BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8476
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518)
pdb|3MF0|B Chain B, Crystal Structure Of Pde5a Gaf Domain (89-518)
Length = 432
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 107/238 (44%), Gaps = 65/238 (27%)
Query: 12 FQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLL 71
F YL FCGI + NAQL+E S+LE +RNQ+LL LA IFEEQ +LE ++ KI +
Sbjct: 215 FAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFM 274
Query: 72 KCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSI 131
+ ++C +F++ ED S
Sbjct: 275 QVQKCTIFIVD--------------------------------------------EDCSD 290
Query: 132 AFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS----- 183
+FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 291 SFSSVFHM---ECEELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFP 346
Query: 184 WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKISER----KPLCRRE 236
W E N + R +LC PI NG+K VIGV QL+NK+ E KP R +
Sbjct: 347 WTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRND 400
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 251 EDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS 307
ED S +FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 286 EDCSDSFSSVFHMEC---EELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSK 341
Query: 308 -----WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKVTR-----QPFT 356
W E N + R +LC PI NG+K VIGV QL+NK+ +PF
Sbjct: 342 DKRFPWTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFN 397
Query: 357 DCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQ 390
D EAF IFCGLGI NTQMYE + MAK+
Sbjct: 398 RNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKR 431
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 141 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 198
Query: 349 KVTRQ--PFTDCDVSIFEAFAIFCGLGIHNTQMYENA 383
K + FT+ D F A+ FCG+ +HN Q+YE +
Sbjct: 199 KKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETS 235
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 165 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 224
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 141 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 198
Query: 225 KIS 227
K S
Sbjct: 199 KKS 201
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 6 FERN--QVFQRYLTFCGIGIQNAQLFE 30
F RN Q + ++ FCG+GIQN Q++E
Sbjct: 396 FNRNDEQFLEAFVIFCGLGIQNTQMYE 422
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain
pdb|3LFV|B Chain B, Crystal Structure Of Unliganded Pde5a Gaf Domain
Length = 431
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 107/238 (44%), Gaps = 65/238 (27%)
Query: 12 FQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLL 71
F YL FCGI + NAQL+E S+LE +RNQ+LL LA IFEEQ +LE ++ KI +
Sbjct: 214 FAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFM 273
Query: 72 KCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSI 131
+ ++C +F++ ED S
Sbjct: 274 QVQKCTIFIVD--------------------------------------------EDCSD 289
Query: 132 AFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS----- 183
+FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 290 SFSSVFHM---ECEELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFP 345
Query: 184 WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKISER----KPLCRRE 236
W E N + R +LC PI NG+K VIGV QL+NK+ E KP R +
Sbjct: 346 WTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRND 399
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 251 EDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS 307
ED S +FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 285 EDCSDSFSSVFHMEC---EELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSK 340
Query: 308 -----WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKVTR-----QPFT 356
W E N + R +LC PI NG+K VIGV QL+NK+ +PF
Sbjct: 341 DKRFPWTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFN 396
Query: 357 DCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQ 390
D EAF IFCGLGI NTQMYE + MAK+
Sbjct: 397 RNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKR 430
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 140 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 197
Query: 349 KVTRQ--PFTDCDVSIFEAFAIFCGLGIHNTQMYENA 383
K + FT+ D F A+ FCG+ +HN Q+YE +
Sbjct: 198 KKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETS 234
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 165 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 224
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 140 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 197
Query: 225 KIS 227
K S
Sbjct: 198 KKS 200
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 6 FERN--QVFQRYLTFCGIGIQNAQLFE 30
F RN Q + ++ FCG+GIQN Q++E
Sbjct: 395 FNRNDEQFLEAFVIFCGLGIQNTQMYE 421
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 107/238 (44%), Gaps = 65/238 (27%)
Query: 12 FQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLL 71
F YL FCGI + NAQL+E S+LE +RNQ+LL LA IFEEQ +LE ++ KI +
Sbjct: 306 FAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFM 365
Query: 72 KCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSI 131
+ ++C +F++ ED S
Sbjct: 366 QVQKCTIFIVD--------------------------------------------EDCSD 381
Query: 132 AFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS----- 183
+FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 382 SFSSVFHM---ECEELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFP 437
Query: 184 WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKISER----KPLCRRE 236
W E N + R +LC PI NG+K VIGV QL+NK+ E KP R +
Sbjct: 438 WTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRND 491
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 251 EDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS 307
ED S +FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 377 EDCSDSFSSVFHMEC---EELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSK 432
Query: 308 -----WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKVTR-----QPFT 356
W E N + R +LC PI NG+K VIGV QL+NK+ +PF
Sbjct: 433 DKRFPWTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFN 488
Query: 357 DCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTF 399
D EAF IFCGLGI NTQMYE + MAKQ V L++
Sbjct: 489 RNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSY 531
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 232 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 289
Query: 349 KVTRQ--PFTDCDVSIFEAFAIFCGLGIHNTQMYENA 383
K + FT+ D F A+ FCG+ +HN Q+YE +
Sbjct: 290 KKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETS 326
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 165 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 224
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 232 IVGHVAALGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 289
Query: 225 KIS 227
K S
Sbjct: 290 KKS 292
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 6 FERN--QVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKL----ARSIFEEQSNLECL 59
F RN Q + ++ FCG+GIQN Q++E + + L++ A + EE L+ L
Sbjct: 487 FNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSL 546
Query: 60 VTKIMTEARDL 70
++ A+ L
Sbjct: 547 AAAVVPSAQTL 557
>pdb|2XSS|A Chain A, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
pdb|2XSS|B Chain B, Crystal Structure Of Gafb From The Human Phosphodiesterase
5
Length = 181
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 73/144 (50%), Gaps = 22/144 (15%)
Query: 251 EDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS 307
ED S +FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 45 EDCSDSFSSVFHMEC---EELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSK 100
Query: 308 -----WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKVTR-----QPFT 356
W E N + R +LC PI NG+K VIGV QL+NK+ +PF
Sbjct: 101 DKRFPWTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFN 156
Query: 357 DCDVSIFEAFAIFCGLGIHNTQMY 380
D EAF IFCGLGI NTQMY
Sbjct: 157 RNDEQFLEAFVIFCGLGIQNTQMY 180
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 59/123 (47%), Gaps = 21/123 (17%)
Query: 127 EDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS 183
ED S +FS+VF + E L KS +T+ H A+YV +T + LNI DV
Sbjct: 45 EDCSDSFSSVFHMEC---EELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSK 100
Query: 184 -----WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKISER----KPLC 233
W E N + R +LC PI NG+K VIGV QL+NK+ E KP
Sbjct: 101 DKRFPWTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFN 156
Query: 234 RRE 236
R +
Sbjct: 157 RND 159
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 6 FERN--QVFQRYLTFCGIGIQNAQLF 29
F RN Q + ++ FCG+GIQN Q++
Sbjct: 155 FNRNDEQFLEAFVIFCGLGIQNTQMY 180
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
IA +VA+TGQILNI D ++ D+ + F TR ILC PI N + VIGVA+L+N
Sbjct: 252 IAGHVATTGQILNIPD--AYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVN 309
Query: 349 KVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
K+ F+ D + AF+I+CG+ I ++ +Y+
Sbjct: 310 KINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 342
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 58/189 (30%)
Query: 40 QILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPG 99
Q LL++A+++F ++ L+ +I+TEAR+L E C+VFLL
Sbjct: 181 QALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLL------------------ 222
Query: 100 RVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEAL-VKSPGNTVCNT 158
D + + VF+ G E+ ++ P +
Sbjct: 223 ----------------------------DQNELVAKVFDGGVVDDESYEIRIPADQ---- 250
Query: 159 HSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIG 218
IA +VA+TGQILNI D ++ D+ + F TR ILC PI N + VIG
Sbjct: 251 -----GIAGHVATTGQILNIPD--AYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIG 303
Query: 219 VAQLINKIS 227
VA+L+NKI+
Sbjct: 304 VAELVNKIN 312
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 289 IAKYVASTGQILNIGDV---PSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQ 345
IA +VA+TGQILNI D P + R D+ + F TR ILC PI N + VIGVA+
Sbjct: 252 IAGHVATTGQILNIPDAYAHPLFYR-----GVDDSTGFRTRNILCFPIKNENQEVIGVAE 306
Query: 346 LINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
L+NK+ F+ D + AF+I+CG+ I ++ +Y+
Sbjct: 307 LVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 342
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 64/192 (33%)
Query: 40 QILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPG 99
Q LL++A+++F ++ L+ +I+TEAR+L E C+VFLL
Sbjct: 181 QALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLL------------------ 222
Query: 100 RVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEAL-VKSPGNTVCNT 158
D + + VF+ G E+ ++ P +
Sbjct: 223 ----------------------------DQNELVAKVFDGGVVDDESYEIRIPADQ---- 250
Query: 159 HSRLATIAKYVASTGQILNIGDV---PSWMREEVCNDEDEESDFTTRCILCMPIFNGQKT 215
IA +VA+TGQILNI D P + R D+ + F TR ILC PI N +
Sbjct: 251 -----GIAGHVATTGQILNIPDAYAHPLFYR-----GVDDSTGFRTRNILCFPIKNENQE 300
Query: 216 VIGVAQLINKIS 227
VIGVA+L+NKI+
Sbjct: 301 VIGVAELVNKIN 312
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
pdb|2ZMF|B Chain B, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
Length = 189
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 289 IAKYVASTGQILNIGDV---PSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQ 345
IA VA TG++LNI D P + RE D + +TTR ILC PI + + +VIGV Q
Sbjct: 92 IAGQVARTGEVLNIPDAYADPRFNREV-----DLYTGYTTRNILCXPIVS-RGSVIGVVQ 145
Query: 346 LINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
+NK++ F+ D + F+ FA+FC L +H Y
Sbjct: 146 XVNKISGSAFSKTDENNFKXFAVFCALALHCANXYH 181
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 57/195 (29%)
Query: 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSE-ASHLERIL 95
E N LL ++++ F+ ++ L+ I A++L+ +RCA+F + + E S L I
Sbjct: 10 ELNDFLLDVSKTYFDNIVAIDSLLEHIXIYAKNLVNADRCALFQVDHKNKELYSDLFDIG 69
Query: 96 ERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTV 155
E E KP+ ++ T E I FS E G
Sbjct: 70 EEK-----EGKPVFKK-------------TKE---IRFS--IEKG--------------- 91
Query: 156 CNTHSRLATIAKYVASTGQILNIGDV---PSWMREEVCNDEDEESDFTTRCILCMPIFNG 212
IA VA TG++LNI D P + RE D + +TTR ILC PI +
Sbjct: 92 ---------IAGQVARTGEVLNIPDAYADPRFNRE-----VDLYTGYTTRNILCXPIVS- 136
Query: 213 QKTVIGVAQLINKIS 227
+ +VIGV Q +NKIS
Sbjct: 137 RGSVIGVVQXVNKIS 151
>pdb|2K31|A Chain A, Solution Structure Of Cgmp-Binding Gaf Domain Of
Phosphodiesterase 5
Length = 176
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 67 IVGHVAAFGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 124
Query: 349 KVTRQ--PFTDCDVSIFEAFAIFCGLGIHNTQMYENA 383
K + FT+ D F + FCG +HN Q+YE +
Sbjct: 125 KKSGNGGTFTEKDEKDFAEYLAFCGEVLHNAQLYETS 161
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 165 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 224
I +VA+ G+ LNI D ++ + D+ + + T+ ILCMPI N ++ V+GVAQ IN
Sbjct: 67 IVGHVAAFGEPLNIKD--AYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAIN 124
Query: 225 KIS 227
K S
Sbjct: 125 KKS 127
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 12 FQRYLTFCGIGIQNAQLFEMSILEFERN 39
F YL FCG + NAQL+E S+LE +RN
Sbjct: 141 FAEYLAFCGEVLHNAQLYETSLLENKRN 168
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
pdb|1YKD|B Chain B, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
Length = 398
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 289 IAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLI 347
A VA++GQ LNI D+ D+++ + T +LCMP+FNG + +IGV QL+
Sbjct: 269 FAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLV 328
Query: 348 NKVT-------------------RQPFTDCDVSIFEAFAIFCGLGIHNTQMY 380
NK + F D EAF I G+ + N Q++
Sbjct: 329 NKKKTGEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLF 380
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 165 IAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLI 223
A VA++GQ LNI D+ D+++ + T +LCMP+FNG + +IGV QL+
Sbjct: 269 FAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLV 328
Query: 224 NK 225
NK
Sbjct: 329 NK 330
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 289 IAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLI 347
IA VA+ Q++NI D R +++ + + T +L +P+ + Q ++ V QL+
Sbjct: 82 IAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLL 141
Query: 348 NK--------------VTRQPFTDCDVSIFEAFA 367
NK + Q FT D +F+ FA
Sbjct: 142 NKLKPYSPPDALLAERIDNQGFTSADEQLFQEFA 175
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 165 IAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLI 223
IA VA+ Q++NI D R +++ + + T +L +P+ + Q ++ V QL+
Sbjct: 82 IAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLL 141
Query: 224 NKISERKP 231
NK+ P
Sbjct: 142 NKLKPYSP 149
>pdb|3DBA|A Chain A, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
pdb|3DBA|B Chain B, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
Length = 180
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 46/194 (23%)
Query: 34 LEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLER 93
+ E IL +L I +E ++E +V K + LL +RC++F+ +S R
Sbjct: 1 MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATR 60
Query: 94 ILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGN 153
+L P + E N V+ P+ TVF L
Sbjct: 61 LLNVT--------PTSKFEDNLVN--------PDK-----ETVFPLD------------- 86
Query: 154 TVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQ 213
IA +VA T + NI DV + D+++ +TT ++ +PI G
Sbjct: 87 ---------IGIAGWVAHTKKFFNIPDVKK--NNHFSDYLDKKTGYTTVNMMAIPITQG- 134
Query: 214 KTVIGVAQLINKIS 227
K V+ V +NK++
Sbjct: 135 KEVLAVVMALNKLN 148
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 19 CGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAV 78
G G N +LF + EF + L +I+ ++ ++ L D++ + +V
Sbjct: 343 LGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSL---------DVIPPQDNSV 393
Query: 79 FLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFE 138
+ SH+ + + G V + R P + + + +I+ + + I +
Sbjct: 394 PPRAGFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFNNIIPSS-QITQIPLTKSTN 452
Query: 139 LGGPGGEALVKSPGNT 154
LG G ++VK PG T
Sbjct: 453 LG--SGTSVVKGPGFT 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,027,871
Number of Sequences: 62578
Number of extensions: 494789
Number of successful extensions: 924
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 55
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)