Query psy8475
Match_columns 233
No_of_seqs 309 out of 1121
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:49:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8m_A Aicar transformylase-IM 100.0 7.5E-62 2.6E-66 471.2 11.8 174 59-233 376-554 (593)
2 3zzm_A Bifunctional purine bio 100.0 2.9E-39 9.8E-44 310.3 8.3 108 59-233 370-484 (523)
3 1zcz_A Bifunctional purine bio 100.0 3.7E-39 1.3E-43 305.0 8.7 108 59-233 317-425 (464)
4 4ehi_A Bifunctional purine bio 100.0 5.3E-39 1.8E-43 308.8 9.4 111 59-233 380-495 (534)
5 1g8m_A Aicar transformylase-IM 99.9 2.1E-25 7.2E-30 216.7 0.9 106 1-107 468-580 (593)
6 4ggi_A UDP-2,3-diacylglucosami 99.7 8.7E-18 3E-22 150.6 3.0 75 67-142 121-203 (283)
7 4ehi_A Bifunctional purine bio 94.5 0.0057 2E-07 59.4 -0.3 41 66-106 473-520 (534)
8 3zzm_A Bifunctional purine bio 94.3 0.0067 2.3E-07 58.8 -0.5 42 65-106 461-509 (523)
9 1zcz_A Bifunctional purine bio 94.0 0.008 2.7E-07 57.4 -0.5 40 67-106 404-450 (464)
10 3ixq_A Ribose-5-phosphate isom 71.2 2.1 7.2E-05 37.2 2.5 32 98-137 9-40 (226)
11 4gmk_A Ribose-5-phosphate isom 71.1 3.1 0.0001 36.3 3.6 33 97-137 9-41 (228)
12 3uw1_A Ribose-5-phosphate isom 63.0 3.7 0.00013 35.9 2.5 33 97-133 16-48 (239)
13 3l7o_A Ribose-5-phosphate isom 53.9 11 0.00037 32.6 3.8 32 98-137 7-38 (225)
14 2f8m_A Ribose 5-phosphate isom 47.8 19 0.00063 31.4 4.4 32 98-137 15-47 (244)
15 3kwm_A Ribose-5-phosphate isom 45.4 8.1 0.00028 33.3 1.7 26 97-130 14-39 (224)
16 3qd7_X Uncharacterized protein 43.9 13 0.00046 29.5 2.6 33 120-156 82-114 (137)
17 3hhe_A Ribose-5-phosphate isom 41.9 15 0.0005 32.5 2.8 33 97-137 29-61 (255)
18 1z3a_A TRNA-specific adenosine 41.8 26 0.00088 28.5 4.1 31 111-142 33-68 (168)
19 2v2f_A Penicillin binding prot 40.2 14 0.00049 20.8 1.7 21 108-130 4-25 (26)
20 1xtz_A Ribose-5-phosphate isom 39.5 29 0.00098 30.5 4.3 35 97-137 23-58 (264)
21 2nx8_A TRNA-specific adenosine 36.2 38 0.0013 27.8 4.3 32 111-142 39-75 (179)
22 1lk5_A D-ribose-5-phosphate is 35.4 20 0.00067 30.7 2.5 32 98-137 9-40 (229)
23 1uj6_A Ribose 5-phosphate isom 33.5 23 0.0008 30.2 2.7 27 98-132 11-37 (227)
24 1m0s_A Ribose-5-phosphate isom 33.1 22 0.00077 30.2 2.5 30 98-135 9-38 (219)
25 2a8n_A Cytidine and deoxycytid 32.3 47 0.0016 25.9 4.1 31 111-142 28-63 (144)
26 2pjm_A Ribose-5-phosphate isom 31.8 24 0.00082 30.3 2.5 32 98-137 9-40 (226)
27 1wwr_A TRNA adenosine deaminas 31.0 52 0.0018 26.8 4.3 32 111-142 46-82 (171)
28 1bgk_A BGK; neurotoxin, potass 30.8 7.7 0.00026 24.6 -0.6 14 98-111 5-18 (37)
29 1wkq_A Guanine deaminase; doma 30.5 28 0.00097 28.2 2.6 45 97-142 19-71 (164)
30 3u5c_Q RP61R, 40S ribosomal pr 28.4 18 0.00062 29.3 1.0 20 123-142 70-89 (143)
31 3j20_K 30S ribosomal protein S 28.2 18 0.00063 29.0 1.0 20 123-142 67-86 (135)
32 2zqe_A MUTS2 protein; alpha/be 27.8 22 0.00076 25.6 1.4 20 137-156 46-65 (83)
33 2zkq_i 40S ribosomal protein S 27.6 19 0.00066 29.3 1.0 20 123-142 73-92 (146)
34 2xzm_I RPS16E; ribosome, trans 27.3 19 0.00066 29.3 1.0 20 123-142 72-91 (145)
35 2vqe_I 30S ribosomal protein S 26.7 20 0.0007 28.5 1.0 20 123-142 66-85 (128)
36 1o8b_A Ribose 5-phosphate isom 26.3 20 0.00068 30.6 1.0 31 98-136 9-39 (219)
37 3r8n_I 30S ribosomal protein S 25.1 21 0.00072 28.4 0.9 20 123-142 65-84 (127)
38 1p6o_A Cytosine deaminase; hyd 24.8 31 0.0011 27.7 1.8 32 111-142 38-75 (161)
39 2w4l_A DCMP deaminse, deoxycyt 24.1 38 0.0013 27.8 2.2 46 97-142 17-91 (178)
40 2b3j_A TRNA adenosine deaminas 23.3 87 0.003 24.9 4.2 31 111-142 31-66 (159)
41 3adg_A F21M12.9 protein; HYL1, 22.4 1.3E+02 0.0044 20.5 4.5 29 113-141 39-67 (73)
No 1
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=100.00 E-value=7.5e-62 Score=471.24 Aligned_cols=174 Identities=55% Similarity=0.857 Sum_probs=164.0
Q ss_pred hhhhhhccCcEEEeecCCC---c-Cc-ccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 59 KADFIYTLHGVSVASDAFF---P-FR-DNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 59 k~e~rsvlGGvLVQsDdf~---p-f~-dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
..+++++.||+|+|+.+.. + .| ++||+++.||+++++||+|||+++||||||||||+||||||||||||||||||
T Consensus 376 ~~e~r~v~Gg~L~Q~rd~~~~~~~~~~~vVT~~~~pt~~e~~DL~fAw~v~K~vkSNaIv~akdg~tvGiGaGQ~sRV~~ 455 (593)
T 1g8m_A 376 DNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHC 455 (593)
T ss_dssp SEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETTEEEEEECSCSCHHHH
T ss_pred CeeEEEECcEEEEECCCCCCCCHHHHHHhccCCCCcCHHHHHHHHHHHHHHHhcCcceEEEEECCeEEEECCCCCchHHH
Confidence 3688999999999994432 1 25 89999833999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCc
Q psy8475 134 TRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213 (233)
Q Consensus 134 ~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g 213 (233)
+|+|++||++|||||||+|++|||++|+||++|+|+||+|+++++...++..+|+.+|+ +.|++||++||++|+.+++|
T Consensus 456 ~rlA~~KA~~w~lr~~~~v~~~~~~~~~~r~~~~n~id~~~~~~~~~~~~~~~~~~~f~-~~p~~~t~~ek~~w~~~~~G 534 (593)
T 1g8m_A 456 TRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFE-EVPAQLTEAEKKQWIAKLTA 534 (593)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEE-ECCCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhhhhhhhcchhhhcccccchhhhhhhhcchhhhcccccccchhhhhhhhhhc-cccccccHHHHHhhhcccCc
Confidence 99999999999999999999999999999999999999999999888899999999999 99999999999999999999
Q ss_pred eEEeccccccCCCccccccC
Q psy8475 214 VSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 214 ~~l~SDaFfPF~D~vd~A~~ 233 (233)
+||+|||||||+||||+|++
T Consensus 535 ~vlaSDAFFPF~D~v~~A~~ 554 (593)
T 1g8m_A 535 VSLSSDAFFPFRDNVDRAKR 554 (593)
T ss_dssp EEEEESSCCSSTHHHHHHHT
T ss_pred eEEEeccccCCchhHHHHHH
Confidence 99999999999999999975
No 2
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=100.00 E-value=2.9e-39 Score=310.27 Aligned_cols=108 Identities=26% Similarity=0.381 Sum_probs=99.3
Q ss_pred hhhhhhccCcEEEeecCCCc-------CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchh
Q psy8475 59 KADFIYTLHGVSVASDAFFP-------FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRI 131 (233)
Q Consensus 59 k~e~rsvlGGvLVQsDdf~p-------f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv 131 (233)
..+++++.||+|+|+.|..+ .|++||+++ ||+++++||+|||++|||||||||||+|||||||||+||||||
T Consensus 370 ~~e~r~v~GG~LvQ~~D~~~~~~~~~~~~~vvT~~~-pt~~e~~dL~fAw~v~K~vkSNAIv~akdg~tvGiGaGQ~sRV 448 (523)
T 3zzm_A 370 GSELRPISGGLLIQQSDQLDAHGDNPANWTLATGSP-ADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRV 448 (523)
T ss_dssp CEEEEEETTEEEEEECCCSCSGGGSGGGCEEEESSC-CCHHHHHHHHHHHHHGGGSCSSCEEEEETTEEEEEECSCSSHH
T ss_pred CeEEEEEeeeEEEECCCCcccccCCHHHCeeccCCC-cCHHHHHHHHHHHHHHHhccCceEEEEECCeEEEECCCCcchH
Confidence 47899999999999955332 289999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhccc
Q psy8475 132 HCTRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTL 211 (233)
Q Consensus 132 ~a~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l 211 (233)
||+|+|++||+ .++
T Consensus 449 ~s~r~A~~kAg------------------------------------------------------------------~~~ 462 (523)
T 3zzm_A 449 DAARLAVERGG------------------------------------------------------------------ERV 462 (523)
T ss_dssp HHHHHHHHHHG------------------------------------------------------------------GGC
T ss_pred HHHHHHHHHhc------------------------------------------------------------------ccc
Confidence 99999999996 357
Q ss_pred CceEEeccccccCCCccccccC
Q psy8475 212 HGVSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 212 ~g~~l~SDaFfPF~D~vd~A~~ 233 (233)
.|+||+|||||||+|+||+|++
T Consensus 463 ~G~vlaSDAFFPF~D~ve~aa~ 484 (523)
T 3zzm_A 463 RGAVAASDAFFPFPDGLETLAA 484 (523)
T ss_dssp TTCEEEESSCCSSHHHHHHHHH
T ss_pred CCeEEEeccCcCCCccHHHHHH
Confidence 8999999999999999999863
No 3
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=100.00 E-value=3.7e-39 Score=305.01 Aligned_cols=108 Identities=27% Similarity=0.349 Sum_probs=98.5
Q ss_pred hhhhhhccCcEEEeecCCCc-CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 59 KADFIYTLHGVSVASDAFFP-FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 59 k~e~rsvlGGvLVQsDdf~p-f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..+++++.||+|+|+.|.-+ .|++||+++ |++++++||+|||++|||||||||||+|||||||||+||||||||+|+|
T Consensus 317 ~~e~r~v~GG~LvQ~~D~~~~~~~vVT~~~-pt~~e~~DL~FAwkv~K~vKSNAIv~akdg~tvGiGaGQ~sRV~s~riA 395 (464)
T 1zcz_A 317 SWAGKMAFGSLVLSERKYPEGNFELVVGEP-LSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIA 395 (464)
T ss_dssp CEEEEEETTEEEEEECCCCCSCCEEEESCC-CCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSCSSHHHHHHHH
T ss_pred CceEEEEcCEEEEECCCCChhhceEecCCC-CCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEECCCCCchHHHHHHH
Confidence 46889999999999944333 499999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCceEEe
Q psy8475 138 GDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVA 217 (233)
Q Consensus 138 ~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g~~l~ 217 (233)
++||+. ..+|+||+
T Consensus 396 ~~kA~~------------------------------------------------------------------~~~G~vlA 409 (464)
T 1zcz_A 396 TVMAGE------------------------------------------------------------------KAKGAVAA 409 (464)
T ss_dssp HHHHGG------------------------------------------------------------------GGTTCEEE
T ss_pred HHHhhc------------------------------------------------------------------ccCCeEEE
Confidence 999971 12699999
Q ss_pred ccccccCCCccccccC
Q psy8475 218 SDAFFPFRDNIDRAVL 233 (233)
Q Consensus 218 SDaFfPF~D~vd~A~~ 233 (233)
|||||||+|+||+|++
T Consensus 410 SDAFFPF~D~v~~aa~ 425 (464)
T 1zcz_A 410 SDAFFPFPDSLEILAQ 425 (464)
T ss_dssp ESSCCSSHHHHHHHHH
T ss_pred ecccCCchhhHHHHHH
Confidence 9999999999999863
No 4
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.3e-39 Score=308.77 Aligned_cols=111 Identities=34% Similarity=0.466 Sum_probs=100.0
Q ss_pred hhhhhhccCcEEEeecCCCc-----CcccccccCCCCHHHHHhHHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 59 KADFIYTLHGVSVASDAFFP-----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 59 k~e~rsvlGGvLVQsDdf~p-----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
..++|++.||+|+|+.|... .|++||+++ ||+++++||+|||++|||||||||||+|||||||||+||||||||
T Consensus 380 ~~e~r~v~GG~LvQ~~d~~~~~~~~~~~vVT~~~-pt~~e~~DL~FAw~v~K~vKSNAIv~akdg~tvGiGaGQ~sRV~s 458 (534)
T 4ehi_A 380 KYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQRE-ASKEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDA 458 (534)
T ss_dssp SEEEEEETTEEEEEECCCCCTTTTTTSEECSSBC-CCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSSSCHHHH
T ss_pred CeEEEEEeeEEEEECCCCCCCCchhcceeeCCCC-CCHHHHHHHHHHHHHHHhcCCceEEEEeCCeEEEECCCCcchHHH
Confidence 57899999999999954321 378999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccccccccccccchhhhhhhccccCCCcchhhhhhccCCCCCCCCCHHHHHhhhcccCc
Q psy8475 134 TRLAGDKVDNWYMRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213 (233)
Q Consensus 134 ~~~A~~kA~~w~lr~hp~v~~l~f~~~~~r~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~l~g 213 (233)
+|+|++||++|- .++.|
T Consensus 459 ~r~A~~kA~~~g---------------------------------------------------------------~~~~G 475 (534)
T 4ehi_A 459 AKAAIAKAKEMG---------------------------------------------------------------LDLQG 475 (534)
T ss_dssp HHHHHHHHHHTT---------------------------------------------------------------CCCTT
T ss_pred HHHHHHHHHhhc---------------------------------------------------------------cCCCC
Confidence 999999998430 23689
Q ss_pred eEEeccccccCCCccccccC
Q psy8475 214 VSVASDAFFPFRDNIDRAVL 233 (233)
Q Consensus 214 ~~l~SDaFfPF~D~vd~A~~ 233 (233)
+||+|||||||+|+||+|++
T Consensus 476 ~vlASDAFFPF~D~ve~Aa~ 495 (534)
T 4ehi_A 476 CVLASEAFFPFRDSIDEASK 495 (534)
T ss_dssp CEEECSSCCCSTHHHHHHHH
T ss_pred eEEEeccccCCCccHHHHHH
Confidence 99999999999999999863
No 5
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=99.90 E-value=2.1e-25 Score=216.73 Aligned_cols=106 Identities=49% Similarity=0.784 Sum_probs=101.2
Q ss_pred CCCCCcccCCCccCCCcccccchhhhhhhcCCCCCCCchhhhhhccCCCCCCCCchhhhhhhhhccCcEEEeecCCCcCc
Q psy8475 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFR 80 (233)
Q Consensus 1 LR~hp~vl~l~fk~~~kr~~~~Naid~y~~~~~~~~~~~~~w~~~f~~~~p~~lt~~Ek~e~rsvlGGvLVQsDdf~pf~ 80 (233)
|||||+||+|||++|+||++|+|+||+|++|++++++++++|+++|++ +|++||++||.+|.+...|+.+.||+||||.
T Consensus 468 lr~~~~v~~~~~~~~~~r~~~~n~id~~~~~~~~~~~~~~~~~~~f~~-~p~~~t~~ek~~w~~~~~G~vlaSDAFFPF~ 546 (593)
T 1g8m_A 468 LRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEE-VPAQLTEAEKKQWIAKLTAVSLSSDAFFPFR 546 (593)
T ss_dssp HTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEE-CCCCCCHHHHHHHHTTCCCEEEEESSCCSST
T ss_pred hhcchhhhcccccchhhhhhhhcchhhhcccccccchhhhhhhhhhcc-ccccccHHHHHhhhcccCceEEEeccccCCc
Confidence 699999999999999999999999999999999988999999999998 9999999999999999999999999999998
Q ss_pred ccccccCC-------CCHHHHHhHHHHHHHHHhh
Q psy8475 81 DNIDRAVL-------LPEFAIRDLTVATIALKYT 107 (233)
Q Consensus 81 dVVTkak~-------p~~eeirDL~FAwkvvKyv 107 (233)
|+|..+.+ +|++++||-.++..|.+|=
T Consensus 547 D~v~~A~~aGV~aIiQPGGSiRD~evI~aane~g 580 (593)
T 1g8m_A 547 DNVDRAKRIGVQFIVAPSGSAADEVVIEACNELG 580 (593)
T ss_dssp HHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHT
T ss_pred hhHHHHHHhCCeEEECCCCCcCCHHHHHHHHHcC
Confidence 88877755 8999999999999999984
No 6
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=99.68 E-value=8.7e-18 Score=150.58 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=65.8
Q ss_pred CcEEEee-cCCCc----CcccccccCCCCHHHHHhHHHHHHHHHhhccceE---EEeeCCeEEEecCCCCchhHHHHHHH
Q psy8475 67 HGVSVAS-DAFFP----FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSV---VYAKNGQVIGIGAGQQSRIHCTRLAG 138 (233)
Q Consensus 67 GGvLVQs-Ddf~p----f~dVVTkak~p~~eeirDL~FAwkvvKyvkSNaI---v~ak~g~tvGiGaGQ~sRv~a~~~A~ 138 (233)
.|+.+.+ .++.| .+.++|+++ |++++++|+.|||+++||++||+| |+++||+|||||+||++|+++.|+|.
T Consensus 121 ~G~~vi~~~~~~p~l~~~~g~~t~~~-p~~~~~~di~~~~~v~~~~~~~digQ~vvv~~~~~~~iea~~gt~~~~~r~~~ 199 (283)
T 4ggi_A 121 EGFEIEGAHEVMGEMTLPRGRLGKVS-PAPEHMADIDKALDVAREIGRLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVAD 199 (283)
T ss_dssp TTCCCCCSHHHHHHHBCCSEESSSCC-CCGGGHHHHHHHHHHHHHHHHTTSCSEEEEETTEEEEECSSSCHHHHHHHHHH
T ss_pred CCcceechhhhhhHhhhhcCcccccC-chHHHHHHHHHHHHHHHHhhccccceeeEecCCeEEEecCccchHHHHHHHHH
Confidence 3455543 44433 278999999 999999999999999999999999 99999999999999999999999999
Q ss_pred Hhhh
Q psy8475 139 DKVD 142 (233)
Q Consensus 139 ~kA~ 142 (233)
.|+.
T Consensus 200 ~~~~ 203 (283)
T 4ggi_A 200 LPEA 203 (283)
T ss_dssp SCGG
T ss_pred HHHh
Confidence 9885
No 7
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=94.54 E-value=0.0057 Score=59.41 Aligned_cols=41 Identities=51% Similarity=0.724 Sum_probs=36.5
Q ss_pred cCcEEEeecCCCcCcccccccCC-------CCHHHHHhHHHHHHHHHh
Q psy8475 66 LHGVSVASDAFFPFRDNIDRAVL-------LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 66 lGGvLVQsDdf~pf~dVVTkak~-------p~~eeirDL~FAwkvvKy 106 (233)
+.|..+.||+||||.|+|..+.+ +|++++||-.++..|.+|
T Consensus 473 ~~G~vlASDAFFPF~D~ve~Aa~aGV~aIiQPGGSiRD~evI~aane~ 520 (534)
T 4ehi_A 473 LQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEY 520 (534)
T ss_dssp CTTCEEECSSCCCSTHHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHH
T ss_pred CCCeEEEeccccCCCccHHHHHHcCCEEEECCCCCCccHHHHHHHHHc
Confidence 47899999999999888876644 899999999999999998
No 8
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=94.26 E-value=0.0067 Score=58.80 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=36.8
Q ss_pred ccCcEEEeecCCCcCcccccccCC-------CCHHHHHhHHHHHHHHHh
Q psy8475 65 TLHGVSVASDAFFPFRDNIDRAVL-------LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 65 vlGGvLVQsDdf~pf~dVVTkak~-------p~~eeirDL~FAwkvvKy 106 (233)
.+.|..+.||+||||.|+|..+.+ +|++++||-.++..|.+|
T Consensus 461 ~~~G~vlaSDAFFPF~D~ve~aa~aGv~aIiQPGGSiRD~evI~aane~ 509 (523)
T 3zzm_A 461 RVRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKA 509 (523)
T ss_dssp GCTTCEEEESSCCSSHHHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHH
T ss_pred ccCCeEEEeccCcCCCccHHHHHHcCCEEEECCCCCCCcHHHHHHHHHc
Confidence 357899999999999887766644 899999999999999998
No 9
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=93.99 E-value=0.008 Score=57.45 Aligned_cols=40 Identities=40% Similarity=0.531 Sum_probs=35.3
Q ss_pred CcEEEeecCCCcCcccccccCC-------CCHHHHHhHHHHHHHHHh
Q psy8475 67 HGVSVASDAFFPFRDNIDRAVL-------LPEFAIRDLTVATIALKY 106 (233)
Q Consensus 67 GGvLVQsDdf~pf~dVVTkak~-------p~~eeirDL~FAwkvvKy 106 (233)
.|..+.||+||||.|.|..+.+ +|++++||-.++..|.+|
T Consensus 404 ~G~vlASDAFFPF~D~v~~aa~aGv~aIiQPGGSiRD~evI~aane~ 450 (464)
T 1zcz_A 404 KGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKAREL 450 (464)
T ss_dssp TTCEEEESSCCSSHHHHHHHHHTTCCEEEECCCCTTHHHHHHHHHHH
T ss_pred CCeEEEecccCCchhhHHHHHHhCCeEEEcCCCCcCcHHHHHHHHHc
Confidence 6999999999999877766543 899999999999999996
No 10
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=71.16 E-value=2.1 Score=37.24 Aligned_cols=32 Identities=34% Similarity=0.600 Sum_probs=24.3
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++||+ +|++||+|.|.|...---++|
T Consensus 9 ~aa~~A~~~V~--------~gmvvGlGTGSTv~~~I~~L~ 40 (226)
T 3ixq_A 9 KVAKEAVKLVK--------DGMVIGLGTGSTAALFIRELG 40 (226)
T ss_dssp HHHHHHGGGCC--------TTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CCCEEEeCcHHHHHHHHHHHH
Confidence 57899999986 578999999988764443444
No 11
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=71.10 E-value=3.1 Score=36.25 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 97 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 97 L~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
-..|.++++|||| |++||+|+|.|-..---++|
T Consensus 9 ~~aa~~A~~~V~~--------gmvvGlGTGSTv~~~i~~L~ 41 (228)
T 4gmk_A 9 QLVGTKAVEWIKD--------GMIVGLGTGSTVKYMVDALG 41 (228)
T ss_dssp HHHHHHHGGGCCT--------TCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--------CCEEEECchHHHHHHHHHHH
Confidence 4578999999865 68999999988664443444
No 12
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=63.03 E-value=3.7 Score=35.90 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHH
Q psy8475 97 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHC 133 (233)
Q Consensus 97 L~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a 133 (233)
-..|.++++|+++| ..+|++||+|+|-|-.--.
T Consensus 16 ~~aA~~A~~~V~d~----~~~g~vIGLGtGST~~~~i 48 (239)
T 3uw1_A 16 RLVGEAAARYVTDN----VPQGAVIGVGTGSTANCFI 48 (239)
T ss_dssp HHHHHHHHHHHHHH----SCTTCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHhhcc----CcCCCEEEECccHHHHHHH
Confidence 46899999999985 3579999999997654433
No 13
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=53.95 E-value=11 Score=32.56 Aligned_cols=32 Identities=19% Similarity=0.504 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++|++ +|++||+|+|-|..--.-+++
T Consensus 7 ~iA~~A~~~V~--------dg~vIgLGsGST~~~~i~~L~ 38 (225)
T 3l7o_A 7 IAGVRAAQYVE--------DGMIVGLGTGSTAYYFVEEVG 38 (225)
T ss_dssp HHHHHHHTTCC--------TTCEEEECCSTTHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CCCEEEECCcHHHHHHHHHHH
Confidence 57888888875 689999999988765444444
No 14
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=47.79 E-value=19 Score=31.38 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.5
Q ss_pred HHHHHHHH-hhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALK-YTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvK-yvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++ |++ +|++||||+|-|..--+=.++
T Consensus 15 ~iA~~Aa~~~I~--------dg~~IgLgsGST~~~~~~~L~ 47 (244)
T 2f8m_A 15 IVAYKAVDEYVQ--------SNMTIGLGTGSTVFYVLERID 47 (244)
T ss_dssp HHHHHHHHHHCC--------TTCEEEECCSTTTHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCEEEEcChHHHHHHHHHHh
Confidence 47888888 885 789999999999876665555
No 15
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=45.36 E-value=8.1 Score=33.31 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccceEEEeeCCeEEEecCCCCch
Q psy8475 97 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSR 130 (233)
Q Consensus 97 L~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sR 130 (233)
...|.++++|++ +|++||+|+|-|.-
T Consensus 14 ~~iA~~A~~~V~--------~g~~IglgsGST~~ 39 (224)
T 3kwm_A 14 KLAATEAAKSIT--------TEITLGVGTGSTVG 39 (224)
T ss_dssp HHHHHHHHTTCC--------SSEEEEECCSHHHH
T ss_pred HHHHHHHHHhCC--------CCCEEEECCcHHHH
Confidence 467888998875 68999999997643
No 16
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=43.90 E-value=13 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=23.0
Q ss_pred EEEecCCCCchhHHHHHHHHhhhhhhhhcCCCccccc
Q psy8475 120 VIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWK 156 (233)
Q Consensus 120 tvGiGaGQ~sRv~a~~~A~~kA~~w~lr~hp~v~~l~ 156 (233)
+-|.|.|..+....+|.++ .=||++||.|+...
T Consensus 82 IHGKG~gs~~~~~vLk~~V----~~wL~~~~~V~~f~ 114 (137)
T 3qd7_X 82 IHGKGRDDKSHANIVRSYV----ARWLTEFDDVQAYC 114 (137)
T ss_dssp ECCCCSSTTSHHHHHHHHH----HHHHHTSTTEEEEE
T ss_pred EECCCCCCCCchHHHHHHH----HHHHhcCCceeEEe
Confidence 4467888777665555444 44899999997654
No 17
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=41.95 E-value=15 Score=32.45 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 97 LTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 97 L~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
-..|.++++|++ +|++||||+|-|..--.-+++
T Consensus 29 ~~iA~~A~~~V~--------dg~vIgLGsGST~~~~i~~L~ 61 (255)
T 3hhe_A 29 KMAALKALEFVE--------DDMRLGIGSGSTVNEFIPLLG 61 (255)
T ss_dssp HHHHHHHHTTCC--------TTEEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCEEEECCcHHHHHHHHHHH
Confidence 357888888886 679999999987654444444
No 18
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=41.78 E-value=26 Score=28.46 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=24.9
Q ss_pred eEEEeeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
||++ +||++||.|.-+.+. .+|-..||.+|.
T Consensus 33 AviV-~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~ 68 (168)
T 1z3a_A 33 AVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 68 (168)
T ss_dssp EEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEE-ECCEEEEEEEcccccCCCcchhHHHHHHHHHH
Confidence 5555 899999999887665 688888888885
No 19
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=40.15 E-value=14 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=16.0
Q ss_pred ccceEEEeeCCeEEE-ecCCCCch
Q psy8475 108 QSNSVVYAKNGQVIG-IGAGQQSR 130 (233)
Q Consensus 108 kSNaIv~ak~g~tvG-iGaGQ~sR 130 (233)
..++++|.+||..|+ +| ..+|
T Consensus 4 ~~ss~IYD~~g~~i~~lg--~e~R 25 (26)
T 2v2f_A 4 TTSSKIYDNKNQLIADLG--SERX 25 (26)
T ss_pred CCCCEEEeCCCCEeeecc--cccc
Confidence 456899999999888 53 3566
No 20
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=39.47 E-value=29 Score=30.52 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHHHHHHHH-hhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 97 LTVATIALK-YTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 97 L~FAwkvvK-yvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
...|.++++ |++. ++|++||||+|-|..--+=.++
T Consensus 23 ~~IA~~Aa~~~I~~------~dg~~IgLgsGST~~~~a~~L~ 58 (264)
T 1xtz_A 23 RAAAYRAVDENLKF------DDHKIIGIGSGSTVVYVAERIG 58 (264)
T ss_dssp HHHHHHHHHHHCCT------TTCCEEEECCCSSTHHHHHHHH
T ss_pred HHHHHHHHHhccCC------CCCCEEEEcChHHHHHHHHHHh
Confidence 358888988 8852 3789999999999766665554
No 21
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=36.18 E-value=38 Score=27.82 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=25.1
Q ss_pred eEEEeeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
+-||++||++||.|.-+.+. .+|-..||.+|.
T Consensus 39 GAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~ 75 (179)
T 2nx8_A 39 GCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEAN 75 (179)
T ss_dssp EEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHH
Confidence 34555899999999887764 778888888885
No 22
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=35.41 E-value=20 Score=30.73 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=24.1
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++|+ ++|++||+|+|-|..--+-.++
T Consensus 9 ~IA~~Aa~~I--------~dg~~I~LdsGST~~~~a~~L~ 40 (229)
T 1lk5_A 9 IAAKEALKFI--------EDDMVIGLGTGSTTAYFIKLLG 40 (229)
T ss_dssp HHHHHHGGGC--------CTTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------CCCCEEEEcChHHHHHHHHHHh
Confidence 5778888877 4789999999988765554444
No 23
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=33.48 E-value=23 Score=30.19 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=20.7
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIH 132 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~ 132 (233)
..|.++++|++ +|++||+|+|-|..--
T Consensus 11 ~IA~~Aa~~I~--------dg~~I~LgsGST~~~~ 37 (227)
T 1uj6_A 11 EAAHAAIAYVQ--------DGMVVGLGTGSTARYA 37 (227)
T ss_dssp HHHHHHHTTCC--------TTCEEEECCSHHHHHH
T ss_pred HHHHHHHHHCC--------CCCEEEEcCCHHHHHH
Confidence 57888888874 7899999999654443
No 24
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=33.10 E-value=22 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=22.1
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTR 135 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~ 135 (233)
..|.++++|++ +|++||||+|-|..--+-.
T Consensus 9 ~IA~~Aa~~I~--------dg~~I~LdsGST~~~la~~ 38 (219)
T 1m0s_A 9 LAAQAALQYVK--------ADRIVGVGSGSTVNCFIEA 38 (219)
T ss_dssp HHHHHHGGGCC--------TTSEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CCCEEEEcChHHHHHHHHH
Confidence 57888888874 7899999999775444333
No 25
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=32.31 E-value=47 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=24.8
Q ss_pred eEEEeeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
||++ +||++||.|.-+.+. .+|-..||.+|.
T Consensus 28 Aviv-~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~ 63 (144)
T 2a8n_A 28 AVLV-LDGRVIARSGNRTRELNDVTAHAEIAVIRMAC 63 (144)
T ss_dssp EEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEE-ECCEEEEEEECCCCCCCCCcCCHHHHHHHHHH
Confidence 4444 699999999988764 788888998885
No 26
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=31.80 E-value=24 Score=30.31 Aligned_cols=32 Identities=34% Similarity=0.600 Sum_probs=23.6
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLA 137 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~A 137 (233)
..|.++++|++ +|++||||+|-|.---+-.++
T Consensus 9 ~iA~~A~~~I~--------~g~~IglgsGST~~~~~~~L~ 40 (226)
T 2pjm_A 9 KVAKEAVKLVK--------DGMVIGLGTGSTAALFIRELG 40 (226)
T ss_dssp HHHHHHGGGCC--------TTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--------CCCEEEECCCHHHHHHHHHHH
Confidence 57788888775 689999999987755444444
No 27
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=31.00 E-value=52 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.0
Q ss_pred eEEEeeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
+-|+++||++||.|.-+.+. .+|-..||.+|.
T Consensus 46 GAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~ 82 (171)
T 1wwr_A 46 GAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEAC 82 (171)
T ss_dssp EEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHH
Confidence 34455799999999887764 778888888885
No 28
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1
Probab=30.77 E-value=7.7 Score=24.55 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=11.6
Q ss_pred HHHHHHHHhhccce
Q psy8475 98 TVATIALKYTQSNS 111 (233)
Q Consensus 98 ~FAwkvvKyvkSNa 111 (233)
.|+...|||+|||.
T Consensus 5 ~f~~~~ckh~k~~~ 18 (37)
T 1bgk_A 5 WFKETACRHAKSLG 18 (37)
T ss_dssp CSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 46778999999984
No 29
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=30.54 E-value=28 Score=28.20 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHHHHh---hccceEEEeeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 97 LTVATIALKY---TQSNSVVYAKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 97 L~FAwkvvKy---vkSNaIv~ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
+..|.+.... +.-=||++ +||++||.|.-+... .+|-..||.+|.
T Consensus 19 l~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~ 71 (164)
T 1wkq_A 19 VTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTSNDPTAHAEVTAIRKAC 71 (164)
T ss_dssp HHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCCCCcccCHHHHHHHHHH
Confidence 4455555432 12225555 899999999877654 667777777774
No 30
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=28.35 E-value=18 Score=29.28 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=18.1
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+.-..|+|+||.||-
T Consensus 70 ~GGG~sgQA~AiR~aIArAL 89 (143)
T 3u5c_Q 70 TGGGHVSQVYAIRQAIAKGL 89 (143)
T ss_dssp ESSCHHHHHHHHHHHHHHHH
T ss_pred ECCCEecHHhHHHHHHHHHH
Confidence 47899999999999999994
No 31
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.22 E-value=18 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=18.2
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+.-..|+|+||.+|-
T Consensus 67 ~GGG~~gQA~AiR~aIarAL 86 (135)
T 3j20_K 67 EGGGFMGQAEAARMAIARAL 86 (135)
T ss_dssp ECSCHHHHHHHHHHHHHHHH
T ss_pred ECCCEechHhHHHHHHHHHH
Confidence 47899999999999999994
No 32
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=27.80 E-value=22 Score=25.60 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=15.1
Q ss_pred HHHhhhhhhhhcCCCccccc
Q psy8475 137 AGDKVDNWYMRHHPNITSWK 156 (233)
Q Consensus 137 A~~kA~~w~lr~hp~v~~l~ 156 (233)
++.++-.=||++||.|++..
T Consensus 46 vLr~~V~~~L~~~~~V~~f~ 65 (83)
T 2zqe_A 46 ALRQAIREALRRDKRVESFA 65 (83)
T ss_dssp HHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHhcCCceeEEE
Confidence 56666666999999997654
No 33
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.55 E-value=19 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.2
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+....|+|+||.+|-
T Consensus 73 ~GGG~sgQA~AiR~aIArAL 92 (146)
T 2zkq_i 73 KGGGHVAQIYAIRQSISKAL 92 (146)
T ss_dssp ESSCHHHHHHHHHHHHHHHH
T ss_pred EcCCeehHHHHHHHHHHHHH
Confidence 47899999999999999994
No 34
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=27.25 E-value=19 Score=29.25 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=18.1
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+....|+|+||.+|-
T Consensus 72 ~GGG~sgQA~AiR~aIArAL 91 (145)
T 2xzm_I 72 RGSGYTSQVYAIRQALSKGI 91 (145)
T ss_dssp CCSSHHHHHHHHHHHHHHHH
T ss_pred EcCCeecHHHHHHHHHHHHH
Confidence 36799999999999999994
No 35
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=26.68 E-value=20 Score=28.49 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=18.2
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+....|+|+||.+|-
T Consensus 66 ~GGG~sgQA~AiR~gIarAL 85 (128)
T 2vqe_I 66 RGGGKSGQIDAIKLGIARAL 85 (128)
T ss_dssp ESSCHHHHHHHHHHHHHHHH
T ss_pred EcCCeehHHHHHHHHHHHHH
Confidence 37899999999999999994
No 36
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=26.32 E-value=20 Score=30.55 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=8.6
Q ss_pred HHHHHHHHhhccceEEEeeCCeEEEecCCCCchhHHHHH
Q psy8475 98 TVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRL 136 (233)
Q Consensus 98 ~FAwkvvKyvkSNaIv~ak~g~tvGiGaGQ~sRv~a~~~ 136 (233)
..|.++++|+ ++|++||||+|-|.---+-.+
T Consensus 9 ~IA~~Aa~lI--------~dg~~I~LdsGST~~~la~~L 39 (219)
T 1o8b_A 9 AVGWAALQYV--------QPGTIVGVGTGSTAAHFIDAL 39 (219)
T ss_dssp ----------------------CEEECCSCC--------
T ss_pred HHHHHHHHhC--------CCCCEEEEcChHHHHHHHHHH
Confidence 3566666665 578999999999875554444
No 37
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=25.14 E-value=21 Score=28.37 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=18.2
Q ss_pred ecCCCCchhHHHHHHHHhhh
Q psy8475 123 IGAGQQSRIHCTRLAGDKVD 142 (233)
Q Consensus 123 iGaGQ~sRv~a~~~A~~kA~ 142 (233)
-|+|.+.-..|+|+||.+|-
T Consensus 65 ~GGG~~gQa~Air~aIarAL 84 (127)
T 3r8n_I 65 KGGGISGQAGAIRHGITRAL 84 (127)
T ss_dssp ESSCHHHHHHHHHHHHHTTT
T ss_pred ECCCeecHHHHHHHHHHHHH
Confidence 47899999999999999994
No 38
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=24.82 E-value=31 Score=27.71 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=25.8
Q ss_pred eEEE-eeCCeEEEecCCCCch-----hHHHHHHHHhhh
Q psy8475 111 SVVY-AKNGQVIGIGAGQQSR-----IHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~-ak~g~tvGiGaGQ~sR-----v~a~~~A~~kA~ 142 (233)
||++ .+||++||.|.-+.+. .+|-..||.+|.
T Consensus 38 AviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~ 75 (161)
T 1p6o_A 38 GCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCG 75 (161)
T ss_dssp EEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHC
T ss_pred EEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHH
Confidence 5555 3999999999887653 788899999996
No 39
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=24.10 E-value=38 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccc-----eEEEeeCCeEEEecCCCCc------------------------hhHHHHHHHHhhh
Q psy8475 97 LTVATIALKYTQSN-----SVVYAKNGQVIGIGAGQQS------------------------RIHCTRLAGDKVD 142 (233)
Q Consensus 97 L~FAwkvvKyvkSN-----aIv~ak~g~tvGiGaGQ~s------------------------Rv~a~~~A~~kA~ 142 (233)
|..|....+..++. ||++.+||++||.|.-+.. -++|-..||.+|.
T Consensus 17 M~~A~~~A~~s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~ 91 (178)
T 2w4l_A 17 MAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN 91 (178)
T ss_dssp HHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC--
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc
Confidence 55566665544432 5666599999999864432 2788899998874
No 40
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=23.27 E-value=87 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=23.9
Q ss_pred eEEEeeCCeEEEecCCCCc-----hhHHHHHHHHhhh
Q psy8475 111 SVVYAKNGQVIGIGAGQQS-----RIHCTRLAGDKVD 142 (233)
Q Consensus 111 aIv~ak~g~tvGiGaGQ~s-----Rv~a~~~A~~kA~ 142 (233)
||+ ++||++||.|.-+.+ -.+|-..||.+|.
T Consensus 31 Avi-v~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~ 66 (159)
T 2b3j_A 31 AII-TKDDEVIARAHNLRETLQQPTAHAEHIAIERAA 66 (159)
T ss_dssp EEE-EETTEEEEEEECCHHHHTCTTCCHHHHHHHHHH
T ss_pred EEE-EECCEEEEEEECCCCCCCCCccCHHHHHHHHHH
Confidence 444 469999999987753 4678888888885
No 41
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=22.38 E-value=1.3e+02 Score=20.47 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=22.0
Q ss_pred EEeeCCeEEEecCCCCchhHHHHHHHHhh
Q psy8475 113 VYAKNGQVIGIGAGQQSRIHCTRLAGDKV 141 (233)
Q Consensus 113 v~ak~g~tvGiGaGQ~sRv~a~~~A~~kA 141 (233)
.+.-+|..+|.|.|..|+=.|-..|...|
T Consensus 39 ~v~v~g~~~~~G~G~~sKK~Aeq~AA~~a 67 (73)
T 3adg_A 39 TVILDGVRYNSLPGFFNRKAAEQSAAEVA 67 (73)
T ss_dssp EEEETTEEEECCSCBSSHHHHHHHHHHHH
T ss_pred EEEECCEEEEeeeccCCHHHHHHHHHHHH
Confidence 33447789999999778877777777776
Done!