RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8475
(233 letters)
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 143 bits (362), Expect = 1e-41
Identities = 100/199 (50%), Positives = 128/199 (64%), Gaps = 4/199 (2%)
Query: 37 MDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRDNID---RAVLLPEFA 93
K P + + +Y L + ++A + + LPE A
Sbjct: 156 SKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESA 215
Query: 94 IRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNIT 153
+RDL VA+IA+KYTQSNSV YAK+GQVIGIGAGQQSRIHCTRLAGDK ++W++RHHP +
Sbjct: 216 VRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVL 275
Query: 154 SWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFIYTLHG 213
S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK +I L
Sbjct: 276 SMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEE-VPAQLTEAEKKQWIAKLTA 334
Query: 214 VSVASDAFFPFRDNIDRAV 232
VS++SDAFFPFRDN+DRA
Sbjct: 335 VSLSSDAFFPFRDNVDRAK 353
Score = 93.0 bits (230), Expect = 1e-22
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 1 MRHHPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKA 60
+RHHP + S KF+ GVKRAE SNAID Y+ GTIG+D D W++ F+ P +TE EK
Sbjct: 268 LRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEE-VPAQLTEAEKK 326
Query: 61 DFIYTLHGVSVASDAFFPFRDNIDRAV 87
+I L VS++SDAFFPFRDN+DRA
Sbjct: 327 QWIAKLTAVSLSSDAFFPFRDNVDRAK 353
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 39.4 bits (91), Expect = 2e-04
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 66 LHGVSVASDAFFPFRDNIDRAV 87
G ASDAFFPF D+++
Sbjct: 234 AKGAVAASDAFFPFPDSLEILA 255
Score = 39.4 bits (91), Expect = 2e-04
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 211 LHGVSVASDAFFPFRDNIDRAV 232
G ASDAFFPF D+++
Sbjct: 234 AKGAVAASDAFFPFPDSLEILA 255
Score = 39.0 bits (90), Expect = 3e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 89 LPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCT----RLAGDKVDNW 144
L E + DL A ++ +SN+V+ AK+G +GIG+GQ SR +AG+K
Sbjct: 178 LSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAKGA 237
Query: 145 YM 146
Sbjct: 238 VA 239
>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 25.9 bits (56), Expect = 2.5
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 107 TQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHH 149
+QS AK GQ + C ++G WY +
Sbjct: 3 SQSPRYKVAK--------RGQDVALRCDPISGHVSLFWYQQAL 37
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 25.6 bits (55), Expect = 2.7
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 107 TQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNWYMRHHPNITSWKF 157
TQ+ + GQQ + C+ ++G + +WY + + F
Sbjct: 3 TQTPRYLIKT--------RGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLF 45
>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId:
9606]}
Length = 149
Score = 25.1 bits (55), Expect = 5.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 39 TKTWESFFDGPPPEPMTEKE 58
T TW+S + P M
Sbjct: 101 TNTWQSLIEAAPESQMMPAS 120
Score = 25.1 bits (55), Expect = 5.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 184 TKTWESFFDGPPPEPMTEKE 203
T TW+S + P M
Sbjct: 101 TNTWQSLIEAAPESQMMPAS 120
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 221
Score = 25.4 bits (54), Expect = 5.8
Identities = 11/88 (12%), Positives = 19/88 (21%)
Query: 36 DMDTKTWESFFDGPPPEPMTEKEKADFIYTLHGVSVASDAFFPFRDNIDRAVLLPEFAIR 95
+ T S L G R + +
Sbjct: 91 GVSGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVL 150
Query: 96 DLTVATIALKYTQSNSVVYAKNGQVIGI 123
D A+ S + N Q++G+
Sbjct: 151 DAIQTDAAINPGNSGGALVNMNAQLVGV 178
>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
{Haemophilus influenzae [TaxId: 727]}
Length = 357
Score = 25.5 bits (55), Expect = 5.9
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 4 HPNITSWKFRKGVKRAEKSNAIDNYILGTIGKDMDTKTWESFFDGPPPEPMTEKEKADFI 63
+ + S+ +G K E+ +A L D + + KA +
Sbjct: 242 YFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDP-----SLGYENVKEALSRIKARY- 295
Query: 64 YTLHGVSVASDAFFPFRDNIDRAVLLPEFAIRDLTVATI 102
VSV +D F D LL + + DL
Sbjct: 296 ---TLVSVTTDQLFKPIDLYKSKQLLEQ-SGVDLHFYEF 330
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 24.8 bits (53), Expect = 8.2
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 79 FRDNIDRAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAG 126
+ E A+R LT + S GQ G+ +G
Sbjct: 113 TITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG 160
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 24.9 bits (53), Expect = 9.0
Identities = 11/123 (8%), Positives = 28/123 (22%), Gaps = 9/123 (7%)
Query: 85 RAVLLPEFAIRDLTVATIALKYTQSNSVVYAKNGQVIGIGAGQQSRIHCTRLAGDKVDNW 144
RA + I + + + V++ Q + G
Sbjct: 29 RAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQ 88
Query: 145 YMRHHPNITSWKFRKGVKRAEKSNAIDNYILGT--------IGKDMDTKTWESFFDGPPP 196
+ + + + D +++G + +D S +
Sbjct: 89 TVSRLCGSSMSALHTAAQAI-MTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKAS 147
Query: 197 EPM 199
M
Sbjct: 148 GMM 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 933,997
Number of extensions: 42607
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 18
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)