RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8475
(233 letters)
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 172 bits (438), Expect = 1e-50
Identities = 95/144 (65%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Query: 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRH 148
LPE A+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RH
Sbjct: 411 LPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRH 470
Query: 149 HPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFI 208
HP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK +I
Sbjct: 471 HPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFE-EVPAQLTEAEKKQWI 529
Query: 209 YTLHGVSVASDAFFPFRDNIDRAV 232
L VS++SDAFFPFRDN+DRA
Sbjct: 530 AKLTAVSLSSDAFFPFRDNVDRAK 553
Score = 71.3 bits (175), Expect = 1e-14
Identities = 52/113 (46%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK
Sbjct: 468 LRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFE-EVPAQLTEAEKK 526
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRA-------VLLPEFAIRDLTVATIALKY 106
+I L VS++SDAFFPFRDN+DRA ++ P + D V +
Sbjct: 527 QWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNEL 579
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 59.0 bits (144), Expect = 2e-10
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 140
+ DL A ++ +SN+V+ AK+G +GIG+GQ SR +A
Sbjct: 352 LEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVM 398
Score = 42.1 bits (100), Expect = 8e-05
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 66 LHGVSVASDAFFPFRDNID-------RAVLLPEFAIRD 96
G ASDAFFPF D+++ +AV+ P +IRD
Sbjct: 403 AKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRD 440
Score = 41.7 bits (99), Expect = 1e-04
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 211 LHGVSVASDAFFPFRDNIDRAV 232
G ASDAFFPF D+++
Sbjct: 403 AKGAVAASDAFFPFPDSLEILA 424
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 59.0 bits (144), Expect = 2e-10
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 140
++DL +A +T+SN+VVY KNG ++ IG G SRI + A K
Sbjct: 419 LKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAK 465
Score = 44.0 bits (105), Expect = 2e-05
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 EKA-DFIYTLHGVSVASDAFFPFRDNIDRA 86
KA + L G +AS+AFFPFRD+ID A
Sbjct: 464 AKAKEMGLDLQGCVLASEAFFPFRDSIDEA 493
Score = 44.0 bits (105), Expect = 2e-05
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 203 EKA-DFIYTLHGVSVASDAFFPFRDNIDRA 231
KA + L G +AS+AFFPFRD+ID A
Sbjct: 464 AKAKEMGLDLQGCVLASEAFFPFRDSIDEA 493
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 58.6 bits (143), Expect = 2e-10
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDK 140
+ DL A A + +SN++V A +G +G+G GQ +R+ RLA ++
Sbjct: 411 LTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVER 457
Score = 41.7 bits (99), Expect = 1e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 66 LHGVSVASDAFFPFRDNIDRA 86
+ G ASDAFFPF D ++
Sbjct: 462 VRGAVAASDAFFPFPDGLETL 482
Score = 41.7 bits (99), Expect = 1e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 211 LHGVSVASDAFFPFRDNIDRA 231
+ G ASDAFFPF D ++
Sbjct: 462 VRGAVAASDAFFPFPDGLETL 482
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.054
Identities = 35/288 (12%), Positives = 71/288 (24%), Gaps = 106/288 (36%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYI--------------LGTIGKDMD--TKT--- 41
+R W K V + + I++ + L T
Sbjct: 337 IRDGLAT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 42 -WESFFDGPPPEPMT-----------EKEKADFIYTLHGVSVASDAFFPFRDNIDRAVLL 89
W D + M EK+ + ++
Sbjct: 395 IWF---DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------------------- 430
Query: 90 PEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTR----LAGDKVDN-- 143
I L+ YA + ++ I T L +D
Sbjct: 431 ------------IYLELKVKLENEYALHRSIV-----DHYNIPKTFDSDDLIPPYLDQYF 473
Query: 144 -WYMRHH-------------PNI-TSWKF--RKGVKRAEKSNAIDNYILGTIGKDMDTKT 186
++ HH + ++F +K ++ + IL T+ K
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQ---QLKF 529
Query: 187 WESFF-DGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRDNIDRAVL 233
++ + D P DF+ + + S + D + A++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICS----KYTDLLRIALM 573
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.22
Identities = 29/150 (19%), Positives = 38/150 (25%), Gaps = 76/150 (50%)
Query: 39 TKTWESFFD------------G-------P----PPEPMTEKEKADFIYTLHGVSVASDA 75
T +WESFF G P PP + + + + V S
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-------NNEGVPS-- 336
Query: 76 FFPFRDNIDRAVLLPEFAIRDLTVAT-------------------IALKYTQSNSVV--- 113
P +I +LT I+L N VV
Sbjct: 337 --------------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 114 ----YAKNGQVIGIGAGQ---QSRI-HCTR 135
Y N + A QSRI R
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.85
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 137 AGDKVDNWYMRHHPNITSWKFRKGVKRAEK 166
A ++ W R + K + A+K
Sbjct: 116 AKKDLEEWNQRQSEQVEKNK--INNRIADK 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,875,520
Number of extensions: 232494
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 20
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)