Query psy8476
Match_columns 421
No_of_seqs 161 out of 2245
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:50:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibj_A CGMP-dependent 3',5'-cy 100.0 6.2E-35 2.1E-39 314.4 20.9 309 36-408 11-369 (691)
2 1ykd_A Adenylate cyclase; GAF 100.0 3.4E-33 1.2E-37 280.6 19.2 296 36-389 5-389 (398)
3 1mc0_A 3',5'-cyclic nucleotide 100.0 3.2E-32 1.1E-36 270.0 20.0 295 38-395 12-356 (368)
4 3bjc_A CGMP-specific 3',5'-cyc 100.0 6.9E-33 2.4E-37 305.5 -0.4 322 33-406 146-538 (878)
5 2zmf_A CAMP and CAMP-inhibited 99.9 6.6E-23 2.2E-27 182.3 15.4 101 284-387 87-187 (189)
6 2e4s_A CAMP and CAMP-inhibited 99.9 3.3E-22 1.1E-26 178.2 14.5 102 285-389 88-189 (189)
7 3dba_A CONE CGMP-specific 3',5 99.9 3.4E-22 1.2E-26 179.2 12.3 88 286-376 86-173 (180)
8 3k2n_A Sigma-54-dependent tran 99.8 4.6E-19 1.6E-23 156.2 18.3 61 324-386 116-176 (177)
9 3cit_A Sensor histidine kinase 99.8 3.7E-19 1.3E-23 154.3 16.8 67 320-386 91-157 (160)
10 3trc_A Phosphoenolpyruvate-pro 99.8 1.3E-18 4.5E-23 151.8 18.6 96 286-386 76-171 (171)
11 3oov_A Methyl-accepting chemot 99.8 2.1E-18 7.3E-23 150.1 17.2 95 287-382 73-168 (169)
12 3e0y_A Conserved domain protei 99.8 1E-18 3.6E-23 153.7 13.4 62 324-387 116-177 (181)
13 2vjw_A GAF-B, GAF family prote 99.8 1.9E-18 6.5E-23 150.3 11.3 130 242-386 6-144 (149)
14 1ykd_A Adenylate cyclase; GAF 99.8 2E-18 6.9E-23 172.8 13.0 169 3-226 162-331 (398)
15 3p01_A Two-component response 99.8 2.3E-17 7.9E-22 147.4 16.5 88 287-379 95-182 (184)
16 1mc0_A 3',5'-cyclic nucleotide 99.7 3.2E-17 1.1E-21 161.9 18.4 170 3-230 144-316 (368)
17 3mmh_A FRMSR, methionine-R-sul 99.7 8.7E-17 3E-21 142.5 18.5 80 287-375 82-161 (167)
18 3o5y_A Sensor protein; GAF dom 99.7 5.3E-18 1.8E-22 150.2 10.3 152 239-395 3-162 (165)
19 3ci6_A Phosphoenolpyruvate-pro 99.7 6.7E-17 2.3E-21 139.8 16.5 93 286-383 78-170 (171)
20 3ibj_A CGMP-dependent 3',5'-cy 99.7 2.4E-17 8.3E-22 177.2 15.3 170 3-230 144-316 (691)
21 1vhm_A Protein YEBR; structura 99.7 1E-16 3.5E-21 145.5 16.4 86 287-381 93-178 (195)
22 2lb5_A Sensor histidine kinase 99.7 1.5E-17 5.3E-22 151.5 8.3 86 293-382 118-203 (208)
23 2w3g_A DOSS, two component sen 99.7 1.7E-16 5.7E-21 135.6 12.2 141 238-384 3-153 (153)
24 2qyb_A Membrane protein, putat 99.7 4.9E-16 1.7E-20 137.5 11.4 105 287-395 72-178 (181)
25 3hcy_A Putative two-component 99.6 1.7E-16 5.6E-21 136.5 5.5 138 244-386 10-149 (151)
26 1f5m_A GAF; CGMP binding, sign 99.6 6.3E-15 2.1E-19 132.2 15.8 80 287-374 98-177 (180)
27 3bjc_A CGMP-specific 3',5'-cyc 99.6 8E-17 2.7E-21 177.5 0.0 179 3-228 297-479 (878)
28 3ksh_A Putative uncharacterize 99.6 6.3E-15 2.1E-19 129.2 11.2 127 238-374 28-159 (160)
29 3rfb_A Putative uncharacterize 99.6 6.3E-15 2.2E-19 130.4 11.2 127 238-374 29-160 (171)
30 2k2n_A Sensor protein, SYB-CPH 99.6 4E-15 1.4E-19 131.5 7.8 83 294-380 89-171 (172)
31 4glq_A Methyl-accepting chemot 99.5 1.6E-14 5.4E-19 128.4 10.5 92 292-386 73-164 (171)
32 3rfb_A Putative uncharacterize 99.4 1.2E-12 4.2E-17 115.7 13.8 122 41-230 19-141 (171)
33 3ksh_A Putative uncharacterize 99.4 1.6E-12 5.5E-17 113.8 12.0 122 41-230 18-140 (160)
34 2vjw_A GAF-B, GAF family prote 99.4 4.3E-12 1.5E-16 109.9 11.3 108 55-230 1-113 (149)
35 3eea_A GAF domain/HD domain pr 99.2 1.9E-10 6.6E-15 95.0 10.5 140 238-382 10-162 (162)
36 3hcy_A Putative two-component 99.1 3.3E-11 1.1E-15 103.0 6.0 117 54-230 2-118 (151)
37 2w3g_A DOSS, two component sen 99.1 1.2E-10 4.3E-15 98.6 9.5 119 52-230 3-124 (153)
38 3o5y_A Sensor protein; GAF dom 99.0 3.3E-09 1.1E-13 93.3 11.2 119 54-230 4-122 (165)
39 3nhq_A Bacteriophytochrome; ph 98.9 4E-08 1.4E-12 100.8 18.3 90 323-414 254-343 (505)
40 3zq5_A Phytochrome-like protei 98.8 1.3E-07 4.4E-12 97.3 19.3 87 322-410 266-352 (520)
41 2ool_A Sensor protein; bacteri 98.6 7E-07 2.4E-11 87.1 15.5 61 322-384 275-335 (337)
42 4e04_A Bacteriophytochrome (li 98.6 1.5E-06 5.3E-11 84.0 16.2 54 322-377 262-315 (327)
43 4eho_A Bacteriophytochrome, PA 98.6 1.1E-06 3.7E-11 93.4 16.5 84 322-407 260-343 (635)
44 2e4s_A CAMP and CAMP-inhibited 98.4 1.1E-07 3.7E-12 83.6 3.5 151 31-230 4-155 (189)
45 3s7o_A Bacteriophytochrome; bi 98.4 4.9E-06 1.7E-10 80.8 15.3 54 322-377 280-333 (343)
46 4eu0_A PELD; C-DI-GMP, signali 98.3 7.6E-07 2.6E-11 85.1 6.5 124 245-381 31-157 (298)
47 3trc_A Phosphoenolpyruvate-pro 98.1 2.4E-06 8.2E-11 73.2 6.1 137 36-230 4-140 (171)
48 2zmf_A CAMP and CAMP-inhibited 98.1 1.1E-06 3.7E-11 76.8 3.7 146 35-229 8-153 (189)
49 3oov_A Methyl-accepting chemot 98.1 3.7E-06 1.3E-10 71.9 5.5 135 40-229 2-139 (169)
50 3ci6_A Phosphoenolpyruvate-pro 97.8 1.6E-05 5.3E-10 67.5 5.4 137 35-230 5-142 (171)
51 3p01_A Two-component response 97.8 7.5E-06 2.6E-10 72.0 2.7 139 30-230 20-158 (184)
52 2qyb_A Membrane protein, putat 97.6 2E-05 6.9E-10 68.5 1.7 134 39-230 2-137 (181)
53 2w1r_A Spovt, stage V sporulat 97.4 0.00069 2.4E-08 56.1 9.3 104 259-374 18-121 (123)
54 2k2n_A Sensor protein, SYB-CPH 97.4 2.2E-05 7.5E-10 68.3 -0.2 66 162-230 77-146 (172)
55 2lb5_A Sensor histidine kinase 97.3 7.4E-05 2.5E-09 66.9 1.7 158 31-230 7-176 (208)
56 3mmh_A FRMSR, methionine-R-sul 97.2 0.00013 4.4E-09 63.9 2.3 37 237-273 27-67 (167)
57 4eu0_A PELD; C-DI-GMP, signali 96.9 0.0065 2.2E-07 57.9 11.1 106 56-228 24-129 (298)
58 3cit_A Sensor histidine kinase 96.8 0.0013 4.4E-08 56.8 5.0 122 27-229 2-124 (160)
59 3nhq_A Bacteriophytochrome; ph 96.5 0.0055 1.9E-07 62.7 8.3 80 3-83 283-362 (505)
60 3dba_A CONE CGMP-specific 3',5 96.5 0.00099 3.4E-08 58.4 2.1 36 233-268 13-53 (180)
61 1vhm_A Protein YEBR; structura 96.3 0.0023 7.9E-08 57.3 3.5 30 237-266 39-73 (195)
62 3zq5_A Phytochrome-like protei 96.2 0.018 6.2E-07 59.1 10.1 79 3-82 296-374 (520)
63 1f5m_A GAF; CGMP binding, sign 95.5 0.0042 1.4E-07 54.8 1.8 18 254-271 63-81 (180)
64 3eea_A GAF domain/HD domain pr 95.5 0.1 3.4E-06 43.3 9.6 126 51-230 9-135 (162)
65 4glq_A Methyl-accepting chemot 95.3 0.011 3.6E-07 51.6 3.5 130 46-230 3-133 (171)
66 3e0y_A Conserved domain protei 94.5 0.015 5.2E-07 49.3 2.4 77 234-310 22-105 (181)
67 3k2n_A Sigma-54-dependent tran 93.2 0.071 2.4E-06 45.1 4.2 140 37-230 3-145 (177)
68 4eho_A Bacteriophytochrome, PA 93.2 0.064 2.2E-06 56.6 4.6 79 3-82 290-368 (635)
69 2w1r_A Spovt, stage V sporulat 92.2 0.61 2.1E-05 38.1 8.4 57 163-227 44-100 (123)
70 3e98_A GAF domain of unknown f 91.4 1.3 4.6E-05 40.8 10.7 44 41-85 104-147 (252)
71 2gx5_A GTP-sensing transcripti 89.8 1.5 5.2E-05 37.8 8.9 50 326-378 119-168 (170)
72 2w1t_A Spovt, stage V sporulat 87.9 3.9 0.00013 35.5 10.1 77 287-373 99-175 (178)
73 3by8_A Sensor protein DCUS; hi 83.9 15 0.00052 30.0 11.7 28 58-87 41-68 (142)
74 2o99_A Acetate operon represso 78.7 8.7 0.0003 32.9 8.7 34 326-361 126-159 (182)
75 1ysp_A Transcriptional regulat 77.4 7.5 0.00026 33.2 7.9 33 326-360 122-154 (181)
76 3obf_A Putative transcriptiona 77.2 6.9 0.00024 33.3 7.5 33 326-360 121-153 (176)
77 1tf1_A Negative regulator of a 76.2 8.5 0.00029 33.6 8.0 34 326-361 142-175 (198)
78 3e98_A GAF domain of unknown f 72.5 3.7 0.00013 37.8 4.7 51 324-376 193-243 (252)
79 1mkm_A ICLR transcriptional re 70.8 11 0.00037 34.2 7.5 34 326-361 197-230 (249)
80 1p0z_A Sensor kinase CITA; tra 70.4 39 0.0013 26.9 12.2 29 58-88 35-63 (131)
81 2ia2_A Putative transcriptiona 70.1 12 0.0004 34.3 7.7 32 326-359 209-240 (265)
82 3r4k_A Transcriptional regulat 69.3 12 0.00041 34.2 7.5 43 41-85 65-107 (260)
83 3mq0_A Transcriptional repress 68.6 14 0.00048 34.1 7.9 34 326-361 218-251 (275)
84 2o0y_A Transcriptional regulat 68.5 9.6 0.00033 34.9 6.7 33 326-360 205-237 (260)
85 3szt_A QCSR, quorum-sensing co 67.3 24 0.00082 31.5 9.1 131 239-375 18-157 (237)
86 2g7u_A Transcriptional regulat 64.1 23 0.00079 32.1 8.4 32 326-359 202-233 (257)
87 3s7o_A Bacteriophytochrome; bi 53.6 10 0.00034 36.5 3.9 140 37-230 149-311 (343)
88 4dah_A Sporulation kinase D; a 52.7 76 0.0026 27.1 9.5 78 256-347 69-146 (217)
89 1ysq_A HTH-type transcriptiona 52.1 9.7 0.00033 32.9 3.4 31 326-358 130-160 (193)
90 2ool_A Sensor protein; bacteri 51.6 10 0.00036 36.3 3.7 141 37-230 144-306 (337)
91 3c8c_A Methyl-accepting chemot 44.3 42 0.0014 28.8 6.4 54 201-270 118-172 (240)
92 1p0z_A Sensor kinase CITA; tra 39.1 27 0.00092 27.9 3.9 22 328-349 103-124 (131)
93 3obf_A Putative transcriptiona 35.4 31 0.0011 29.0 3.9 24 202-225 121-144 (176)
94 3d3o_A Putative transcriptiona 35.3 35 0.0012 28.8 4.3 26 326-351 123-148 (178)
95 3by8_A Sensor protein DCUS; hi 35.3 33 0.0011 27.8 3.9 21 328-348 108-128 (142)
96 2o99_A Acetate operon represso 35.0 32 0.0011 29.2 3.9 24 202-225 126-149 (182)
97 3szt_A QCSR, quorum-sensing co 35.0 53 0.0018 29.2 5.6 60 163-226 75-134 (237)
98 3bjn_A Transcriptional regulat 34.6 29 0.00099 28.9 3.5 24 326-350 121-144 (165)
99 1ysp_A Transcriptional regulat 34.4 31 0.0011 29.2 3.7 23 202-224 122-144 (181)
100 4e04_A Bacteriophytochrome (li 33.3 40 0.0014 32.1 4.5 139 39-230 133-293 (327)
101 1tf1_A Negative regulator of a 31.2 39 0.0014 29.1 3.9 24 202-225 142-165 (198)
102 2o8m_C Protease; NS3, NS4A, vi 30.5 9.8 0.00034 21.8 -0.1 18 163-180 5-22 (26)
103 3lif_A Putative diguanylate cy 29.3 2.8E+02 0.0094 23.9 17.8 55 201-271 126-180 (254)
104 3qp1_A CVIR transcriptional re 29.1 1.4E+02 0.005 25.0 7.2 50 323-374 128-177 (182)
105 1mkm_A ICLR transcriptional re 28.2 46 0.0016 29.9 3.9 43 41-85 66-108 (249)
106 2g7u_A Transcriptional regulat 27.9 46 0.0016 30.1 3.9 24 202-225 202-225 (257)
107 2o0y_A Transcriptional regulat 27.8 46 0.0016 30.1 3.9 43 41-85 81-123 (260)
108 3k3c_A Protein RV1364C/MT1410; 27.5 69 0.0024 25.1 4.6 25 326-350 108-132 (158)
109 2ia2_A Putative transcriptiona 27.1 48 0.0017 30.1 3.9 42 42-85 79-120 (265)
110 3d3o_A Putative transcriptiona 27.0 42 0.0014 28.3 3.3 23 202-224 123-145 (178)
111 3by9_A Sensor protein; histidi 26.9 1.1E+02 0.0037 26.7 6.2 47 204-271 131-177 (260)
112 3r4k_A Transcriptional regulat 26.7 50 0.0017 29.9 3.9 24 202-225 196-219 (260)
113 3b47_A GSU0582, methyl-accepti 26.1 55 0.0019 26.5 3.7 24 328-351 94-126 (134)
114 3mq0_A Transcriptional repress 25.8 53 0.0018 30.1 3.9 43 41-85 88-130 (275)
115 3b47_A GSU0582, methyl-accepti 25.3 64 0.0022 26.1 4.0 24 204-227 94-126 (134)
116 3li9_A Hypothetical sensory tr 24.6 83 0.0028 28.2 5.1 52 201-269 149-200 (291)
117 3bjn_A Transcriptional regulat 23.0 61 0.0021 26.8 3.5 32 53-85 8-39 (165)
118 1ysq_A HTH-type transcriptiona 22.7 40 0.0014 28.8 2.3 23 202-224 130-152 (193)
119 3twe_A Alpha4H; unknown functi 22.6 1.1E+02 0.0037 17.0 3.4 21 378-398 5-25 (27)
120 3lic_A Sensor protein; PDC fol 22.5 1.3E+02 0.0045 26.3 6.0 49 201-270 145-193 (274)
121 3e4o_A C4-dicarboxylate transp 20.1 2.5E+02 0.0085 25.9 7.5 74 204-298 172-245 (305)
No 1
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=314.35 Aligned_cols=309 Identities=22% Similarity=0.283 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCC
Q psy8476 36 FERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNN 115 (421)
Q Consensus 36 ~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (421)
.++++.|+++++.| + .+|++++++.+++.++++++|++|+|+|+|++++.++.. ...|
T Consensus 11 ~e~~~~L~~i~~~l-s-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~----~~~g---------------- 68 (691)
T 3ibj_A 11 TDRDRKILQLCGEL-Y-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCK----VIGD---------------- 68 (691)
T ss_dssp TTHHHHHHHHHHHC-C-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEE----EETT----------------
T ss_pred HHHHHHHHHHHHHH-H-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEE----ecCC----------------
Confidence 45678999999999 5 779999999999999999999999999999988765310 0000
Q ss_pred cchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCccccc
Q psy8476 116 VDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDE 195 (421)
Q Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~ 195 (421)
...+..+++| .+ |++|+|+++|+|++++|+..+|++. .+.
T Consensus 69 --------------------------~~~~~~~~~p---------~~-Gi~g~v~~~~~pv~i~d~~~~~~~~----~~~ 108 (691)
T 3ibj_A 69 --------------------------KVLGEEVSFP---------LT-GCLGQVVEDKKSIQLKDLTSEDVQQ----LQS 108 (691)
T ss_dssp --------------------------EEEEEEEEEE---------CC-SSSHHHHHHCCCEEGGGSCHHHHHH----HHH
T ss_pred --------------------------CccccceecC---------Cc-cHHHHHHHHCCeEEeccchhccccc----ccc
Confidence 0000123344 67 9999999999999999999988643 233
Q ss_pred CCCceeeeeEEeeeEeC-CCcEEEEEEeeecccC-Ccch---------h-----------------h-------------
Q psy8476 196 ESDFTTRCILCMPIFNG-QKTVIGVAQLINKISE-RKPL---------C-----------------R------------- 234 (421)
Q Consensus 196 ~~~~~~~s~l~vPl~~~-~~~vIGVl~l~~~~~~-~~~~---------~-----------------~------------- 234 (421)
..++.++|+|||||+.+ +|+++||+.+.++..+ .|.- + +
T Consensus 109 ~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~ 188 (691)
T 3ibj_A 109 MLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAK 188 (691)
T ss_dssp HHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999985 4799999999998876 3410 0 0
Q ss_pred hccc-cccHHHHH----hcCCCCCCcceeEEEEEcCCCCeeeeecCCCC----cccccCCCchHHHHHHHhCCEEEEcCC
Q psy8476 235 RESN-NVDIEDIL----AHTPEDPSIAFSTVFELGGPGGEALVKSPGNT----VCNTHSRLATIAKYVASTGQILNIGDV 305 (421)
Q Consensus 235 ~~~~-~~dl~~IL----~~~~~~l~a~~~~i~l~d~~~~~~~~~~~~~~----~~~~~~~~~gi~g~v~~tg~~v~i~D~ 305 (421)
.... ..++++++ ..+.+.++++.++|+++|++........+... .....+.+.|++|+|+++|+|++++|+
T Consensus 189 ~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~v~~~g~~v~i~d~ 268 (691)
T 3ibj_A 189 NLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDA 268 (691)
T ss_dssp HHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSSEEEEECCSSSCCSSCCCEEEEETTSHHHHHHHHHCSCEEESCS
T ss_pred HHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCCeEEEEeecCCcccccccceeccCCCCHHHHHHHhCCEEEecCc
Confidence 0122 34555544 44556678999999999993222222332211 112456789999999999999999999
Q ss_pred CCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 306 PSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACK 385 (421)
Q Consensus 306 ~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~ 385 (421)
+.+|+ |....+...|+.++|+||+||..++|+++|||.+.++.++++|+++|+++|+.+|.|+|+||+|+++|+++++
T Consensus 269 ~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~lA~~~aiAIena~l~~~l~~ 346 (691)
T 3ibj_A 269 YAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNE 346 (691)
T ss_dssp TTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 4455566677888999999999964799999999999987789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccchhHH
Q psy8476 386 LMAKQKVFQRYLTFCGIGIQNAQ 408 (421)
Q Consensus 386 ~~~~~~~~~e~~~~~~~~~~~~~ 408 (421)
..++.+++.|+++++.++...|.
T Consensus 347 ~~~~~~~~~e~l~~~~~~~~~e~ 369 (691)
T 3ibj_A 347 AQYRSHLANEMMMYHMKVSDDEY 369 (691)
T ss_dssp HHHHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHH
Confidence 99999999999999998776654
No 2
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=100.00 E-value=3.4e-33 Score=280.55 Aligned_cols=296 Identities=25% Similarity=0.359 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHH----HHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCccccc
Q psy8476 36 FERNQILLKLARSIFEEQSNLECLVTKIMTE----ARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRR 111 (421)
Q Consensus 36 ~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~----~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (421)
.++++.|.++.+.+ ++ .|++.+|+.+++. ++++++|++|+||++|++++.++.. ...|.
T Consensus 5 ~~~l~~l~~~~~~l-~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~----~~~g~----------- 67 (398)
T 1ykd_A 5 EQKLQIVHQTLSML-DS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSI----VAAGE----------- 67 (398)
T ss_dssp HHHHHHHHHHHHHH-TT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEE----EECCG-----------
T ss_pred HHHHHHHHHHHHHH-Hh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEE----eecCC-----------
Confidence 45678889998877 55 6998877766665 8999999999999999988766321 00000
Q ss_pred CCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCc---cccc
Q psy8476 112 ESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSW---MREE 188 (421)
Q Consensus 112 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~---p~~~ 188 (421)
+.....+++| .+.|++|+|+++|+|++|+|+..+ |+|
T Consensus 68 ------------------------------~~~~~~~~~~---------~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~- 107 (398)
T 1ykd_A 68 ------------------------------GDRSLEIRIP---------ADKGIAGEVATFKQVVNIPFDFYHDPRSIF- 107 (398)
T ss_dssp ------------------------------GGCCCCCEEE---------TTSHHHHHHHHHCCCEEECSCGGGSGGGHH-
T ss_pred ------------------------------CCccceeecC---------CCCchhhhhhccCcEEeccchhcccchhhc-
Confidence 0000012233 679999999999999999999987 544
Q ss_pred cCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeec---------------ccCCcc---------hh----------h
Q psy8476 189 VCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINK---------------ISERKP---------LC----------R 234 (421)
Q Consensus 189 ~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~---------------~~~~~~---------~~----------~ 234 (421)
.+..+...++.++|++||||++.+|+++||+++.++ .+..|+ ++ +
T Consensus 108 -~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~ 186 (398)
T 1ykd_A 108 -AQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSR 186 (398)
T ss_dssp -HHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHH
T ss_pred -ccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456889999999999877899999999998 344441 00 0
Q ss_pred -------h-------------ccc-cccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeeecC-CCC--cccccCCC
Q psy8476 235 -------R-------------ESN-NVDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVKSP-GNT--VCNTHSRL 286 (421)
Q Consensus 235 -------~-------------~~~-~~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~~~-~~~--~~~~~~~~ 286 (421)
. ... ..++++++.. +.+.++++.+.||++|+++..++.... .+. .....+.+
T Consensus 187 l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (398)
T 1ykd_A 187 SFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG 266 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC
Confidence 0 123 6677766544 456788999999999999887665432 111 12345678
Q ss_pred chHHHHHHHhCCEEEEc-CCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCC--------------
Q psy8476 287 ATIAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVT-------------- 351 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~-D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~-------------- 351 (421)
.|+.|+++++|++++++ |++.+|++...+.++...++.++|+|||||+..+|+++|||.+.++.+
T Consensus 267 ~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~~~~~~~~~~~~ 346 (398)
T 1ykd_A 267 KGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKTGEFPPYNPETWPI 346 (398)
T ss_dssp SHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECCSSCCCCCCGGGTTC
T ss_pred CchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCCcccccccccccccc
Confidence 99999999999999999 999887643222244455778899999999953579999999999983
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 352 -----RQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAK 389 (421)
Q Consensus 352 -----~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~~~ 389 (421)
...|+++|+++|+.||.|+|+||+|+++|+++++...+
T Consensus 347 ~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~~~~ 389 (398)
T 1ykd_A 347 APECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQEQG 389 (398)
T ss_dssp CCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999999999999999999999887554
No 3
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=100.00 E-value=3.2e-32 Score=270.00 Aligned_cols=295 Identities=23% Similarity=0.306 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcc
Q psy8476 38 RNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVD 117 (421)
Q Consensus 38 ~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 117 (421)
..+.|+++++.| + .+|++++++.+++.+++++++++|+|+++|++++.++.. ..
T Consensus 12 ~~~~l~~l~~~l-~-~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~----~~-------------------- 65 (368)
T 1mc0_A 12 HDRKILQLCGEL-F-DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCK----VI-------------------- 65 (368)
T ss_dssp HHHHHHHHHHTC-C-CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEE----EE--------------------
T ss_pred chHHHHHHHHHH-h-hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEE----ec--------------------
Confidence 456799999998 4 569999999999999999999999999999987765311 00
Q ss_pred hhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCC
Q psy8476 118 IEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEES 197 (421)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~ 197 (421)
.|......+.+| .+.|++|+|+++|+|+.++|+..+|+.. .+...
T Consensus 66 ----------------------~g~~~~~~~~~~---------~~~g~~g~~~~~~~~~~i~d~~~~~~~~----~~~~~ 110 (368)
T 1mc0_A 66 ----------------------GDKVLGEEVSFP---------LTMGRLGQVVEDKQCIQLKDLTSDDVQQ----LQNML 110 (368)
T ss_dssp ----------------------TTEEEEEEEEEE---------SSSSSHHHHHHHCCCEEGGGSCHHHHHH----HHHHH
T ss_pred ----------------------CCCccccceeec---------cccCHHHHHHhcCCeEEecccccccccc----ccccc
Confidence 000000112333 6789999999999999999999988622 23345
Q ss_pred CceeeeeEEeeeEeC-CCcEEEEEEeeecccCC-cch---------h----------------h--------------hc
Q psy8476 198 DFTTRCILCMPIFNG-QKTVIGVAQLINKISER-KPL---------C----------------R--------------RE 236 (421)
Q Consensus 198 ~~~~~s~l~vPl~~~-~~~vIGVl~l~~~~~~~-~~~---------~----------------~--------------~~ 236 (421)
++.++|++|+||+.+ +|+++||+.+.++.++. |+- + + ..
T Consensus 111 ~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l 190 (368)
T 1mc0_A 111 GCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNL 190 (368)
T ss_dssp CSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999986 37999999999888764 410 0 0 00
Q ss_pred ccc-ccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeeecCC---CC-cccccCCCchHHHHHHHhCCEEEEcCCCC
Q psy8476 237 SNN-VDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVKSPG---NT-VCNTHSRLATIAKYVASTGQILNIGDVPS 307 (421)
Q Consensus 237 ~~~-~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~~~~---~~-~~~~~~~~~gi~g~v~~tg~~v~i~D~~~ 307 (421)
... .++++++.. +.+.++++.+.||++|++........+. .. .....+.+.|+.|+++++|+|++++|++.
T Consensus 191 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~ 270 (368)
T 1mc0_A 191 FTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYA 270 (368)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHHHHHHHHCCCEEESCSTT
T ss_pred HhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCCceEEEEeccccccccccceeecCCCceeeeehhhCCEEEecCccc
Confidence 123 466666544 4566789999999999933323333321 11 12345678999999999999999999998
Q ss_pred ccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 308 WMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLM 387 (421)
Q Consensus 308 ~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~ 387 (421)
+|+ |.+..+...++.++|++|+||..++|+++|||.+.++.++..|+++|+++|+.+|.|+|+||+|+++|+++++..
T Consensus 271 ~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~~ 348 (368)
T 1mc0_A 271 HPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQ 348 (368)
T ss_dssp CTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Ccc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 444555455667899999999996579999999999987658999999999999999999999999999999977
Q ss_pred HHHHHHHH
Q psy8476 388 AKQKVFQR 395 (421)
Q Consensus 388 ~~~~~~~e 395 (421)
.+..++..
T Consensus 349 ~~d~Lt~~ 356 (368)
T 1mc0_A 349 YRSHLANE 356 (368)
T ss_dssp C-------
T ss_pred HHHHHHHH
Confidence 77666554
No 4
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=99.97 E-value=6.9e-33 Score=305.46 Aligned_cols=322 Identities=30% Similarity=0.415 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhh-HHHHHh-CCCcccccCCcccc
Q psy8476 33 ILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASH-LERILE-RPGRVISERKPLCR 110 (421)
Q Consensus 33 ~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~ 110 (421)
.++.+++++|+++++.| ++.+|++++++.+++.++++++|++|+|+++|++.+.... +..+.. ..|..
T Consensus 146 ~~~~~~l~~L~eis~~L-~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~--------- 215 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDI-SSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGST--------- 215 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCcc---------
Confidence 45667889999999999 6667999999999999999999999999999998541100 000000 00100
Q ss_pred cCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccC
Q psy8476 111 RESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVC 190 (421)
Q Consensus 111 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~ 190 (421)
++. + ....+++| .+.|++|+|+++|+|++|+|+..||++.
T Consensus 216 ---------------~~~-----------~---~~~~~~~p---------~~~gi~g~v~~~g~pv~I~D~~~dp~f~-- 255 (878)
T 3bjc_A 216 ---------------LEE-----------V---SNNCIRLE---------WNKGIVGHVAALGEPLNIKDAYEDPRFN-- 255 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------ccc-----------c---CCcceeee---------CCccHHHHHHhcCceEEeCCcccCcccc--
Confidence 000 0 00112344 6799999999999999999999999864
Q ss_pred cccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccC---Ccc---------hh----------------hh-------
Q psy8476 191 NDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISE---RKP---------LC----------------RR------- 235 (421)
Q Consensus 191 ~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~---~~~---------~~----------------~~------- 235 (421)
+..+...++.++|++|+||+..+|+++|||.+.++.++ .|+ ++ ++
T Consensus 256 ~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~~~~~ 335 (878)
T 3bjc_A 256 AEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQV 335 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567889999999999956799999999998876 441 00 00
Q ss_pred -------c-cccccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeeecCC-----------CC-c-ccccCCCchHH
Q psy8476 236 -------E-SNNVDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVKSPG-----------NT-V-CNTHSRLATIA 290 (421)
Q Consensus 236 -------~-~~~~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~~~~-----------~~-~-~~~~~~~~gi~ 290 (421)
. ..+.++++++.. +.+.++++.++||++|+++..++..... .. . ....+.+.|++
T Consensus 336 L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~gi~ 415 (878)
T 3bjc_A 336 LLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREHDANKINYMYA 415 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccccccchhhhHH
Confidence 0 123466665544 4556789999999999987764432110 00 0 13356778999
Q ss_pred HHHHHhCCEEEEcCCCCccccccCCcccccCC---CccceEEEEEeeeCC-CcEEEEEEEEecCCC-----CCCCHHHHH
Q psy8476 291 KYVASTGQILNIGDVPSWMREEVCNDEDEESD---FTTRCILCMPIFNGQ-KTVIGVAQLINKVTR-----QPFTDCDVS 361 (421)
Q Consensus 291 g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~---~~~~S~L~vPI~~~~-g~vIGVl~v~~~~~~-----~~Fs~~d~~ 361 (421)
|+++++|++++++|++.+++ |....+...+ +.++|+||+||..++ |+++|||.+.++.++ +.|+++|++
T Consensus 416 g~v~~~g~~v~i~D~~~d~r--~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~~~~Ft~~d~~ 493 (878)
T 3bjc_A 416 QYVKNTMEPLNIPDVSKDKR--FPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDEQ 493 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhcCCeeeecCcccccc--cccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccCCCCCCHHHHH
Confidence 99999999999999999865 4444555566 778999999999964 799999999998875 689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy8476 362 IFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQN 406 (421)
Q Consensus 362 lL~~lA~q~aiAlena~L~~e~~~~~~~~~~~~e~~~~~~~~~~~ 406 (421)
+|+.||.|+|+||+|+++|+++++..++.+.++|+++++.++...
T Consensus 494 lL~~lA~~aaiAIenarl~e~l~~~~~~~~~a~e~Ls~~~~~~~e 538 (878)
T 3bjc_A 494 FLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEE 538 (878)
T ss_dssp --------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhcCCHH
Confidence 999999999999999999999999999999999999998875444
No 5
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=182.32 Aligned_cols=101 Identities=40% Similarity=0.598 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHH
Q psy8476 284 SRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIF 363 (421)
Q Consensus 284 ~~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL 363 (421)
+.+.|+.|+|+++|+++.++|+..++++ ........++..+|+||+||+. +|+++|||.+.++..+++|+++|+++|
T Consensus 87 ~~~~~~~~~v~~~~~~~~i~d~~~~~~~--~~~~~~~~~~~~~s~l~vPl~~-~~~~~Gvl~l~~~~~~~~f~~~d~~ll 163 (189)
T 2zmf_A 87 SIEKGIAGQVARTGEVLNIPDAYADPRF--NREVDLYTGYTTRNILCMPIVS-RGSVIGVVQMVNKISGSAFSKTDENNF 163 (189)
T ss_dssp ETTSHHHHHHHHHCCCEEESCGGGSTTC--CTHHHHHHCCCCCCEEEEEEEE-TTEEEEEEEEEEETTSSSCCHHHHHHH
T ss_pred CCCccHHHHHHHhCCeEEEecccccccc--cccchhhcccccceEEEeeecc-cCceeeEEEEEEcCCCCCcCHHHHHHH
Confidence 4457999999999999999999887653 2333344556789999999999 579999999998887789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 364 EAFAIFCGLGIHNTQMYENACKLM 387 (421)
Q Consensus 364 ~~lA~q~aiAlena~L~~e~~~~~ 387 (421)
+.||+|+|+||+|++||+++++.+
T Consensus 164 ~~lA~q~a~Ai~na~l~~~lr~sE 187 (189)
T 2zmf_A 164 KMFAVFCALALHCANMYHRIRHSE 187 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887643
No 6
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.88 E-value=3.3e-22 Score=178.19 Aligned_cols=102 Identities=38% Similarity=0.592 Sum_probs=82.1
Q ss_pred CCchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHH
Q psy8476 285 RLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFE 364 (421)
Q Consensus 285 ~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~ 364 (421)
.+.|+.|+++++|+|+.++|+..+++ |....+...++.++|++|+||+. +|+++|||.+.++.++..|+++|+++|+
T Consensus 88 ~~~~~~~~v~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~-~~~~iGvl~l~~~~~~~~f~~~d~~ll~ 164 (189)
T 2e4s_A 88 IEKGIAGQVARTGEVLNIPDAYADPR--FNREVDLYTGYTTRNILCMPIVS-RGSVIGVVQMVNKISGSAFSKTDENNFK 164 (189)
T ss_dssp TTSHHHHHHHHHCCCEEESCGGGSTT--CCTHHHHHHCCCCCCEEEEEEEE-TTEEEEEEEEEEETTSSSCCHHHHHHHH
T ss_pred CCCcHHHHHHHhCCEEEecCCCcCcc--cChhhccccCCccceEEEEEecc-CCeEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 34688888888888888888877654 33333344556789999999998 6799999999999886689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 365 AFAIFCGLGIHNTQMYENACKLMAK 389 (421)
Q Consensus 365 ~lA~q~aiAlena~L~~e~~~~~~~ 389 (421)
.||+|+|+||+|+++|+++++.++|
T Consensus 165 ~la~~~a~ai~na~l~~~~~~~~~r 189 (189)
T 2e4s_A 165 MFAVFCALALHCANMYHRIRHSECI 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998887653
No 7
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.87 E-value=3.4e-22 Score=179.18 Aligned_cols=88 Identities=28% Similarity=0.422 Sum_probs=71.3
Q ss_pred CchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476 286 LATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEA 365 (421)
Q Consensus 286 ~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~ 365 (421)
++|++|+|+++|+|++++|++.+|+ |.+..+...++.++|+|||||+.+ |+++|||++.|+.++..|+++|+++|+.
T Consensus 86 ~~gi~g~v~~tg~~v~i~d~~~d~~--f~~~~~~~~~~~~~S~L~vPl~~~-~~viGVL~l~n~~~~~~Ft~~d~~lL~~ 162 (180)
T 3dba_A 86 DIGIAGWVAHTKKFFNIPDVKKNNH--FSDYLDKKTGYTTVNMMAIPITQG-KEVLAVVMALNKLNASEFSKEDEEVFKK 162 (180)
T ss_dssp TSSHHHHHHHHTCCEEESCGGGCTT--CCCHHHHHHCCCCCCEEEEEEEET-TEEEEEEEEEEESSSSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCEEEecCCCCCcc--cChhhccccCccccEEEEEEeccC-CEEEEEEEEEeCCCCCCCCHHHHHHHHH
Confidence 4577777777777777777777654 333344445677899999999995 7999999999998866899999999999
Q ss_pred HHHHHHHHHHH
Q psy8476 366 FAIFCGLGIHN 376 (421)
Q Consensus 366 lA~q~aiAlen 376 (421)
||+|+|++|.-
T Consensus 163 lA~~aa~~i~~ 173 (180)
T 3dba_A 163 YLNFISLVLRL 173 (180)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhh
Confidence 99999999863
No 8
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.82 E-value=4.6e-19 Score=156.19 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=56.1
Q ss_pred ccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 324 TTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKL 386 (421)
Q Consensus 324 ~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~ 386 (421)
..+|++|+||..+ |+++|||.+.++.++ .|+++|+++|+.+|+|+|+||+|+++|+++++.
T Consensus 116 ~~~s~l~vPL~~~-~~~iGvL~l~~~~~~-~f~~~d~~ll~~lA~~~a~Ai~na~l~~~l~~~ 176 (177)
T 3k2n_A 116 GMRQIVLSPLRSG-GRVIGFLSFVSAEEK-LWSDGDKSLLSGVSSSIAIAVSNALAYEELRQR 176 (177)
T ss_dssp TCCEEEEEEEEET-TEEEEEEEEEESSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEEEEC-CEEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3589999999995 699999999999875 999999999999999999999999999998753
No 9
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=99.82 E-value=3.7e-19 Score=154.34 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=62.1
Q ss_pred cCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 320 ESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKL 386 (421)
Q Consensus 320 ~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~ 386 (421)
.+||.++|+|||||...+|+++||+++.|+.++..|+++|+++++.+|.|+|.+|+|++||++++..
T Consensus 91 ~tg~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 91 RPGTHLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp CTTSSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999975589999999999999987899999999999999999999999999887764
No 10
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.81 E-value=1.3e-18 Score=151.79 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=79.7
Q ss_pred CchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476 286 LATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEA 365 (421)
Q Consensus 286 ~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~ 365 (421)
+.|+.|+++++|+|+.++|...++++...+.. .....+|++|+||.. +|+++|||.+.++.+ +.|+++|+++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~s~l~vPl~~-~~~~~Gvl~~~~~~~-~~f~~~d~~~l~~ 150 (171)
T 3trc_A 76 GEGLIGLVGEREEPINLADAPLHPAYKHRPEL---GEEDYHGFLGIPIIE-QGELLGILVIQQLES-HHFAEEEEAFCVT 150 (171)
T ss_dssp TCHHHHHHHHHTSCEEESCGGGSTTCCCCGGG---CCCCCCEEEEEEEEE-TTEEEEEEEEEESSS-CCCCHHHHHHHHH
T ss_pred CCChhhHHHhcCCeEEeCCCCCCCcccccccC---CcccccEEEEEeEEE-CCEEEEEEEEeecCC-CCCCHHHHHHHHH
Confidence 46899999999999999999887664322211 234569999999999 579999999999876 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8476 366 FAIFCGLGIHNTQMYENACKL 386 (421)
Q Consensus 366 lA~q~aiAlena~L~~e~~~~ 386 (421)
+|+|+|+||+|+++|++++++
T Consensus 151 la~~~a~ai~~a~l~~~l~~L 171 (171)
T 3trc_A 151 LAIHLAAEIAHARAKGALEKL 171 (171)
T ss_dssp HHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987763
No 11
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.79 E-value=2.1e-18 Score=150.15 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=73.3
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCc-ccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCND-EDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEA 365 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~-~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~ 365 (421)
.++.++++++|+|+.++|+..+++....+. .+...++..+|++|+||.. +|+++|||.+.++.++..|+++|+++|+.
T Consensus 73 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-~~~~iGvl~~~~~~~~~~f~~~d~~~l~~ 151 (169)
T 3oov_A 73 GGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVV-KGEAIGVFAVDNRSSRRSLNDTDVDTIKL 151 (169)
T ss_dssp GHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEE-TTEEEEEEEEECTTSSSCCCHHHHHHHHH
T ss_pred cchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEe-CCcEEEEEEEEccccCCCCCHHHHHHHHH
Confidence 567777777777777777666544221111 1122334579999999998 57999999999988766799999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8476 366 FAIFCGLGIHNTQMYEN 382 (421)
Q Consensus 366 lA~q~aiAlena~L~~e 382 (421)
+|+|+|+||+|+++|++
T Consensus 152 ~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 152 FADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999999975
No 12
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.78 E-value=1e-18 Score=153.66 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=54.6
Q ss_pred ccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 324 TTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLM 387 (421)
Q Consensus 324 ~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~ 387 (421)
..+|++|+||..+ |+++|||.+.++.+ ..|+++|+++|+.+|+++|+||+|+++|++.++..
T Consensus 116 ~~~s~l~vPl~~~-~~~iGvl~~~~~~~-~~f~~~~~~~l~~la~~~a~al~~~~~~~~~~~~l 177 (181)
T 3e0y_A 116 KYNSMLSFPIGDK-KEVYGVINLNTTSI-RSFHEDEIYFVSIIANLILTAIKLRQQVASSRKAA 177 (181)
T ss_dssp CEEEEEEEEEECS-SCEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CcceEEEEEEEeC-CeEEEEEEEeeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999995 79999999999975 59999999999999999999999999998876653
No 13
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.76 E-value=1.9e-18 Score=150.29 Aligned_cols=130 Identities=13% Similarity=0.066 Sum_probs=103.5
Q ss_pred HHHHHhcCCCCCCcceeEEEEEcCCC----Ceeeeec--CCCC--c-ccccCCCchHHHHHHHhCCEEEEcCCCCccccc
Q psy8476 242 IEDILAHTPEDPSIAFSTVFELGGPG----GEALVKS--PGNT--V-CNTHSRLATIAKYVASTGQILNIGDVPSWMREE 312 (421)
Q Consensus 242 l~~IL~~~~~~l~a~~~~i~l~d~~~----~~~~~~~--~~~~--~-~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~ 312 (421)
++.|+..+.+.+++++++|+++|++. +.+.+.. +... . ....+.+.|++|+|+++|+|++++|+..+|
T Consensus 6 L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~d~--- 82 (149)
T 2vjw_A 6 FRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDGPG--- 82 (149)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCTTS---
T ss_pred HHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCcccCC---
Confidence 55666777778899999999999875 5544432 2211 1 123567899999999999999999998764
Q ss_pred cCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 313 VCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKL 386 (421)
Q Consensus 313 f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~ 386 (421)
..+|+|||||.. +|+++|||++.++.....|+++|+++++.||+|+|+||+|+++|++.+++
T Consensus 83 -----------~~~s~l~vPL~~-~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a~~~~~~~~l 144 (149)
T 2vjw_A 83 -----------LGGPALVLPLRA-TDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLASSQRRMSEL 144 (149)
T ss_dssp -----------CEEEEEEEEEEE-TTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred -----------CCCeEEEEEEcc-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999 57999999999985556999999999999999999999999999886654
No 14
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.76 E-value=2e-18 Score=172.79 Aligned_cols=169 Identities=25% Similarity=0.431 Sum_probs=139.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
.|+++|+++++.+|.+++++++|++++++.+++.++++.|.++++.+.++..|++++++.+++.+.+++++++|+|+++|
T Consensus 162 ~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d 241 (398)
T 1ykd_A 162 GFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLID 241 (398)
T ss_dssp CCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEE
Confidence 69999999999999999999999999999999999999999999999542779999999999999999999999999999
Q ss_pred CCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCC
Q psy8476 83 SETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRL 162 (421)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 162 (421)
++.+.++.. ... .|+. ...+.+| .+
T Consensus 242 ~~~~~l~~~---~~~-----------------------------------------~~~~--~~~~~~~---------~~ 266 (398)
T 1ykd_A 242 RDRHELWTK---ITQ-----------------------------------------DNGS--TKELRVP---------IG 266 (398)
T ss_dssp TTTTEEEEE---EEC-----------------------------------------SSSC--EEEEEEE---------TT
T ss_pred CCCCEEEEE---Eec-----------------------------------------CCCc--eeeeecc---------CC
Confidence 988765321 000 0000 0112333 67
Q ss_pred CcchhhhhhcCCEEeec-CCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecc
Q psy8476 163 ATIAKYVASTGQILNIG-DVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKI 226 (421)
Q Consensus 163 ~gi~g~v~~~g~~~~i~-d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~ 226 (421)
.|++|+|+++|+++.++ |+..+|++...+..+...++.++|++||||+..+|+++|||.+.++.
T Consensus 267 ~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 267 KGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp SHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred CchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 99999999999999999 99999986433223344577899999999997457999999999988
No 15
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.75 E-value=2.3e-17 Score=147.37 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=71.8
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAF 366 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~l 366 (421)
.++.++++++|+|+.++|+..+|++.. . ........+|+||+||.. +|+++|||.+.+..+ +.|+++|+++|+.+
T Consensus 95 ~~~~~~~~~~~~~~~i~d~~~~~~~~~-~--~~~~~~~~~s~l~vPL~~-~~~~~GvL~l~~~~~-~~f~~~d~~ll~~l 169 (184)
T 3p01_A 95 DPLTNEAIATGQIQVAANIAKDPKLAS-I--SQYQDNGIQSHVVIPITY-RNEMLGVLSLQWQQP-ISLREDELTLIHLS 169 (184)
T ss_dssp CHHHHHHHHHCSCEEESCGGGCHHHHT-C--HHHHHHTCCEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHHH
T ss_pred CcHHHHHHhhCCeEEEeccccCccccc-h--hHHHHhCccEEEEEEEEE-CCEEEEEEEeCcCCC-CCCCHHHHHHHHHH
Confidence 578899999999999999988765321 1 111123468999999999 579999999966654 69999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8476 367 AIFCGLGIHNTQM 379 (421)
Q Consensus 367 A~q~aiAlena~L 379 (421)
|+|+|+||+||++
T Consensus 170 A~q~aiAi~nAr~ 182 (184)
T 3p01_A 170 AQLVAIALTSSRC 182 (184)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 16
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.75 E-value=3.2e-17 Score=161.90 Aligned_cols=170 Identities=34% Similarity=0.452 Sum_probs=137.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
.|++.|+++++.+|.+++++++|++++++.+++.+++++|.++++.+.++..|++++++.+++.+++++++++|+|+++|
T Consensus 144 ~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d 223 (368)
T 1mc0_A 144 FFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLD 223 (368)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEe
Confidence 59999999999999999999999999999999999999999999999444359999999999999999999999999999
Q ss_pred CCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccceeeeecCCC--CCCccccCCCCcccCCCC
Q psy8476 83 SETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGP--GGEALVKSPGNTVCNTHS 160 (421)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~p~~~~~~~~~ 160 (421)
+ +.++.. .. .||. .......+|
T Consensus 224 ~--~~l~~~----~~-----------------------------------------~g~~~~~~~~~~~~~--------- 247 (368)
T 1mc0_A 224 Q--NELVAK----VF-----------------------------------------DGGVVDDESYEIRIP--------- 247 (368)
T ss_dssp S--SSEEEE----EE-----------------------------------------TTEECCCSTTCCEEC---------
T ss_pred C--CceEEE----Ee-----------------------------------------ccccccccccceeec---------
Confidence 9 333210 00 0000 000012233
Q ss_pred CCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccC-Cc
Q psy8476 161 RLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISE-RK 230 (421)
Q Consensus 161 ~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~-~~ 230 (421)
.+.|++|+|+++|+|+.++|+..+|++. +..+...++.++|++|+||+.++|+++|||.+.++.++ .|
T Consensus 248 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~--~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f 316 (368)
T 1mc0_A 248 ADQGIAGHVATTGQILNIPDAYAHPLFY--RGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWF 316 (368)
T ss_dssp TTSHHHHHHHHHCCCEEESCSTTCTTCC--CTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSC
T ss_pred CCCceeeeehhhCCEEEecCcccCcccc--hhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCC
Confidence 6799999999999999999999999863 33333346678999999999976799999999998876 45
No 17
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.74 E-value=8.7e-17 Score=142.49 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=60.2
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAF 366 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~l 366 (421)
+|++|+++++|+|++++|+..+|++. . ....++|++||||+. +|+++|||.+.++.. ..|+++|+++|+.+
T Consensus 82 eGi~G~v~~~g~~~~v~Dv~~~p~~~--~-----~~~~~~S~i~vPi~~-~g~viGVL~i~s~~~-~~F~~~d~~~L~~l 152 (167)
T 3mmh_A 82 RGVCGQAWAKGGTVVVGDVDAHPDHI--A-----CSSLSRSEIVVPLFS-DGRCIGVLDADSEHL-AQFDETDALYLGEL 152 (167)
T ss_dssp SHHHHHHHHHTSCEEESCGGGSTTCC--C-----SSTTCCEEEEEEEEE-TTEEEEEEEEEESST-TCCCHHHHHHHHHH
T ss_pred CChHHHHHhCCcEEEECCcccCcchh--h-----cCccCCeEEEEEecc-CCEEEEEEEEecCCC-CCCCHHHHHHHHHH
Confidence 45555555555555555555554421 0 112468999999998 689999999999887 48999999999999
Q ss_pred HHHHHHHHH
Q psy8476 367 AIFCGLGIH 375 (421)
Q Consensus 367 A~q~aiAle 375 (421)
|+++|.++.
T Consensus 153 A~~la~~i~ 161 (167)
T 3mmh_A 153 AKILEKRFE 161 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 18
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.74 E-value=5.3e-18 Score=150.17 Aligned_cols=152 Identities=12% Similarity=0.110 Sum_probs=99.7
Q ss_pred cccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeeecCCCCc----ccccCCCchHHHHHHHhCCEEEEcCCCCccc
Q psy8476 239 NVDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVKSPGNTV----CNTHSRLATIAKYVASTGQILNIGDVPSWMR 310 (421)
Q Consensus 239 ~~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~~~~~~~----~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~ 310 (421)
..+++++|.. +.+.+++++++++++++++.......+.... ....|.+.++.++++++|+++.+++...+.
T Consensus 3 ~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~~- 81 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHFDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQD- 81 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTTC-
T ss_pred CCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccccc-
Confidence 3556666654 5567889999999998876555444443221 123456689999999999999865443321
Q ss_pred cccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 311 EEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQ 390 (421)
Q Consensus 311 ~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~~~~ 390 (421)
.|... ........+|+||+||+. +|+++|||.+.++.. ..|+++|+.+|+.+|+|+|+||+||+||+++++..++.
T Consensus 82 -~~~~~-~~~~~~~~~S~l~vPL~~-~~~~iGvl~l~~~~~-~~f~~~d~~~l~~la~~~aiai~na~ly~~~~~~~~~~ 157 (165)
T 3o5y_A 82 -NFYEK-QYLAILDLKSILVIPIYS-KNKRVGVLSIGRKQQ-IDWSLDDLAFLEQLTDHLAVSIENVELYGQVLRSKQEW 157 (165)
T ss_dssp -CCTTH-HHHHTTTCCEEEEEEEEC-SSCEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred -ccccc-hHHHhhCCCEEEEeCeeE-CCEEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23221 111234579999999999 579999999999876 59999999999999999999999999999999888777
Q ss_pred HHHHH
Q psy8476 391 KVFQR 395 (421)
Q Consensus 391 ~~~~e 395 (421)
..++.
T Consensus 158 ~~~~~ 162 (165)
T 3o5y_A 158 EDTFK 162 (165)
T ss_dssp -----
T ss_pred HHHHh
Confidence 66554
No 19
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.73 E-value=6.7e-17 Score=139.82 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=75.6
Q ss_pred CchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476 286 LATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEA 365 (421)
Q Consensus 286 ~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~ 365 (421)
..++.++++++++++.++|...+++....... .....+|++|+||.. +|+++|||.+.++.+ +.|+++|+++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~s~l~vPl~~-~~~~~Gvl~l~~~~~-~~f~~~~~~~l~~ 152 (171)
T 3ci6_A 78 SEGLVGLVGQREEIVNLENASKHERFAYLPET---GEEIYNSFLGVPVMY-RRKVMGVLVVQNKQP-QDFSEAAESFLVT 152 (171)
T ss_dssp TSHHHHHHHHHTSCEEESSGGGSTTC------------CCCEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHH
T ss_pred cCCeehhhhccCceEEecCCCcCcchhccccc---cccccceEEEEeEEE-CCEEEEEEEEecCCC-CCCCHHHHHHHHH
Confidence 36899999999999999998877653322111 122358999999998 579999999999976 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8476 366 FAIFCGLGIHNTQMYENA 383 (421)
Q Consensus 366 lA~q~aiAlena~L~~e~ 383 (421)
+|.++|.||+|+++|+++
T Consensus 153 la~~~a~al~~~~l~~~l 170 (171)
T 3ci6_A 153 LCAQLSGVIAHAHAVGNI 170 (171)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999865
No 20
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=177.22 Aligned_cols=170 Identities=34% Similarity=0.476 Sum_probs=137.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
.|+++|+++++.+|.++|++++|++++++.+++.++++.|.++++.+.++..|++++++.+++.+.++++|++|+|+++|
T Consensus 144 ~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d 223 (691)
T 3ibj_A 144 LFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLD 223 (691)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEe
Confidence 69999999999999999999999999999999999999999999999543679999999999999999999999999999
Q ss_pred CCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccceeeeecCCCC--CCccccCCCCcccCCCC
Q psy8476 83 SETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPG--GEALVKSPGNTVCNTHS 160 (421)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~p~~~~~~~~~ 160 (421)
+ +.+... ... |+.. .....++|
T Consensus 224 ~--~~l~~~--~~~-------------------------------------------g~~~~~~~~~~~~~--------- 247 (691)
T 3ibj_A 224 Q--NELVAK--VFD-------------------------------------------GGVVDDESYEIRIP--------- 247 (691)
T ss_dssp S--SEEEEE--CCS-------------------------------------------SSCCSSCCCEEEEE---------
T ss_pred C--CeEEEE--eec-------------------------------------------CCcccccccceecc---------
Confidence 9 333110 000 0000 00112333
Q ss_pred CCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCC-c
Q psy8476 161 RLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISER-K 230 (421)
Q Consensus 161 ~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~-~ 230 (421)
.+.|++|+|+++|+|+.++|+..||++ .+..+...++.++|++||||+.++|+++||+.+.++.+++ |
T Consensus 248 ~~~gi~g~v~~~g~~v~i~d~~~d~~~--~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f 316 (691)
T 3ibj_A 248 ADQGIAGHVATTGQILNIPDAYAHPLF--YRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWF 316 (691)
T ss_dssp TTSHHHHHHHHHCSCEEESCSTTSTTC--------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSC
T ss_pred CCCCHHHHHHHhCCEEEecCcccCccc--cchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCC
Confidence 679999999999999999999999986 3445566778899999999999867999999999998873 5
No 21
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=99.72 E-value=1e-16 Score=145.50 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAF 366 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~l 366 (421)
+|++|+++++|++++++|++.+|++. . ....++|+|||||+. +|+++|||.+.++.. ..|+++|+++|+.+
T Consensus 93 eGi~G~aa~tg~~i~V~Dv~~~p~~~--~-----~~~~~~S~l~VPI~~-~g~viGVL~i~s~~~-~~F~e~d~~~L~~l 163 (195)
T 1vhm_A 93 RGVCGTAVARNQVQRIEDVHVFDGHI--A-----CDAASNSEIVLPLVV-KNQIIGVLDIDSTVF-GRFTDEDEQGLRQL 163 (195)
T ss_dssp SHHHHHHHHHTSCEEESCTTTCTTCC--C-----SCCCCSEEEEEEEEE-TTEEEEEEEEEESST-TCCCHHHHHHHHHH
T ss_pred CChHHHHHhcCCEEEECCcccCcchh--h-----cCCCccEEEEEeEeE-CCEEEEEEEecCCCC-CCCCHHHHHHHHHH
Confidence 45555555555555555555554421 1 112358999999998 689999999999887 48999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8476 367 AIFCGLGIHNTQMYE 381 (421)
Q Consensus 367 A~q~aiAlena~L~~ 381 (421)
|.++|++++|+++.+
T Consensus 164 A~~ia~ale~a~~~~ 178 (195)
T 1vhm_A 164 VAQLEKVLATTDYKK 178 (195)
T ss_dssp HHHHHHHHHTSSGGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
No 22
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.70 E-value=1.5e-17 Score=151.48 Aligned_cols=86 Identities=8% Similarity=0.153 Sum_probs=68.2
Q ss_pred HHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q psy8476 293 VASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGL 372 (421)
Q Consensus 293 v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~ai 372 (421)
++++|+|+.++|++.++... ...+...++..+|+|||||+. +|+++|+|.+.++.+ +.|+++|+++|+.+|+|+|+
T Consensus 118 ~~~~~~~i~i~d~~~~~~~~--~~~~~l~~~~~~S~l~vPi~~-~~~l~GvL~~~~~~~-~~~~~~e~~ll~~la~~~a~ 193 (208)
T 2lb5_A 118 SWGLSARVPLGEPLQRPVDP--CHVHYLKSMGVASSLVVPLMH-HQELWGLLVSHHAEP-RPYSQEELQVVQLLADQVSI 193 (208)
T ss_dssp CCCCCSCCCCCSCSSCCCCH--HHHHHHHHTTCSEEEEEEEEE-TTEEEEEEEEEESCC-CCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhccCCH--HHHHHHHhcCCcEEEEEEEEE-CCEeEEEEEEeeCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 46778888888887653221 111112345679999999999 579999999999955 69999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8476 373 GIHNTQMYEN 382 (421)
Q Consensus 373 Alena~L~~e 382 (421)
||+|+++|+-
T Consensus 194 ai~~a~l~~~ 203 (208)
T 2lb5_A 194 AIAQAELSLH 203 (208)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999953
No 23
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.69 E-value=1.7e-16 Score=135.57 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=106.2
Q ss_pred ccccHHHHHh----cCCCCCCcceeEEEEEcCCCCeeeee--cCCCC--cc--cccCCCchHHHHHHHhCCEEEEcCCCC
Q psy8476 238 NNVDIEDILA----HTPEDPSIAFSTVFELGGPGGEALVK--SPGNT--VC--NTHSRLATIAKYVASTGQILNIGDVPS 307 (421)
Q Consensus 238 ~~~dl~~IL~----~~~~~l~a~~~~i~l~d~~~~~~~~~--~~~~~--~~--~~~~~~~gi~g~v~~tg~~v~i~D~~~ 307 (421)
++.++++++. .+.+.++++++.|+++|++ ..+... .+... .. ...+.+.|+.++++++++++.++|...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 3456666554 4556788999999999954 443332 23221 11 245668999999999999999999888
Q ss_pred ccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 308 WMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENAC 384 (421)
Q Consensus 308 ~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~ 384 (421)
++++.. ... .....+|++|+||.. +|+++|||.+.++.+++.|+++|+++|+.+|.|+|+||+|+++|++.+
T Consensus 82 ~~~~~~--~~~--~~~~~~s~l~vPl~~-~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a~l~~~~~ 153 (153)
T 2w3g_A 82 HPASIG--FPP--YHPPMRTFLGVPVRV-RDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANARLYQQAK 153 (153)
T ss_dssp STTCCC--CCT--TCCCCCCEEEEEEEE-TTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhcC--CCC--cCCCCCeEEEeeEEE-CCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 765322 111 223569999999998 679999999999987569999999999999999999999999998753
No 24
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.65 E-value=4.9e-16 Score=137.48 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=70.7
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCc-EEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKVTRQPFTDCDVSIFEA 365 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~-vIGVl~v~~~~~~~~Fs~~d~~lL~~ 365 (421)
.|+.|+++++|+|+.++|+..++++.+.+. .... ..+|++|+||..+ ++ ++|||.++++.....|+++|+++|+.
T Consensus 72 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~--g~~s~~~vPl~~~-~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 72 ETYIGEAFLSNRLQFVNDTQYMTKPLTREL-MQKE--GIKSFAHIPISRK-GEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp TSHHHHHHHHTSCEEESCGGGCSCHHHHHH-HHHT--TCCEEEEEEECCT-TSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCchhhhhhcCCCEEecChhcCCchhhHHH-HHhc--CcceEEEEEEEeC-CCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 589999999999999999887654322111 1122 3589999999995 58 99999999943346999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy8476 366 FAIFCGLGIHNTQMYENACK-LMAKQKVFQR 395 (421)
Q Consensus 366 lA~q~aiAlena~L~~e~~~-~~~~~~~~~e 395 (421)
+|.|+|+||+|++.+++.++ ..++.+.+++
T Consensus 148 la~~~a~al~~a~~~~~~~~~~~~~~~~l~~ 178 (181)
T 2qyb_A 148 LAGQLAQAVKIVTEMEAKEREREEKERILLE 178 (181)
T ss_dssp HHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999976655544 3444444443
No 25
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.63 E-value=1.7e-16 Score=136.47 Aligned_cols=138 Identities=9% Similarity=0.004 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCcceeEEEEEcCCCCeeeeec--CCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccccCCcccccC
Q psy8476 244 DILAHTPEDPSIAFSTVFELGGPGGEALVKS--PGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEES 321 (421)
Q Consensus 244 ~IL~~~~~~l~a~~~~i~l~d~~~~~~~~~~--~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~ 321 (421)
.++..+.+.++++.++|+++|+++ .+.... +..........+.|..|+++++|+|+.++|+..+|++....... .
T Consensus 10 ~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~--~ 86 (151)
T 3hcy_A 10 ATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQRAVDGHSPWITGANEPEPIFVENVDDAEFSRELKESI--V 86 (151)
T ss_dssp HHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHHHHTCBCCSCC---CCCCCEEESCGGGSCCCHHHHHHH--H
T ss_pred HHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHHhhccCCCchhhhhhcCCcEEEeChhhCcccchhHHHH--H
Confidence 344556677899999999999987 443332 22211112245678899999999999999998876532111111 1
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKL 386 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~ 386 (421)
....+|++|+||.. +|+++|||.++++.+ +.|+++|+++|+.+|+|+|+||+|+++.++.++.
T Consensus 87 ~~g~~s~~~vPl~~-~~~~iGvl~~~~~~~-~~f~~~~~~ll~~~a~~~a~ai~~~r~~~~lr~a 149 (151)
T 3hcy_A 87 GEGIAALGFFPLVT-EGRLIGKFMTYYDRP-HRFADSEIGMALTIARQLGFSIQRMRAEYARRQA 149 (151)
T ss_dssp HHTCCEEEEEEEES-SSSEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hcCchheEEeceEE-CCEEEEEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22458999999999 689999999999877 4899999999999999999999999987665443
No 26
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=99.63 E-value=6.3e-15 Score=132.18 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=60.8
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAF 366 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~l 366 (421)
+|++|+++++|++++++|+..+|++. .....++|+|||||+..+|+++|||.++++.. ..|+++|+++|+.+
T Consensus 98 ~Gi~G~aa~~g~~v~v~Dv~~dp~~~-------~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~-~~F~~~d~~~L~~l 169 (180)
T 1f5m_A 98 KGVCGTAASTKETQIVPDVNKYPGHI-------ACDGETKSEIVVPIISNDGKTLGVIDIDCLDY-EGFDHVDKEFLEKL 169 (180)
T ss_dssp SHHHHHHHHHTSCEEESCGGGSTTCC-------CSSTTCCEEEEEEEECTTSCEEEEEEEEESST-TCCCHHHHHHHHHH
T ss_pred CcchhhhhhcCCEEEeCCcccCcccc-------ccCcccceEEEEEEEcCCCeEEEEEEeccCCC-CCcCHHHHHHHHHH
Confidence 45555666666666666555554421 11235699999999985679999999999887 58999999999999
Q ss_pred HHHHHHHH
Q psy8476 367 AIFCGLGI 374 (421)
Q Consensus 367 A~q~aiAl 374 (421)
|.++|.++
T Consensus 170 a~~~a~~~ 177 (180)
T 1f5m_A 170 AKLINKSC 177 (180)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999876
No 27
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=99.59 E-value=8e-17 Score=177.51 Aligned_cols=179 Identities=34% Similarity=0.518 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
.|+++|+++++.+|.++|+||+|++++++.+++.++++.|.++++.|.++..|++++++.|++.+++++++++|+|+|+|
T Consensus 297 ~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d 376 (878)
T 3bjc_A 297 TFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVD 376 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEc
Confidence 79999999999999999999999999999999999999999999998666679999999999999999999999999999
Q ss_pred CCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCC
Q psy8476 83 SETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRL 162 (421)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 162 (421)
++...+.. ......+.. ..... .++.. ....+| .+
T Consensus 377 ~~~~~l~a--~a~~~~s~~-------------------~~~~~--------------~~~~~-~~~~~p---------~~ 411 (878)
T 3bjc_A 377 EDCSDSFS--SVFHMECEE-------------------LEKSS--------------DTLTR-EHDANK---------IN 411 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccchhH--HHhhccccc-------------------ccccc--------------ccccc-cccccc---------hh
Confidence 97665421 111100000 00000 00000 012233 67
Q ss_pred CcchhhhhhcCCEEeecCCCCccccccCcccccCCC---ceeeeeEEeeeEeCC-CcEEEEEEeeecccC
Q psy8476 163 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESD---FTTRCILCMPIFNGQ-KTVIGVAQLINKISE 228 (421)
Q Consensus 163 ~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~---~~~~s~l~vPl~~~~-~~vIGVl~l~~~~~~ 228 (421)
.|++|+|+++|++++++|+..||++. +..+...+ +.++|+||+||+.++ |+++|||.++++.++
T Consensus 412 ~gi~g~v~~~g~~v~i~D~~~d~r~~--~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~ 479 (878)
T 3bjc_A 412 YMYAQYVKNTMEPLNIPDVSKDKRFP--WTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEE 479 (878)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhHHHHHhhcCCeeeecCcccccccc--cccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCC
Confidence 99999999999999999999999863 33444455 789999999999975 799999999998774
No 28
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=99.58 E-value=6.3e-15 Score=129.23 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=97.0
Q ss_pred ccccHHHHHhcC----CCCCC-cceeEEEEEcCCCCeeeeecCCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccc
Q psy8476 238 NNVDIEDILAHT----PEDPS-IAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREE 312 (421)
Q Consensus 238 ~~~dl~~IL~~~----~~~l~-a~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~ 312 (421)
...|+...|.++ .+.+. .+++++|+++++...+..+.|.. .....+.++|++|+++++|+|++++|+..+|++.
T Consensus 28 ~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~~L~l~~~~G~~-a~~ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~i 106 (160)
T 3ksh_A 28 DEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILGPFQGHP-ACVHIPIGKGVCGTAVSERRTQVVADVHQFKGHI 106 (160)
T ss_dssp TCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETTEEEEEEEEESC-CCSEEETTSHHHHHHHHHTSCEEESCGGGSTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECCEEEEEeccCCc-ccEEeeCCCCHHHHHHhhCCEEEECCcccCcccc
Confidence 344555544443 23333 78999999987644444455432 2345688999999999999999999999988742
Q ss_pred cCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8476 313 VCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGI 374 (421)
Q Consensus 313 f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAl 374 (421)
. ....++|.+||||+. +|+++|||.+.++..+ .|+++|+++|+.+|+++|..+
T Consensus 107 --~-----~~~~~~Sei~VPI~~-~g~viGVL~i~s~~~~-~F~e~D~~~L~~lA~~la~~~ 159 (160)
T 3ksh_A 107 --A-----CDANSKSEIVVPIFK-DDKIIGVLDIDAPITD-RFDDNDKEHLEAIVKIIEKQL 159 (160)
T ss_dssp --G-----GGTTCSEEEEEEEEE-TTEEEEEEEEEESSSS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred --c-----cCcccCceEEEEEEE-CCEEEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 1 113469999999998 6899999999998874 899999999999999998765
No 29
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=99.58 E-value=6.3e-15 Score=130.45 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=96.9
Q ss_pred ccccHHHHHhcC----CCCCC-cceeEEEEEcCCCCeeeeecCCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccc
Q psy8476 238 NNVDIEDILAHT----PEDPS-IAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREE 312 (421)
Q Consensus 238 ~~~dl~~IL~~~----~~~l~-a~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~ 312 (421)
...|+...|.++ .+.+. ..++++|+++++...+..+.|.. .....+.++|++|+++++|+|++++|+..+|++.
T Consensus 29 ~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~~L~l~a~~G~~-a~~ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~i 107 (171)
T 3rfb_A 29 GETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQGGV-SCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYI 107 (171)
T ss_dssp TCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSSEEEEEEEESSS-CCCEEETTSHHHHHHHHTTSCEEESCTTSCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECCEEEEEeccCCc-cceEeeCCcCHHHHHHhhCCEEEECCcccCcccc
Confidence 344544444433 23343 78899999987543344444442 2346788999999999999999999999988742
Q ss_pred cCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8476 313 VCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGI 374 (421)
Q Consensus 313 f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAl 374 (421)
- ....++|.|||||+. +|++||||.+.++..+ .|+++|+++|+.+|.++|.++
T Consensus 108 ~-------~~~~~~Sei~VPI~~-~g~viGVL~i~s~~~~-~F~e~D~~~L~~lA~~la~~~ 160 (171)
T 3rfb_A 108 S-------CDSLAKSEIVVPMMK-NGQLLGVLDLDSSEIE-DYDAMDRDYLEQFVAILLEKT 160 (171)
T ss_dssp C-------SCTTCCEEEEEEEEE-TTEEEEEEEEEESSTT-CCCHHHHHHHHHHHHHHHHSC
T ss_pred c-------cCcccCceEEEEEEE-CCEEEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 1 123569999999998 6899999999998874 899999999999999999876
No 30
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.56 E-value=4e-15 Score=131.46 Aligned_cols=83 Identities=8% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8476 294 ASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLG 373 (421)
Q Consensus 294 ~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiA 373 (421)
+++|+++.++|++.++.. ....+...++..+|+|||||+. +|+++|+|.+.++.+ +.|+++|+++|+.+|+|+|+|
T Consensus 89 ~~~~~~~~i~d~~~~~~~--~~~~~~~~~~~~~s~l~vPi~~-~~~l~G~l~~~~~~~-~~~~~~e~~~l~~la~~~a~a 164 (172)
T 2k2n_A 89 WGLSARVPLGEPLQRPVD--PCHVHYLKSMGVASSLVVPLMH-HQELWGLLVSHHAEP-RPYSQEELQVVQLLADQVSIA 164 (172)
T ss_dssp CCCSSCCCCCSSSSCCCC--HHHHHHHHTTTCSEEEECCCSC-SSCCCEEEEEEECSC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCceeccchhhcCCC--HHHHHHHHhcCCeEEEEEEEEE-CCEEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 677889999998765432 1112222356789999999998 579999999999965 699999999999999999999
Q ss_pred HHHHHHH
Q psy8476 374 IHNTQMY 380 (421)
Q Consensus 374 lena~L~ 380 (421)
|+|++||
T Consensus 165 i~~a~L~ 171 (172)
T 2k2n_A 165 IAQAELS 171 (172)
T ss_dssp HHHHHHH
T ss_pred HHHhhhc
Confidence 9999998
No 31
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.55 E-value=1.6e-14 Score=128.41 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q psy8476 292 YVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCG 371 (421)
Q Consensus 292 ~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~a 371 (421)
..+++|+++.|+|++.++.... ..+....+..+|+|+|||.. +|+++|+|.+.+....+.|+++|+++|+.+|+|+|
T Consensus 73 ~~~~~g~~~~I~Dv~~~~~~~~--~~~~l~~~~v~S~L~vPi~~-~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~ 149 (171)
T 4glq_A 73 EAYRQGRIQATTDIFKAGLTEC--HLNQLRPLKVRANLVVPMVI-DDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGS 149 (171)
T ss_dssp HHHHTTCCEEESCGGGTTCCHH--HHHHHGGGTEEEEEEEEEEE-TTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEcCcCcCCCCHH--HHHHHHhcCCcEEEEEEEEE-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4678888999988875321111 11122345779999999999 57999999999965567999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8476 372 LGIHNTQMYENACKL 386 (421)
Q Consensus 372 iAlena~L~~e~~~~ 386 (421)
+||+||+||++++..
T Consensus 150 iAi~qa~l~~~~~~~ 164 (171)
T 4glq_A 150 LVLERLHFLEQTIAS 164 (171)
T ss_dssp HHHHHHC--------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 32
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=99.44 E-value=1.2e-12 Score=115.74 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhC-CCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchh
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLK-CERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIE 119 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~-a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (421)
.|.++.+.+ +...|+...|..++..+.+.++ .+.|++||++++ +|.. .
T Consensus 19 ll~~l~~ll-~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l-----~----------------------- 67 (171)
T 3rfb_A 19 LNEELSFLL-EGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVL-----G----------------------- 67 (171)
T ss_dssp HHHHHHHHH-TTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEE-----E-----------------------
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEE-----E-----------------------
Confidence 455555555 6667999999999999999997 999999999874 3421 0
Q ss_pred hhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCc
Q psy8476 120 DILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDF 199 (421)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~ 199 (421)
+..|.. ..+++| .|+|++|+|+++|+|++|+|+..+|+|.. ...
T Consensus 68 ------------------a~~G~~--a~~ri~---------~GeGv~G~va~tg~~i~V~Dv~~~p~~i~-------~~~ 111 (171)
T 3rfb_A 68 ------------------PFQGGV--SCIRIA---------LGKGVCGEAAHFQETVIVGDVTTYLNYIS-------CDS 111 (171)
T ss_dssp ------------------EEESSS--CCCEEE---------TTSHHHHHHHHTTSCEEESCTTSCSSCCC-------SCT
T ss_pred ------------------eccCCc--cceEee---------CCcCHHHHHHhhCCEEEECCcccCccccc-------cCc
Confidence 011111 123444 78999999999999999999999998742 234
Q ss_pred eeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 200 TTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 200 ~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
.++|++||||+.+ |++||||.+.+.....|
T Consensus 112 ~~~Sei~VPI~~~-g~viGVL~i~s~~~~~F 141 (171)
T 3rfb_A 112 LAKSEIVVPMMKN-GQLLGVLDLDSSEIEDY 141 (171)
T ss_dssp TCCEEEEEEEEET-TEEEEEEEEEESSTTCC
T ss_pred ccCceEEEEEEEC-CEEEEEEEEecCCCCCC
Confidence 5799999999985 69999999999887766
No 33
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=99.40 E-value=1.6e-12 Score=113.83 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhC-CCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchh
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLK-CERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIE 119 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~-a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (421)
.|.++...+ +...|+...|..++..+.+.++ .++|++||++++ +|.. .
T Consensus 18 ll~~l~~ll-~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l-----~----------------------- 66 (160)
T 3ksh_A 18 LKKQAASLI-EDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELIL-----G----------------------- 66 (160)
T ss_dssp HHHHHHHTT-TTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEE-----E-----------------------
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEE-----E-----------------------
Confidence 344455544 6667999999999999999997 999999999874 3421 0
Q ss_pred hhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCc
Q psy8476 120 DILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDF 199 (421)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~ 199 (421)
+..|.. ..+++| .|+|++|+|+++|+|++|+|+..+|+|.. ...
T Consensus 67 ------------------~~~G~~--a~~ri~---------~GeGv~G~aa~~~~~i~V~Dv~~~p~~i~-------~~~ 110 (160)
T 3ksh_A 67 ------------------PFQGHP--ACVHIP---------IGKGVCGTAVSERRTQVVADVHQFKGHIA-------CDA 110 (160)
T ss_dssp ------------------EEEESC--CCSEEE---------TTSHHHHHHHHHTSCEEESCGGGSTTCCG-------GGT
T ss_pred ------------------eccCCc--ccEEee---------CCCCHHHHHHhhCCEEEECCcccCccccc-------cCc
Confidence 011111 123444 78999999999999999999999998742 124
Q ss_pred eeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 200 TTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 200 ~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
.++|++||||+.+ |++||||.+.++....|
T Consensus 111 ~~~Sei~VPI~~~-g~viGVL~i~s~~~~~F 140 (160)
T 3ksh_A 111 NSKSEIVVPIFKD-DKIIGVLDIDAPITDRF 140 (160)
T ss_dssp TCSEEEEEEEEET-TEEEEEEEEEESSSSCC
T ss_pred ccCceEEEEEEEC-CEEEEEEEEecCCCCCC
Confidence 5799999999985 69999999999887776
No 34
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.35 E-value=4.3e-12 Score=109.90 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC----chhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCC
Q psy8476 55 NLECLVTKIMTEARDLLKCERCAVFLLKSET----SEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPS 130 (421)
Q Consensus 55 dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 130 (421)
|++++|+.+++.+++++++++|+|+|+|+++ +.+... ...++. ++
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~--a~~g~~--------------------------~~--- 49 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIV--EVAGAV--------------------------PA--- 49 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEE--EEEETS--------------------------CG---
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEE--EEecCC--------------------------hH---
Confidence 5789999999999999999999999999875 544210 000000 00
Q ss_pred ccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeE
Q psy8476 131 IAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIF 210 (421)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~ 210 (421)
.. ....+| .+.|++|+|+++|+|++++|+..|| +.+|+|||||+
T Consensus 50 -------~~------~~~~~~---------~~~g~~g~v~~~g~~v~v~d~~~d~--------------~~~s~l~vPL~ 93 (149)
T 2vjw_A 50 -------EV------EASAIP---------VQDNAIGQAFRDRAPRRLDVLDGPG--------------LGGPALVLPLR 93 (149)
T ss_dssp -------GG------TTCEEE---------SSSSHHHHHHHHCCCEEESCCCTTS--------------CEEEEEEEEEE
T ss_pred -------hh------cCcccC---------CCCCHHHHHhhcCceEEecCcccCC--------------CCCeEEEEEEc
Confidence 00 012233 6789999999999999999999876 47899999999
Q ss_pred eCCCcEEEEEEeeec-ccCCc
Q psy8476 211 NGQKTVIGVAQLINK-ISERK 230 (421)
Q Consensus 211 ~~~~~vIGVl~l~~~-~~~~~ 230 (421)
.+ |+++|||.++++ .++.|
T Consensus 94 ~~-~~~~GvL~l~~~~~~~~f 113 (149)
T 2vjw_A 94 AT-DTVAGVLVAVQGSGARPF 113 (149)
T ss_dssp ET-TEEEEEEEEEEETTCCCC
T ss_pred cC-CeEEEEEEEeeCCCCCCC
Confidence 85 699999999998 55556
No 35
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=99.16 E-value=1.9e-10 Score=95.02 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=96.2
Q ss_pred ccccHHHHHhcCC----CCCCcceeEEEEEcCCCCeeeeecCCCC------ccccc---CCCchHHHHHHHhCCEEEEcC
Q psy8476 238 NNVDIEDILAHTP----EDPSIAFSTVFELGGPGGEALVKSPGNT------VCNTH---SRLATIAKYVASTGQILNIGD 304 (421)
Q Consensus 238 ~~~dl~~IL~~~~----~~l~a~~~~i~l~d~~~~~~~~~~~~~~------~~~~~---~~~~gi~g~v~~tg~~v~i~D 304 (421)
...|++++++... +..++.+..+|++|.++.++......+. ..... |-.-.+.....+.++-+..+|
T Consensus 10 ~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll~~d 89 (162)
T 3eea_A 10 GLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTD 89 (162)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEEESC
T ss_pred ccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCccccCC
Confidence 4456777665533 4567889999999999998765432221 11112 233456667888888888877
Q ss_pred CCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 305 VPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYEN 382 (421)
Q Consensus 305 ~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e 382 (421)
....- -+.+.+.+.. ..-.+++||+..+ ++||||+.+.+.....+|+.+|+.+|..+|+++|+|++|++||+|
T Consensus 90 p~~s~--l~tp~l~k~~--~~~~ILgVPL~~g-~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAAIAIdnArLldE 162 (162)
T 3eea_A 90 PGSSD--LLTPKLRKLL--RNLCVLAVPMVVR-TQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALVVSHMQLFDE 162 (162)
T ss_dssp GGGCT--TSCHHHHHHT--TTEEEEEEEEEET-TEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCcch--hccHHHHHHH--hhCeEEEecceeC-CEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 54310 1111111111 2357999999996 599999999999986699999999999999999999999999875
No 36
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.15 E-value=3.3e-11 Score=102.96 Aligned_cols=117 Identities=10% Similarity=0.096 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccc
Q psy8476 54 SNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAF 133 (421)
Q Consensus 54 ~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 133 (421)
.|++++++.+++.+.+++++++|+|+++|++. .+... ...
T Consensus 2 ~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~----a~~----------------------------------- 41 (151)
T 3hcy_A 2 NAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFV----AAR----------------------------------- 41 (151)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEE----EEE-----------------------------------
T ss_pred ccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEE----eeC-----------------------------------
Confidence 48899999999999999999999999999976 44210 000
Q ss_pred eeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCC
Q psy8476 134 STVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQ 213 (421)
Q Consensus 134 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~ 213 (421)
|-+ .. .... ..+.|++|+++++|+|+.++|+..||++...+ +.....+.+|++|+||+. +
T Consensus 42 ------g~~-~~-~~~~---------~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~--~~~~~~g~~s~~~vPl~~-~ 101 (151)
T 3hcy_A 42 ------GLS-EH-YQRA---------VDGHSPWITGANEPEPIFVENVDDAEFSRELK--ESIVGEGIAALGFFPLVT-E 101 (151)
T ss_dssp ------SCC-HH-HHHH---------TCBCCSCC---CCCCCEEESCGGGSCCCHHHH--HHHHHHTCCEEEEEEEES-S
T ss_pred ------CCC-HH-HHhh---------ccCCCchhhhhhcCCcEEEeChhhCcccchhH--HHHHhcCchheEEeceEE-C
Confidence 000 00 0011 14678999999999999999999998752211 112235678999999998 5
Q ss_pred CcEEEEEEeeecccCCc
Q psy8476 214 KTVIGVAQLINKISERK 230 (421)
Q Consensus 214 ~~vIGVl~l~~~~~~~~ 230 (421)
|+++||+.++++.+..|
T Consensus 102 ~~~iGvl~~~~~~~~~f 118 (151)
T 3hcy_A 102 GRLIGKFMTYYDRPHRF 118 (151)
T ss_dssp SSEEEEEEEEESSCCCC
T ss_pred CEEEEEEEEecCCCCCC
Confidence 79999999999877766
No 37
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.14 E-value=1.2e-10 Score=98.64 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=87.5
Q ss_pred ccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCc
Q psy8476 52 EQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSI 131 (421)
Q Consensus 52 ~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 131 (421)
+.+|++++++.+++.+++++++++|+|+++|++ +.+... .
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~----~----------------------------------- 42 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHF----V----------------------------------- 42 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEE----E-----------------------------------
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEE----E-----------------------------------
Confidence 456899999999999999999999999999954 443210 0
Q ss_pred cceeeeecCCCCCC-cc-ccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeee
Q psy8476 132 AFSTVFELGGPGGE-AL-VKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPI 209 (421)
Q Consensus 132 ~~~~~~~~g~~~~~-~~-~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl 209 (421)
..|-+... .. ..+| .+.|++|+++++|+|+.++|+..+|++...+. .....+|++|+||
T Consensus 43 ------~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~s~l~vPl 103 (153)
T 2w3g_A 43 ------YEGIDEETVRRIGHLP---------KGLGVIGLLIEDPKPLRLDDVSAHPASIGFPP----YHPPMRTFLGVPV 103 (153)
T ss_dssp ------EESCCHHHHHHHCSCC---------CSCTHHHHHHHSCSCEEESSGGGSTTCCCCCT----TCCCCCCEEEEEE
T ss_pred ------EecCCHHHHHhhccCC---------CCCCHHHHHHhcCCcEEecCcccCchhcCCCC----cCCCCCeEEEeeE
Confidence 00000000 00 0222 57899999999999999999999887643221 3457899999999
Q ss_pred EeCCCcEEEEEEeeecccC-Cc
Q psy8476 210 FNGQKTVIGVAQLINKISE-RK 230 (421)
Q Consensus 210 ~~~~~~vIGVl~l~~~~~~-~~ 230 (421)
+.+ |+++|||.+.++.++ .|
T Consensus 104 ~~~-~~~~Gvl~l~~~~~~~~f 124 (153)
T 2w3g_A 104 RVR-DESFGTLYLTDKTNGQPF 124 (153)
T ss_dssp EET-TEEEEEEEEEEETTSCCC
T ss_pred EEC-CEEEEEEEEeeCCCCCCC
Confidence 975 699999999998874 45
No 38
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.97 E-value=3.3e-09 Score=93.33 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCccc
Q psy8476 54 SNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAF 133 (421)
Q Consensus 54 ~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 133 (421)
++++++++.+++.+.+++++|+++++|+++++-.+.. ..+ +...
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L~l~a-----~~~---------------------------~~~~---- 47 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANETLKLSH-----VYP---------------------------KGSH---- 47 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEEEEEE-----EES---------------------------TTCC----
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECCEEEEEE-----Eec---------------------------CCcc----
Confidence 5899999999999999999999999999875432210 000 0000
Q ss_pred eeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCC
Q psy8476 134 STVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQ 213 (421)
Q Consensus 134 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~ 213 (421)
.++. ...+| .+.+++++|+++|+++.+++...++.+. .. .......++|++|+||+.+
T Consensus 48 --~~~~-------~~~ip---------~~~s~~~~v~~~~~~~v~~~~~~~~~~~--~~-~~~~~~~~~S~l~vPL~~~- 105 (165)
T 3o5y_A 48 --SLDI-------GSTIP---------KEQSLYWSALDQRQTIFRSLTDTQDNFY--EK-QYLAILDLKSILVIPIYSK- 105 (165)
T ss_dssp --SSCT-------TCEEC---------STTCHHHHHHHHTSCEEEESCCTTCCCT--TH-HHHHTTTCCEEEEEEEECS-
T ss_pred --cccc-------ccccC---------CccCHHHHHHHhCCeEEEcCcccccccc--cc-hHHHhhCCCEEEEeCeeEC-
Confidence 0000 01233 5689999999999999865444332331 11 1224567899999999986
Q ss_pred CcEEEEEEeeecccCCc
Q psy8476 214 KTVIGVAQLINKISERK 230 (421)
Q Consensus 214 ~~vIGVl~l~~~~~~~~ 230 (421)
|++||||.+.++.++.|
T Consensus 106 ~~~iGvl~l~~~~~~~f 122 (165)
T 3o5y_A 106 NKRVGVLSIGRKQQIDW 122 (165)
T ss_dssp SCEEEEEEEEESSCCCC
T ss_pred CEEEEEEEEEeCCCCCC
Confidence 69999999999887766
No 39
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.91 E-value=4e-08 Score=100.77 Aligned_cols=90 Identities=9% Similarity=-0.047 Sum_probs=77.5
Q ss_pred CccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8476 323 FTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGI 402 (421)
Q Consensus 323 ~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~~~~~~~~e~~~~~~~ 402 (421)
+..++.|.|||+. +|++.|.|.+-+..+ +.++..+..+++.+|.|+|++|+.+.++++.++..+..+...++...+..
T Consensus 254 mgV~AsLvvpI~~-~~~LWGLl~~Hh~~p-R~w~~~er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~ 331 (505)
T 3nhq_A 254 MGVRASMSISIVV-GGKLWGLFSCHHMSP-KLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARD 331 (505)
T ss_dssp HTCCEEEEEEEEC-SSSEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEE-CCEEEEEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999 579999999998875 79999999999999999999999999999998888888777777777777
Q ss_pred cchhHHHHHHHH
Q psy8476 403 GIQNAQLFEMSI 414 (421)
Q Consensus 403 ~~~~~~~~~~~~ 414 (421)
..+.++.|.+..
T Consensus 332 ~~~~~~~l~~~~ 343 (505)
T 3nhq_A 332 ADDLFGALAHPD 343 (505)
T ss_dssp HCCHHHHHHCTT
T ss_pred cCCHHHHHHHhh
Confidence 666777766544
No 40
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.84 E-value=1.3e-07 Score=97.27 Aligned_cols=87 Identities=8% Similarity=-0.056 Sum_probs=71.3
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCG 401 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~~~~~~~~e~~~~~~ 401 (421)
.+..++.|.|||+. +|++.|.|.+-+..+ +.++..+..+++.+|.|+|++|..+.++++.++..+..+....++..+.
T Consensus 266 nmgV~AsLvvpI~~-~~~LWGLl~~Hh~~p-R~w~~~er~~~e~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~ 343 (520)
T 3zq5_A 266 NMGVGASLTISLIK-DGHLWGLIACHHQTP-KVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMT 343 (520)
T ss_dssp HTTCSEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEeEEE-CCEEEEEEEEecCCC-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999 579999999988865 7999999999999999999999999999998887777766666655555
Q ss_pred ccchhHHHH
Q psy8476 402 IGIQNAQLF 410 (421)
Q Consensus 402 ~~~~~~~~~ 410 (421)
...+..+.+
T Consensus 344 ~~~~~~~~l 352 (520)
T 3zq5_A 344 TAADFVEGL 352 (520)
T ss_dssp HSSSHHHHH
T ss_pred cCcChhHHH
Confidence 544444444
No 41
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.61 E-value=7e-07 Score=87.13 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=53.0
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENAC 384 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~ 384 (421)
.+..++.|.|||+. +|++.|.|.+.+.. .+.++..+..+++.+|.|+|+||+.+..+++.+
T Consensus 275 nm~v~AsLvvpI~~-~~~LWGLl~~Hh~~-pR~w~~~e~~~~e~la~~l~iai~q~e~~~~~~ 335 (337)
T 2ool_A 275 NMGMHAAMSISIVR-DNRLWGMISCHNLT-PRFVSYEVRQACELIAQVLTWQIGVLEEAEIVR 335 (337)
T ss_dssp HHTCCEEEEEEEEE-TTEEEEEEEEEESS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HcCccccEEEEEEE-CCeeEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999 57999999999887 479999999999999999999999988776543
No 42
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.56 E-value=1.5e-06 Score=83.99 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=48.1
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNT 377 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena 377 (421)
.+..++.|.|||+. +|++.|.|.+-+..+ +.++..+..+++.+|.|+|++|+..
T Consensus 262 nmgV~AsLvvpI~~-~~~LWGLl~~Hh~~p-R~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 262 NIGMHGTMSISILR-GERLWGLIACHHRKP-NYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp HTTCCEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcEEEEEEEEE-CCEEEEEEEEecCCC-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999 579999999988755 7999999999999999999999864
No 43
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.56 E-value=1.1e-06 Score=93.38 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCG 401 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~~~~~~~~~~e~~~~~~ 401 (421)
.+..++.|+|||+. ++++.|.|.+-+..+ +.++..+..+++.++.++|++|+++.++++.++....++...++...+.
T Consensus 260 ~~~v~asl~vpi~~-~~~LWGLl~~h~~~p-r~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 337 (635)
T 4eho_A 260 NMGVRATLVVSLVV-GGKLWGLVACHHYLP-RFIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAIT 337 (635)
T ss_dssp HHTCCEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhCcceEEEEEEEE-cceeeeeeeeecCCC-CcCCHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999 579999999988875 6899999999999999999999999999998887777666666655555
Q ss_pred ccchhH
Q psy8476 402 IGIQNA 407 (421)
Q Consensus 402 ~~~~~~ 407 (421)
+..+..
T Consensus 338 ~~~~~~ 343 (635)
T 4eho_A 338 REGDWR 343 (635)
T ss_dssp SSSCSH
T ss_pred ccCchh
Confidence 544433
No 44
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.41 E-value=1.1e-07 Score=83.55 Aligned_cols=151 Identities=32% Similarity=0.460 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccc
Q psy8476 31 MSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCR 110 (421)
Q Consensus 31 ~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (421)
..+++.++++.|+++++.+.++.+|++++++.+++.+.+++++++|+|+++|++++.++.. +.. .+..
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~--~~~-~~~~--------- 71 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSD--LFD-IGEE--------- 71 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEE--EEE-EEEE---------
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEE--Eec-cCcc---------
Confidence 3456778889999999999665569999999999999999999999999999987765310 000 0000
Q ss_pred cCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccC
Q psy8476 111 RESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVC 190 (421)
Q Consensus 111 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~ 190 (421)
+.. ..+ ... .....+| .+.|++|||+++|+|+.++|+..||++.
T Consensus 72 ---------------~~~--~~~---~~~-----~~~~~~~---------~~~~~~~~v~~~~~~~~i~d~~~~~~~~-- 115 (189)
T 2e4s_A 72 ---------------KEG--KPV---FKK-----TKEIRFS---------IEKGIAGQVARTGEVLNIPDAYADPRFN-- 115 (189)
T ss_dssp ---------------ETT--EEE---EEE-----CCCCEEE---------TTSHHHHHHHHHCCCEEESCGGGSTTCC--
T ss_pred ---------------ccc--ccc---ccC-----CcceEee---------CCCcHHHHHHHhCCEEEecCCCcCcccC--
Confidence 000 000 000 0012233 6799999999999999999999998763
Q ss_pred cccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccC-Cc
Q psy8476 191 NDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISE-RK 230 (421)
Q Consensus 191 ~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~-~~ 230 (421)
+..+...++.++|++|+||+.+ |+++|||.+.++.++ .|
T Consensus 116 ~~~~~~~~~~~~s~l~vPl~~~-~~~iGvl~l~~~~~~~~f 155 (189)
T 2e4s_A 116 REVDLYTGYTTRNILCMPIVSR-GSVIGVVQMVNKISGSAF 155 (189)
T ss_dssp THHHHHHCCCCCCEEEEEEEET-TEEEEEEEEEEETTSSSC
T ss_pred hhhccccCCccceEEEEEeccC-CeEEEEEEEEeCCCCCCC
Confidence 2223345688999999999975 699999999999887 55
No 45
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.41 E-value=4.9e-06 Score=80.81 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNT 377 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena 377 (421)
.+..++.|.|||+. +|++.|.|.+-+..+ +.++..+..+++.+|.|+|++|...
T Consensus 280 nmgV~AsLvvpI~~-~~~LWGLL~~Hh~~p-R~w~~~er~~~e~la~~lsiaI~~~ 333 (343)
T 3s7o_A 280 NMGVGSSLSVSVVV-GGQLWGLIACHHQTP-YVLPPDLRTTLESLGRLLSLQVQVK 333 (343)
T ss_dssp HTTCSEEEEEEEEE-TTEEEEEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEEEEE-CCEEEEEEEEEcCCC-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999 579999999988654 7999999999999999999999854
No 46
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=98.29 E-value=7.6e-07 Score=85.13 Aligned_cols=124 Identities=9% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHhcCCCCCCcceeEEEEEcCCC-Cee--eeecCCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccccCCcccccC
Q psy8476 245 ILAHTPEDPSIAFSTVFELGGPG-GEA--LVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEES 321 (421)
Q Consensus 245 IL~~~~~~l~a~~~~i~l~d~~~-~~~--~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~ 321 (421)
+|+-+.+..+...++||.+++++ ..+ ....|.. .....+++++++++.+|+++.+.+...+.. . .
T Consensus 31 lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~~---~~l~~~DpLVr~alet~~l~~v~~~~~~~~-------~--~ 98 (298)
T 4eu0_A 31 VLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGEM---PALDADDLLVRTCLERGELVSVRQELLERG-------E--Q 98 (298)
T ss_dssp HHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESSC---CCCCSCCHHHHHHHHHTSCEECCC-----------------
T ss_pred HHHHHHHhcCeeEEEEEEEECCcccCCceeeecCCC---CCCCCCCHHHHHHHHhCCceeechhhhhcc-------c--c
Confidence 44444445566778999999887 333 2222321 234567999999999999999887532110 0 0
Q ss_pred CCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 322 DFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381 (421)
Q Consensus 322 ~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~ 381 (421)
...+++++|+||+..+|+++||+.|.+... ..|+++.+++|..++.++|.+++|+.+..
T Consensus 99 ~~~sryL~viPLld~~g~i~Gvl~V~~mpF-~a~~~~~LqlL~VL~g~~ad~i~~~~~~~ 157 (298)
T 4eu0_A 99 RAHSAAAVCVPLVDTDGRILALLAVEQMPF-FVFNERTFSLLAILAGHIADLLQSDRRAL 157 (298)
T ss_dssp -----CCEEEEEECTTSCEEEEEEEEECCG-GGCSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred ccccceEEEEEeecCCCcEEEEEEEecCCc-cccCHhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 114589999999966789999999999876 69999999999999999999999998774
No 47
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.15 E-value=2.4e-06 Score=73.25 Aligned_cols=137 Identities=14% Similarity=0.202 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCC
Q psy8476 36 FERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNN 115 (421)
Q Consensus 36 ~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (421)
.+++++|.++++.+ ++..|++++++.+++.+.+.+++++|+|+++|++.+.+... ...|..
T Consensus 4 l~~L~~L~~i~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~----~~~g~~-------------- 64 (171)
T 3trc_A 4 MNMLKILRQITQEV-NAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLM----ATQGLN-------------- 64 (171)
T ss_dssp HHHHHHHHHHHHHH-HHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEE----EEESSC--------------
T ss_pred HHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEE----EecCCC--------------
Confidence 34688999999999 66679999999999999999999999999999988655311 000000
Q ss_pred cchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCccccc
Q psy8476 116 VDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDE 195 (421)
Q Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~ 195 (421)
++ ......+ +.+.|++|+|+++|+|+.++|+..+|++...+.
T Consensus 65 ----------~~----------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--- 106 (171)
T 3trc_A 65 ----------SK----------------QVGKLRL---------KFGEGLIGLVGEREEPINLADAPLHPAYKHRPE--- 106 (171)
T ss_dssp ----------GG----------------GTTTCEE---------ETTCHHHHHHHHHTSCEEESCGGGSTTCCCCGG---
T ss_pred ----------cc----------------ccccEee---------cCCCChhhHHHhcCCeEEeCCCCCCCccccccc---
Confidence 00 0000112 257899999999999999999999988753322
Q ss_pred CCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 196 ESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 196 ~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
......+|++|+||+.+ |+++||+.+.++.++.|
T Consensus 107 ~~~~~~~s~l~vPl~~~-~~~~Gvl~~~~~~~~~f 140 (171)
T 3trc_A 107 LGEEDYHGFLGIPIIEQ-GELLGILVIQQLESHHF 140 (171)
T ss_dssp GCCCCCCEEEEEEEEET-TEEEEEEEEEESSSCCC
T ss_pred CCcccccEEEEEeEEEC-CEEEEEEEEeecCCCCC
Confidence 23467899999999986 69999999999877665
No 48
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=98.14 E-value=1.1e-06 Score=76.77 Aligned_cols=146 Identities=32% Similarity=0.472 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCC
Q psy8476 35 EFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESN 114 (421)
Q Consensus 35 ~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (421)
+.+..+.|+++++.+.++.+|++++++.+++.+.++++||+|+|||+|++++.++.. ... .+ .....
T Consensus 8 ~~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~--~~~-~~-~~~~~--------- 74 (189)
T 2zmf_A 8 QTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSD--LFD-IG-EEKEG--------- 74 (189)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEE--EEC-CS-CEETT---------
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEE--EEe-cc-ccccc---------
Confidence 345567899999987688889999999999999999999999999999998765321 000 00 00000
Q ss_pred CcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccc
Q psy8476 115 NVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDED 194 (421)
Q Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d 194 (421)
. .. ......+++| .+.|++|+|+++|+++.++|+..+|.+. ....
T Consensus 75 --------------------~--~~--~~~~~~~~~~---------~~~~~~~~v~~~~~~~~i~d~~~~~~~~--~~~~ 119 (189)
T 2zmf_A 75 --------------------K--PV--FKKTKEIRFS---------IEKGIAGQVARTGEVLNIPDAYADPRFN--REVD 119 (189)
T ss_dssp --------------------E--EC--CEECCCCEEE---------TTSHHHHHHHHHCCCEEESCGGGSTTCC--THHH
T ss_pred --------------------c--cc--cccccccccC---------CCccHHHHHHHhCCeEEEeccccccccc--ccch
Confidence 0 00 0000112233 6799999999999999999999988753 2223
Q ss_pred cCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCC
Q psy8476 195 EESDFTTRCILCMPIFNGQKTVIGVAQLINKISER 229 (421)
Q Consensus 195 ~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~ 229 (421)
...++.++|++|+||+.+ |+++||+.+.++..++
T Consensus 120 ~~~~~~~~s~l~vPl~~~-~~~~Gvl~l~~~~~~~ 153 (189)
T 2zmf_A 120 LYTGYTTRNILCMPIVSR-GSVIGVVQMVNKISGS 153 (189)
T ss_dssp HHHCCCCCCEEEEEEEET-TEEEEEEEEEEETTSS
T ss_pred hhcccccceEEEeeeccc-CceeeEEEEEEcCCCC
Confidence 345678899999999996 5999999998876543
No 49
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.06 E-value=3.7e-06 Score=71.92 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchh
Q psy8476 40 QILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIE 119 (421)
Q Consensus 40 ~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (421)
++|.++++.+ ++..|++++++.+++.+.+++++++|+|+++|++++.+... .
T Consensus 2 ~~L~~i~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~----~----------------------- 53 (169)
T 3oov_A 2 NAFHQISSRI-QKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFV----A----------------------- 53 (169)
T ss_dssp ----CHHHHH-HHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEE----E-----------------------
T ss_pred chHHHHHHHH-hhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEE----E-----------------------
Confidence 5789999998 66679999999999999999999999999999988765321 0
Q ss_pred hhccCCCCCCCccceeeeecCCCCCC--ccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcc-cccC
Q psy8476 120 DILAHTPEDPSIAFSTVFELGGPGGE--ALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCND-EDEE 196 (421)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~-~d~~ 196 (421)
..| +... ....+|. ..+.|++|+++++|+|+.++|+..+|++...+. .+..
T Consensus 54 ------------------~~g-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~ 107 (169)
T 3oov_A 54 ------------------AVG-TADFNPAGVVLPL-------DQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAI 107 (169)
T ss_dssp ------------------EES-CSSCCCTTCEEES-------SGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGC
T ss_pred ------------------EeC-chhhhhhcccCCc-------ccccchHHHHHhcCCCEEeccccchhhhhhccccHHHH
Confidence 000 0000 0111220 026899999999999999999999887542221 2233
Q ss_pred CCceeeeeEEeeeEeCCCcEEEEEEeeecccCC
Q psy8476 197 SDFTTRCILCMPIFNGQKTVIGVAQLINKISER 229 (421)
Q Consensus 197 ~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~ 229 (421)
..+..+|++|+||+.+ |+++||+.+.++.++.
T Consensus 108 ~~~~~~s~l~vPl~~~-~~~iGvl~~~~~~~~~ 139 (169)
T 3oov_A 108 RALRSKSFVICPIVVK-GEAIGVFAVDNRSSRR 139 (169)
T ss_dssp GGGCCSSEEEEEEEET-TEEEEEEEEECTTSSS
T ss_pred HhcCcCcEEEEEEEeC-CcEEEEEEEEccccCC
Confidence 4578899999999986 6999999999987654
No 50
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=97.84 E-value=1.6e-05 Score=67.47 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCC
Q psy8476 35 EFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESN 114 (421)
Q Consensus 35 ~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (421)
+.++++.|.++++.+ .+..|++++++.+++.+.++++++.|+|+++|++.+.+... ..
T Consensus 5 ~~~~l~~l~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~----~~----------------- 62 (171)
T 3ci6_A 5 SNMQLDTLRRIVQEI-NSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLM----AS----------------- 62 (171)
T ss_dssp CCHHHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEE----EE-----------------
T ss_pred HHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEE----ec-----------------
Confidence 346788999999998 66679999999999999999999999999999987655211 00
Q ss_pred CcchhhhccCCCCCCCccceeeeecCCCCC-CccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCccc
Q psy8476 115 NVDIEDILAHTPEDPSIAFSTVFELGGPGG-EALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDE 193 (421)
Q Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~ 193 (421)
.|.... .....+ +.+.|++|+++++|+|+.++|+..+|.+...+..
T Consensus 63 ------------------------~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 109 (171)
T 3ci6_A 63 ------------------------KGLNPESVGHVSL---------QLSEGLVGLVGQREEIVNLENASKHERFAYLPET 109 (171)
T ss_dssp ------------------------ESSCGGGTTTCEE---------ETTSHHHHHHHHHTSCEEESSGGGSTTC------
T ss_pred ------------------------cCCCcccccceee---------eccCCeehhhhccCceEEecCCCcCcchhccccc
Confidence 000000 000112 2568999999999999999999998876432221
Q ss_pred ccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 194 DEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 194 d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
.....+|++|+||+.+ |+++||+.+.++.+..|
T Consensus 110 ---~~~~~~s~l~vPl~~~-~~~~Gvl~l~~~~~~~f 142 (171)
T 3ci6_A 110 ---GEEIYNSFLGVPVMYR-RKVMGVLVVQNKQPQDF 142 (171)
T ss_dssp ------CCCEEEEEEEEET-TEEEEEEEEEESSCCCC
T ss_pred ---cccccceEEEEeEEEC-CEEEEEEEEecCCCCCC
Confidence 2345789999999975 69999999999866555
No 51
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=97.80 E-value=7.5e-06 Score=72.02 Aligned_cols=139 Identities=16% Similarity=0.148 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCccc
Q psy8476 30 EMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLC 109 (421)
Q Consensus 30 ~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (421)
++.+++.+++++|.++++.+ ++.+|++++++.+++.+.+++++++|+|+++++++.....
T Consensus 20 ~~l~~~~~~~~~L~~is~~l-~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~------------------- 79 (184)
T 3p01_A 20 EELRRANAQMSLLTVLVQVT-QASNSLEAILTPIATAFAESFAVNACILQMLEGQTLSTIQ------------------- 79 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEE-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCceeeee-------------------
Confidence 45566677889999999999 6677999999999999999999999999999654321100
Q ss_pred ccCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCcccccc
Q psy8476 110 RRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEV 189 (421)
Q Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~ 189 (421)
..+..++.. ...+| +.+++|+++++|+|+.++|+..||++..
T Consensus 80 -------------------------~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~i~d~~~~~~~~~ 121 (184)
T 3p01_A 80 -------------------------GFYSQQGTV---NNWLN----------QDPLTNEAIATGQIQVAANIAKDPKLAS 121 (184)
T ss_dssp -------------------------EEEESSSSC---CCCGG----------GCHHHHHHHHHCSCEEESCGGGCHHHHT
T ss_pred -------------------------eeccccCcc---CcccC----------CCcHHHHHHhhCCeEEEeccccCccccc
Confidence 000000000 01122 4789999999999999999999987532
Q ss_pred CcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 190 CNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 190 ~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
.......+++|++||||+.+ |+++|||.+.+..++.|
T Consensus 122 ---~~~~~~~~~~s~l~vPL~~~-~~~~GvL~l~~~~~~~f 158 (184)
T 3p01_A 122 ---ISQYQDNGIQSHVVIPITYR-NEMLGVLSLQWQQPISL 158 (184)
T ss_dssp ---CHHHHHHTCCEEEEEEEEET-TEEEEEEEEEESSCCCC
T ss_pred ---hhHHHHhCccEEEEEEEEEC-CEEEEEEEeCcCCCCCC
Confidence 11112346899999999986 69999999976666555
No 52
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=97.55 E-value=2e-05 Score=68.51 Aligned_cols=134 Identities=9% Similarity=0.086 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcch
Q psy8476 39 NQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDI 118 (421)
Q Consensus 39 ~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (421)
.++|.++++.| ++..|++++++.+++.+.++++++.|+|+++|+ .+.+... ...|.
T Consensus 2 ~~~L~~i~~~l-~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~-~~~l~~~----a~~g~------------------ 57 (181)
T 2qyb_A 2 NAVRLRASEIM-NRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDE-KGVLRVR----SYSGK------------------ 57 (181)
T ss_dssp -------CHHH-HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECT-TSCEEEE----EEEES------------------
T ss_pred chHHHHHHHHH-HhccCHHHHHHHHHHHHHHHhCCcEEEEEEECC-CCCEEEE----EEeCC------------------
Confidence 35789999998 556699999999999999999999999999954 3333210 00000
Q ss_pred hhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCC
Q psy8476 119 EDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESD 198 (421)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~ 198 (421)
++.. . + ..... +.+.|++|+++++|+|+.++|+..+|+..+.+. ...
T Consensus 58 ------~~~~----------~----~-~~~~~---------~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~---~~~ 104 (181)
T 2qyb_A 58 ------GIAG----------I----A-GKDWE---------PEIETYIGEAFLSNRLQFVNDTQYMTKPLTREL---MQK 104 (181)
T ss_dssp ------CTTS----------T----T-CSCBC---------CCTTSHHHHHHHHTSCEEESCGGGCSCHHHHHH---HHH
T ss_pred ------Ccce----------e----c-ccccc---------cCCCCchhhhhhcCCCEEecChhcCCchhhHHH---HHh
Confidence 0000 0 0 00011 136799999999999999999988776221111 112
Q ss_pred ceeeeeEEeeeEeCCCc-EEEEEEeee-cccCCc
Q psy8476 199 FTTRCILCMPIFNGQKT-VIGVAQLIN-KISERK 230 (421)
Q Consensus 199 ~~~~s~l~vPl~~~~~~-vIGVl~l~~-~~~~~~ 230 (421)
.+.+|++|+||+.++ + ++|||.+++ ..++.|
T Consensus 105 ~g~~s~~~vPl~~~~-~~~~GvL~l~~~~~~~~f 137 (181)
T 2qyb_A 105 EGIKSFAHIPISRKG-EPPFGILSVFSRTIVGLF 137 (181)
T ss_dssp TTCCEEEEEEECCTT-SCCCEEEEEEESSCSSCC
T ss_pred cCcceEEEEEEEeCC-CeEEEEEEEecCCCCCCC
Confidence 357899999999875 7 999999999 666555
No 53
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=97.41 E-value=0.00069 Score=56.11 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=67.3
Q ss_pred EEEEEcCCCCeeeeecCCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCC
Q psy8476 259 TVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQK 338 (421)
Q Consensus 259 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g 338 (421)
.+.+.|.+....++-.|...... .+. ......++.+|+++.+.+.... ......+ -...+.+++||+. +|
T Consensus 18 aV~ItD~~~ilA~~G~g~~~~~~-~~i-s~~~~~~i~~~k~~~~~~~~~~---~~~~~~~----~~~~s~ii~PI~~-~g 87 (123)
T 2w1r_A 18 SVLICDRDVYIAVSGSSKKDYLN-KSI-SEMLERTMDQRSSVLESDAKSV---QLVNGID----EDMNSYTVGPIVA-NG 87 (123)
T ss_dssp EEEEECSSBEEEEESSCHHHHBT-CBB-CHHHHHHHHHCSCEEESSCEEE---ESBTTCE----EEESEEEEEEEEE-TT
T ss_pred eEEEEcCccEEEEEecChhhcCC-Ccc-CHHHHHHHHcCCEEEEcCCccc---cccCCCC----CCeeEEEEEEEEE-CC
Confidence 56677776653333222211112 344 5567789999999998664321 1111111 1348999999999 57
Q ss_pred cEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8476 339 TVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGI 374 (421)
Q Consensus 339 ~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAl 374 (421)
+++|+|.++.+.. .|++-+..|.+.+|..++.=+
T Consensus 88 ~viG~i~l~~~~~--~~~~~~~~la~gla~lls~Qm 121 (123)
T 2w1r_A 88 DPIGAVVIFSKDQ--TMGEVEHKAVETAAGFLARQM 121 (123)
T ss_dssp EEEEEEEEEESSS--CCCHHHHHHHHHHHHHHC---
T ss_pred EEEEEEEEEEcCC--CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999995443 599999999999998876533
No 54
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=97.39 E-value=2.2e-05 Score=68.32 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=51.5
Q ss_pred CCcchhhh----hhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 162 LATIAKYV----ASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 162 ~~gi~g~v----~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
..|++|+| +++|+|+.++|++.++.+. ...+....++++|+|||||+.+ |+++|+|.+.+..++.|
T Consensus 77 ~~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~--~~~~~~~~~~~~s~l~vPi~~~-~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 77 EAQSRSISQPESWGLSARVPLGEPLQRPVDP--CHVHYLKSMGVASSLVVPLMHH-QELWGLLVSHHAEPRPY 146 (172)
T ss_dssp GGCCCCCSCCCSCCCSSCCCCCSSSSCCCCH--HHHHHHHTTTCSEEEECCCSCS-SCCCEEEEEEECSCCCC
T ss_pred cccccccccccccccCCceeccchhhcCCCH--HHHHHHHhcCCeEEEEEEEEEC-CEEEEEEEEEeCCCCCC
Confidence 46777776 9999999999998876542 1123334678999999999975 69999999999866555
No 55
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=97.26 E-value=7.4e-05 Score=66.89 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccc
Q psy8476 31 MSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCR 110 (421)
Q Consensus 31 ~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (421)
..+++.+++++|.++++.| ++.+|++++++.+++.+++++++|+|+|+++|++.+.....+ ...++...+.
T Consensus 7 aL~~~~~~~~~L~~i~~~i-~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~--~~~~~~~~~~------ 77 (208)
T 2lb5_A 7 AAAARPSRDALINRITHQI-RQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAE--ARGGERLPSL------ 77 (208)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEE--EESSCCSCCC------
T ss_pred HHHhHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEE--EecCCCCccc------
Confidence 3456677889999999999 677799999999999999999999999999999764321100 0000000000
Q ss_pred cCCCCcchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCc--ccC------CCCCCCcchhh----hhhcCCEEee
Q psy8476 111 RESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNT--VCN------THSRLATIAKY----VASTGQILNI 178 (421)
Q Consensus 111 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~------~~~~~~gi~g~----v~~~g~~~~i 178 (421)
.. ..++.+ .+|... ++. -.....|++|+ |+++|+|+.+
T Consensus 78 ------------------~g----~~~~~~--------~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i 127 (208)
T 2lb5_A 78 ------------------LG----LTFPAG--------DIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPL 127 (208)
T ss_dssp ------------------TT----CEEEGG--------GCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCC
T ss_pred ------------------cC----CcCChh--------hCcHHHHHHHHhCCeEEEeccccccccccccccccccccccc
Confidence 00 000000 000000 000 00123566776 7999999999
Q ss_pred cCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 179 GDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 179 ~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
+|+..++.+. ...+....++++|+|||||+.+ |+++|+|.+.+..+..|
T Consensus 128 ~d~~~~~~~~--~~~~~l~~~~~~S~l~vPi~~~-~~l~GvL~~~~~~~~~~ 176 (208)
T 2lb5_A 128 GEPLQRPVDP--CHVHYLKSMGVASSLVVPLMHH-QELWGLLVSHHAEPRPY 176 (208)
T ss_dssp CSCSSCCCCH--HHHHHHHHTTCSEEEEEEEEET-TEEEEEEEEEESCCCCC
T ss_pred cchhhccCCH--HHHHHHHhcCCcEEEEEEEEEC-CEeEEEEEEeeCCCCCC
Confidence 9998876431 1112234578999999999986 69999999999866555
No 56
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.18 E-value=0.00013 Score=63.92 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=25.4
Q ss_pred cccccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeee
Q psy8476 237 SNNVDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVK 273 (421)
Q Consensus 237 ~~~~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~ 273 (421)
+...|+.+.|.+ +.+.++..+|++|++|++++.++..
T Consensus 27 ~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~ 67 (167)
T 3mmh_A 27 ADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLA 67 (167)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEE
Confidence 344566665544 3445578999999999888776644
No 57
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=96.87 E-value=0.0065 Score=57.89 Aligned_cols=106 Identities=8% Similarity=0.155 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCCcccee
Q psy8476 56 LECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFST 135 (421)
Q Consensus 56 l~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 135 (421)
+..+.+.+++.+.++++-+.|+||.++.+.... -.|..
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~-------~~p~A----------------------------------- 61 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPE-------PQPLA----------------------------------- 61 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBC-------SSCSE-----------------------------------
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccC-------Cceee-----------------------------------
Confidence 566688999999999999999999998865210 00110
Q ss_pred eeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCc
Q psy8476 136 VFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKT 215 (421)
Q Consensus 136 ~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~ 215 (421)
..|.. -.+ ..+.+++++++.+|++..|.+...+... ....+++.+|+||++.+|+
T Consensus 62 --~iG~~-----~~l---------~~~DpLVr~alet~~l~~v~~~~~~~~~---------~~~~sryL~viPLld~~g~ 116 (298)
T 4eu0_A 62 --TLGEM-----PAL---------DADDLLVRTCLERGELVSVRQELLERGE---------QRAHSAAAVCVPLVDTDGR 116 (298)
T ss_dssp --EESSC-----CCC---------CSCCHHHHHHHHHTSCEECCC----------------------CCEEEEEECTTSC
T ss_pred --ecCCC-----CCC---------CCCCHHHHHHHHhCCceeechhhhhccc---------cccccceEEEEEeecCCCc
Confidence 01110 001 2578999999999999999886332110 1124689999999988899
Q ss_pred EEEEEEeeecccC
Q psy8476 216 VIGVAQLINKISE 228 (421)
Q Consensus 216 vIGVl~l~~~~~~ 228 (421)
++||+.+.+...-
T Consensus 117 i~Gvl~V~~mpF~ 129 (298)
T 4eu0_A 117 ILALLAVEQMPFF 129 (298)
T ss_dssp EEEEEEEEECCGG
T ss_pred EEEEEEEecCCcc
Confidence 9999999987543
No 58
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=96.78 E-value=0.0013 Score=56.77 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCC
Q psy8476 27 QLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERK 106 (421)
Q Consensus 27 ~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~ 106 (421)
.+|.+++.+..+++.|+++++.| ++. +++++++.++..+++++++|+|++|++|++ +.+++. +.
T Consensus 2 ~~yr~~e~ra~rLrlL~e~~~~L-~~l-~~~~~l~~il~~a~~~~~~d~gsL~l~d~~-~~l~~~--aa----------- 65 (160)
T 3cit_A 2 NAYRQSQSRAARLRLLVDTGQEL-IQL-PPEAMRKCVLQRACAFVAMDHGLLLEWGAD-NGVQTT--AR----------- 65 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHS-CHHHHHHHHHHHHHHHTTCSEEEEEECC---CCCEEE--EE-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHhccCeeEEEEEcCC-Cceeee--ec-----------
Confidence 35777888999999999999999 654 889999999999999999999999999995 655321 00
Q ss_pred cccccCCCCcchhhhccCCCCCCCccceeeeecCCCCC-CccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCcc
Q psy8476 107 PLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGG-EALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWM 185 (421)
Q Consensus 107 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p 185 (421)
.| +.. -..++++ .+.++.| |
T Consensus 66 --------------------------------~G-~~~~l~~lr~~---------~~~~~~g-----------------p 86 (160)
T 3cit_A 66 --------------------------------HG-SKERLSTLETT---------ADPLAIG-----------------P 86 (160)
T ss_dssp --------------------------------ES-CHHHHTTSCCC---------CCTTCCS-----------------C
T ss_pred --------------------------------cC-chhhhhhhhcc---------ccccccc-----------------c
Confidence 11 000 0012222 2344444 6
Q ss_pred ccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCC
Q psy8476 186 REEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISER 229 (421)
Q Consensus 186 ~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~ 229 (421)
+|. ..++|.++|++||||...+|+++||+++.|+.++.
T Consensus 87 r~~------~~tg~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~ 124 (160)
T 3cit_A 87 QWL------ERPGTHLPCVLLLPLRGADEGSFGTLVLANSVAIS 124 (160)
T ss_dssp EEE------ECTTSSSCEEEEEEEECSSSSEEEEEEEEESSCCC
T ss_pred ccc------cccCcccceeEEEeeecCCCcEEEEEEEeccCCCC
Confidence 653 36799999999999987789999999999999883
No 59
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=96.51 E-value=0.0055 Score=62.73 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
-|+..+.++++.++.+++++|+++++.++.+.+.+..+.+..+...| ....|+.+.+......++++++||++.|+.-+
T Consensus 283 ~w~~~er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 283 LIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRA-RDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 36788999999999999999999999999999999899999999998 55569999999999999999999999988766
Q ss_pred C
Q psy8476 83 S 83 (421)
Q Consensus 83 ~ 83 (421)
.
T Consensus 362 ~ 362 (505)
T 3nhq_A 362 R 362 (505)
T ss_dssp E
T ss_pred e
Confidence 4
No 60
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=96.45 E-value=0.00099 Score=58.37 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.0
Q ss_pred hhhccccc-cHHHHHhc----CCCCCCcceeEEEEEcCCCC
Q psy8476 233 CRRESNNV-DIEDILAH----TPEDPSIAFSTVFELGGPGG 268 (421)
Q Consensus 233 ~~~~~~~~-dl~~IL~~----~~~~l~a~~~~i~l~d~~~~ 268 (421)
++..++++ |++++|.. +.+.+++++++||++|++++
T Consensus 13 s~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~ 53 (180)
T 3dba_A 13 LTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNG 53 (180)
T ss_dssp HTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETT
T ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCC
Confidence 34456677 88876654 55678999999999999764
No 61
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.28 E-value=0.0023 Score=57.34 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=19.6
Q ss_pred cccccHHHHHhcC----CCCC-CcceeEEEEEcCC
Q psy8476 237 SNNVDIEDILAHT----PEDP-SIAFSTVFELGGP 266 (421)
Q Consensus 237 ~~~~dl~~IL~~~----~~~l-~a~~~~i~l~d~~ 266 (421)
....|+.+.|.++ .+.+ ++.++++|++|++
T Consensus 39 ~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~ 73 (195)
T 1vhm_A 39 AGETSFLATLANTSALLYERLTDINWAGFYLLEDD 73 (195)
T ss_dssp TTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT
T ss_pred hcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 4455665555443 3444 7889999999984
No 62
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=96.20 E-value=0.018 Score=59.06 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=69.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
-|+..+.++++.+|.++|++|++++..+..+.+.+..+.+..+...| ....|+.+.+......++++++||.++++.-+
T Consensus 296 ~w~~~er~~~e~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 296 VIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKM-TTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 36788999999999999999999999999998888888888888888 45558999999999999999999999998543
No 63
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.52 E-value=0.0042 Score=54.76 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=13.6
Q ss_pred CcceeEEEEEcCCC-Ceee
Q psy8476 254 SIAFSTVFELGGPG-GEAL 271 (421)
Q Consensus 254 ~a~~~~i~l~d~~~-~~~~ 271 (421)
++.++++|++|+++ +.+.
T Consensus 63 ~~~~~~~yl~d~~~~~~L~ 81 (180)
T 1f5m_A 63 DINWAGFYVTQASEENTLI 81 (180)
T ss_dssp CEEEEEEEEECSSSSCEEE
T ss_pred CccEEEEEEEecCCCCeEE
Confidence 66789999999875 4443
No 64
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=95.48 E-value=0.1 Score=43.34 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=77.1
Q ss_pred hccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCCCCCCC
Q psy8476 51 EEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPS 130 (421)
Q Consensus 51 ~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 130 (421)
+...|.|++.....+.+.++.++....||++|.+..... |+.+ ..-|- -|+++-
T Consensus 9 ~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~--------~~rs--~~~pa-----~~l~~~----------- 62 (162)
T 3eea_A 9 SGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFA--------PARS--TGLPA-----SFLPVF----------- 62 (162)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEE--------EEEE--ESCCG-----GGHHHH-----------
T ss_pred hccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccc--------cccc--cCCch-----hhhHHH-----------
Confidence 455699999999999999999999999999999886531 1111 10000 011110
Q ss_pred ccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeE
Q psy8476 131 IAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIF 210 (421)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~ 210 (421)
-.+| +. |-...+....++.++-+..+|-... ..+.|-... --+--.+++||+.
T Consensus 63 -----------------r~mp---l~---p~k~pllk~~lr~~~hll~~dp~~s--~l~tp~l~k--~~~~~~ILgVPL~ 115 (162)
T 3eea_A 63 -----------------REMP---LA---PDKIPLLKSMLRKRQHLMLTDPGSS--DLLTPKLRK--LLRNLCVLAVPMV 115 (162)
T ss_dssp -----------------HHCC---BC---TTTCHHHHHHHHHTCCEEESCGGGC--TTSCHHHHH--HTTTEEEEEEEEE
T ss_pred -----------------hhCC---CC---CCccHHHHHHHHhcCccccCCCCcc--hhccHHHHH--HHhhCeEEEecce
Confidence 0122 11 1224466777888888887763221 111111111 1233589999999
Q ss_pred eCCCcEEEEEEeeecccC-Cc
Q psy8476 211 NGQKTVIGVAQLINKISE-RK 230 (421)
Q Consensus 211 ~~~~~vIGVl~l~~~~~~-~~ 230 (421)
.++ ++|||+.+.++... .|
T Consensus 116 ~g~-qVIGVLFaArR~~R~~F 135 (162)
T 3eea_A 116 VRT-QVIGAVFMARTRDNPPF 135 (162)
T ss_dssp ETT-EEEEEEEEEEETTSCCC
T ss_pred eCC-EEEEEEEEecccccCCC
Confidence 985 99999999998877 55
No 65
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=95.29 E-value=0.011 Score=51.58 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=81.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcchhhhccCC
Q psy8476 46 ARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHT 125 (421)
Q Consensus 46 ~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (421)
+..| .+++|++++++.+++.+++++++|+|.||.+|++..... +.... .
T Consensus 3 a~~I-r~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~v----vaE~~--------------------------~ 51 (171)
T 4glq_A 3 AVQL-SELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTV----VAESV--------------------------A 51 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEE----EEEEE--------------------------C
T ss_pred HHHH-hhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEE----EEEEc--------------------------C
Confidence 4557 677899999999999999999999999999999753210 00100 0
Q ss_pred CCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeE
Q psy8476 126 PEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCIL 205 (421)
Q Consensus 126 ~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l 205 (421)
|+.+ . -+| ..+|... . ..-....+++|+++.|+|+..++... ........++++|+|
T Consensus 52 ~~~~-----s--~lg-------~~~~~~~------~-~~~~~~~~~~g~~~~I~Dv~~~~~~~--~~~~~l~~~~v~S~L 108 (171)
T 4glq_A 52 EGWP-----Q--ARD-------QVIEDPC------F-REHWVEAYRQGRIQATTDIFKAGLTE--CHLNQLRPLKVRANL 108 (171)
T ss_dssp TTSC-----C--CTT-------CEECCTH------H-HHHTHHHHHTTCCEEESCGGGTTCCH--HHHHHHGGGTEEEEE
T ss_pred CCCc-----c--ccC-------CccCccc------c-HHHHHHHHHcCCEEEEcCcCcCCCCH--HHHHHHHhcCCcEEE
Confidence 0000 0 000 1122100 0 01235678999999999998753211 012233568999999
Q ss_pred EeeeEeCCCcEEEEEEeeec-ccCCc
Q psy8476 206 CMPIFNGQKTVIGVAQLINK-ISERK 230 (421)
Q Consensus 206 ~vPl~~~~~~vIGVl~l~~~-~~~~~ 230 (421)
+|||+.+ |+++|+|.+.+. .+..|
T Consensus 109 ~vPi~~~-~~l~GlL~~~~~~~~r~w 133 (171)
T 4glq_A 109 VVPMVID-DQLFGLLIAHQASEPRQW 133 (171)
T ss_dssp EEEEEET-TEEEEEEEEEEESSCCCC
T ss_pred EEEEEEC-CEEEEEEEEEeCCCCCCC
Confidence 9999996 599999999885 44444
No 66
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=94.53 E-value=0.015 Score=49.34 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=55.8
Q ss_pred hhccccccHHHHHhc----CCCCCCcceeEEEEEcCCCCeeeeecCCCCc---ccccCCCchHHHHHHHhCCEEEEcCCC
Q psy8476 234 RRESNNVDIEDILAH----TPEDPSIAFSTVFELGGPGGEALVKSPGNTV---CNTHSRLATIAKYVASTGQILNIGDVP 306 (421)
Q Consensus 234 ~~~~~~~dl~~IL~~----~~~~l~a~~~~i~l~d~~~~~~~~~~~~~~~---~~~~~~~~gi~g~v~~tg~~v~i~D~~ 306 (421)
+......++++++.. +.+.++++++.|+++|+++..+....+.... ....+.+.|+.|+++++|+|+.++|..
T Consensus 22 ~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 101 (181)
T 3e0y_A 22 MLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISLSRAS 101 (181)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSSHHHHHHHCCCEEEEEEC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCeeeehhhcCCeEEecCcc
Confidence 334556677776554 5567789999999999998855544443321 123466789999999999999999988
Q ss_pred Cccc
Q psy8476 307 SWMR 310 (421)
Q Consensus 307 ~~~~ 310 (421)
.+++
T Consensus 102 ~~~~ 105 (181)
T 3e0y_A 102 QDPR 105 (181)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7654
No 67
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=93.20 E-value=0.071 Score=45.14 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCc
Q psy8476 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNV 116 (421)
Q Consensus 37 ~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (421)
..+++|.++++.| ++.+|++++++.+++.+.+++++++|+|+++|++++.+..+ .. +
T Consensus 3 ~~l~ll~~i~~~l-~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~---~~--~----------------- 59 (177)
T 3k2n_A 3 AALKLMQYIGDAI-GTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVF---FE--M----------------- 59 (177)
T ss_dssp HHHHHHHHHHHHH-TTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEE---EE--E-----------------
T ss_pred HHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeE---Ee--c-----------------
Confidence 4578999999999 67789999999999999999999999999999988765211 00 0
Q ss_pred chhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCC-ccccccC-ccc-
Q psy8476 117 DIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPS-WMREEVC-NDE- 193 (421)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~-~p~~~~~-~~~- 193 (421)
+..+++.......+ +.+.|++|+|+++|+|+.+ |+.. +|.+... +..
T Consensus 60 --------------------~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~ 109 (177)
T 3k2n_A 60 --------------------LRFELPEQLRHQTR---------SIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLL 109 (177)
T ss_dssp --------------------CSSCCCSTTCCSEE---------ECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHH
T ss_pred --------------------ccCCCCchhhcccC---------CccccHHHHHhccCCceEe-chhhcccccCCcchhHH
Confidence 00000000000112 2578999999999999999 7766 5554322 000
Q ss_pred ccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 194 DEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 194 d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
+.....+++|++|+||+.++ +++|||.+.++.++.|
T Consensus 110 ~~~~~~~~~s~l~vPL~~~~-~~iGvL~l~~~~~~~f 145 (177)
T 3k2n_A 110 WTLHELGMRQIVLSPLRSGG-RVIGFLSFVSAEEKLW 145 (177)
T ss_dssp HHHHHHTCCEEEEEEEEETT-EEEEEEEEEESSCCCC
T ss_pred HHHHHcCceEEEEEEEEECC-EEEEEEEEEECCCCCC
Confidence 11234578999999999975 9999999999888766
No 68
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=93.17 E-value=0.064 Score=56.59 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEe
Q psy8476 3 ILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLK 82 (421)
Q Consensus 3 ~~~~~d~~~~~~~a~~~~ial~na~l~~~~~~~~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d 82 (421)
.++..+.++++.++.+++++|+++++.++.+.+....+....+...+ ....|+...+......++++++|+.++++.-+
T Consensus 290 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~ 368 (635)
T 4eho_A 290 FIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAI-TREGDWRAAIFDTSQSILQPLHADGCALVYED 368 (635)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-SSSSCSHHHHSCTTSCSSGGGTCSEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH-hccCchhhHHHhcChHHHhhhcCCeEEEEECC
Confidence 36778899999999999999999999999999888888888888887 55568888888888889999999999988644
No 69
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=92.22 E-value=0.61 Score=38.06 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=39.7
Q ss_pred CcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeeccc
Q psy8476 163 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKIS 227 (421)
Q Consensus 163 ~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~ 227 (421)
...+..|+.+|+++.+.+-.. ..... .......+.+++||+.+ |++||+|.++.+..
T Consensus 44 s~~~~~~i~~~k~~~~~~~~~---~~~~~----~~~~~~~s~ii~PI~~~-g~viG~i~l~~~~~ 100 (123)
T 2w1r_A 44 SEMLERTMDQRSSVLESDAKS---VQLVN----GIDEDMNSYTVGPIVAN-GDPIGAVVIFSKDQ 100 (123)
T ss_dssp CHHHHHHHHHCSCEEESSCEE---EESBT----TCEEEESEEEEEEEEET-TEEEEEEEEEESSS
T ss_pred CHHHHHHHHcCCEEEEcCCcc---ccccC----CCCCCeeEEEEEEEEEC-CEEEEEEEEEEcCC
Confidence 445788999999999966332 11110 11125689999999986 59999999995443
No 70
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=91.44 E-value=1.3 Score=40.81 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
.+.++...+... .|++++++.+.+.+++.++.+.+++.|+++..
T Consensus 104 ~~~~l~l~LL~a-~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~ 147 (252)
T 3e98_A 104 KTRRLVLDLLDA-TSLEDVVSTVEDSLRHEFQVPYVSLILFSDSS 147 (252)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHHHHHHTSCCSEEEEEEECSSC
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 444555566444 59999999999999999999999999998753
No 71
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=89.80 E-value=1.5 Score=37.84 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=42.5
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQ 378 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~ 378 (421)
+-...|||.. .|+-+|.|.+.... .+|+++|+-+++.-|.-+|+-|-+.+
T Consensus 119 ~~~tIvPI~g-~GeRLGTLvl~r~~--~~F~ddDLILaEyaATVVGlEILr~~ 168 (170)
T 2gx5_A 119 GLTTIVPIIG-GGERLGTLILSRLQ--DQFNDDDLILAEYGATVVGMEILREK 168 (170)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEEESS--CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEc-CCeEEEEEEEEecC--CCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 5589999999 57999999997664 47999999999999999998877643
No 72
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=87.86 E-value=3.9 Score=35.51 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=54.9
Q ss_pred chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHH
Q psy8476 287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAF 366 (421)
Q Consensus 287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~l 366 (421)
......++..++++...+...- +.+ . +....| .+....||.. .|.+||.+.+.++... |++.+..+.++.
T Consensus 99 ~~~le~~~~~r~~~~~~~~~~~--~~~-~--~~~~~~--~~~~i~pI~~-~gd~~Gavi~~~~~~~--~~~~e~k~a~~a 168 (178)
T 2w1t_A 99 SEMLERTMDQRSSVLESDAKSV--QLV-N--GIDEDM--NSYTVGPIVA-NGDPIGAVVIFSKDQT--MGEVEHKAVETA 168 (178)
T ss_dssp CHHHHHHHHTCSCEEESSCCCE--ESB-T--TCEECC--SEEEEEEEEE-TTEEEEEEEEEESSSC--CCHHHHHHHHHH
T ss_pred hHHHHHHHHhCcEEEeccCcce--eee-c--CCCcee--eeEEEEEEEe-CCCceEEEEEEecCCC--CCHHHHHHHHHH
Confidence 3455667888888887542221 001 1 111223 5899999999 7899999999988763 999999999999
Q ss_pred HHHHHHH
Q psy8476 367 AIFCGLG 373 (421)
Q Consensus 367 A~q~aiA 373 (421)
|+++|.=
T Consensus 169 a~fL~kq 175 (178)
T 2w1t_A 169 AGFLARQ 175 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988753
No 73
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=83.94 E-value=15 Score=30.01 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEEEeCCCch
Q psy8476 58 CLVTKIMTEARDLLKCERCAVFLLKSETSE 87 (421)
Q Consensus 58 ~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~ 87 (421)
..+...++.+.+..+++ +|++.|.+.-.
T Consensus 41 ~~l~~~~~~~~~~~~~~--~i~v~d~~G~~ 68 (142)
T 3by8_A 41 SGIQAIAEAVRKRNDLL--FIVVTDMQSLR 68 (142)
T ss_dssp CSHHHHHHHHHHHTTCS--EEEEEETTCBB
T ss_pred HHHHHHHHHHHhhcCCc--EEEEECCCCcE
Confidence 45788888899999988 89999997643
No 74
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=78.73 E-value=8.7 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVS 361 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~ 361 (421)
-+.+++||...+|+++|.|.+..... .|+.++..
T Consensus 126 v~~iAaPv~~~~g~~~aalsv~~p~~--r~~~~~~~ 159 (182)
T 2o99_A 126 LRCLAACIFDEHREPFAAISISGPIS--RITDDRVT 159 (182)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEETT--TSCGGGHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEeehH--hCCHHHHH
Confidence 47999999987899999999987754 57765543
No 75
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=77.38 E-value=7.5 Score=33.24 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.6
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDV 360 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~ 360 (421)
-+.+++||...+|+++|+|.+..... .|+.+..
T Consensus 122 ~~~vAaPv~~~~g~~~~alsv~~p~~--r~~~~~~ 154 (181)
T 1ysp_A 122 LRCIAVPVFDRFGVVIAGLSISFPTL--RFSEERL 154 (181)
T ss_dssp BEEEEEEEECTTSCEEEEEEECCBSS--SCCHHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEeehH--hcCHHHH
Confidence 47999999988899999999976643 5777554
No 76
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=77.18 E-value=6.9 Score=33.32 Aligned_cols=33 Identities=3% Similarity=0.129 Sum_probs=27.2
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDV 360 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~ 360 (421)
-+.+++||...+|+++|.|.+..... .|+.+..
T Consensus 121 ~~~iAaPI~~~~g~~~aalsv~~p~~--r~~~~~~ 153 (176)
T 3obf_A 121 EVGVASPVYDHRGNMVASVLIPAPKF--RVSQDTL 153 (176)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGG--GCCHHHH
T ss_pred cEEEEEEEECCCCCEEEEEEeEeehh--hCCHHHH
Confidence 47999999998899999999987754 5787763
No 77
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=76.24 E-value=8.5 Score=33.56 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=27.3
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVS 361 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~ 361 (421)
-+.+++||...+|+++|+|.+..... .|+.+...
T Consensus 142 v~~iAaPI~~~~g~~~aalsvs~p~~--r~~~~~~~ 175 (198)
T 1tf1_A 142 LNCIASAIYDDVGSVVAAISISGPSS--RLTEDRFV 175 (198)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEETT--TSCGGGHH
T ss_pred ceEEEEEEECCCCCEEEEEEEeeehH--hCCHHHHH
Confidence 47999999988899999999987754 57765543
No 78
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=72.54 E-value=3.7 Score=37.82 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=42.0
Q ss_pred ccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8476 324 TTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHN 376 (421)
Q Consensus 324 ~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlen 376 (421)
..+|+.++||.. +..+|+|.+.+..+.+--..-+-.+|+.+|..++.++.+
T Consensus 193 ~v~S~AllpL~~--~~~~GlLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~r 243 (252)
T 3e98_A 193 EIGSAAVVSLSF--QGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPR 243 (252)
T ss_dssp GCCEEEEEEEES--SSEEEEEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGGG
T ss_pred cccceEEEEcCC--CCceEEEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 468999999954 469999999999987544556788999999999888764
No 79
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=70.83 E-value=11 Score=34.22 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=27.3
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVS 361 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~ 361 (421)
-+++++||...+|+++|+|.+..... .|+.+...
T Consensus 197 ~~~iAaPI~~~~g~~~aalsv~~p~~--r~~~~~~~ 230 (249)
T 1mkm_A 197 IMCVGVPIFDHNGYPVAGVSISGVAR--KFTEEKIE 230 (249)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGG--GCCHHHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEhH--hcCHHHHH
Confidence 47999999988899999999987654 57766543
No 80
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=70.37 E-value=39 Score=26.89 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEEEeCCCchh
Q psy8476 58 CLVTKIMTEARDLLKCERCAVFLLKSETSEA 88 (421)
Q Consensus 58 ~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l 88 (421)
..+...++.+.+..+++ +|++.|.+.-.+
T Consensus 35 ~~l~~~~~~~~~~~~~~--~i~v~d~~G~~~ 63 (131)
T 1p0z_A 35 ARIKALIDPMRSFSDAT--YITVGDASGQRL 63 (131)
T ss_dssp HHHHHHHHHHHHHSCCS--EEEEEETTSBEE
T ss_pred HHHHHHHHHHHHhcCCC--EEEEEcCCCcEE
Confidence 45788888999999998 899999976543
No 81
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=70.10 E-value=12 Score=34.34 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=26.7
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCD 359 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d 359 (421)
-+++++||...+|+++|+|.+..... .|+.+.
T Consensus 209 ~~~iAaPI~~~~g~~~aalsvs~p~~--r~~~~~ 240 (265)
T 2ia2_A 209 LRSMAAPIRGASGLTVAAVNISTPAA--RYSLED 240 (265)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGG--GCCHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEhH--hcCHHH
Confidence 57999999988899999999987654 577765
No 82
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=69.35 E-value=12 Score=34.23 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
.+++++... ....++-++...+++.+.+.++ +.+.+.+++.+.
T Consensus 65 ~~~~lg~~~-~~~~~l~~~a~p~l~~L~~~~g-etv~L~v~~g~~ 107 (260)
T 3r4k_A 65 QVLRLAALR-EASVPILSASRRVLRELSEDTG-ETTHLSLLQGEQ 107 (260)
T ss_dssp THHHHHHHH-HHHSCHHHHHHHHHHHHHHHHS-SEEEEEEEETTE
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhC-CeEEEEEEECCE
Confidence 466777765 4445888888888888888887 566777777654
No 83
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=68.57 E-value=14 Score=34.13 Aligned_cols=34 Identities=6% Similarity=-0.097 Sum_probs=27.4
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVS 361 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~ 361 (421)
-+++++||...+|+++|.|.+..... .|+++.+.
T Consensus 218 v~~vAaPV~~~~g~~~aalsvs~p~~--r~~~~~~~ 251 (275)
T 3mq0_A 218 MLCIGAAIRDYSGAASAGIAISLIRS--EASDEKIA 251 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEETT--SCCTTHHH
T ss_pred cEEEEEEEECCCCCEEEEEEEEEEhh--hcCHHHHH
Confidence 57999999998899999999987754 57765543
No 84
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=68.53 E-value=9.6 Score=34.85 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.2
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDV 360 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~ 360 (421)
-+++++||+..+|+++|+|.+..... .|+++..
T Consensus 205 ~~~vAaPI~~~~g~~~aalsvs~p~~--r~~~~~~ 237 (260)
T 2o0y_A 205 SSGLSFPLVDSHGTVVAALTLGGPTG--RFTEDRT 237 (260)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEGG--GSCTTTH
T ss_pred ceEEEEEEECCCCCEEEEEEEEeehH--hCCHHHH
Confidence 57999999988899999999987654 4665543
No 85
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=67.32 E-value=24 Score=31.55 Aligned_cols=131 Identities=8% Similarity=-0.032 Sum_probs=80.3
Q ss_pred cccHHHHHhcCCCCCCcceeEEEEEcCCC---CeeeeecCCCC-cc-----cccCCCchHHHHHHHhCCEEEEcCCCCcc
Q psy8476 239 NVDIEDILAHTPEDPSIAFSTVFELGGPG---GEALVKSPGNT-VC-----NTHSRLATIAKYVASTGQILNIGDVPSWM 309 (421)
Q Consensus 239 ~~dl~~IL~~~~~~l~a~~~~i~l~d~~~---~~~~~~~~~~~-~~-----~~~~~~~gi~g~v~~tg~~v~i~D~~~~~ 309 (421)
..++.+.+..+.+.++.++...+...+.. ....+....+. |. ........+..++..+..|+.-.+.....
T Consensus 18 ~~~l~~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~~p~~W~~~~~~~ 97 (237)
T 3szt_A 18 EEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQE 97 (237)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSCSCEEEETTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCCCCEEeCCCCccc
Confidence 34455566666777888887776665432 22333444432 21 12233466777888888888876543211
Q ss_pred ccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8476 310 REEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIH 375 (421)
Q Consensus 310 ~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAle 375 (421)
...|. +....+..++-+++|+... +..+|++.+..... .|++++...+......++..+.
T Consensus 98 ~~~~~---~~a~~~gl~~G~~~p~~~~-~g~~g~ls~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 157 (237)
T 3szt_A 98 NRFFW---EEALHHGIRHGWSIPVRGK-YGLISMLSLVRSSE--SIAATEILEKESFLLWITSMLQ 157 (237)
T ss_dssp CHHHH---HHHHHTTCCEEEEEEEECG-GGCEEEEEEEESSS--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHcCCCCEEEEEeeCC-CCCeEEEEEecCCC--cCCHHHHHHHHHHHHHHHHHHH
Confidence 11221 2223355689999999985 47889999987653 6899988877666655555443
No 86
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=64.07 E-value=23 Score=32.14 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=26.9
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCD 359 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d 359 (421)
-+++++||...+|+++|.|.+..... .|+.+.
T Consensus 202 ~~~iAaPI~~~~g~~~aalsvs~p~~--r~~~~~ 233 (257)
T 2g7u_A 202 LISLAAPVHDAGGTVVGVVACSTSSA--RNTPAQ 233 (257)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEETT--TCCHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEeehH--hcCHHH
Confidence 57999999988899999999987754 588766
No 87
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=53.56 E-value=10 Score=36.52 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCc-hhhhHHHHHhCCCcccccCCcccccCCCC
Q psy8476 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETS-EASHLERILERPGRVISERKPLCRRESNN 115 (421)
Q Consensus 37 ~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (421)
+..+.+.++...| .+++|++++++.+++++++++++||+.||-++++.. ++ +.+ .
T Consensus 149 ~~~~ll~~i~~rI-r~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeV-----vAE--------s---------- 204 (343)
T 3s7o_A 149 TGPHALRNAMFAL-ESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEV-----IAE--------A---------- 204 (343)
T ss_dssp CHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEE-----EEE--------E----------
T ss_pred HHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEE-----EEE--------E----------
Confidence 3456788899999 677899999999999999999999999999999754 21 111 0
Q ss_pred cchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccC-----
Q psy8476 116 VDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVC----- 190 (421)
Q Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~----- 190 (421)
.. ++ |... +| ..+|... . ---.....+.++...|.|++..|.-...
T Consensus 205 ------~~--~~-----~~s~--LG-------l~~pasd------i-P~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~~~ 255 (343)
T 3s7o_A 205 ------RR--EG-----LHAF--LG-------HRFPASH------I-PAQARALYTRHLLRLTADTRAAAVPLDPVLNPQ 255 (343)
T ss_dssp ------EC--TT-----CCCC--TT-------CEECGGG------S-CHHHHHHHHHSCEEEESCTTCCCEEEESSEETT
T ss_pred ------ec--CC-----cccc--cC-------Ccccccc------C-HHHHHHHHHcCCEEEEeccCCCccccccccccc
Confidence 00 00 0000 00 1222110 0 1123456677888899999887531110
Q ss_pred ----------------cc-cccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 191 ----------------ND-EDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 191 ----------------~~-~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
+. ..+...+.+++.|.|||+.+ |+++|.|.+.+..+..+
T Consensus 256 ~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~-~~LWGLL~~Hh~~pR~w 311 (343)
T 3s7o_A 256 TNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG-GQLWGLIACHHQTPYVL 311 (343)
T ss_dssp TTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET-TEEEEEEEEEESSCCCC
T ss_pred cCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEEC-CEEEEEEEEEcCCCcCC
Confidence 00 11223478899999999997 59999999998655544
No 88
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=52.74 E-value=76 Score=27.09 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred ceeEEEEEcCCCCeeeeecCCCCcccccCCCchHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeee
Q psy8476 256 AFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFN 335 (421)
Q Consensus 256 ~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~ 335 (421)
.+..+++.|.++.......+... ..-.....--..+..+|+ ..+.+.+.++... ...-.+++||..
T Consensus 69 ~~~~i~i~d~~G~~~~~~~~~~~--~~~~~~r~~f~~a~~~~~-~~is~~~~~~~~g-----------~~~i~ia~pi~~ 134 (217)
T 4dah_A 69 RFSGLYFLNAKGDVTASTTELKT--KVNLADRSFFIKAKETKK-TVISDSYSSRITG-----------QPIFTICVPVLD 134 (217)
T ss_dssp TEEEEEEEETTCBEEEESSCCSS--CCBCTTSHHHHHHHHHCS-CEECCCEECTTTC-----------SEEEEEEEEEEC
T ss_pred cccEEEEECCCCcEEEecCCCCC--CCCcchhHHHHHHHhcCC-cEEeceEEcCCCC-----------CEEEEEEEEEEC
Q ss_pred CCCcEEEEEEEE
Q psy8476 336 GQKTVIGVAQLI 347 (421)
Q Consensus 336 ~~g~vIGVl~v~ 347 (421)
.+|+++||+.+.
T Consensus 135 ~~g~~~Gvl~~~ 146 (217)
T 4dah_A 135 SKRNVTDYLVAA 146 (217)
T ss_dssp TTSCEEEEEEEE
T ss_pred CCCCEEEEEEEE
No 89
>1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, protein structure initiative, midwest center for structural genomics; 1.75A {Escherichia coli}
Probab=52.13 E-value=9.7 Score=32.95 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=24.3
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHH
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVTRQPFTDC 358 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~ 358 (421)
-+++++||...+|+++|.|.+..... .|+.+
T Consensus 130 v~~iAaPI~~~~g~~~aalsv~~p~~--r~~~~ 160 (193)
T 1ysq_A 130 VSCIAVPVFDIHGRVPYAVSISLSTS--RLKQV 160 (193)
T ss_dssp EEEEEEEECCTTSCCSEEEEEEEEHH--HHHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEhH--HcCHH
Confidence 47999999987899999999976643 35543
No 90
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=51.60 E-value=10 Score=36.30 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCc
Q psy8476 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNV 116 (421)
Q Consensus 37 ~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (421)
+..+.+.++...| .+++|++++++.+++++++++++||+.||-++++...-. +.+ .
T Consensus 144 ~~~~ll~~i~~~I-r~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~V----vaE--------s----------- 199 (337)
T 2ool_A 144 EFFRSVRVAIRRL-QTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQV----IAE--------D----------- 199 (337)
T ss_dssp HHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEE----EEE--------E-----------
T ss_pred HHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEE----EEE--------E-----------
Confidence 3556788899999 677899999999999999999999999999999764210 111 0
Q ss_pred chhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccC------
Q psy8476 117 DIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVC------ 190 (421)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~------ 190 (421)
.. |+-.+ | +| ..+|... . ---.......++...|.|++..|--...
T Consensus 200 -----~~--~~~~s--~-----lG-------l~~p~~d------i-p~~ar~ly~~~~vr~I~Di~~~~v~~~~~~~~~~ 251 (337)
T 2ool_A 200 -----RD--SGIPS--L-----LD-------FHFPSSD------I-PAQSRALYTINPVRIIPDIGYRPSPLVPDINPRL 251 (337)
T ss_dssp -----EC--TTCCC--C-----TT-------CEECGGG------S-CHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTT
T ss_pred -----cc--CCCcc--c-----cC-------CCCCccc------c-HHHHHHHHHhCCEEEEEccCCCcccccccccccc
Confidence 00 00000 0 00 1222100 0 0123456677888899999886521000
Q ss_pred -cc---------------cccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 191 -ND---------------EDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 191 -~~---------------~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
.. ..+...+++++.|.|||+.+ |+++|.|.+.+..+..+
T Consensus 252 ~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~-~~LWGLl~~Hh~~pR~w 306 (337)
T 2ool_A 252 GGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD-NRLWGMISCHNLTPRFV 306 (337)
T ss_dssp CSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-TEEEEEEEEEESSCCCC
T ss_pred CCCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC-CeeEEEEEEecCCCCCC
Confidence 00 01123468899999999986 59999999998775444
No 91
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=44.33 E-value=42 Score=28.76 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=33.0
Q ss_pred eeeeEEeeeEeCC-CcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCee
Q psy8476 201 TRCILCMPIFNGQ-KTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEA 270 (421)
Q Consensus 201 ~~s~l~vPl~~~~-~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~~ 270 (421)
..-.+++|+.+.+ |+++||+.+.- +++.+...+...--..-+.+|++|.++..+
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i----------------~~~~l~~~~~~~~~~~~g~~~l~d~~G~ii 172 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDV----------------SLAELAELVNEVKLFDAGYVFIVSEDGTTI 172 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEE----------------CHHHHHHHHTCSCCTTSEEEEEEETTSBEE
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEE----------------EHHHHHHHHHhcccCCceEEEEEcCCCcEE
Confidence 3456689999865 89999998853 333333222221112346788999876543
No 92
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=39.09 E-value=27 Score=27.90 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=17.3
Q ss_pred EEEEEeeeCCCcEEEEEEEEec
Q psy8476 328 ILCMPIFNGQKTVIGVAQLINK 349 (421)
Q Consensus 328 ~L~vPI~~~~g~vIGVl~v~~~ 349 (421)
...+||+..+|++|||+.+.-.
T Consensus 103 ~~~~PV~~~~g~viGvv~vg~~ 124 (131)
T 1p0z_A 103 RGKSPIQDATGKVIGIVSVGYT 124 (131)
T ss_dssp EEEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEeEECCCCCEEEEEEEEEE
Confidence 5566999756899999998644
No 93
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=35.38 E-value=31 Score=29.02 Aligned_cols=24 Identities=4% Similarity=0.228 Sum_probs=20.7
Q ss_pred eeeEEeeeEeCCCcEEEEEEeeec
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLINK 225 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~~ 225 (421)
-+.+++||++.+|+++|+|.+.-.
T Consensus 121 ~~~iAaPI~~~~g~~~aalsv~~p 144 (176)
T 3obf_A 121 EVGVASPVYDHRGNMVASVLIPAP 144 (176)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cEEEEEEEECCCCCEEEEEEeEee
Confidence 478999999988999999998643
No 94
>3d3o_A Putative transcriptional regulator, ICIR family; alpha-beta structure, effector domain, structural genomics, protein structure initiative; HET: MSE; 2.46A {Acinetobacter SP}
Probab=35.35 E-value=35 Score=28.81 Aligned_cols=26 Identities=8% Similarity=-0.043 Sum_probs=21.8
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecCC
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKVT 351 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~~ 351 (421)
-+.+++||...+|+++|.|.+.....
T Consensus 123 v~~iAaPv~~~~g~~~~alsv~~p~~ 148 (178)
T 3d3o_A 123 GGTICVLLPMTIQGQPVTMGLGGALD 148 (178)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred ceEEEEEEEcCCCCEEEEEEEEEeHH
Confidence 47999999987789999999976543
No 95
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=35.31 E-value=33 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=16.5
Q ss_pred EEEEEeeeCCCcEEEEEEEEe
Q psy8476 328 ILCMPIFNGQKTVIGVAQLIN 348 (421)
Q Consensus 328 ~L~vPI~~~~g~vIGVl~v~~ 348 (421)
...+||...+|++|||+.+.-
T Consensus 108 ~~~~PV~~~~g~viGvv~vg~ 128 (142)
T 3by8_A 108 RVFTPIYDENHKQIGVVAIGL 128 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEeEEcCCCCEEEEEEEeE
Confidence 455699975689999999853
No 96
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=35.02 E-value=32 Score=29.20 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.7
Q ss_pred eeeEEeeeEeCCCcEEEEEEeeec
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLINK 225 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~~ 225 (421)
-+.+++||++.+|+++|+|.+.-.
T Consensus 126 v~~iAaPv~~~~g~~~aalsv~~p 149 (182)
T 2o99_A 126 LRCLAACIFDEHREPFAAISISGP 149 (182)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEee
Confidence 478999999988999999998753
No 97
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=34.95 E-value=53 Score=29.20 Aligned_cols=60 Identities=12% Similarity=-0.054 Sum_probs=40.4
Q ss_pred CcchhhhhhcCCEEeecCCCCccccccCcccccCCCceeeeeEEeeeEeCCCcEEEEEEeeecc
Q psy8476 163 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKI 226 (421)
Q Consensus 163 ~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~ 226 (421)
..++.++..+..|+.-.+....... ...+....++.++-+++|+...+ ..+|++.+....
T Consensus 75 DPv~~~~~~~~~p~~W~~~~~~~~~---~~~~~a~~~gl~~G~~~p~~~~~-g~~g~ls~~~~~ 134 (237)
T 3szt_A 75 DPIVRHGLLEYTPLIWNGEDFQENR---FFWEEALHHGIRHGWSIPVRGKY-GLISMLSLVRSS 134 (237)
T ss_dssp CHHHHHHHHSCSCEEEETTTCSSCH---HHHHHHHHTTCCEEEEEEEECGG-GCEEEEEEEESS
T ss_pred ChHhhhhcCCCCCEEeCCCCcccHH---HHHHHHHHcCCCCEEEEEeeCCC-CCeEEEEEecCC
Confidence 4467788888899887765432111 11222345788899999999865 778888887654
No 98
>3bjn_A Transcriptional regulator, putative; putative transcriptional regulator ICLR, ST genomics, PSI-2; HET: MSE; 1.65A {Vibrio cholerae o1 biovar eltor str}
Probab=34.56 E-value=29 Score=28.94 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=20.5
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecC
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKV 350 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~ 350 (421)
-+.+++||+ .+|+++|.|.+....
T Consensus 121 ~~~iAaPI~-~~g~~~aalsv~~p~ 144 (165)
T 3bjn_A 121 VSGISAPVM-KGSKLIGAISVMAPA 144 (165)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEEEH
T ss_pred ceEEEEEEc-cCCEEEEEEEEEEEh
Confidence 479999999 789999999997654
No 99
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=34.36 E-value=31 Score=29.21 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred eeeEEeeeEeCCCcEEEEEEeee
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLIN 224 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~ 224 (421)
-+.+++||++.+|+++|+|.+.-
T Consensus 122 ~~~vAaPv~~~~g~~~~alsv~~ 144 (181)
T 1ysp_A 122 LRCIAVPVFDRFGVVIAGLSISF 144 (181)
T ss_dssp BEEEEEEEECTTSCEEEEEEECC
T ss_pred CEEEEEEEECCCCCEEEEEEEEe
Confidence 47899999998899999999864
No 100
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=33.33 E-value=40 Score=32.09 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcch
Q psy8476 39 NQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDI 118 (421)
Q Consensus 39 ~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (421)
.+++.++...| .+++|++++++.+++++++++++||+.||-++++...-. +.+ .
T Consensus 133 ~~ll~~i~~rI-r~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~V----vAE--------s------------- 186 (327)
T 4e04_A 133 FRSVRSAIRRL-QAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEV----IAE--------D------------- 186 (327)
T ss_dssp HHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEE----EEE--------E-------------
T ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEE----EEE--------E-------------
Confidence 46788899999 677799999999999999999999999999999764210 111 0
Q ss_pred hhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccC--------
Q psy8476 119 EDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVC-------- 190 (421)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~-------- 190 (421)
.. |+ |+.. +| ..+|... + ---.....+.|+...|.|++..|--...
T Consensus 187 ---~~--~~-----~~s~--LG-------l~~p~~d----i---p~~ar~ly~~~~vr~I~Di~~~~v~l~~~~~~~~~~ 240 (327)
T 4e04_A 187 ---RC--AE-----VESY--LG-------LHFPASD----I---PAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGR 240 (327)
T ss_dssp ---EC--TT-----SCCC--TT-------CEECGGG----S---CHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTTSS
T ss_pred ---ec--CC-----CcCc--cC-------Ccccccc----c---hHHHHHHHHcCCEEEEeCCCCCccccccccccccCC
Confidence 00 00 0000 00 1222100 0 1123456678888899999876421100
Q ss_pred -------------cc-cccCCCceeeeeEEeeeEeCCCcEEEEEEeeecccCCc
Q psy8476 191 -------------ND-EDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERK 230 (421)
Q Consensus 191 -------------~~-~d~~~~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~ 230 (421)
+. ..+...+++++.|.|||+.+ |+++|.|.+.+..+..+
T Consensus 241 ~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~-~~LWGLl~~Hh~~pR~w 293 (327)
T 4e04_A 241 PIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRG-ERLWGLIACHHRKPNYV 293 (327)
T ss_dssp CCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEEEESSCCCC
T ss_pred cccccccccccCCHHHHHHHHHhCCcEEEEEEEEEC-CEEEEEEEEecCCCcCC
Confidence 00 11223467899999999997 59999999988755544
No 101
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=31.20 E-value=39 Score=29.14 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=20.7
Q ss_pred eeeEEeeeEeCCCcEEEEEEeeec
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLINK 225 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~~ 225 (421)
-+.+++||++.+|+++|+|.+.-.
T Consensus 142 v~~iAaPI~~~~g~~~aalsvs~p 165 (198)
T 1tf1_A 142 LNCIASAIYDDVGSVVAAISISGP 165 (198)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEeee
Confidence 478999999988999999998653
No 102
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=30.49 E-value=9.8 Score=21.83 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=16.0
Q ss_pred CcchhhhhhcCCEEeecC
Q psy8476 163 ATIAKYVASTGQILNIGD 180 (421)
Q Consensus 163 ~gi~g~v~~~g~~~~i~d 180 (421)
-.|+|++..+|+|..++|
T Consensus 5 VvIvGri~l~gkp~v~Pd 22 (26)
T 2o8m_C 5 VVIVGRIVLSGKPAIIPK 22 (26)
T ss_dssp BEEEEEEECSCCCEECCC
T ss_pred EEEEEEEEECCceEEcCC
Confidence 458899999999999988
No 103
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=29.35 E-value=2.8e+02 Score=23.93 Aligned_cols=55 Identities=9% Similarity=-0.074 Sum_probs=34.7
Q ss_pred eeeeEEeeeEeCCCcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCeee
Q psy8476 201 TRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEAL 271 (421)
Q Consensus 201 ~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~~~ 271 (421)
..-.+++|+.+.+|+++||+.+.- +++.+...+...---.-+.++++|.++..+.
T Consensus 126 ~~i~~~~pi~~~~g~~~Gvl~~~i----------------~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~ 180 (254)
T 3lif_A 126 WVFVVSRRLETTDGKFFGVVVATI----------------ESEYFSTFYKTFDLGPGGSISLLHSDGRLLI 180 (254)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEE----------------CHHHHHHHHTTSCCCTTCEEEEEETTSBEEE
T ss_pred EEEEEEeeeeCCCCCEeEEEEEEE----------------CHHHHHHHHHhcCcCCCcEEEEEeCCCcEEE
Confidence 344688999987899999999853 3443333222211123457899998776543
No 104
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=29.12 E-value=1.4e+02 Score=25.01 Aligned_cols=50 Identities=2% Similarity=-0.026 Sum_probs=37.5
Q ss_pred CccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8476 323 FTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGI 374 (421)
Q Consensus 323 ~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAl 374 (421)
+..++=+++|+...++...|++.+..+.. .++..+...|+.+|.++=.++
T Consensus 128 ~Gl~~G~tvp~~~~~~g~~g~ls~a~~~~--~~~~~~~~~l~~la~~~h~~~ 177 (182)
T 3qp1_A 128 NGMGSGITFSAASERNNIGSILSIAGREP--GRNAALVAMLNCLTPHLHQAA 177 (182)
T ss_dssp TTCSSEEEEEEEETTTTEEEEEEEESSTG--GGCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEeecCCCCcEEEEEEecCCc--cCCHHHHHHHHHHHHHHHHHH
Confidence 45578899999996357889999987754 578888888887776654443
No 105
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=28.24 E-value=46 Score=29.91 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
.+++++... ....++-+.....++.+.+.++ +.+.+.+++.+.
T Consensus 66 ~~~~l~~~~-~~~~~l~~~a~p~l~~L~~~~~-etv~L~v~~~~~ 108 (249)
T 1mkm_A 66 KLIEYGSFV-LRRFNIRDIAHDHLVDIMKRTG-ETVHLILKDGFE 108 (249)
T ss_dssp HHHHHHHHH-HHHCCHHHHHHHHHHHHHHTTC-SCEEEEEECSSE
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhC-CeEEEEEEECCE
Confidence 456667665 3445888888889998888886 556677776644
No 106
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=27.93 E-value=46 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.7
Q ss_pred eeeEEeeeEeCCCcEEEEEEeeec
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLINK 225 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~~ 225 (421)
-+.+++||++.+|+++|+|.+.-.
T Consensus 202 ~~~iAaPI~~~~g~~~aalsvs~p 225 (257)
T 2g7u_A 202 LISLAAPVHDAGGTVVGVVACSTS 225 (257)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEee
Confidence 478999999988999999999643
No 107
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=27.81 E-value=46 Score=30.14 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
.+++++... ....++-++...+++.+.+.++ +.+.+.+++.+.
T Consensus 81 ~~~~lg~~~-~~~~~l~~~a~p~l~~L~~~~~-etv~L~v~~~~~ 123 (260)
T 2o0y_A 81 EMLRWVRLA-GRTWAPPEEVVDIMRQLSADTG-ETVNLYIRQGLS 123 (260)
T ss_dssp HHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHT-SEEEEEEEETTE
T ss_pred HHHHHHHHH-HccCCHHHHHHHHHHHHHHhHC-CcEEEEEEECCE
Confidence 466677665 3334778888888888888886 566677777654
No 108
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=27.45 E-value=69 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=19.7
Q ss_pred ceEEEEEeeeCCCcEEEEEEEEecC
Q psy8476 326 RCILCMPIFNGQKTVIGVAQLINKV 350 (421)
Q Consensus 326 ~S~L~vPI~~~~g~vIGVl~v~~~~ 350 (421)
-.+-+.|+...+|++.|++.+....
T Consensus 108 ~~~~~~pi~~~~g~~~g~~~~~~DI 132 (158)
T 3k3c_A 108 FDFVVTPRRRADGSIEGVQLIVDDV 132 (158)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred EEEEEEEeECCCCCEEEEEEEEEeh
Confidence 3566789998889999999886543
No 109
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=27.12 E-value=48 Score=30.09 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 42 LLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 42 L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
+++++... ....++-++...+++.+.+.++ +.+.+.+++.+.
T Consensus 79 ~~~lg~~~-~~~~~l~~~a~p~l~~L~~~~g-etv~L~v~~g~~ 120 (265)
T 2ia2_A 79 VLELGYSY-LSSLSLPEVAQPHLEKLSHKVH-ESSSVSILDGAD 120 (265)
T ss_dssp GGGTTHHH-HTTCCHHHHHHHHHHHHHHHHT-SEEEEEEEETTE
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHHC-CEEEEEEEECCE
Confidence 45566655 4456899999999999999887 566777777644
No 110
>3d3o_A Putative transcriptional regulator, ICIR family; alpha-beta structure, effector domain, structural genomics, protein structure initiative; HET: MSE; 2.46A {Acinetobacter SP}
Probab=26.96 E-value=42 Score=28.31 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=19.9
Q ss_pred eeeEEeeeEeCCCcEEEEEEeee
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLIN 224 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~ 224 (421)
-+.+++||++.+|+++|+|.+.-
T Consensus 123 v~~iAaPv~~~~g~~~~alsv~~ 145 (178)
T 3d3o_A 123 GGTICVLLPMTIQGQPVTMGLGG 145 (178)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEEEcCCCCEEEEEEEEE
Confidence 47899999998899999999864
No 111
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=26.95 E-value=1.1e+02 Score=26.66 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred eEEeeeEeCCCcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCeee
Q psy8476 204 ILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEAL 271 (421)
Q Consensus 204 ~l~vPl~~~~~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~~~ 271 (421)
.+++|+. .+|+++||+.+ ..+++.+-..+.. .-+.+|++|.++..+.
T Consensus 131 ~~~~pi~-~~g~~~Gvv~~----------------~i~l~~l~~~~~~----~~g~~~l~d~~G~ii~ 177 (260)
T 3by9_A 131 YYAYPVI-YAAEILGVIVV----------------KMDLSAIEQGWQN----KSSYFVATDDHQVVFM 177 (260)
T ss_dssp EEEEEEE-ETTEEEEEEEE----------------EECSHHHHHTCCC----SSCEEEEECTTCBEEE
T ss_pred EEEEEEc-cCCeEEEEEEE----------------EEeHHHHHHHHhc----CCCcEEEECCCCeEEE
No 112
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=26.74 E-value=50 Score=29.94 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.8
Q ss_pred eeeEEeeeEeCCCcEEEEEEeeec
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLINK 225 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~~ 225 (421)
-+.+++||++.+|+++|+|.+.-.
T Consensus 196 ~~~iAaPI~~~~g~~~aalsvs~p 219 (260)
T 3r4k_A 196 VHSHAVPIFGPDRAVLGALAVAAP 219 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEEEe
Confidence 478999999988999999998643
No 113
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=26.13 E-value=55 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEEEeeeC---------CCcEEEEEEEEecCC
Q psy8476 328 ILCMPIFNG---------QKTVIGVAQLINKVT 351 (421)
Q Consensus 328 ~L~vPI~~~---------~g~vIGVl~v~~~~~ 351 (421)
-+..||++. +++|+|+|.+.-...
T Consensus 94 ~~~~Pi~n~~~C~~CH~~~~~vLG~l~v~~sl~ 126 (134)
T 3b47_A 94 SFIVPLANEVRCQSCHEQGARFNGAMLLTTSLE 126 (134)
T ss_dssp EEEEEEECCTTGGGTSCTTCSEEEEEEEEEECS
T ss_pred EEEEeccCCCCchhhhCCCCeEEEEEEEEEchH
Confidence 578899987 689999999976654
No 114
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=25.81 E-value=53 Score=30.11 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 41 ILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 41 ~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
.+++++... ....++-++...+++.+.+.++ +.+.+.+++...
T Consensus 88 ~~~~lg~~~-~~~~~l~~~a~p~l~~L~~~~~-etv~L~v~~g~~ 130 (275)
T 3mq0_A 88 HSLRWANGF-LSHLDIVSTFNDHLAQRHDLDP-YTVTLTVREGGE 130 (275)
T ss_dssp HHHHHHHHH-HHTCCHHHHHHHHHHTCGGGTT-SEEEEEEEETTE
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHC-CEEEEEEEECCE
Confidence 577787776 4456888888888888888876 456677777644
No 115
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=25.33 E-value=64 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.2
Q ss_pred eEEeeeEeC---------CCcEEEEEEeeeccc
Q psy8476 204 ILCMPIFNG---------QKTVIGVAQLINKIS 227 (421)
Q Consensus 204 ~l~vPl~~~---------~~~vIGVl~l~~~~~ 227 (421)
-+..||+++ +++|+|||.+.-...
T Consensus 94 ~~~~Pi~n~~~C~~CH~~~~~vLG~l~v~~sl~ 126 (134)
T 3b47_A 94 SFIVPLANEVRCQSCHEQGARFNGAMLLTTSLE 126 (134)
T ss_dssp EEEEEEECCTTGGGTSCTTCSEEEEEEEEEECS
T ss_pred EEEEeccCCCCchhhhCCCCeEEEEEEEEEchH
Confidence 367899988 889999999975543
No 116
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=24.59 E-value=83 Score=28.18 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=32.8
Q ss_pred eeeeEEeeeEeCCCcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCe
Q psy8476 201 TRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGE 269 (421)
Q Consensus 201 ~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~ 269 (421)
..-.+++|+.. +|+++||+.+.-.. ..+.+++.... -..-+.+|++|.++..
T Consensus 149 ~~i~~~~pi~~-~g~~~Gvl~~~i~l-------------~~l~~~~~~~~---~~~~g~~~l~d~~G~i 200 (291)
T 3li9_A 149 FMVSYDSPIFK-NGEFAGIAGVDVPL-------------EYVDDVASSIR---TFDTGYAFMVSNTGIF 200 (291)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEC-------------HHHHHHHTTCC---BTTTBEEEEECTTCBB
T ss_pred EEEEEEEEEEE-CCEEEEEEEEEeeH-------------HHHHHHHHhCC---cCCCeEEEEEeCCCeE
Confidence 45678899996 68999999985321 12344444331 1224578889987654
No 117
>3bjn_A Transcriptional regulator, putative; putative transcriptional regulator ICLR, ST genomics, PSI-2; HET: MSE; 1.65A {Vibrio cholerae o1 biovar eltor str}
Probab=23.02 E-value=61 Score=26.83 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCC
Q psy8476 53 QSNLECLVTKIMTEARDLLKCERCAVFLLKSET 85 (421)
Q Consensus 53 ~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~ 85 (421)
..++-++...+++.+.+.++ +.+.+.+++.+.
T Consensus 8 ~~~l~~~a~p~l~~L~~~~~-etv~L~v~~g~~ 39 (165)
T 3bjn_A 8 SQHNLDAVEAVLSRLQKQTG-EMAAYMVPVGYR 39 (165)
T ss_dssp TSTTHHHHHHHHHHHHHHHS-SEEEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEEECCE
Confidence 44778888888888888887 556677776644
No 118
>1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, protein structure initiative, midwest center for structural genomics; 1.75A {Escherichia coli}
Probab=22.75 E-value=40 Score=28.85 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred eeeEEeeeEeCCCcEEEEEEeee
Q psy8476 202 RCILCMPIFNGQKTVIGVAQLIN 224 (421)
Q Consensus 202 ~s~l~vPl~~~~~~vIGVl~l~~ 224 (421)
-+.+++||++.+|+++|+|.+.-
T Consensus 130 v~~iAaPI~~~~g~~~aalsv~~ 152 (193)
T 1ysq_A 130 VSCIAVPVFDIHGRVPYAVSISL 152 (193)
T ss_dssp EEEEEEEECCTTSCCSEEEEEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEE
Confidence 47899999998899999999864
No 119
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.63 E-value=1.1e+02 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8476 378 QMYENACKLMAKQKVFQRYLT 398 (421)
Q Consensus 378 ~L~~e~~~~~~~~~~~~e~~~ 398 (421)
.||.+++.+.++.+-+...++
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 589999988888877766543
No 120
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=22.52 E-value=1.3e+02 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.6
Q ss_pred eeeeEEeeeEeCCCcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCee
Q psy8476 201 TRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEA 270 (421)
Q Consensus 201 ~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~~ 270 (421)
..-.+++|+.+ +|+++||+.+.-... .+.+++. + .-+.+|++|.++..+
T Consensus 145 ~~i~~~~pi~~-~g~~~Gv~~~~i~l~-------------~l~~~~~-~------~~g~~~l~d~~G~ii 193 (274)
T 3lic_A 145 LMITYAVPFGV-QPDYFGVTTVDLALD-------------RLPEQLG-I------APSRLVVLDDQGRLI 193 (274)
T ss_dssp EEEEEEEEESC-TTCCCEEEEEEEEGG-------------GHHHHHT-S------CGGGEEEECTTSCEE
T ss_pred EEEEEEEEEcc-CCEEEEEEEEEEEHH-------------HHHHHhc-c------CCceEEEECCCCCEE
Confidence 45667999998 789999999853322 3445554 3 445688899887643
No 121
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=20.15 E-value=2.5e+02 Score=25.86 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred eEEeeeEeCCCcEEEEEEeeecccCCcchhhhccccccHHHHHhcCCCCCCcceeEEEEEcCCCCeeeeecCCCCccccc
Q psy8476 204 ILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTH 283 (421)
Q Consensus 204 ~l~vPl~~~~~~vIGVl~l~~~~~~~~~~~~~~~~~~dl~~IL~~~~~~l~a~~~~i~l~d~~~~~~~~~~~~~~~~~~~ 283 (421)
.+++|+.++ |+++||+.+.-... .+.+.+.. .-+.+|++|.++..+..-.+.-......
T Consensus 172 ~~a~PV~~~-G~viGVv~v~i~l~-------------~l~~~~~~-------~~g~~~l~D~~G~ii~~~~~~~~~~~l~ 230 (305)
T 3e4o_A 172 YISRRVDGP-GGPLGVIVAKLEFD-------------GVEADWQA-------SGKPAYVTDRRGIVLITSLPSWRFMTTK 230 (305)
T ss_dssp EEEEEEEET-TEEEEEEEEEECCH-------------HHHHHHHH-------HTSCEEEECTTCBEEEESSGGGTTCBSS
T ss_pred EEEEEEccC-CeEEEEEEEEEcHH-------------HHHHHHhc-------CCceEEEEcCCCeEEEeCChhhccccCC
Q ss_pred CCCchHHHHHHHhCC
Q psy8476 284 SRLATIAKYVASTGQ 298 (421)
Q Consensus 284 ~~~~gi~g~v~~tg~ 298 (421)
++.......+..+++
T Consensus 231 ~l~~~~~~~i~~~~q 245 (305)
T 3e4o_A 231 PIAEDRLAPIRESLQ 245 (305)
T ss_dssp CCCHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhhc
Done!