-AVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 131 (233)
Q Consensus 58 Ek~e~rsvlGGvLVQsDdf~p----f~-dVVTk-ak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv 131 (233)
...++|++.||+|+|+.+... .+ ++||+ ++ ||+++++||+|||+||||||||||||+|||||||||+||||||
T Consensus 172 ~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vVT~~~~-pt~~e~~DL~fAw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRV 250 (390)
T PRK07106 172 APIETKDVFGITFEQGRNELKIDEDLLKNIVTENKE-LPDEAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRI 250 (390)
T ss_pred CceEEEEEeeEEEEECCCCCCCCHHHhhcccCCCCC-cCHHHHHHHHHHHHHHHhcccceEEEEeCCeEEEeCCCCcchH
Confidence 457899999999999955432 25 99998 66 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhccc
Q psy8475 132 HCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 211 (233)
Q Consensus 132 ~a~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l 211 (233)
||+|+|++||++|||||||++++|+|++++||++|+|+||.|+.|+....+++++|+.+|+ ++|+|||++||++|++++
T Consensus 251 d~~rlA~~KA~~~~lr~hp~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~f~-~~p~~lt~~er~~~~~~l 329 (390)
T PRK07106 251 HCTRLAGNKADIWYLRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYMDVLADGVWQQFFT-EKPEPLTREEKRAWLATL 329 (390)
T ss_pred HHHHHHHHHhcchhhhccchhhcccccccccccccccchhhhhccchhchhhhhhhhhhcc-cCcccccHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999988999999999999 999999999999999999
Q ss_pred CceEEeccccccCCCccccccC
Q psy8475 212 HGVSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 212 ~g~~l~SDaFfPF~D~vd~A~~ 233 (233)
+|+|||||||||||||||+|++
T Consensus 330 ~G~vlASDAFFPF~D~Id~Aa~ 351 (390)
T PRK07106 330 TGVALGSDAFFPFGDNIERAAK 351 (390)
T ss_pred CCeEEEecccCCCCchHHHHHH
Confidence 9999999999999999999974
No 2
>KOG2555|consensus
Probab=100.00 E-value=3.2e-59 Score=439.00 Aligned_cols=172 Identities=56% Similarity=0.887 Sum_probs=158.8
Q ss_pred hhhhccCcEEEee-cCCC----cCcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHH
Q psy8475 61 DFIYTLHGVSVAS-DAFF----PFRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTR 135 (233)
Q Consensus 61 e~rsvlGGvLVQs-Ddf~----pf~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~ 135 (233)
+.|.+.|+-|-|. ++.. .|-++|++++..|+..++||.|||.|+|||||||||||||||+||||+||||||+|+|
T Consensus 373 e~rqv~G~~L~Qkrnda~i~~s~F~~vvsknk~l~e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqsRihctR 452 (588)
T KOG2555|consen 373 ERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLPESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCTR 452 (588)
T ss_pred eeeeeeeEEeeeecCcCcchhHHHHHHhhcCCCcchHHHHHHHHHHHhhhhhccccEEEEeCCEEEeecCCCccceeeee
Confidence 3444445555554 3322 2588999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCceE
Q psy8475 136 LAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVS 215 (233)
Q Consensus 136 ~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g~~ 215 (233)
+|.+||++|||||||+||+|+||.|+||+|++||||+|+.|+++++.+..+|+..|+ +.|+|||++||++|++++.|++
T Consensus 453 lAgdkadnwwlr~hp~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe-~~p~~~t~~e~~ewl~~l~~v~ 531 (588)
T KOG2555|consen 453 LAGDKADNWWLRQHPKVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFE-EVPEPLTKEERKEWLEKLKGVS 531 (588)
T ss_pred cccccccchhhhcCchhhhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhh-hcccccChHHHHHHHHHhcCce
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred EeccccccCCCccccccC
Q psy8475 216 VASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 216 l~SDaFfPF~D~vd~A~~ 233 (233)
|+|||||||+|||++|.+
T Consensus 532 l~SDAFFPF~Dnv~ra~q 549 (588)
T KOG2555|consen 532 LSSDAFFPFPDNVYRAVQ 549 (588)
T ss_pred ecccccccCchHHHHHHh
Confidence 999999999999999864
No 3
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-40 Score=315.14 Aligned_cols=113 Identities=37% Similarity=0.496 Sum_probs=102.3
Q ss_pred hhhhhhhhccCcEEEeecCCCc----CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhH
Q psy8475 57 KEKADFIYTLHGVSVASDAFFP----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIH 132 (233)
Q Consensus 57 ~Ek~e~rsvlGGvLVQsDdf~p----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~ 132 (233)
..+.+++++.||+|+|+.|... .|++||+++ ||+++++||+|||+++||||||||||+|||+|||||+||||||+
T Consensus 360 ~~~~~~k~v~GGlLvQ~~d~~~~~~~~~~vVTkr~-pt~~e~~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~sRV~ 438 (515)
T COG0138 360 AAGLEFKRVSGGLLVQERDDGMIDEAELKVVTKRQ-PTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVD 438 (515)
T ss_pred CcceeEEEEeeeEEEEcccccccCccceeEecCCC-CCHHHHHHHHHHHHHHhHhccceEEEEcCCeEEEecCCccchHH
Confidence 3468889999999999955322 499999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccC
Q psy8475 133 CTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLH 212 (233)
Q Consensus 133 a~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~ 212 (233)
|+|||+.||+.||++ +.
T Consensus 439 sariA~~kA~~~~~~---------------------------------------------------------------~~ 455 (515)
T COG0138 439 SARIAAEKAGDAGLR---------------------------------------------------------------AH 455 (515)
T ss_pred HHHHHHHHHHHhhhh---------------------------------------------------------------cc
Confidence 999999999976533 44
Q ss_pred ceEEeccccccCCCccccccC
Q psy8475 213 GVSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 213 g~~l~SDaFfPF~D~vd~A~~ 233 (233)
|+||+|||||||+|+|+.|++
T Consensus 456 Gav~ASDAFFPF~D~i~~aA~ 476 (515)
T COG0138 456 GAVLASDAFFPFPDGIDAAAK 476 (515)
T ss_pred CcEEeecccCCCcchHHHHHH
Confidence 999999999999999999874
No 4
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=100.00 E-value=1.4e-39 Score=313.09 Aligned_cols=112 Identities=36% Similarity=0.465 Sum_probs=100.2
Q ss_pred hhhhhhhccCcEEEeecCCCc----CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 58 EKADFIYTLHGVSVASDAFFP----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 58 Ek~e~rsvlGGvLVQsDdf~p----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
...++|++.||+|+|+.|... -|++||+++ ||+++++||.|||+||||||||||||+|||||||||+||||||||
T Consensus 357 ~~~~~r~v~GG~LvQ~~d~~~~~~~~~~vVt~~~-pt~~e~~dL~FAwkv~k~vKSNAIv~akd~~tvGiGaGQ~sRV~s 435 (511)
T TIGR00355 357 PELDFKRVNGGLLVQDRDDGMVDQSTLKVVTKRQ-PTEQELIDLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMSRVGS 435 (511)
T ss_pred CCceEEEEeeEEEEECCCCCCCChhhceeeCCCC-CCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHH
Confidence 456799999999999955332 289999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCc
Q psy8475 134 TRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213 (233)
Q Consensus 134 ~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g 213 (233)
+|+|++||++ .. .+++|
T Consensus 436 ~riA~~kA~~-----------------------------------------------~~----------------~~~~G 452 (511)
T TIGR00355 436 AKIAGIKADD-----------------------------------------------EG----------------LEAKG 452 (511)
T ss_pred HHHHHHHHHh-----------------------------------------------hC----------------CCccC
Confidence 9999999962 00 34689
Q ss_pred eEEeccccccCCCccccccC
Q psy8475 214 VSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 214 ~~l~SDaFfPF~D~vd~A~~ 233 (233)
+||||||||||+|+||.|++
T Consensus 453 ~vlASDAFFPF~D~ve~aa~ 472 (511)
T TIGR00355 453 SSLASDAFFPFRDGVEEAAA 472 (511)
T ss_pred cEEEeccccCCCccHHHHHH
Confidence 99999999999999999874
No 5
>PLN02891 IMP cyclohydrolase
Probab=100.00 E-value=2.1e-38 Score=305.84 Aligned_cols=109 Identities=29% Similarity=0.439 Sum_probs=99.8
Q ss_pred hhhhhhhccCcEEEeecCCC-c---CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 58 EKADFIYTLHGVSVASDAFF-P---FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 58 Ek~e~rsvlGGvLVQsDdf~-p---f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
.+.+++++.||+|+|+.|.. . -|++||+++ ||+++++||+|||+||||||||||||+||++|||||+||||||||
T Consensus 394 ~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~-Pt~~e~~DL~FAwkvvK~vKSNAIV~akd~~tvGIGaGQ~sRVda 472 (547)
T PLN02891 394 GRLSLRQVGGGWLAQDSDDLTPEDITFTVVSEKV-PTESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVES 472 (547)
T ss_pred CCeEEEEEeeEEEEECCCCCCCCHHHCeecCCCC-cCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHH
Confidence 46789999999999995532 2 289999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCc
Q psy8475 134 TRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213 (233)
Q Consensus 134 ~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g 213 (233)
+|+|++||+ .+++|
T Consensus 473 ~~iA~~kA~------------------------------------------------------------------~~~~G 486 (547)
T PLN02891 473 LRIALEKAG------------------------------------------------------------------EEAKG 486 (547)
T ss_pred HHHHHHHhc------------------------------------------------------------------cccCC
Confidence 999999996 24679
Q ss_pred eEEeccccccCC--CccccccC
Q psy8475 214 VSVASDAFFPFR--DNIDRAVL 233 (233)
Q Consensus 214 ~~l~SDaFfPF~--D~vd~A~~ 233 (233)
+||||||||||+ |+||.|++
T Consensus 487 ~vlASDAFFPF~~~D~ve~aa~ 508 (547)
T PLN02891 487 AALASDAFFPFAWNDAVEEACQ 508 (547)
T ss_pred eEEEecccCCCCCCccHHHHHH
Confidence 999999999998 99999874
No 6
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-33 Score=272.58 Aligned_cols=112 Identities=37% Similarity=0.505 Sum_probs=100.5
Q ss_pred hhhhhhhccCcEEEeecCCC--c--CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 58 EKADFIYTLHGVSVASDAFF--P--FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 58 Ek~e~rsvlGGvLVQsDdf~--p--f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
...+++++.||+|+|+.|.. . .+.+||+++ |++++++||.|||+++||+||||||++|||+||||||||||||+|
T Consensus 359 ~~~~~r~v~Gg~LvQ~~d~~~~~~~~~~vvT~~~-pt~~e~~Dl~faw~v~K~vkSNaIVvvkd~~~vgIgaGQ~sRvd~ 437 (513)
T PRK00881 359 WEGDFKSVSGGLLVQDRDLGMVDPADLKVVTKRQ-PTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDS 437 (513)
T ss_pred CCeeEEEEeeeEEEECCCCCCcCcccceeecCCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEeCCeEEEECCCCcchHHH
Confidence 35689999999999995532 1 389999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCc
Q psy8475 134 TRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213 (233)
Q Consensus 134 ~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g 213 (233)
+++|++||++| ...+.|
T Consensus 438 t~~Ai~rag~~---------------------------------------------------------------~~~~~g 454 (513)
T PRK00881 438 ARIAIEKAGDA---------------------------------------------------------------GLDLKG 454 (513)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------ccCcCC
Confidence 99999999832 024689
Q ss_pred eEEeccccccCCCccccccC
Q psy8475 214 VSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 214 ~~l~SDaFfPF~D~vd~A~~ 233 (233)
+||+|||||||+|+|+.|++
T Consensus 455 av~aSDafFPf~Dtie~aa~ 474 (513)
T PRK00881 455 AVLASDAFFPFRDGVEAAAK 474 (513)
T ss_pred eEEEeeCCCCchhHHHHHHH
Confidence 99999999999999999864
No 7
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=99.96 E-value=5.3e-30 Score=235.64 Aligned_cols=82 Identities=32% Similarity=0.374 Sum_probs=72.9
Q ss_pred hhhhhhccCcEEEeecCCCc----CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHH
Q psy8475 59 KADFIYTLHGVSVASDAFFP----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCT 134 (233)
Q Consensus 59 k~e~rsvlGGvLVQsDdf~p----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~ 134 (233)
..++|++.||+|+|+.|... .|++||+++ ||+++++||.|||++|||||||||||+|||+|||||+||||||||+
T Consensus 230 ~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~-Pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~sRVda~ 308 (315)
T PF01808_consen 230 ELEFRSVDGGLLVQDRDNALIDPDDWKVVTKRQ-PTEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMSRVDAA 308 (315)
T ss_dssp SEEEEEETTEEEEEE--SGGCSGGGGEEESSS----HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred CeEEEEEeccEEEEcCCCCCCCHHHCeEecCCC-CCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcchHHHH
Confidence 78899999999999955432 299999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy8475 135 RLAGDKV 141 (233)
Q Consensus 135 ~~A~~kA 141 (233)
|+|++||
T Consensus 309 ~iA~~KA 315 (315)
T PF01808_consen 309 RIAIEKA 315 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999998
No 8
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=99.96 E-value=9.9e-30 Score=233.39 Aligned_cols=83 Identities=33% Similarity=0.427 Sum_probs=76.9
Q ss_pred hhhhhhhccCcEEEeecCCCc----CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 58 EKADFIYTLHGVSVASDAFFP----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 58 Ek~e~rsvlGGvLVQsDdf~p----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
...++|++.||+|+|+.|... -|++||+++ ||+++++||+|||+||||||||||||+|||+|||||+||||||||
T Consensus 225 ~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vvt~~~-pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVda 303 (311)
T smart00798 225 DGLEFKSVSGGLLVQDRDNGGIDPEDLKVVTKRQ-PTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDS 303 (311)
T ss_pred CceEEEEEeeEEEEECCCCCCCCHHHCEecCCCC-CCHHHHHHhHHHHHHHhhcccceEEEEeCCeEEEecCCCccHHHH
Confidence 457899999999999955432 289999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy8475 134 TRLAGDKV 141 (233)
Q Consensus 134 ~~~A~~kA 141 (233)
+|+|++||
T Consensus 304 ~~iA~~kA 311 (311)
T smart00798 304 ARIAAEKA 311 (311)
T ss_pred HHHHHhhC
Confidence 99999997
No 9
>KOG2555|consensus
Probab=99.93 E-value=1.3e-27 Score=225.82 Aligned_cols=112 Identities=47% Similarity=0.816 Sum_probs=103.0
Q ss_pred CCCCCcccCCCccCCCcccccchhhhhhhcCCCCCCCchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEeecCCCcCc
Q psy8475 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFR 80 (233)
Q Consensus 1 LR~hp~vl~l~fk~~~kr~~~~Naid~y~~~~~~~~~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQsDdf~pf~ 80 (233)
|||||+||+|+||+|+|||||+||||+||.|+++++++..+||+.|++ +|+|||+|||.||++.+.|+.+.||+||||.
T Consensus 463 lr~hp~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe~-~p~~~t~~e~~ewl~~l~~v~l~SDAFFPF~ 541 (588)
T KOG2555|consen 463 LRQHPKVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFEE-VPEPLTKEERKEWLEKLKGVSLSSDAFFPFP 541 (588)
T ss_pred hhcCchhhhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhhh-cccccChHHHHHHHHHhcCceecccccccCc
Confidence 799999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ccccccCC-------CCHHHHHhHHHHHHHHHhhccceEEEeeC
Q psy8475 81 DNIDRAVL-------LPEFAIRDLTVATIALKYTQSNSVVYAKN 117 (233)
Q Consensus 81 dVVTkak~-------p~~eeirDL~FAwkvvKyvkSNaIv~ak~ 117 (233)
|+|.++.+ .|.+++.|-.+...|.+| .|+++..
T Consensus 542 Dnv~ra~qsGv~yiaaP~GSv~D~~v~~a~d~~----~iv~~~t 581 (588)
T KOG2555|consen 542 DNVYRAVQSGVKYIAAPSGSVMDKVVIDACDEF----GIVLAET 581 (588)
T ss_pred hHHHHHHhcCCeEEecCCCcchhHHHHHHHHhh----CeEEEec
Confidence 99988865 577889998888887665 5666643
No 10
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=99.90 E-value=1.3e-24 Score=203.70 Aligned_cols=106 Identities=41% Similarity=0.743 Sum_probs=101.0
Q ss_pred CCCCCcccCCCccCCCcccccchhhhhhhcCCCCCCCchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEeecCCCcCc
Q psy8475 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFR 80 (233)
Q Consensus 1 LR~hp~vl~l~fk~~~kr~~~~Naid~y~~~~~~~~~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQsDdf~pf~ 80 (233)
|||||+|++|||++++||++|+|+||+|++|+....+++++|+++|++ +|+|||++||.+|.+.+.|+.+.||+||||.
T Consensus 265 lr~hp~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~f~~-~p~~lt~~er~~~~~~l~G~vlASDAFFPF~ 343 (390)
T PRK07106 265 LRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYMDVLADGVWQQFFTE-KPEPLTREEKRAWLATLTGVALGSDAFFPFG 343 (390)
T ss_pred hhccchhhcccccccccccccccchhhhhccchhchhhhhhhhhhccc-CcccccHHHHHHHhhhcCCeEEEecccCCCC
Confidence 799999999999999999999999999999999888999999999997 9999999999999999999999999999998
Q ss_pred ccccccCC-------CCHHHHHhHHHHHHHHHhh
Q psy8475 81 DNIDRAVL-------LPEFAIRDLTVATIALKYT 107 (233)
Q Consensus 81 dVVTkak~-------p~~eeirDL~FAwkvvKyv 107 (233)
|.|..+.+ +|++++||..++..|.+|=
T Consensus 344 D~Id~Aa~~GV~aIiQPGGSiRD~evI~aane~g 377 (390)
T PRK07106 344 DNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYG 377 (390)
T ss_pred chHHHHHHcCCEEEECCCCCCCcHHHHHHHHHhC
Confidence 88877654 8999999999999999983
No 11
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.00045 Score=67.80 Aligned_cols=86 Identities=33% Similarity=0.357 Sum_probs=55.3
Q ss_pred CcccccchhhhhhhcCCCCCCCchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEeecCCCcCcccccccCC-------
Q psy8475 16 VKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRDNIDRAVL------- 88 (233)
Q Consensus 16 ~kr~~~~Naid~y~~~~~~~~~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQsDdf~pf~dVVTkak~------- 88 (233)
+-+..|||||- |..+...-...-+|-.+.-.. .+-.+--.++....+|..+.||+||||.|.|..+.+
T Consensus 409 v~k~vKSNaIv-~akd~~TvGiGaGQ~sRV~sa----riA~~kA~~~~~~~~Gav~ASDAFFPF~D~i~~aA~aGi~aII 483 (515)
T COG0138 409 VVKHVKSNAIV-YAKDGQTVGIGAGQMSRVDSA----RIAAEKAGDAGLRAHGAVLASDAFFPFPDGIDAAAKAGIKAII 483 (515)
T ss_pred HHhHhccceEE-EEcCCeEEEecCCccchHHHH----HHHHHHHHHhhhhccCcEEeecccCCCcchHHHHHHcCCeEEE
Confidence 44667999995 333332222333333332221 122222233444556999999999999887766644
Q ss_pred CCHHHHHhHHHHHHHHHh
Q psy8475 89 LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 89 p~~eeirDL~FAwkvvKy 106 (233)
+|++++||-.++..|.+|
T Consensus 484 qPGGSirD~eVI~aAde~ 501 (515)
T COG0138 484 QPGGSIRDQEVIAAADEH 501 (515)
T ss_pred CCCCccccHHHHHHHHhc
Confidence 899999999999999987
No 12
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=94.68 E-value=0.012 Score=58.28 Aligned_cols=41 Identities=41% Similarity=0.554 Sum_probs=36.6
Q ss_pred cCcEEEeecCCCcCcccccccCC-------CCHHHHHhHHHHHHHHHh
Q psy8475 66 LHGVSVASDAFFPFRDNIDRAVL-------LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 66 lGGvLVQsDdf~pf~dVVTkak~-------p~~eeirDL~FAwkvvKy 106 (233)
..|..+.||+||||.|.|..+.+ +|++++||-.++..|.+|
T Consensus 450 ~~G~vlASDAFFPF~D~ve~aa~aGi~aIiQPGGSiRD~evI~aa~e~ 497 (511)
T TIGR00355 450 AKGSSLASDAFFPFRDGVEEAAAAGITCIIQPGGSMRDEDSIWAADEH 497 (511)
T ss_pred ccCcEEEeccccCCCccHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHh
Confidence 47999999999999888876654 899999999999999987
No 13
>PLN02891 IMP cyclohydrolase
Probab=92.69 E-value=0.047 Score=54.49 Aligned_cols=41 Identities=39% Similarity=0.626 Sum_probs=36.3
Q ss_pred cCcEEEeecCCCcCc--ccccccCC-------CCHHHHHhHHHHHHHHHh
Q psy8475 66 LHGVSVASDAFFPFR--DNIDRAVL-------LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 66 lGGvLVQsDdf~pf~--dVVTkak~-------p~~eeirDL~FAwkvvKy 106 (233)
+.|..+.||+||||. |.|..+.+ +|++++||-.++..|.+|
T Consensus 484 ~~G~vlASDAFFPF~~~D~ve~aa~~Gv~aIIQPGGSiRD~evI~aane~ 533 (547)
T PLN02891 484 AKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKY 533 (547)
T ss_pred cCCeEEEecccCCCCCCccHHHHHHhCCEEEECCCCCCCcHHHHHHHHHh
Confidence 579999999999995 88877654 899999999999999987
No 14
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=92.25 E-value=0.02 Score=56.86 Aligned_cols=87 Identities=31% Similarity=0.347 Sum_probs=52.1
Q ss_pred CCcccccchhhhhhhcCCCCCCCchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEeecCCCcCcccccccCC------
Q psy8475 15 GVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRDNIDRAVL------ 88 (233)
Q Consensus 15 ~~kr~~~~Naid~y~~~~~~~~~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQsDdf~pf~dVVTkak~------ 88 (233)
-+-+.-|||+| +|+.+...-..+-+|-.+.-.. .+.-+-..++...++|..+.||+||||.|.|....+
T Consensus 406 ~v~K~vkSNaI-Vvvkd~~~vgIgaGQ~sRvd~t----~~Ai~rag~~~~~~~gav~aSDafFPf~Dtie~aa~~Gv~aI 480 (513)
T PRK00881 406 KVVKHVKSNAI-VYAKDGQTVGIGAGQMSRVDSA----RIAIEKAGDAGLDLKGAVLASDAFFPFRDGVEAAAKAGITAI 480 (513)
T ss_pred HHHHhcCCCcE-EEEeCCeEEEECCCCcchHHHH----HHHHHHHHHhccCcCCeEEEeeCCCCchhHHHHHHHcCCeEE
Confidence 34566789999 7776543222332222221111 011111112223357888889999999776655543
Q ss_pred -CCHHHHHhHHHHHHHHHh
Q psy8475 89 -LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 89 -p~~eeirDL~FAwkvvKy 106 (233)
+|+++++|-.+...|.+|
T Consensus 481 iqPgGSirD~evI~aAne~ 499 (513)
T PRK00881 481 IQPGGSIRDEEVIAAADEH 499 (513)
T ss_pred EeCCCCCChHHHHHHHHHc
Confidence 677799999999999988
No 15
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=77.21 E-value=4.8 Score=35.95 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=53.4
Q ss_pred CcEEEee-cCCCcC----cccccccCCCCHHHHHhHHHHHHHHHhhccceE---EEeeCCeEEEecCCCCchhHHHHHHH
Q psy8475 67 HGVSVAS-DAFFPF----RDNIDRAVLLPEFAIRDLTVATIALKYTQSNSV---VYAKNGQVIGIGAGQQSRIHCTRLAG 138 (233)
Q Consensus 67 GGvLVQs-Ddf~pf----~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaI---v~ak~g~tvGiGaGQ~sRv~a~~~A~ 138 (233)
.|+-+-+ .++.|. .-+.|+++ |++++++|..++|.+.+.+-.=-| |++++|.+|++-+ +.-+-.++
T Consensus 65 ~G~~vv~~~~~~p~Ll~~~G~lt~~~-p~~~~~~Di~~g~~ia~~lg~lDiGQ~vVV~~g~VlAVEa-----~EGTD~~i 138 (214)
T PF06230_consen 65 EGFKVVGAHEYLPDLLAPEGVLTGRK-PSKEELADIEFGFEIAKALGRLDIGQAVVVKDGRVLAVEA-----IEGTDAMI 138 (214)
T ss_pred CCCEEEcHHHhhHHhcCCCccccCCC-CCHHHHHHHHHHHHHHHHhcccCCCceEEEECCEEEEEec-----cccHHHHH
Confidence 3666654 555442 45778888 999999999999999998865443 7789999999976 45566777
Q ss_pred Hhhhh
Q psy8475 139 DKVDN 143 (233)
Q Consensus 139 ~kA~~ 143 (233)
.+++.
T Consensus 139 ~R~~~ 143 (214)
T PF06230_consen 139 RRAGE 143 (214)
T ss_pred HHHHH
Confidence 77763
No 16
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=70.98 E-value=3.1 Score=37.57 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 97 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 97 L~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
...|++++.|+++ |++||+|.|-|-.--.=+++
T Consensus 8 ~~aa~~A~~~v~~--------gmviGlGTGST~~~fI~~Lg 40 (227)
T COG0120 8 KAAAKAALEYVKD--------GMVIGLGTGSTAAYFIEALG 40 (227)
T ss_pred HHHHHHHHHHhcC--------CCEEEEcCcHHHHHHHHHHH
Confidence 4689999999998 89999999988765544444
No 17
>PLN02384 ribose-5-phosphate isomerase
Probab=68.93 E-value=4.3 Score=37.38 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=21.8
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchh
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 131 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv 131 (233)
..|.++++||+| |++||+|+|.|...
T Consensus 38 ~aA~~A~~~V~~--------gmvVGLGTGSTv~~ 63 (264)
T PLN02384 38 IAAYKAVEFVES--------GMVLGLGTGSTAKH 63 (264)
T ss_pred HHHHHHHHhccC--------CCEEEecchHHHHH
Confidence 578888899875 68999999998773
No 18
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=67.37 E-value=5.1 Score=36.10 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchh
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 131 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv 131 (233)
..|.++++||+| |++||+|.|.|...
T Consensus 10 ~aa~~A~~~V~~--------gmvvGLGTGSTv~~ 35 (228)
T PRK13978 10 MTLNDVLSQING--------DMTLGIGTGSTMEL 35 (228)
T ss_pred HHHHHHHHhCCC--------CCEEEeCchHHHHH
Confidence 578888888875 68999999998763
No 19
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=42.50 E-value=17 Score=30.26 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.8
Q ss_pred cCCCCchhHHHHHHHHhhh
Q psy8475 124 GAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 124 GaGQ~sRv~a~~~A~~kA~ 142 (233)
|+|.+...+|+++||.+|-
T Consensus 69 GGG~sgQa~Air~aIaraL 87 (134)
T PRK00474 69 GGGIMGQADAARTAIARGL 87 (134)
T ss_pred cCChhHHHHHHHHHHHHHH
Confidence 7799999999999999994
No 20
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=41.73 E-value=13 Score=30.38 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=17.9
Q ss_pred cCCCCchhHHHHHHHHhhh
Q psy8475 124 GAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 124 GaGQ~sRv~a~~~A~~kA~ 142 (233)
|+|+++...|+++||.||-
T Consensus 60 GGG~~gQa~Air~aiaraL 78 (121)
T PF00380_consen 60 GGGISGQAGAIRLAIARAL 78 (121)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred cCcEeeehHHHHHHHHHHH
Confidence 7899999999999999995
No 21
>CHL00079 rps9 ribosomal protein S9
Probab=40.85 E-value=19 Score=29.87 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.3
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.++...|+++||.+|-
T Consensus 68 ~GGG~sgQa~Air~aIaraL 87 (130)
T CHL00079 68 KGGGLTGQAEAIRLGLARAL 87 (130)
T ss_pred EcCChhHHHHHHHHHHHHHH
Confidence 37899999999999999994
No 22
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=39.33 E-value=16 Score=30.21 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=18.3
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.++..+|+++||.+|-
T Consensus 68 ~GGG~sgQa~Air~aiaraL 87 (130)
T PRK00132 68 KGGGISGQAGAIRHGIARAL 87 (130)
T ss_pred EcCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999994
No 23
>PRK05439 pantothenate kinase; Provisional
Probab=39.03 E-value=22 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=34.9
Q ss_pred CchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEee--cCCCcC
Q psy8475 37 MDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVAS--DAFFPF 79 (233)
Q Consensus 37 ~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQs--Ddf~pf 79 (233)
..+++|.++-.. .|-+||++|-..+++...-+.+++ +-..|.
T Consensus 13 ~~r~~w~~l~~~-~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~pl 56 (311)
T PRK05439 13 FSREQWAALRDS-TPLTLTEEELERLRGLNDPISLEEVAEIYLPL 56 (311)
T ss_pred ECHHHHHHHHhc-CCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 678999998886 999999999999998888888877 334454
No 24
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=37.91 E-value=33 Score=29.17 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhccc---eEEEeeCCeEEEecCCCC-chhHHHHHHHHhhh
Q psy8475 96 DLTVATIALKYTQSN---SVVYAKNGQVIGIGAGQQ-SRIHCTRLAGDKVD 142 (233)
Q Consensus 96 DL~FAwkvvKyvkSN---aIv~ak~g~tvGiGaGQ~-sRv~a~~~A~~kA~ 142 (233)
.+..||+..=.|..| +-|++|||++||.|.=+. -.=+|-..|+.+|+
T Consensus 13 Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag 63 (146)
T COG0117 13 ALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAG 63 (146)
T ss_pred HHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHcC
Confidence 467888888888888 568999999999985321 12256667777775
No 25
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=37.36 E-value=32 Score=30.18 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEe
Q psy8475 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGI 123 (233)
Q Consensus 89 p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGi 123 (233)
|+-..-.++.+.....+| +|||++..+|.+|||
T Consensus 141 P~Vs~~~~l~vI~~LL~~--~~AVlV~e~G~~vGI 173 (187)
T COG3620 141 PTVSPDESLNVISQLLEE--HPAVLVVENGKVVGI 173 (187)
T ss_pred CcCCCCCCHHHHHHHHhh--CCeEEEEeCCceEEE
Confidence 333344578888888887 799999999999998
No 26
>PLN00210 40S ribosomal protein S16; Provisional
Probab=36.73 E-value=21 Score=30.01 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=17.9
Q ss_pred cCCCCchhHHHHHHHHhhh
Q psy8475 124 GAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 124 GaGQ~sRv~a~~~A~~kA~ 142 (233)
|+|.+...+|+++||.+|-
T Consensus 69 GGG~sgQa~Air~aiaraL 87 (141)
T PLN00210 69 GGGHTSQIYAIRQSIAKAL 87 (141)
T ss_pred cCCHhHHHHHHHHHHHHHH
Confidence 7899999999999999994
No 27
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=34.45 E-value=21 Score=30.17 Aligned_cols=20 Identities=30% Similarity=0.145 Sum_probs=18.3
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|++...+|+++||.+|-
T Consensus 74 ~GGG~sgQA~Air~aIaRAL 93 (147)
T PTZ00086 74 RGGGQVAQAYAIRQAIAKGL 93 (147)
T ss_pred EcCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999994
No 28
>PF14080 DUF4261: Domain of unknown function (DUF4261)
Probab=33.06 E-value=29 Score=25.57 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCHHHHHhHHHHHHHHHhhccceEEEeeCCeEE-EecCCCCchh
Q psy8475 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVI-GIGAGQQSRI 131 (233)
Q Consensus 89 p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tv-GiGaGQ~sRv 131 (233)
.+++++. .|..-++-|+=.|.++ .++|.|| |++.+|.-++
T Consensus 20 ~~p~ev~--~~l~~ia~Yil~~~~~-l~dGdTi~G~~~~~~~~~ 60 (77)
T PF14080_consen 20 LDPEEVY--NFLYNIAYYILENGVV-LKDGDTISGFSEEQKWKI 60 (77)
T ss_pred CCHHHHH--HHHHHHHHHHHcCCCc-cCCCCeeccCCCCceEEE
Confidence 4555554 5777888899888877 6889999 9999776544
No 29
>KOG1753|consensus
Probab=32.69 E-value=26 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEecCCCCchhHHHHHHHHhhh
Q psy8475 121 IGIGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 121 vGiGaGQ~sRv~a~~~A~~kA~ 142 (233)
-=-|+|.+|+|-|+++|+.||-
T Consensus 70 ~~~ggghvsqiyairqa~~kal 91 (145)
T KOG1753|consen 70 RVKGGGHVSQIYAIRQAIAKAL 91 (145)
T ss_pred EEecCchHHHHHHHHHHhhHHH
Confidence 3348899999999999999994
No 30
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=31.84 E-value=31 Score=28.60 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.7
Q ss_pred cCCCCchhHHHHHHHHhhh
Q psy8475 124 GAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 124 GaGQ~sRv~a~~~A~~kA~ 142 (233)
|+|.+...+|+++||.+|-
T Consensus 65 GGG~sgQa~Air~aIaraL 83 (130)
T TIGR03627 65 GGGIMGQADAARTAIARGL 83 (130)
T ss_pred cCChhHHHHHHHHHHHHHH
Confidence 6799999999999999994
No 31
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=28.81 E-value=57 Score=28.99 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=23.2
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++|++ +|++||||+|-|..--+-.++
T Consensus 9 ~IA~~Aa~lI~--------dg~~IgLgsGST~~~l~~~L~ 40 (220)
T PRK00702 9 AAAEAAAEYVE--------DGMIVGLGTGSTAAYFIDALG 40 (220)
T ss_pred HHHHHHHHhCC--------CCCEEEECCcHHHHHHHHHHH
Confidence 67888888886 468999999988754333443
No 32
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=27.48 E-value=1.1e+02 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=42.1
Q ss_pred ccccccCCCCHHHHHhHHHHHHHHHhhc-cceEEEeeCCeEEEecCCCCchhHHHHHHHHhh
Q psy8475 81 DNIDRAVLLPEFAIRDLTVATIALKYTQ-SNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 141 (233)
Q Consensus 81 dVVTkak~p~~eeirDL~FAwkvvKyvk-SNaIv~ak~g~tvGiGaGQ~sRv~a~~~A~~kA 141 (233)
+...... ++=.-+-|+.-||.+++-.. ..|.|+.|.+.--|++.| +.+..|.+||
T Consensus 107 ~qL~GKe-LSyNN~lD~daA~~lv~ef~~~pa~vivKH~nPCGvA~~-----~~~~eAy~~A 162 (315)
T PF01808_consen 107 EQLQGKE-LSYNNLLDADAAWRLVREFDDEPACVIVKHNNPCGVAIG-----DTLLEAYEKA 162 (315)
T ss_dssp EEEESS----HHHHHHHHHHHHHHHCCCHSCEEEEEETTEEEEEEEE-----SHHHHHHHHH
T ss_pred HHhcCcC-cccCCchhHHHHHHHHHHcCCCCeEEEEecCccceeEec-----CCHHHHHHHH
Confidence 4443334 88889999999999999999 999999999999999888 3455555555
No 33
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=27.17 E-value=1.4e+02 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=26.1
Q ss_pred ceEEEeeCCeEEEecCCCCchhHHHHHHHHhhhh
Q psy8475 110 NSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDN 143 (233)
Q Consensus 110 NaIv~ak~g~tvGiGaGQ~sRv~a~~~A~~kA~~ 143 (233)
-++++.+||..|.. ...++.++.++|..-|..
T Consensus 17 ~~~l~~~dG~~i~~--~~~~~~~~~~~aa~~a~~ 48 (91)
T PF03259_consen 17 GAVLVDKDGLVIAS--SGIDDDDAEKLAAMAASL 48 (91)
T ss_dssp EEEEEETTSEEEEE--TSSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEE--ecCCcccHHHHHHHHHHH
Confidence 47788899999999 777888988888777653
No 34
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=25.42 E-value=66 Score=28.18 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=21.9
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRL 136 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~ 136 (233)
..|.++++|++. |++||||+|-|..--+-.+
T Consensus 4 ~IA~~A~~~I~~--------g~~I~ldsGST~~~l~~~L 34 (213)
T cd01398 4 AAARAAVDYVED--------GMVIGLGTGSTVAYFIEAL 34 (213)
T ss_pred HHHHHHHHhCCC--------CCEEEECchHHHHHHHHHH
Confidence 467777777765 7899999998875433333
No 35
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=24.43 E-value=41 Score=23.74 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.2
Q ss_pred hccceEEEeeCCeEEEe-----cCCCCchhH
Q psy8475 107 TQSNSVVYAKNGQVIGI-----GAGQQSRIH 132 (233)
Q Consensus 107 vkSNaIv~ak~g~tvGi-----GaGQ~sRv~ 132 (233)
+++|.|-+++||+..-| |=|+++-+|
T Consensus 7 ~~~ngiYiV~~G~v~~i~pP~sGfGeq~~~w 37 (50)
T PF13128_consen 7 VKENGIYIVKDGEVTFIEPPESGFGEQVIVW 37 (50)
T ss_pred ccCCeEEEEECCeEEEcCCCCCCcceEEEEE
Confidence 67999999999998777 677776554
No 36
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=23.25 E-value=88 Score=27.82 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRL 136 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~ 136 (233)
..|.++++|++ +|++||||+|-|..--+-.+
T Consensus 4 ~IA~~A~~~I~--------~g~~I~ldsGST~~~~~~~L 34 (218)
T TIGR00021 4 AAAEAAAEYVE--------DGMVVGLGTGSTVAYFIEAL 34 (218)
T ss_pred HHHHHHHHhCC--------CCCEEEECCcHHHHHHHHHH
Confidence 46777777776 56889999998875333333
No 37
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=21.71 E-value=1.1e+02 Score=29.01 Aligned_cols=48 Identities=23% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHHHHhh
Q psy8475 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKV 141 (233)
Q Consensus 89 p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A~~kA 141 (233)
++=.-+-|+.-||.+++-....|.|+.|..---|++.|.+ +..|-.||
T Consensus 112 LSyNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~-----~~~Ay~kA 159 (311)
T smart00798 112 LSYNNILDADAALELVKEFDEPACVIVKHANPCGVAVGDT-----LAEAYRKA 159 (311)
T ss_pred cCCcchhchHHHHHHHHhcCCCcEEEEecCCcceeecCCC-----HHHHHHHH
Confidence 6777789999999999999999999999999999999853 44455555
No 38
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=21.34 E-value=1.4e+02 Score=24.11 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=25.0
Q ss_pred eEEEeeCCeEEEecCCCCc--------------------------hhHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQS--------------------------RIHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~s--------------------------Rv~a~~~A~~kA~ 142 (233)
+-||+++|+.||.|-.+.. -++|-..|+.+|.
T Consensus 23 GAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~ 80 (131)
T cd01286 23 GAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAA 80 (131)
T ss_pred EEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 3467788999999977753 4788888888886
No 39
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=65 Score=26.92 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=18.3
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|-+...+|+|+||.||-
T Consensus 68 ~GGG~~GQA~AiR~gIaRAL 87 (130)
T COG0103 68 KGGGISGQAGAIRHGIARAL 87 (130)
T ss_pred ecCCchHHHHHHHHHHHHHH
Confidence 47899999999999999995
No 40
>KOG3075|consensus
Probab=20.80 E-value=48 Score=30.69 Aligned_cols=22 Identities=45% Similarity=0.747 Sum_probs=15.7
Q ss_pred CCeEEEecCCCCchhHHHHHHHHhhhh
Q psy8475 117 NGQVIGIGAGQQSRIHCTRLAGDKVDN 143 (233)
Q Consensus 117 ~g~tvGiGaGQ~sRv~a~~~A~~kA~~ 143 (233)
+|+.+|||+|-+. ..|+++-+.
T Consensus 42 ~g~ViGiGsGstv-----~~~v~~i~q 63 (261)
T KOG3075|consen 42 NGMVIGIGSGSTV-----VYAVDRIGQ 63 (261)
T ss_pred CCeEEEecCccHH-----HHHHHHHHH
Confidence 6899999999864 445555443
No 41
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.79 E-value=1.8e+02 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=37.2
Q ss_pred cccccccCCCCHHHHHhHHHHHHHHHhhccceE---EEeeCCeEEEec
Q psy8475 80 RDNIDRAVLLPEFAIRDLTVATIALKYTQSNSV---VYAKNGQVIGIG 124 (233)
Q Consensus 80 ~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaI---v~ak~g~tvGiG 124 (233)
..+.|+.. |+.+.++|...|..+.++.-+==| +++++|.+|++=
T Consensus 140 ~g~lt~~~-P~~~d~~dI~~g~~aA~~lg~lDVGQ~aV~~~g~vvAvE 186 (279)
T COG3494 140 TGPLTKKE-PDNEDLRDIELGIEAANALGALDVGQGAVVVGGRVVAVE 186 (279)
T ss_pred CCcccCCC-CChhhHHHHHHHHHHHHHhccccccceeEEeCCeEEEEe
Confidence 56788888 999999999999999998866433 678999999993
Done!