BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8479
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 144/180 (80%), Gaps = 15/180 (8%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------------- 160
ETGLGKSTLMD+LFNT FE P+ H+ P V+L+++TY+LQE+NV+LK
Sbjct: 50 ETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109
Query: 161 --EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVC 218
EDS+K IV++ID QFEAYLQEELKI+R L+TYHD+RIHVCLYFI PTGH LKSLDLV
Sbjct: 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVT 169
Query: 219 MKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSDVNAAM 278
MKKLDSKVNIIPIIAKAD ISKSEL KFK I +EL SNGV IY+FPTDDE+++++N M
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTM 229
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
++ENE HCDFVKLREMLIR NMED+RE+TH RHYELYR+ +LEE
Sbjct: 262 QVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEE 305
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 39/51 (76%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLPS 649
P LKSLDLV MKKLDSKVNIIPIIAKAD ISKSEL KFK+ T L S
Sbjct: 157 PTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS 207
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 28/179 (15%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKE------------ 161
E+GLGKSTL++SLF T S P PS ++K T +++++ V +KE
Sbjct: 39 ESGLGKSTLINSLFLTDLYSPEYPG--PSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDT 95
Query: 162 ----------DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGL 211
+ ++ ++DYID++FE YL E ++ R DNR+ CLYFI P+GHGL
Sbjct: 96 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRR--QMPDNRVQCCLYFIAPSGHGL 153
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP-TDDE 269
K LD+ MK+L KVNIIP+IAKADT++ E Q+FK IM E+ + + IYEFP TDDE
Sbjct: 154 KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE 212
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRL 441
E+EN HCDF LR MLIRT+M+D+++ T+ HYE YR ++L
Sbjct: 254 EVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKL 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 583 RIPTTRLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
++P R++C P LK LD+ MK+L KVNIIP+IAKADT++ E Q+FK
Sbjct: 133 QMPDNRVQCCL-YFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK 189
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 28/179 (15%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKE------------ 161
E+GLGKSTL++SLF T S P PS ++K T +++++ V +KE
Sbjct: 16 ESGLGKSTLINSLFLTDLYSPEYPG--PSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDT 72
Query: 162 ----------DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGL 211
+ ++ ++DYID++FE YL E ++ R DNR+ CLYFI P+GHGL
Sbjct: 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNR--RQMPDNRVQCCLYFIAPSGHGL 130
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP-TDDE 269
K LD+ MK+L KVNIIP+IAKADT++ E Q+FK IM E+ + + IYEFP TDDE
Sbjct: 131 KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE 189
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRL 441
E+EN HCDF LR MLIRT+M+D+++ T+ HYE YR ++L
Sbjct: 231 EVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKL 272
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 583 RIPTTRLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
++P R++C P LK LD+ MK+L KVNIIP+IAKADT++ E Q+FK
Sbjct: 110 QMPDNRVQCCLYFI-APSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK 166
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 28/179 (15%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKE------------ 161
E+GLGKSTL++SLF T S P PS ++K T +++++ V +KE
Sbjct: 11 ESGLGKSTLINSLFLTDLYSPEYPG--PSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDT 67
Query: 162 ----------DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGL 211
+ ++ ++DYID++FE YL E ++ R DNR+ CLYFI P+GHGL
Sbjct: 68 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNR--RQMPDNRVQCCLYFIAPSGHGL 125
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP-TDDE 269
K LD+ MK+L KVNIIP+IAKADT++ E Q+FK IM E+ + + IYEFP TDDE
Sbjct: 126 KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE 184
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRL 441
E+EN HCDF LR MLIRT+M+D+++ T+ HYE YR ++L
Sbjct: 226 EVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKL 267
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 583 RIPTTRLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
++P R++C P LK LD+ MK+L KVNIIP+IAKADT++ E Q+FK
Sbjct: 105 QMPDNRVQCCLYFI-APSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK 161
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 27/182 (14%)
Query: 114 ETGLGKSTLMDSLFNTS-FESTPSPHSLP----SVKLKAHTYELQENNVKLK-------- 160
E+GLGKSTL++SLF T + P + +V+++A T E++E VKL+
Sbjct: 45 ESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYH--DNRIHVCLYFICPTGHGL 211
D FK+I+ YID QFE YL +E LN H DNR+H C YFI P GHGL
Sbjct: 105 YGDAINCRDCFKTIISYIDEQFERYLHDE----SGLNRRHIIDNRVHCCFYFISPFGHGL 160
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETM 271
K LD+ MK + +KVNI+P+IAKADT++ E ++ K I+ E+ + + IY P D E+
Sbjct: 161 KPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP-DAESD 219
Query: 272 SD 273
D
Sbjct: 220 ED 221
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
P LK LD+ MK + +KVNI+P+IAKADT++ E ++ K
Sbjct: 155 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLK 196
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
E+EN H DF+KLR MLI T+M+D++E T HYE +R +RL+
Sbjct: 264 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLK 305
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 26/174 (14%)
Query: 114 ETGLGKSTLMDSLFNTS-FESTPSPHSLP----SVKLKAHTYELQENNVKLK-------- 160
E+GLGKSTL++SLF T + P + +V+++A T E++E VKL+
Sbjct: 13 ESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 72
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYH--DNRIHVCLYFICPTGHGL 211
D FK+I+ YID QFE YL +E LN H DNR+H C YFI P GHGL
Sbjct: 73 YGDAINCRDCFKTIISYIDEQFERYLHDE----SGLNRRHIIDNRVHCCFYFISPFGHGL 128
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265
K LD+ MK + +KVNI+P+IAKADT++ E ++ K I+ E+ + + IY P
Sbjct: 129 KPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHSIKIYHLP 182
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
P LK LD+ MK + +KVNI+P+IAKADT++ E ++ K
Sbjct: 123 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLK 164
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
E+EN H DF+KLR MLI T+M+D++E T HYE +R +RL+
Sbjct: 232 EVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLK 273
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 104/182 (57%), Gaps = 27/182 (14%)
Query: 114 ETGLGKSTLMDSLFNTSFE-----STPSPHSLPSVKLKAHTYELQENNVKLK-------- 160
E+GLGKSTL++SLF T S + +V+++A T E++E VKL+
Sbjct: 26 ESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 85
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYH--DNRIHVCLYFICPTGHGL 211
D FK+I+ YID QFE YL +E LN H DNR+H C YFI P GHGL
Sbjct: 86 YGDAINCRDCFKTIISYIDEQFERYLHDE----SGLNRRHIIDNRVHCCFYFISPFGHGL 141
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETM 271
K LD+ K + +KVNI+P+IAKADT++ E ++ K I+ E+ + + IY P D E+
Sbjct: 142 KPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP-DAESD 200
Query: 272 SD 273
D
Sbjct: 201 ED 202
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
P LK LD+ K + +KVNI+P+IAKADT++ E ++ K
Sbjct: 136 PFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLK 177
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
E+EN H DF+KLR LI T+ +D++E T HYE +R +RL+
Sbjct: 245 EVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERLK 286
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 27/182 (14%)
Query: 114 ETGLGKSTLMDSLFNTS-FESTPSPHSLP----SVKLKAHTYELQENNVKLK-------- 160
E+GLGKSTL++SLF T + P + +V+++A T E++E VKL+
Sbjct: 45 ESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYH--DNRIHVCLYFICPTGHGL 211
D FK+I+ YID QFE YL +E LN H DNR+H C YFI P GHGL
Sbjct: 105 YGDAINCRDCFKTIISYIDEQFERYLHDE----SGLNRRHIIDNRVHCCFYFISPFGHGL 160
Query: 212 KSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETM 271
K LD+ K + +KVNI+P+IAKADT++ E ++ K I+ E+ + + IY P D E+
Sbjct: 161 KPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP-DAESD 219
Query: 272 SD 273
D
Sbjct: 220 ED 221
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
P LK LD+ K + +KVNI+P+IAKADT++ E ++ K
Sbjct: 155 PFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLK 196
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
E+EN H DF+KLR LI T+ +D++E T HYE +R +RL+
Sbjct: 264 EVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERLK 305
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPS----PHSLP-SVKLKAHTYELQENNVKLK-------- 160
++GLGKSTL+++LF + S +P +V++KA + ++E VK+K
Sbjct: 10 QSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPG 69
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKS 213
E+ ++ I YI+ Q+E +L+EE+ I R D R+H CLYFI PTGH L+
Sbjct: 70 FGDQINNENCWEPIEKYINEQYEKFLKEEVNIARK-KRIPDTRVHCCLYFISPTGHSLRP 128
Query: 214 LDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSD 273
LDL MK L VNIIP+IAKADT++ E +FK + EL NG+ Y DE + D
Sbjct: 129 LDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLED 188
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRL 441
E+EN HC+F LR+ +IRT+++D++E TH HYE YR KRL
Sbjct: 229 EVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 583 RIPTTRLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
RIP TR+ C P L+ LDL MK L VNIIP+IAKADT++ E +FK
Sbjct: 106 RIPDTRVHCCLYFIS-PTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFK 162
>pdb|4G0R|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
Of Infectious Virions To Replication Defective Particles
pdb|4GBT|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
Of Infectious Virions To Replication Defective Particles
Length = 735
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 187 RSLNTYHDNRIHVCLYFIC---PTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSEL 243
+ L+ H R+HV F+C P G L + D + I T +
Sbjct: 619 KELDLEHKPRLHVTAPFVCKNNPPGQLFVRLGPNLTDQFDPNSTTVSRIVTYSTFYWKGI 678
Query: 244 QKFKTNIMTELTSNGVHIYEFPTDDETMSDVNAAMTIFSSIPCDRSLIHT 293
KFK + LT N V Y+ TD S N+ M + +P +H+
Sbjct: 679 LKFKAKLRPNLTWNPV--YQATTD----SVANSYMNVKKWLPSATGNMHS 722
>pdb|3CTA|A Chain A, Crystal Structure Of Riboflavin Kinase From Thermoplasma
Acidophilum
Length = 230
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 221 KLDSKVNIIPIIA----KADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSDVNA 276
+ K+ IIP + K D S EL+K + G+HI F T+D T V A
Sbjct: 120 QFQEKLGIIPYLGTLNIKVDQASLPELRKIRG-------FRGIHIEGFKTEDRTFGSVKA 172
Query: 277 AMTIFSSIPC 286
+IPC
Sbjct: 173 FPAKIQNIPC 182
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 123 MDSLFNTSFESTPSPHSLPSVKLKA--HTYELQENNVKLKEDSFKSIVDYID 172
+D + + ++ +PH +P + + A H Y LQ NVKL D FK+I + I+
Sbjct: 147 LDVVTTANQDTISAPHLVPIIAIDAWEHAYYLQYQNVKL--DYFKAIWNVIN 196
>pdb|3AHY|A Chain A, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|B Chain B, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|C Chain C, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|D Chain D, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
Length = 473
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 451 NFRWSDFSAKTRFGWDYLPYINTGKRLPK 479
NF W+D TRFG Y+ Y N KR PK
Sbjct: 429 NFEWAD-GYVTRFGVTYVDYENGQKRFPK 456
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,894,204
Number of Sequences: 62578
Number of extensions: 737630
Number of successful extensions: 1732
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 36
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)