RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8476
(421 letters)
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide
phosphodiesterase 2A, GAF A and GAF B domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 50.1 bits (118), Expect = 4e-08
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
IA +VA+TGQILNI D + D+ + F TR ILC PI N + VIGVA+L+N
Sbjct: 57 IAGHVATTGQILNIPDAYAHPLF--YRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVN 114
Query: 349 KVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
K+ F+ D + AF+I+CG+ I ++ +Y+
Sbjct: 115 KINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 147
Score = 35.8 bits (81), Expect = 0.003
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 55 NLECLVTKIMTEARDLLKCERCAVFLLKSET 85
++ L+ +I+TEAR+L E C+VFLL
Sbjct: 1 DVSVLLQEIITEARNLSNAEICSVFLLDQNE 31
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 49.7 bits (118), Expect = 9e-08
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 276 GNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFN 335
G C + AST + + DV + C+ T+ + +PI +
Sbjct: 84 GKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACD-------GETKSEIVVPIIS 136
Query: 336 GQKTVIGVAQLINKVTRQPFTDCDVSIFEAFA 367
+GV + F D E A
Sbjct: 137 NDGKTLGVIDIDCLDYE-GFDHVDKEFLEKLA 167
Score = 37.8 bits (87), Expect = 8e-04
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 152 GNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFN 211
G C + AST + + DV + C+ T+ + +PI +
Sbjct: 84 GKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACD-------GETKSEIVVPIIS 136
Query: 212 GQKTVIGVAQLINKISER 229
+GV + E
Sbjct: 137 NDGKTLGVIDIDCLDYEG 154
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide
phosphodiesterase 2A, GAF A and GAF B domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 187
Score = 45.4 bits (106), Expect = 3e-06
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 290 AKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLIN 348
V Q + + D+ S + +LC+P+ + V+ +A N
Sbjct: 75 LGQVVEDKQCIQLKDLTSDD----VQQLQNMLGCELQAMLCVPVISRATDQVVALACAFN 130
Query: 349 KVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVF 393
K+ FTD D + + + G + +T ++ KL + +
Sbjct: 131 KLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQAL 175
Score = 41.1 bits (95), Expect = 7e-05
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 10 QVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEE 52
V Q + G + + F+ Q LL++A+++F
Sbjct: 143 HVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTH 185
Score = 40.0 bits (92), Expect = 2e-04
Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSE 87
+ ++ +L+L +F+ + L K++ + + C + L+ + +
Sbjct: 3 DHDRKILQLCGELFD--LDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQ 51
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 45.1 bits (106), Expect = 3e-06
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 290 AKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINK 349
+ Q+ I DV + C+ + +P+ + +IGV + +
Sbjct: 75 CGTAVARNQVQRIEDVHVFDGHIACDAAS-------NSEIVLPLVVKNQ-IIGVLDIDST 126
Query: 350 VTRQPFTDCDVSIFEAFAIFCGLGIHNTQMY 380
V FTD D + T
Sbjct: 127 VFG-RFTDEDEQGLRQLVAQLEKVLATTDYK 156
Score = 30.9 bits (69), Expect = 0.17
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 166 AKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINK 225
+ Q+ I DV + C+ + +P+ + +IGV + +
Sbjct: 75 CGTAVARNQVQRIEDVHVFDGHIACDAAS-------NSEIVLPLVVKNQ-IIGVLDIDST 126
Query: 226 ISER 229
+ R
Sbjct: 127 VFGR 130
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 192
Score = 28.8 bits (64), Expect = 0.78
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETS 86
+I+ ++ ++ L++ + E R + +R + + + S
Sbjct: 9 NAQRIIAQVQLH-----NDTASLLSNVTDELRRMTGYDRVMAYRFRHDDS 53
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 330
Score = 28.9 bits (65), Expect = 1.0
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 22/109 (20%)
Query: 165 IAKYVASTGQIL-NIGDVPSW------MREEVCNDEDEESDFTTRCILCMPI--FNGQKT 215
++K + + +IL + + +E+ N S + + + + F G+K
Sbjct: 34 VSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYN-----SGLLSTLVADLQLIDFEGKKD 88
Query: 216 VIGVAQLIN-----KISERKPLCRRESNNVDIEDILAHTPEDPSIAFST 259
V AQ+ N +I R P +I +L E P IA +
Sbjct: 89 V---AQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNC 134
>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 225
Score = 28.3 bits (63), Expect = 1.5
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 QLFEMSILEFERNQILLKLAR-SIFEEQSNLECLVTKIMTEARDLLKCERCAVF 79
QL ++ L ++L+K+AR SI + L+ + ++ D + ++ F
Sbjct: 3 QLVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAF 56
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 27.9 bits (61), Expect = 1.8
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 60 VTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERK 106
I+ E ++ L + LL+ ET + + G + ++
Sbjct: 157 AKAIVEEYKEPL--KAVVKKLLEKETITCEEFVEVFKLYGIELKDKC 201
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 27.1 bits (60), Expect = 1.9
Identities = 5/57 (8%), Positives = 9/57 (15%), Gaps = 6/57 (10%)
Query: 69 DLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHT 125
+ + S L + D E + T
Sbjct: 41 GVWRLGEYLDPGPPSAFGGFEDL------GRHIALYYGSFLEVAGEGFDWEAEVWET 91
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 194
Score = 27.7 bits (61), Expect = 2.4
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 35 EFER--NQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETS 86
EF R + +L + +L +E R + +R V+ ++ S
Sbjct: 5 EFFRSVRVAIRRLQTAA-----DLPTACWIAASEVRRITGFDRIKVYQFAADWS 53
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 196
Score = 27.3 bits (60), Expect = 2.5
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 39 NQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETS 86
N L +L + NL I+ E R + +R ++
Sbjct: 11 NAALNRLRQQA-----NLRDFYDVIVEEVRRMTGFDRVMLYRFDENNH 53
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 26.6 bits (57), Expect = 7.0
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 37 ERNQILLKLARSIFEEQSNLECLVTKIMTEARD 69
E+N+ + K+A + E + + + +AR+
Sbjct: 24 EKNKAIKKIAEKLDERRKEILEANRIDVEKARE 56
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus
sp. [TaxId: 1131]}
Length = 170
Score = 25.9 bits (56), Expect = 7.5
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 56 LECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRES 113
L+ ++ + E R L +R V+ E G V++E + R S
Sbjct: 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGH------------GTVVAEARGGERLPS 46
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 25.8 bits (56), Expect = 7.6
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 60 VTKIMTEARDLLKCERCAVFLLKSETSEASHLERIL 95
+I+ + R L + LL+ ET E L RIL
Sbjct: 158 AKEIIRKYRKQL--DNIVEILLEKETIEGDELRRIL 191
>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 315
Score = 26.0 bits (57), Expect = 9.0
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 203 CILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAF 257
L P + Q G + L I + + + +I T EDP+ AF
Sbjct: 214 QFLIFPPY--QNKGHG-SCLYEAIIQ---SWLEDKSITEI------TVEDPNEAF 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,536,244
Number of extensions: 71374
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 27
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)