Query psy8479
Match_columns 650
No_of_seqs 548 out of 2346
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:53:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1547|consensus 100.0 2.7E-58 5.7E-63 456.9 18.4 276 77-444 16-316 (336)
2 KOG3859|consensus 100.0 1.8E-58 4E-63 465.6 15.1 271 85-446 20-308 (406)
3 KOG2655|consensus 100.0 1.4E-55 3E-60 466.5 21.5 268 87-447 1-294 (366)
4 COG5019 CDC3 Septin family pro 100.0 5.6E-54 1.2E-58 451.0 23.2 270 86-447 2-298 (373)
5 PF00735 Septin: Septin; Inte 100.0 6.5E-49 1.4E-53 410.1 17.1 250 106-446 1-277 (281)
6 cd01850 CDC_Septin CDC/Septin. 100.0 1.9E-39 4E-44 338.3 24.6 248 106-443 1-274 (276)
7 KOG1547|consensus 100.0 9.9E-38 2.1E-42 310.4 2.3 116 531-648 99-214 (336)
8 KOG2655|consensus 100.0 1.9E-36 4.2E-41 321.0 5.4 115 531-648 74-188 (366)
9 COG5019 CDC3 Septin family pro 100.0 4.7E-36 1E-40 315.8 4.4 115 531-648 77-192 (373)
10 PF00735 Septin: Septin; Inte 100.0 7.9E-33 1.7E-37 289.2 0.4 117 530-649 57-173 (281)
11 KOG3859|consensus 99.9 2.3E-28 5E-33 247.8 -2.2 124 523-649 83-207 (406)
12 COG0218 Predicted GTPase [Gene 99.8 4E-21 8.6E-26 189.5 10.0 147 82-256 8-166 (200)
13 cd01850 CDC_Septin CDC/Septin. 99.8 1.4E-21 2.9E-26 204.3 3.7 114 532-648 59-173 (276)
14 TIGR03598 GTPase_YsxC ribosome 99.2 6E-10 1.3E-14 108.3 14.4 134 107-264 20-170 (179)
15 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.3E-10 5E-15 113.2 11.7 145 108-266 3-161 (196)
16 cd01853 Toc34_like Toc34-like 99.0 3E-09 6.5E-14 110.1 11.9 118 112-243 37-167 (249)
17 PRK00454 engB GTP-binding prot 98.9 1.9E-08 4.1E-13 98.1 15.0 137 108-265 27-175 (196)
18 cd01876 YihA_EngB The YihA (En 98.9 2.7E-08 5.9E-13 92.7 14.9 140 109-265 3-152 (170)
19 PF01926 MMR_HSR1: 50S ribosom 98.9 3.6E-09 7.7E-14 95.6 6.4 108 108-234 2-116 (116)
20 KOG2486|consensus 98.8 9.8E-09 2.1E-13 106.1 7.0 114 106-240 137-263 (320)
21 TIGR00991 3a0901s02IAP34 GTP-b 98.8 6.1E-08 1.3E-12 102.9 13.2 147 81-240 4-168 (313)
22 COG1159 Era GTPase [General fu 98.8 6.3E-08 1.4E-12 101.4 12.5 137 106-265 6-153 (298)
23 PF04548 AIG1: AIG1 family; I 98.7 3.3E-08 7.1E-13 99.6 9.5 139 112-267 6-163 (212)
24 PRK00089 era GTPase Era; Revie 98.7 2.6E-07 5.7E-12 97.0 15.5 67 196-265 84-152 (292)
25 PF02421 FeoB_N: Ferrous iron 98.7 3E-09 6.5E-14 102.7 0.2 130 108-265 3-142 (156)
26 cd01894 EngA1 EngA1 subfamily. 98.7 2.3E-07 5E-12 86.2 12.6 115 112-243 3-123 (157)
27 cd04163 Era Era subfamily. Er 98.6 5.1E-07 1.1E-11 83.8 13.0 56 196-252 82-139 (168)
28 cd00881 GTP_translation_factor 98.6 4.2E-07 9.2E-12 87.2 12.8 61 197-258 86-147 (189)
29 TIGR00436 era GTP-binding prot 98.6 6.3E-07 1.4E-11 93.5 14.2 117 109-245 4-127 (270)
30 cd04164 trmE TrmE (MnmE, ThdF, 98.6 1.1E-07 2.3E-12 88.3 6.8 118 112-243 7-125 (157)
31 cd04104 p47_IIGP_like p47 (47- 98.6 5.7E-07 1.2E-11 89.3 12.5 66 197-265 81-163 (197)
32 KOG1189|consensus 98.6 8.6E-09 1.9E-13 116.7 -1.3 24 325-348 852-875 (960)
33 cd04171 SelB SelB subfamily. 98.5 2.3E-06 5E-11 80.2 15.3 136 109-265 4-147 (164)
34 PRK12298 obgE GTPase CgtA; Rev 98.5 1.1E-06 2.3E-11 96.8 13.9 139 107-265 161-314 (390)
35 cd01895 EngA2 EngA2 subfamily. 98.5 2.1E-06 4.7E-11 80.6 12.4 59 196-255 84-145 (174)
36 cd01879 FeoB Ferrous iron tran 98.4 9.5E-07 2.1E-11 82.5 9.3 130 112-265 2-138 (158)
37 cd01897 NOG NOG1 is a nucleola 98.4 1.8E-06 3.9E-11 81.9 11.2 141 108-265 3-149 (168)
38 cd01898 Obg Obg subfamily. Th 98.4 1.3E-06 2.7E-11 82.9 10.0 132 108-265 3-152 (170)
39 cd04119 RJL RJL (RabJ-Like) su 98.4 9.9E-07 2.1E-11 82.9 9.1 130 109-265 4-148 (168)
40 PRK00093 GTP-binding protein D 98.4 2.9E-06 6.4E-11 94.0 14.3 131 112-255 179-314 (435)
41 TIGR03594 GTPase_EngA ribosome 98.4 2.9E-06 6.4E-11 93.7 14.0 138 112-264 178-324 (429)
42 COG0486 ThdF Predicted GTPase 98.4 7.3E-07 1.6E-11 98.3 8.8 127 106-245 216-344 (454)
43 cd00880 Era_like Era (E. coli 98.3 6.8E-06 1.5E-10 74.9 12.6 68 197-265 76-145 (163)
44 TIGR03594 GTPase_EngA ribosome 98.3 2.2E-06 4.7E-11 94.7 10.9 115 109-241 3-123 (429)
45 cd01881 Obg_like The Obg-like 98.3 2.2E-06 4.8E-11 81.4 9.2 20 112-131 2-21 (176)
46 COG1160 Predicted GTPases [Gen 98.3 2.2E-06 4.8E-11 94.3 10.2 115 107-241 5-128 (444)
47 cd01889 SelB_euk SelB subfamil 98.3 8.8E-06 1.9E-10 80.0 13.4 150 112-281 6-184 (192)
48 cd00154 Rab Rab family. Rab G 98.3 3E-06 6.5E-11 78.1 9.5 127 112-265 6-143 (159)
49 PRK03003 GTP-binding protein D 98.3 4.3E-06 9.3E-11 94.2 11.9 140 112-264 217-362 (472)
50 PRK04213 GTP-binding protein; 98.3 8E-06 1.7E-10 80.4 12.3 120 108-241 12-146 (201)
51 PRK15494 era GTPase Era; Provi 98.3 1.1E-05 2.3E-10 87.4 14.2 111 112-239 58-174 (339)
52 cd01860 Rab5_related Rab5-rela 98.3 6.3E-06 1.4E-10 77.6 10.9 134 112-265 7-144 (163)
53 PRK12297 obgE GTPase CgtA; Rev 98.3 5.7E-06 1.2E-10 91.9 12.2 109 107-237 160-286 (424)
54 cd04160 Arfrp1 Arfrp1 subfamil 98.3 1.4E-06 3E-11 82.5 6.4 109 109-240 3-122 (167)
55 PRK00093 GTP-binding protein D 98.2 5.3E-06 1.1E-10 92.0 11.0 114 108-239 4-123 (435)
56 cd04159 Arl10_like Arl10-like 98.2 3.9E-06 8.5E-11 77.4 8.4 25 108-133 2-26 (159)
57 cd04123 Rab21 Rab21 subfamily. 98.2 5.6E-06 1.2E-10 77.3 9.4 128 112-265 6-143 (162)
58 PRK09518 bifunctional cytidyla 98.2 6.7E-06 1.4E-10 97.1 11.9 132 108-254 453-590 (712)
59 cd01861 Rab6 Rab6 subfamily. 98.2 5.3E-06 1.1E-10 78.0 8.7 127 112-265 6-143 (161)
60 TIGR00993 3a0901s04IAP86 chlor 98.2 1.3E-05 2.8E-10 92.1 13.3 114 112-239 124-250 (763)
61 PRK03003 GTP-binding protein D 98.2 9.2E-06 2E-10 91.5 12.2 114 108-239 41-160 (472)
62 COG1160 Predicted GTPases [Gen 98.2 2.5E-06 5.3E-11 94.0 7.1 132 108-256 179-322 (444)
63 cd00878 Arf_Arl Arf (ADP-ribos 98.2 4.1E-06 8.9E-11 78.7 7.4 112 109-248 3-123 (158)
64 cd04106 Rab23_lke Rab23-like s 98.2 6.5E-06 1.4E-10 77.4 8.4 129 109-265 4-144 (162)
65 PRK09518 bifunctional cytidyla 98.1 1.1E-05 2.4E-10 95.2 11.7 115 107-239 277-397 (712)
66 cd04118 Rab24 Rab24 subfamily. 98.1 6.8E-06 1.5E-10 80.3 8.3 130 109-265 4-147 (193)
67 cd04138 H_N_K_Ras_like H-Ras/N 98.1 1.3E-05 2.9E-10 74.7 9.9 24 109-133 5-28 (162)
68 TIGR03156 GTP_HflX GTP-binding 98.1 1.2E-05 2.6E-10 87.4 10.8 116 112-242 195-318 (351)
69 cd01862 Rab7 Rab7 subfamily. 98.1 1.3E-05 2.8E-10 76.0 9.7 131 112-265 6-148 (172)
70 TIGR02729 Obg_CgtA Obg family 98.1 1.9E-05 4.2E-10 85.1 12.0 130 112-265 163-310 (329)
71 cd00157 Rho Rho (Ras homology) 98.1 9.3E-06 2E-10 76.9 8.5 111 112-243 6-122 (171)
72 TIGR02528 EutP ethanolamine ut 98.1 1.4E-05 3E-10 74.0 9.4 100 108-239 3-102 (142)
73 TIGR00450 mnmE_trmE_thdF tRNA 98.1 2E-05 4.3E-10 88.2 12.3 121 106-240 202-325 (442)
74 cd04124 RabL2 RabL2 subfamily. 98.1 1.9E-05 4E-10 75.2 9.9 104 109-238 4-117 (161)
75 cd01866 Rab2 Rab2 subfamily. 98.1 1.5E-05 3.3E-10 76.2 9.3 130 112-265 10-147 (168)
76 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 2.1E-05 4.5E-10 74.3 9.7 109 108-239 3-116 (168)
77 smart00175 RAB Rab subfamily o 98.1 1.5E-05 3.3E-10 74.8 8.7 125 112-265 6-143 (164)
78 PRK12299 obgE GTPase CgtA; Rev 98.1 4.5E-05 9.7E-10 82.5 13.3 130 112-265 164-309 (335)
79 cd01890 LepA LepA subfamily. 98.0 4.9E-05 1.1E-09 72.9 11.5 42 197-239 91-133 (179)
80 cd01878 HflX HflX subfamily. 98.0 4.2E-05 9.2E-10 75.6 11.4 118 112-244 47-172 (204)
81 cd04145 M_R_Ras_like M-Ras/R-R 98.0 3.7E-05 7.9E-10 72.3 10.3 127 112-265 8-145 (164)
82 cd01863 Rab18 Rab18 subfamily. 98.0 3.1E-05 6.6E-10 72.9 9.3 131 112-265 6-143 (161)
83 cd01868 Rab11_like Rab11-like. 98.0 3.6E-05 7.8E-10 72.8 9.7 22 112-133 9-30 (165)
84 cd04113 Rab4 Rab4 subfamily. 98.0 2.5E-05 5.4E-10 73.7 8.5 128 112-265 6-143 (161)
85 cd04165 GTPBP1_like GTPBP1-lik 98.0 4.3E-05 9.2E-10 78.0 10.8 69 195-264 108-177 (224)
86 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 3.8E-05 8.2E-10 72.9 9.7 127 112-265 8-145 (166)
87 PRK12296 obgE GTPase CgtA; Rev 98.0 0.00017 3.6E-09 81.8 15.7 130 112-265 165-321 (500)
88 PRK05291 trmE tRNA modificatio 97.9 4.9E-05 1.1E-09 85.2 11.5 121 106-241 214-337 (449)
89 TIGR00231 small_GTP small GTP- 97.9 8.6E-05 1.9E-09 67.6 10.9 19 112-130 7-25 (161)
90 cd04101 RabL4 RabL4 (Rab-like4 97.9 4.4E-05 9.6E-10 72.0 9.2 67 196-265 75-145 (164)
91 cd00876 Ras Ras family. The R 97.9 5.5E-05 1.2E-09 70.4 9.6 21 112-132 5-25 (160)
92 cd04156 ARLTS1 ARLTS1 subfamil 97.9 2.4E-05 5.2E-10 73.5 7.2 103 109-238 3-114 (160)
93 cd01891 TypA_BipA TypA (tyrosi 97.9 7.1E-05 1.5E-09 73.7 10.8 42 197-239 89-131 (194)
94 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 4.2E-05 9.1E-10 73.9 9.0 131 109-265 4-146 (170)
95 CHL00071 tufA elongation facto 97.9 9.9E-05 2.2E-09 81.8 12.9 61 196-257 98-161 (409)
96 cd04115 Rab33B_Rab33A Rab33B/R 97.9 4.9E-05 1.1E-09 72.8 9.0 134 112-265 8-147 (170)
97 TIGR00475 selB selenocysteine- 97.9 0.0001 2.2E-09 85.3 13.2 134 112-265 6-147 (581)
98 cd01884 EF_Tu EF-Tu subfamily. 97.9 0.00014 3E-09 72.7 12.4 62 196-258 88-152 (195)
99 cd01888 eIF2_gamma eIF2-gamma 97.9 0.00024 5.3E-09 70.9 14.0 85 197-281 107-197 (203)
100 PRK09554 feoB ferrous iron tra 97.9 3.5E-05 7.6E-10 91.6 8.8 137 108-265 6-149 (772)
101 cd04122 Rab14 Rab14 subfamily. 97.9 7.5E-05 1.6E-09 71.1 9.5 132 112-265 8-145 (166)
102 PLN03118 Rab family protein; P 97.9 0.00012 2.5E-09 73.2 11.2 127 112-265 20-158 (211)
103 cd01865 Rab3 Rab3 subfamily. 97.8 6.6E-05 1.4E-09 71.5 8.9 22 112-133 7-28 (165)
104 cd04162 Arl9_Arfrp2_like Arl9/ 97.8 9.1E-05 2E-09 71.1 9.8 102 109-240 3-114 (164)
105 cd01864 Rab19 Rab19 subfamily. 97.8 8.4E-05 1.8E-09 70.5 9.5 108 112-240 9-123 (165)
106 cd04175 Rap1 Rap1 subgroup. T 97.8 0.0001 2.3E-09 69.7 10.0 22 112-133 7-28 (164)
107 cd00882 Ras_like_GTPase Ras-li 97.8 9.2E-05 2E-09 66.3 9.1 67 197-265 69-141 (157)
108 PRK11058 GTPase HflX; Provisio 97.8 5.7E-05 1.2E-09 84.2 9.2 117 108-240 200-324 (426)
109 cd04114 Rab30 Rab30 subfamily. 97.8 8.3E-05 1.8E-09 70.5 9.0 112 112-242 13-129 (169)
110 cd01867 Rab8_Rab10_Rab13_like 97.8 7.8E-05 1.7E-09 71.1 8.8 23 112-134 9-31 (167)
111 PRK15467 ethanolamine utilizat 97.8 0.0002 4.4E-09 68.7 11.5 135 107-277 3-141 (158)
112 smart00173 RAS Ras subfamily o 97.8 0.00011 2.4E-09 69.3 9.3 24 109-133 4-27 (164)
113 cd01892 Miro2 Miro2 subfamily. 97.8 7.8E-05 1.7E-09 71.9 8.2 108 112-239 10-122 (169)
114 TIGR03597 GTPase_YqeH ribosome 97.8 1.5E-05 3.3E-10 86.9 3.3 133 107-253 156-294 (360)
115 PTZ00369 Ras-like protein; Pro 97.8 0.00011 2.4E-09 72.0 9.1 22 112-133 11-32 (189)
116 cd01893 Miro1 Miro1 subfamily. 97.8 0.00014 3.1E-09 69.4 9.6 22 112-133 6-27 (166)
117 cd04137 RheB Rheb (Ras Homolog 97.8 7E-05 1.5E-09 72.1 7.5 24 108-132 4-27 (180)
118 cd04140 ARHI_like ARHI subfami 97.8 8.8E-05 1.9E-09 70.6 8.0 24 109-133 5-28 (165)
119 cd04154 Arl2 Arl2 subfamily. 97.7 6.4E-05 1.4E-09 72.3 7.0 20 112-131 20-39 (173)
120 smart00174 RHO Rho (Ras homolo 97.7 8.9E-05 1.9E-09 70.8 8.0 103 112-239 4-116 (174)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.7 7.7E-05 1.7E-09 72.1 7.6 101 112-239 21-130 (174)
122 cd04136 Rap_like Rap-like subf 97.7 0.00013 2.8E-09 68.5 8.9 21 112-132 7-27 (163)
123 COG1084 Predicted GTPase [Gene 97.7 0.00029 6.2E-09 75.1 12.2 138 112-265 174-320 (346)
124 PRK10512 selenocysteinyl-tRNA- 97.7 0.00042 9.1E-09 80.7 14.8 134 112-265 6-147 (614)
125 cd04157 Arl6 Arl6 subfamily. 97.7 0.0001 2.2E-09 69.1 8.1 21 109-130 3-23 (162)
126 cd04139 RalA_RalB RalA/RalB su 97.7 0.00013 2.9E-09 68.3 8.8 22 112-133 6-27 (164)
127 cd04107 Rab32_Rab38 Rab38/Rab3 97.7 0.00014 2.9E-09 72.1 9.2 22 112-133 6-27 (201)
128 cd04116 Rab9 Rab9 subfamily. 97.7 0.00017 3.7E-09 68.7 9.5 22 112-133 11-32 (170)
129 cd04110 Rab35 Rab35 subfamily. 97.7 0.00015 3.2E-09 71.9 9.2 128 112-265 12-148 (199)
130 TIGR00437 feoB ferrous iron tr 97.7 8.6E-05 1.9E-09 86.0 8.6 131 113-265 1-136 (591)
131 cd04111 Rab39 Rab39 subfamily. 97.7 0.00019 4E-09 72.2 10.0 21 112-132 8-28 (211)
132 PF00350 Dynamin_N: Dynamin fa 97.7 0.00016 3.4E-09 69.0 8.8 25 109-134 2-26 (168)
133 cd04151 Arl1 Arl1 subfamily. 97.7 0.0001 2.2E-09 69.5 7.4 104 109-239 3-114 (158)
134 cd04147 Ras_dva Ras-dva subfam 97.7 0.00016 3.6E-09 71.4 9.1 24 109-133 3-26 (198)
135 smart00178 SAR Sar1p-like memb 97.7 0.00019 4.2E-09 70.2 9.4 21 112-132 23-43 (184)
136 cd04161 Arl2l1_Arl13_like Arl2 97.7 0.00014 3E-09 69.9 8.1 100 109-239 3-114 (167)
137 PF10662 PduV-EutP: Ethanolami 97.7 0.00038 8.2E-09 66.5 10.6 122 107-265 3-127 (143)
138 PF00009 GTP_EFTU: Elongation 97.6 0.0002 4.3E-09 70.3 9.0 83 197-281 94-185 (188)
139 PLN03110 Rab GTPase; Provision 97.6 0.0002 4.3E-09 72.2 9.1 22 112-133 18-39 (216)
140 PRK09866 hypothetical protein; 97.6 0.00076 1.7E-08 77.8 14.6 89 196-285 258-355 (741)
141 cd04148 RGK RGK subfamily. Th 97.6 0.00016 3.5E-09 73.2 8.4 23 109-132 4-26 (221)
142 cd04135 Tc10 TC10 subfamily. 97.6 0.0002 4.3E-09 68.4 8.5 22 112-133 6-27 (174)
143 PLN03071 GTP-binding nuclear p 97.6 0.00025 5.3E-09 71.8 9.5 125 112-265 19-153 (219)
144 cd04125 RabA_like RabA-like su 97.6 0.00029 6.3E-09 68.7 9.4 24 109-133 4-27 (188)
145 cd04112 Rab26 Rab26 subfamily. 97.6 0.00027 5.9E-09 69.4 9.1 21 112-132 6-26 (191)
146 cd04127 Rab27A Rab27a subfamil 97.6 0.00028 6.1E-09 67.8 9.0 22 112-133 10-31 (180)
147 cd04149 Arf6 Arf6 subfamily. 97.6 0.00031 6.6E-09 67.8 9.2 98 112-238 15-123 (168)
148 cd04132 Rho4_like Rho4-like su 97.6 0.0002 4.4E-09 69.4 8.1 22 112-133 6-27 (187)
149 cd04176 Rap2 Rap2 subgroup. T 97.6 0.00031 6.8E-09 66.2 9.0 22 112-133 7-28 (163)
150 cd00877 Ran Ran (Ras-related n 97.6 0.0002 4.4E-09 68.7 7.7 124 112-265 6-140 (166)
151 PLN03108 Rab family protein; P 97.6 0.0003 6.4E-09 70.6 9.0 127 112-265 12-149 (210)
152 cd04144 Ras2 Ras2 subfamily. 97.5 0.00051 1.1E-08 67.4 10.3 24 109-133 3-26 (190)
153 cd04177 RSR1 RSR1 subgroup. R 97.5 0.00036 7.8E-09 66.6 8.9 23 112-134 7-29 (168)
154 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.5 0.0004 8.6E-09 67.8 9.3 24 108-132 6-29 (183)
155 cd04155 Arl3 Arl3 subfamily. 97.5 0.00035 7.6E-09 66.6 8.7 20 112-131 20-39 (173)
156 cd00879 Sar1 Sar1 subfamily. 97.5 0.00028 6.1E-09 68.6 8.1 23 108-131 22-44 (190)
157 cd04146 RERG_RasL11_like RERG/ 97.5 0.00032 6.9E-09 66.6 8.3 20 112-131 5-24 (165)
158 PF05049 IIGP: Interferon-indu 97.5 6.7E-05 1.4E-09 82.0 4.0 58 208-265 123-197 (376)
159 smart00053 DYNc Dynamin, GTPas 97.5 0.00052 1.1E-08 71.0 10.3 41 200-241 166-208 (240)
160 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.001 2.2E-08 67.8 12.3 67 197-264 104-176 (225)
161 PRK12736 elongation factor Tu; 97.5 0.0013 2.9E-08 72.6 13.7 133 106-258 11-162 (394)
162 cd01870 RhoA_like RhoA-like su 97.5 0.00032 6.9E-09 67.0 7.5 25 108-133 4-28 (175)
163 COG5406 Nucleosome binding fac 97.5 1.7E-05 3.6E-10 89.0 -1.5 26 326-351 905-930 (1001)
164 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.5 0.00057 1.2E-08 66.2 9.3 21 112-132 8-28 (172)
165 cd04105 SR_beta Signal recogni 97.5 0.00064 1.4E-08 68.1 9.9 117 112-252 6-136 (203)
166 cd04158 ARD1 ARD1 subfamily. 97.5 0.00055 1.2E-08 65.7 9.0 100 109-238 3-113 (169)
167 PF08477 Miro: Miro-like prote 97.5 0.00013 2.8E-09 65.4 4.3 21 112-132 5-25 (119)
168 PRK12317 elongation factor 1-a 97.4 0.00075 1.6E-08 75.0 11.1 63 196-258 107-174 (425)
169 cd04166 CysN_ATPS CysN_ATPS su 97.4 0.0012 2.5E-08 66.3 11.5 62 196-258 100-165 (208)
170 cd01853 Toc34_like Toc34-like 97.4 6.1E-05 1.3E-09 78.2 2.3 79 536-636 79-167 (249)
171 cd04169 RF3 RF3 subfamily. Pe 97.4 0.00077 1.7E-08 70.7 10.5 58 197-256 95-153 (267)
172 cd04109 Rab28 Rab28 subfamily. 97.4 0.00065 1.4E-08 68.2 9.6 21 112-132 6-26 (215)
173 cd04168 TetM_like Tet(M)-like 97.4 0.00079 1.7E-08 69.3 10.3 59 197-257 88-147 (237)
174 PF03193 DUF258: Protein of un 97.4 0.00012 2.6E-09 71.3 3.7 27 107-134 37-63 (161)
175 KOG1191|consensus 97.4 0.00032 6.9E-09 78.0 7.4 122 106-240 267-404 (531)
176 cd04128 Spg1 Spg1p. Spg1p (se 97.4 0.0012 2.6E-08 64.8 10.6 22 112-133 6-27 (182)
177 cd01871 Rac1_like Rac1-like su 97.4 0.00081 1.8E-08 65.3 9.2 102 112-238 7-118 (174)
178 PRK13768 GTPase; Provisional 97.4 0.0012 2.6E-08 68.7 10.8 54 198-251 129-188 (253)
179 cd04130 Wrch_1 Wrch-1 subfamil 97.3 0.00052 1.1E-08 65.9 7.1 109 112-239 6-118 (173)
180 cd04167 Snu114p Snu114p subfam 97.3 0.00094 2E-08 67.0 9.2 41 197-238 95-136 (213)
181 PRK12735 elongation factor Tu; 97.3 0.0019 4.1E-08 71.3 12.3 61 196-257 98-161 (396)
182 cd04170 EF-G_bact Elongation f 97.3 0.0016 3.6E-08 67.7 11.2 56 197-254 88-144 (268)
183 cd01858 NGP_1 NGP-1. Autoanti 97.3 0.00023 5E-09 67.9 4.4 35 109-145 106-140 (157)
184 PTZ00133 ADP-ribosylation fact 97.3 0.00082 1.8E-08 65.8 8.1 98 112-238 23-131 (182)
185 cd04134 Rho3 Rho3 subfamily. 97.3 0.0015 3.2E-08 64.2 9.8 24 109-133 4-27 (189)
186 cd04143 Rhes_like Rhes_like su 97.3 0.0013 2.9E-08 68.0 9.8 22 112-133 6-27 (247)
187 PLN00223 ADP-ribosylation fact 97.2 0.0013 2.8E-08 64.5 9.0 99 112-239 23-132 (181)
188 cd01886 EF-G Elongation factor 97.2 0.003 6.6E-08 66.3 12.2 57 198-256 89-146 (270)
189 cd04117 Rab15 Rab15 subfamily. 97.2 0.0013 2.7E-08 62.7 8.5 22 112-133 6-27 (161)
190 cd04142 RRP22 RRP22 subfamily. 97.2 0.00091 2E-08 66.7 7.7 22 112-133 6-27 (198)
191 cd04150 Arf1_5_like Arf1-Arf5- 97.2 0.00092 2E-08 63.7 7.4 42 197-238 68-114 (159)
192 cd04131 Rnd Rnd subfamily. Th 97.2 0.0015 3.2E-08 64.0 9.0 23 109-132 5-27 (178)
193 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.2 0.0015 3.3E-08 66.7 9.4 21 112-132 7-27 (222)
194 cd04120 Rab12 Rab12 subfamily. 97.2 0.0015 3.2E-08 65.6 9.0 105 112-240 6-120 (202)
195 PRK00049 elongation factor Tu; 97.2 0.0031 6.6E-08 69.8 12.2 60 196-256 98-160 (396)
196 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.2 0.0018 4E-08 66.6 9.5 22 112-133 19-40 (232)
197 TIGR00491 aIF-2 translation in 97.2 0.0023 5E-08 74.2 11.4 42 197-239 93-135 (590)
198 TIGR00485 EF-Tu translation el 97.1 0.0042 9.1E-08 68.5 12.8 62 196-258 98-162 (394)
199 PLN03126 Elongation factor Tu; 97.1 0.0057 1.2E-07 69.4 14.0 61 196-257 167-230 (478)
200 CHL00189 infB translation init 97.1 0.0029 6.3E-08 74.9 11.9 109 108-239 247-361 (742)
201 COG3596 Predicted GTPase [Gene 97.1 0.00076 1.7E-08 70.5 6.2 41 199-240 120-163 (296)
202 PRK05306 infB translation init 97.1 0.0016 3.4E-08 77.7 9.6 106 108-239 293-403 (787)
203 TIGR00483 EF-1_alpha translati 97.1 0.0029 6.4E-08 70.4 11.3 62 197-259 109-177 (426)
204 PRK04004 translation initiatio 97.1 0.0025 5.5E-08 73.9 11.1 41 197-238 95-136 (586)
205 cd01896 DRG The developmentall 97.1 0.0055 1.2E-07 62.8 12.4 45 195-244 148-195 (233)
206 cd01852 AIG1 AIG1 (avrRpt2-ind 97.1 0.00026 5.7E-09 70.1 2.3 82 536-638 49-136 (196)
207 cd04121 Rab40 Rab40 subfamily. 97.1 0.0035 7.5E-08 62.2 10.2 127 112-265 12-148 (189)
208 cd01874 Cdc42 Cdc42 subfamily. 97.1 0.0015 3.2E-08 63.5 7.4 21 112-132 7-27 (175)
209 smart00176 RAN Ran (Ras-relate 97.1 0.0021 4.5E-08 64.5 8.4 124 112-265 1-135 (200)
210 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0018 3.9E-08 65.2 7.9 23 112-134 6-28 (202)
211 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.0 0.0026 5.6E-08 62.7 8.7 22 112-133 11-32 (182)
212 PLN03127 Elongation factor Tu; 97.0 0.0055 1.2E-07 68.9 12.3 58 196-254 147-207 (447)
213 PRK12288 GTPase RsgA; Reviewed 97.0 0.00097 2.1E-08 72.6 6.0 26 108-134 208-233 (347)
214 cd01883 EF1_alpha Eukaryotic e 97.0 0.0049 1.1E-07 62.3 10.8 61 197-257 101-173 (219)
215 smart00177 ARF ARF-like small 97.0 0.0017 3.7E-08 62.9 7.2 98 112-238 19-127 (175)
216 PF00071 Ras: Ras family; Int 97.0 0.0014 3E-08 61.6 6.3 127 112-265 5-142 (162)
217 PRK04000 translation initiatio 97.0 0.0078 1.7E-07 67.0 12.8 82 197-279 109-197 (411)
218 cd01855 YqeH YqeH. YqeH is an 97.0 0.00063 1.4E-08 66.9 3.7 57 87-145 110-173 (190)
219 PF04670 Gtr1_RagA: Gtr1/RagA 96.9 0.0017 3.6E-08 66.9 6.6 155 112-286 5-178 (232)
220 COG2262 HflX GTPases [General 96.9 0.001 2.2E-08 72.9 5.2 117 112-242 198-321 (411)
221 PLN00023 GTP-binding protein; 96.9 0.0025 5.3E-08 68.8 8.0 23 112-134 27-49 (334)
222 TIGR00487 IF-2 translation ini 96.9 0.0044 9.5E-08 71.9 10.4 106 108-239 90-201 (587)
223 KOG1423|consensus 96.9 0.0046 1E-07 65.6 9.5 116 112-244 78-204 (379)
224 COG1162 Predicted GTPases [Gen 96.8 0.0008 1.7E-08 71.4 3.4 25 109-134 168-192 (301)
225 PF00025 Arf: ADP-ribosylation 96.8 0.0014 3.1E-08 63.8 5.0 96 112-238 20-128 (175)
226 TIGR03596 GTPase_YlqF ribosome 96.8 0.0016 3.4E-08 68.5 5.6 32 112-144 124-155 (276)
227 cd04126 Rab20 Rab20 subfamily. 96.8 0.0045 9.8E-08 63.1 8.6 21 112-132 6-26 (220)
228 COG0370 FeoB Fe2+ transport sy 96.8 0.0018 3.9E-08 74.9 6.2 113 106-237 4-120 (653)
229 cd01875 RhoG RhoG subfamily. 96.8 0.0052 1.1E-07 60.5 8.8 22 112-133 9-30 (191)
230 cd04129 Rho2 Rho2 subfamily. 96.8 0.0023 4.9E-08 62.7 6.1 23 109-132 5-27 (187)
231 cd01885 EF2 EF2 (for archaea a 96.8 0.016 3.5E-07 59.3 12.4 58 197-255 97-161 (222)
232 cd04133 Rop_like Rop subfamily 96.7 0.005 1.1E-07 60.4 8.0 102 112-238 7-118 (176)
233 PTZ00132 GTP-binding nuclear p 96.7 0.0082 1.8E-07 60.1 9.7 20 112-131 15-34 (215)
234 COG4917 EutP Ethanolamine util 96.7 0.0027 5.8E-08 59.4 5.6 133 106-278 2-141 (148)
235 TIGR01393 lepA GTP-binding pro 96.7 0.018 3.9E-07 67.1 13.7 42 197-239 94-136 (595)
236 cd01857 HSR1_MMR1 HSR1/MMR1. 96.7 0.0013 2.9E-08 61.7 3.7 35 109-145 87-121 (141)
237 PRK05506 bifunctional sulfate 96.7 0.013 2.8E-07 68.7 12.2 68 196-264 127-201 (632)
238 TIGR00484 EF-G translation elo 96.7 0.013 2.8E-07 69.4 12.0 57 197-255 99-156 (689)
239 TIGR03680 eif2g_arch translati 96.6 0.029 6.2E-07 62.3 14.1 82 197-279 104-192 (406)
240 PRK00007 elongation factor G; 96.6 0.01 2.2E-07 70.4 10.9 56 198-255 100-156 (693)
241 KOG1424|consensus 96.6 0.0016 3.4E-08 72.9 3.6 42 108-153 317-358 (562)
242 TIGR00157 ribosome small subun 96.6 0.0023 5.1E-08 66.2 4.7 27 107-134 122-148 (245)
243 PRK12289 GTPase RsgA; Reviewed 96.6 0.0021 4.5E-08 70.1 4.4 25 108-133 175-199 (352)
244 PRK12739 elongation factor G; 96.6 0.012 2.6E-07 69.7 11.0 57 197-255 97-154 (691)
245 KOG1490|consensus 96.5 0.0095 2.1E-07 66.7 8.8 66 199-265 250-322 (620)
246 cd04178 Nucleostemin_like Nucl 96.5 0.0023 5E-08 62.8 3.6 33 112-145 123-155 (172)
247 PRK05124 cysN sulfate adenylyl 96.4 0.036 7.8E-07 62.9 13.2 59 196-256 130-193 (474)
248 KOG0094|consensus 96.4 0.028 6.1E-07 56.3 10.6 112 109-248 26-151 (221)
249 PRK13351 elongation factor G; 96.4 0.013 2.9E-07 69.2 9.8 59 197-257 97-156 (687)
250 TIGR01394 TypA_BipA GTP-bindin 96.3 0.032 6.9E-07 65.0 12.4 110 107-239 3-130 (594)
251 PRK10218 GTP-binding protein; 96.3 0.028 6.2E-07 65.6 11.9 109 107-239 7-134 (607)
252 PRK05433 GTP-binding protein L 96.3 0.034 7.4E-07 64.9 12.3 41 198-239 99-140 (600)
253 TIGR02034 CysN sulfate adenyly 96.2 0.045 9.8E-07 60.8 12.1 44 196-240 103-148 (406)
254 COG1161 Predicted GTPases [Gen 96.1 0.0043 9.3E-08 66.9 3.7 33 112-145 138-170 (322)
255 TIGR02836 spore_IV_A stage IV 96.1 0.03 6.5E-07 62.2 10.0 65 196-264 144-215 (492)
256 cd01876 YihA_EngB The YihA (En 96.1 0.0064 1.4E-07 56.4 4.3 90 537-647 46-139 (170)
257 PRK13796 GTPase YqeH; Provisio 96.1 0.0025 5.4E-08 69.8 1.6 37 108-145 163-203 (365)
258 TIGR03598 GTPase_YsxC ribosome 96.0 0.01 2.2E-07 57.6 5.3 90 537-647 65-158 (179)
259 COG1100 GTPase SAR1 and relate 95.9 0.025 5.5E-07 56.1 7.9 22 112-133 11-32 (219)
260 PRK12740 elongation factor G; 95.9 0.06 1.3E-06 63.5 12.0 56 197-254 84-140 (668)
261 TIGR00503 prfC peptide chain r 95.9 0.068 1.5E-06 61.5 12.0 42 197-239 104-146 (527)
262 PRK00741 prfC peptide chain re 95.8 0.052 1.1E-06 62.4 10.9 56 197-254 103-159 (526)
263 cd01854 YjeQ_engC YjeQ/EngC. 95.8 0.0098 2.1E-07 63.0 4.5 25 108-133 164-188 (287)
264 PRK00098 GTPase RsgA; Reviewed 95.8 0.011 2.3E-07 63.0 4.8 25 108-133 167-191 (298)
265 cd01849 YlqF_related_GTPase Yl 95.7 0.0097 2.1E-07 56.7 3.8 24 109-133 104-127 (155)
266 PRK09563 rbgA GTPase YlqF; Rev 95.6 0.017 3.7E-07 61.1 5.6 33 112-145 127-159 (287)
267 PTZ00416 elongation factor 2; 95.6 0.073 1.6E-06 64.5 11.6 58 197-255 116-180 (836)
268 PRK09601 GTP-binding protein Y 95.6 0.08 1.7E-06 58.1 10.6 54 210-265 182-238 (364)
269 TIGR00991 3a0901s02IAP34 GTP-b 95.5 0.0062 1.4E-07 65.2 1.9 77 536-633 86-168 (313)
270 KOG0078|consensus 95.5 0.087 1.9E-06 53.2 9.6 131 107-265 12-155 (207)
271 cd01856 YlqF YlqF. Proteins o 95.4 0.014 3E-07 56.7 3.8 33 112-145 121-153 (171)
272 cd01873 RhoBTB RhoBTB subfamil 95.2 0.13 2.9E-06 51.2 10.1 42 197-238 88-133 (195)
273 cd04103 Centaurin_gamma Centau 95.2 0.068 1.5E-06 51.1 7.6 23 109-132 4-26 (158)
274 KOG0084|consensus 95.1 0.093 2E-06 52.6 8.5 133 112-265 15-153 (205)
275 COG0536 Obg Predicted GTPase [ 95.1 0.1 2.2E-06 56.5 9.3 29 227-255 277-306 (369)
276 KOG0073|consensus 95.0 0.069 1.5E-06 52.2 7.1 126 112-265 22-159 (185)
277 COG3276 SelB Selenocysteine-sp 95.0 0.089 1.9E-06 58.5 8.8 133 112-264 6-142 (447)
278 PF09439 SRPRB: Signal recogni 95.0 0.05 1.1E-06 54.1 6.2 23 112-134 9-31 (181)
279 cd04104 p47_IIGP_like p47 (47- 94.8 0.027 5.9E-07 55.9 4.0 72 536-635 52-124 (197)
280 KOG0057|consensus 94.6 0.014 3E-07 66.3 1.4 38 86-129 355-401 (591)
281 PF00005 ABC_tran: ABC transpo 94.6 0.012 2.7E-07 54.1 0.9 19 112-130 17-35 (137)
282 cd00881 GTP_translation_factor 94.6 0.039 8.5E-07 52.7 4.2 82 535-647 61-143 (189)
283 PTZ00327 eukaryotic translatio 94.6 0.51 1.1E-05 53.5 13.6 85 197-281 141-231 (460)
284 PTZ00141 elongation factor 1- 94.5 0.25 5.4E-06 55.7 11.0 63 196-259 108-183 (446)
285 KOG2423|consensus 94.4 0.023 5E-07 62.1 2.3 69 87-157 288-362 (572)
286 TIGR00490 aEF-2 translation el 94.3 0.16 3.5E-06 60.6 9.5 41 197-238 110-151 (720)
287 COG1136 SalX ABC-type antimicr 94.3 0.022 4.8E-07 58.5 1.8 18 112-129 37-54 (226)
288 cd04164 trmE TrmE (MnmE, ThdF, 94.1 0.016 3.5E-07 53.5 0.4 47 587-636 79-125 (157)
289 PF01926 MMR_HSR1: 50S ribosom 94.1 0.022 4.8E-07 51.2 1.2 70 536-627 47-116 (116)
290 PF04548 AIG1: AIG1 family; I 94.1 0.017 3.7E-07 58.3 0.5 80 536-637 49-135 (212)
291 COG1116 TauB ABC-type nitrate/ 94.0 0.028 6E-07 58.3 1.9 19 112-130 35-53 (248)
292 cd01900 YchF YchF subfamily. 94.0 0.044 9.6E-07 57.9 3.4 20 112-131 4-23 (274)
293 KOG3886|consensus 93.9 0.13 2.7E-06 53.1 6.4 122 108-248 7-139 (295)
294 COG2229 Predicted GTPase [Gene 93.9 0.36 7.8E-06 48.0 9.3 125 108-264 13-158 (187)
295 COG1126 GlnQ ABC-type polar am 93.7 0.025 5.5E-07 57.7 1.0 19 112-130 34-52 (240)
296 cd04163 Era Era subfamily. Er 93.7 0.083 1.8E-06 48.7 4.5 57 588-646 82-140 (168)
297 COG2884 FtsE Predicted ATPase 93.7 0.034 7.4E-07 55.8 1.9 26 106-131 28-53 (223)
298 PLN00116 translation elongatio 93.7 0.35 7.6E-06 58.8 10.8 42 197-239 122-164 (843)
299 cd01859 MJ1464 MJ1464. This f 93.6 0.093 2E-06 49.7 4.6 20 112-131 107-126 (156)
300 COG5192 BMS1 GTP-binding prote 93.5 0.42 9E-06 54.6 10.0 120 112-265 75-207 (1077)
301 PRK00454 engB GTP-binding prot 93.5 0.11 2.3E-06 50.6 5.0 91 536-647 70-164 (196)
302 cd03225 ABC_cobalt_CbiO_domain 93.4 0.041 8.9E-07 54.8 1.9 18 112-129 33-50 (211)
303 PRK13543 cytochrome c biogenes 93.2 0.045 9.8E-07 55.0 1.8 18 112-129 43-60 (214)
304 cd03263 ABC_subfamily_A The AB 93.1 0.049 1.1E-06 54.7 1.9 18 112-129 34-51 (220)
305 PF03029 ATP_bind_1: Conserved 93.1 0.23 4.9E-06 51.4 6.8 18 112-129 2-19 (238)
306 PF13555 AAA_29: P-loop contai 93.1 0.054 1.2E-06 44.7 1.8 17 112-128 29-45 (62)
307 cd03293 ABC_NrtD_SsuB_transpor 93.0 0.048 1E-06 54.8 1.8 18 112-129 36-53 (220)
308 cd03262 ABC_HisP_GlnQ_permease 93.0 0.052 1.1E-06 54.1 2.0 18 112-129 32-49 (213)
309 TIGR03608 L_ocin_972_ABC putat 93.0 0.051 1.1E-06 53.9 1.9 18 112-129 30-47 (206)
310 cd03238 ABC_UvrA The excision 93.0 0.049 1.1E-06 53.7 1.8 17 112-128 27-43 (176)
311 cd03259 ABC_Carb_Solutes_like 92.9 0.046 1E-06 54.6 1.5 18 112-129 32-49 (213)
312 cd03261 ABC_Org_Solvent_Resist 92.9 0.051 1.1E-06 55.2 1.7 18 112-129 32-49 (235)
313 cd03265 ABC_DrrA DrrA is the A 92.9 0.037 8E-07 55.7 0.7 18 112-129 32-49 (220)
314 TIGR02673 FtsE cell division A 92.9 0.054 1.2E-06 54.1 1.9 18 112-129 34-51 (214)
315 PTZ00258 GTP-binding protein; 92.9 0.12 2.5E-06 57.4 4.5 20 112-131 27-46 (390)
316 KOG0054|consensus 92.8 0.049 1.1E-06 68.3 1.7 24 106-129 1157-1189(1381)
317 cd03235 ABC_Metallic_Cations A 92.8 0.058 1.3E-06 53.9 2.0 18 112-129 31-48 (213)
318 cd03226 ABC_cobalt_CbiO_domain 92.8 0.052 1.1E-06 54.0 1.6 18 112-129 32-49 (205)
319 TIGR02315 ABC_phnC phosphonate 92.8 0.056 1.2E-06 55.1 1.9 18 112-129 34-51 (243)
320 cd03258 ABC_MetN_methionine_tr 92.8 0.057 1.2E-06 54.7 1.9 18 112-129 37-54 (233)
321 cd03269 ABC_putative_ATPase Th 92.7 0.055 1.2E-06 54.0 1.7 18 112-129 32-49 (210)
322 cd03301 ABC_MalK_N The N-termi 92.7 0.047 1E-06 54.5 1.2 18 112-129 32-49 (213)
323 COG1124 DppF ABC-type dipeptid 92.7 0.059 1.3E-06 55.8 1.8 19 112-130 39-57 (252)
324 PRK00089 era GTPase Era; Revie 92.6 0.18 3.9E-06 53.0 5.5 87 536-645 53-141 (292)
325 TIGR01166 cbiO cobalt transpor 92.6 0.064 1.4E-06 52.7 1.9 18 112-129 24-41 (190)
326 PRK15177 Vi polysaccharide exp 92.6 0.057 1.2E-06 54.5 1.6 18 112-129 19-36 (213)
327 cd01894 EngA1 EngA1 subfamily. 92.5 0.11 2.4E-06 47.9 3.3 78 536-636 45-123 (157)
328 cd03268 ABC_BcrA_bacitracin_re 92.5 0.063 1.4E-06 53.5 1.8 18 112-129 32-49 (208)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 0.071 1.5E-06 50.5 2.0 18 112-129 32-49 (144)
330 cd03260 ABC_PstB_phosphate_tra 92.5 0.058 1.3E-06 54.4 1.5 18 112-129 32-49 (227)
331 PRK07560 elongation factor EF- 92.5 0.88 1.9E-05 54.5 11.6 41 197-238 111-152 (731)
332 COG0410 LivF ABC-type branched 92.4 0.056 1.2E-06 55.6 1.3 19 112-130 35-53 (237)
333 cd03218 ABC_YhbG The ABC trans 92.4 0.068 1.5E-06 54.1 1.9 18 112-129 32-49 (232)
334 cd03257 ABC_NikE_OppD_transpor 92.4 0.068 1.5E-06 53.8 1.9 18 112-129 37-54 (228)
335 KOG0092|consensus 92.4 1 2.2E-05 45.3 10.0 147 112-286 11-168 (200)
336 cd04165 GTPBP1_like GTPBP1-lik 92.4 0.2 4.3E-06 51.2 5.3 59 588-648 109-168 (224)
337 PRK14242 phosphate transporter 92.4 0.066 1.4E-06 55.0 1.8 18 112-129 38-55 (253)
338 TIGR01184 ntrCD nitrate transp 92.3 0.073 1.6E-06 54.2 2.0 18 112-129 17-34 (230)
339 TIGR03864 PQQ_ABC_ATP ABC tran 92.3 0.05 1.1E-06 55.4 0.8 18 112-129 33-50 (236)
340 PF04931 DNA_pol_phi: DNA poly 92.3 0.037 8E-07 66.5 -0.2 11 120-130 288-298 (784)
341 cd03256 ABC_PhnC_transporter A 92.3 0.071 1.5E-06 54.2 1.8 18 112-129 33-50 (241)
342 PRK10247 putative ABC transpor 92.3 0.067 1.5E-06 54.2 1.6 18 112-129 39-56 (225)
343 TIGR02770 nickel_nikD nickel i 92.2 0.08 1.7E-06 53.8 2.1 18 112-129 18-35 (230)
344 PRK11629 lolD lipoprotein tran 92.2 0.068 1.5E-06 54.3 1.6 18 112-129 41-58 (233)
345 cd03264 ABC_drug_resistance_li 92.2 0.077 1.7E-06 53.0 1.9 23 106-129 25-48 (211)
346 PRK10575 iron-hydroxamate tran 92.2 0.06 1.3E-06 56.0 1.2 18 112-129 43-60 (265)
347 cd03294 ABC_Pro_Gly_Bertaine T 92.2 0.062 1.4E-06 56.1 1.3 18 112-129 56-73 (269)
348 cd03230 ABC_DR_subfamily_A Thi 92.1 0.076 1.7E-06 51.5 1.8 18 112-129 32-49 (173)
349 PRK11264 putative amino-acid A 92.1 0.079 1.7E-06 54.3 1.9 18 112-129 35-52 (250)
350 cd03296 ABC_CysA_sulfate_impor 92.1 0.075 1.6E-06 54.2 1.7 18 112-129 34-51 (239)
351 cd00880 Era_like Era (E. coli 92.1 0.25 5.3E-06 44.7 5.0 81 535-639 44-125 (163)
352 PRK13537 nodulation ABC transp 92.1 0.061 1.3E-06 57.4 1.1 18 112-129 39-56 (306)
353 PRK14247 phosphate ABC transpo 92.1 0.073 1.6E-06 54.6 1.6 18 112-129 35-52 (250)
354 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.0 0.068 1.5E-06 54.2 1.4 18 112-129 54-71 (224)
355 PRK14241 phosphate transporter 92.0 0.076 1.6E-06 54.9 1.7 18 112-129 36-53 (258)
356 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.0 0.088 1.9E-06 52.7 2.1 18 112-129 36-53 (218)
357 PRK14239 phosphate transporter 92.0 0.08 1.7E-06 54.3 1.8 18 112-129 37-54 (252)
358 PRK13768 GTPase; Provisional 92.0 0.1 2.2E-06 54.4 2.5 85 537-644 98-188 (253)
359 PRK10584 putative ABC transpor 91.9 0.082 1.8E-06 53.4 1.8 18 112-129 42-59 (228)
360 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.9 0.079 1.7E-06 53.9 1.7 18 112-129 35-52 (238)
361 TIGR02324 CP_lyasePhnL phospho 91.9 0.083 1.8E-06 53.2 1.8 18 112-129 40-57 (224)
362 cd03216 ABC_Carb_Monos_I This 91.9 0.09 1.9E-06 50.7 2.0 18 112-129 32-49 (163)
363 cd01897 NOG NOG1 is a nucleola 91.9 0.25 5.4E-06 46.6 5.0 49 589-638 80-133 (168)
364 PLN00043 elongation factor 1-a 91.9 1.3 2.8E-05 50.1 11.4 64 196-259 108-183 (447)
365 cd03224 ABC_TM1139_LivF_branch 91.9 0.09 2E-06 52.7 2.0 18 112-129 32-49 (222)
366 cd03254 ABCC_Glucan_exporter_l 91.9 0.088 1.9E-06 53.1 2.0 18 112-129 35-52 (229)
367 cd03222 ABC_RNaseL_inhibitor T 91.9 0.086 1.9E-06 52.1 1.8 18 112-129 31-48 (177)
368 COG1117 PstB ABC-type phosphat 91.8 0.087 1.9E-06 53.8 1.8 20 109-129 37-56 (253)
369 cd03245 ABCC_bacteriocin_expor 91.8 0.092 2E-06 52.7 2.0 18 112-129 36-53 (220)
370 cd03214 ABC_Iron-Siderophores_ 91.8 0.085 1.8E-06 51.6 1.7 18 112-129 31-48 (180)
371 PRK14273 phosphate ABC transpo 91.8 0.086 1.9E-06 54.3 1.8 18 112-129 39-56 (254)
372 TIGR01978 sufC FeS assembly AT 91.8 0.083 1.8E-06 53.7 1.7 18 112-129 32-49 (243)
373 cd03229 ABC_Class3 This class 91.8 0.096 2.1E-06 51.1 2.1 18 112-129 32-49 (178)
374 PRK14248 phosphate ABC transpo 91.8 0.084 1.8E-06 54.9 1.7 18 112-129 53-70 (268)
375 TIGR00960 3a0501s02 Type II (G 91.8 0.095 2.1E-06 52.5 2.1 18 112-129 35-52 (216)
376 TIGR01189 ccmA heme ABC export 91.8 0.085 1.8E-06 52.2 1.7 18 112-129 32-49 (198)
377 PRK13638 cbiO cobalt transport 91.7 0.094 2E-06 54.7 2.1 18 112-129 33-50 (271)
378 PRK11614 livF leucine/isoleuci 91.7 0.063 1.4E-06 54.6 0.7 18 112-129 37-54 (237)
379 cd03292 ABC_FtsE_transporter F 91.7 0.097 2.1E-06 52.2 2.0 18 112-129 33-50 (214)
380 PRK14269 phosphate ABC transpo 91.7 0.076 1.7E-06 54.5 1.3 18 112-129 34-51 (246)
381 PRK13645 cbiO cobalt transport 91.6 0.086 1.9E-06 55.6 1.6 18 112-129 43-60 (289)
382 PRK11124 artP arginine transpo 91.6 0.089 1.9E-06 53.7 1.7 18 112-129 34-51 (242)
383 COG1163 DRG Predicted GTPase [ 91.6 0.5 1.1E-05 51.0 7.3 52 194-250 210-264 (365)
384 cd03295 ABC_OpuCA_Osmoprotecti 91.6 0.089 1.9E-06 53.8 1.7 18 112-129 33-50 (242)
385 PRK14252 phosphate ABC transpo 91.6 0.076 1.6E-06 55.2 1.1 18 112-129 48-65 (265)
386 PRK14259 phosphate ABC transpo 91.6 0.095 2.1E-06 54.7 1.9 18 112-129 45-62 (269)
387 PRK10895 lipopolysaccharide AB 91.6 0.074 1.6E-06 54.3 1.0 18 112-129 35-52 (241)
388 TIGR00972 3a0107s01c2 phosphat 91.6 0.095 2.1E-06 53.7 1.8 18 112-129 33-50 (247)
389 COG3839 MalK ABC-type sugar tr 91.5 0.09 2E-06 57.1 1.7 19 112-130 35-53 (338)
390 cd00820 PEPCK_HprK Phosphoenol 91.5 0.094 2E-06 47.9 1.5 19 108-127 18-36 (107)
391 COG1131 CcmA ABC-type multidru 91.5 0.089 1.9E-06 56.0 1.6 19 112-130 37-55 (293)
392 PRK13538 cytochrome c biogenes 91.5 0.1 2.2E-06 52.0 1.9 18 112-129 33-50 (204)
393 PRK01889 GTPase RsgA; Reviewed 91.5 0.087 1.9E-06 57.6 1.5 24 108-132 198-221 (356)
394 PRK10253 iron-enterobactin tra 91.5 0.062 1.3E-06 55.9 0.4 18 112-129 39-56 (265)
395 PRK14249 phosphate ABC transpo 91.5 0.1 2.2E-06 53.7 1.9 18 112-129 36-53 (251)
396 PRK11300 livG leucine/isoleuci 91.5 0.09 2E-06 54.0 1.5 18 112-129 37-54 (255)
397 PRK10418 nikD nickel transport 91.5 0.1 2.2E-06 53.8 1.9 18 112-129 35-52 (254)
398 TIGR03005 ectoine_ehuA ectoine 91.4 0.095 2.1E-06 53.9 1.7 18 112-129 32-49 (252)
399 cd03369 ABCC_NFT1 Domain 2 of 91.4 0.11 2.3E-06 51.9 2.0 18 112-129 40-57 (207)
400 COG0218 Predicted GTPase [Gene 91.4 0.26 5.6E-06 49.8 4.6 89 538-647 72-164 (200)
401 PRK14845 translation initiatio 91.4 1.3 2.8E-05 54.9 11.5 42 197-239 550-592 (1049)
402 TIGR02211 LolD_lipo_ex lipopro 91.4 0.11 2.4E-06 52.2 2.0 18 112-129 37-54 (221)
403 cd03266 ABC_NatA_sodium_export 91.4 0.11 2.4E-06 52.0 2.1 18 112-129 37-54 (218)
404 cd03247 ABCC_cytochrome_bd The 91.4 0.094 2E-06 51.1 1.5 18 112-129 34-51 (178)
405 PRK11022 dppD dipeptide transp 91.4 0.091 2E-06 56.7 1.5 18 112-129 39-56 (326)
406 PRK10744 pstB phosphate transp 91.4 0.1 2.2E-06 54.1 1.8 18 112-129 45-62 (260)
407 PRK14250 phosphate ABC transpo 91.4 0.099 2.2E-06 53.5 1.7 18 112-129 35-52 (241)
408 TIGR03740 galliderm_ABC gallid 91.3 0.1 2.2E-06 52.5 1.8 18 112-129 32-49 (223)
409 cd03234 ABCG_White The White s 91.3 0.11 2.4E-06 52.5 2.0 19 112-130 39-57 (226)
410 PRK14251 phosphate ABC transpo 91.3 0.1 2.2E-06 53.6 1.7 18 112-129 36-53 (251)
411 cd03223 ABCD_peroxisomal_ALDP 91.3 0.11 2.4E-06 50.3 1.9 18 112-129 33-50 (166)
412 PRK14240 phosphate transporter 91.3 0.1 2.2E-06 53.5 1.7 18 112-129 35-52 (250)
413 PRK14261 phosphate ABC transpo 91.3 0.1 2.2E-06 53.7 1.7 18 112-129 38-55 (253)
414 KOG0080|consensus 91.3 0.26 5.7E-06 48.1 4.3 127 112-264 17-154 (209)
415 PRK13632 cbiO cobalt transport 91.3 0.1 2.2E-06 54.6 1.7 18 112-129 41-58 (271)
416 PRK13548 hmuV hemin importer A 91.3 0.1 2.2E-06 54.0 1.7 18 112-129 34-51 (258)
417 PRK10619 histidine/lysine/argi 91.2 0.09 1.9E-06 54.3 1.3 18 112-129 37-54 (257)
418 KOG1489|consensus 91.2 1 2.2E-05 48.5 9.1 20 112-131 202-221 (366)
419 cd03300 ABC_PotA_N PotA is an 91.2 0.11 2.4E-06 52.8 1.9 19 112-130 32-50 (232)
420 TIGR03410 urea_trans_UrtE urea 91.2 0.12 2.6E-06 52.3 2.1 18 112-129 32-49 (230)
421 PRK03695 vitamin B12-transport 91.2 0.11 2.4E-06 53.5 2.0 18 112-129 28-45 (248)
422 cd01130 VirB11-like_ATPase Typ 91.2 0.092 2E-06 51.8 1.2 24 106-129 24-48 (186)
423 PRK14262 phosphate ABC transpo 91.2 0.1 2.2E-06 53.5 1.6 18 112-129 35-52 (250)
424 PRK13539 cytochrome c biogenes 91.2 0.12 2.6E-06 51.7 2.1 19 112-130 34-52 (207)
425 PRK15056 manganese/iron transp 91.2 0.098 2.1E-06 54.7 1.5 18 112-129 39-56 (272)
426 KOG0394|consensus 91.1 0.37 8E-06 48.1 5.3 136 112-265 15-159 (210)
427 PRK14245 phosphate ABC transpo 91.1 0.1 2.2E-06 53.7 1.5 18 112-129 35-52 (250)
428 PRK13547 hmuV hemin importer A 91.1 0.077 1.7E-06 55.7 0.6 18 112-129 33-50 (272)
429 COG3845 ABC-type uncharacteriz 91.1 1.2 2.5E-05 50.5 9.8 47 215-262 148-194 (501)
430 TIGR02769 nickel_nikE nickel i 91.1 0.11 2.5E-06 53.9 1.9 18 112-129 43-60 (265)
431 cd03215 ABC_Carb_Monos_II This 91.1 0.13 2.7E-06 50.5 2.0 19 112-130 32-50 (182)
432 PRK14274 phosphate ABC transpo 91.0 0.073 1.6E-06 55.0 0.4 18 112-129 44-61 (259)
433 PRK14237 phosphate transporter 91.0 0.084 1.8E-06 55.0 0.8 18 112-129 52-69 (267)
434 TIGR02323 CP_lyasePhnK phospho 91.0 0.11 2.5E-06 53.3 1.8 18 112-129 35-52 (253)
435 PRK09493 glnQ glutamine ABC tr 91.0 0.11 2.5E-06 52.8 1.8 18 112-129 33-50 (240)
436 PRK11247 ssuB aliphatic sulfon 91.0 0.11 2.4E-06 54.1 1.7 18 112-129 44-61 (257)
437 cd03250 ABCC_MRP_domain1 Domai 91.0 0.11 2.5E-06 51.5 1.7 18 112-129 37-54 (204)
438 TIGR01288 nodI ATP-binding ABC 91.0 0.084 1.8E-06 56.1 0.8 18 112-129 36-53 (303)
439 PRK15093 antimicrobial peptide 91.0 0.11 2.4E-06 56.1 1.7 18 112-129 39-56 (330)
440 KOG1145|consensus 91.0 0.7 1.5E-05 52.9 7.9 119 112-261 159-284 (683)
441 cd03244 ABCC_MRP_domain2 Domai 91.0 0.12 2.6E-06 51.8 1.9 18 112-129 36-53 (221)
442 cd03267 ABC_NatA_like Similar 90.9 0.12 2.5E-06 52.9 1.7 18 112-129 53-70 (236)
443 PRK13646 cbiO cobalt transport 90.9 0.11 2.4E-06 54.7 1.7 18 112-129 39-56 (286)
444 cd03253 ABCC_ATM1_transporter 90.9 0.12 2.5E-06 52.5 1.7 18 112-129 33-50 (236)
445 cd03251 ABCC_MsbA MsbA is an e 90.9 0.12 2.5E-06 52.4 1.7 18 112-129 34-51 (234)
446 PRK13652 cbiO cobalt transport 90.9 0.11 2.4E-06 54.5 1.5 18 112-129 36-53 (277)
447 cd03290 ABCC_SUR1_N The SUR do 90.9 0.12 2.6E-06 51.9 1.8 19 112-130 33-51 (218)
448 TIGR02868 CydC thiol reductant 90.9 0.12 2.5E-06 59.1 1.9 18 112-129 367-384 (529)
449 PRK14256 phosphate ABC transpo 90.9 0.081 1.8E-06 54.4 0.5 18 112-129 36-53 (252)
450 PRK15112 antimicrobial peptide 90.9 0.12 2.5E-06 54.0 1.7 18 112-129 45-62 (267)
451 cd03233 ABC_PDR_domain1 The pl 90.9 0.12 2.5E-06 51.7 1.6 19 112-130 39-57 (202)
452 PRK13644 cbiO cobalt transport 90.8 0.12 2.5E-06 54.2 1.7 18 112-129 34-51 (274)
453 cd03252 ABCC_Hemolysin The ABC 90.8 0.12 2.7E-06 52.4 1.8 18 112-129 34-51 (237)
454 PRK14272 phosphate ABC transpo 90.8 0.13 2.8E-06 52.7 1.9 18 112-129 36-53 (252)
455 PRK14260 phosphate ABC transpo 90.7 0.12 2.7E-06 53.4 1.8 18 112-129 39-56 (259)
456 cd03219 ABC_Mj1267_LivG_branch 90.7 0.14 3E-06 51.9 2.1 18 112-129 32-49 (236)
457 cd03278 ABC_SMC_barmotin Barmo 90.7 0.12 2.5E-06 51.7 1.5 18 112-129 28-45 (197)
458 cd01851 GBP Guanylate-binding 90.7 0.19 4.1E-06 51.4 3.0 18 112-129 13-30 (224)
459 PRK11248 tauB taurine transpor 90.7 0.14 3E-06 53.1 2.1 18 112-129 33-50 (255)
460 COG4107 PhnK ABC-type phosphon 90.7 0.16 3.6E-06 50.4 2.4 36 87-129 19-55 (258)
461 cd01899 Ygr210 Ygr210 subfamil 90.7 0.27 5.8E-06 53.1 4.3 20 112-131 4-23 (318)
462 PRK14268 phosphate ABC transpo 90.7 0.13 2.7E-06 53.3 1.7 19 112-130 44-62 (258)
463 CHL00131 ycf16 sulfate ABC tra 90.7 0.13 2.8E-06 52.8 1.8 18 112-129 39-56 (252)
464 PF00009 GTP_EFTU: Elongation 90.6 0.26 5.7E-06 48.2 3.9 82 532-645 66-148 (188)
465 cd03232 ABC_PDR_domain2 The pl 90.6 0.13 2.8E-06 50.8 1.7 18 112-129 39-56 (192)
466 PRK14257 phosphate ABC transpo 90.6 0.12 2.6E-06 55.8 1.6 19 112-130 114-132 (329)
467 TIGR00235 udk uridine kinase. 90.6 0.12 2.6E-06 51.7 1.5 24 106-129 5-29 (207)
468 PRK10908 cell division protein 90.6 0.15 3.2E-06 51.4 2.1 18 112-129 34-51 (222)
469 PRK09984 phosphonate/organopho 90.6 0.13 2.8E-06 53.2 1.8 18 112-129 36-53 (262)
470 cd03228 ABCC_MRP_Like The MRP 90.6 0.14 3.1E-06 49.5 1.9 18 112-129 34-51 (171)
471 PRK14253 phosphate ABC transpo 90.6 0.13 2.8E-06 52.8 1.7 18 112-129 35-52 (249)
472 PRK14265 phosphate ABC transpo 90.6 0.13 2.7E-06 54.0 1.6 18 112-129 52-69 (274)
473 PRK14244 phosphate ABC transpo 90.5 0.13 2.7E-06 52.9 1.6 18 112-129 37-54 (251)
474 PRK14267 phosphate ABC transpo 90.5 0.15 3.2E-06 52.5 2.1 18 112-129 36-53 (253)
475 KOG0410|consensus 90.5 0.22 4.7E-06 53.7 3.3 23 112-134 184-206 (410)
476 PRK13641 cbiO cobalt transport 90.5 0.13 2.8E-06 54.3 1.7 18 112-129 39-56 (287)
477 PRK11831 putative ABC transpor 90.5 0.13 2.8E-06 53.7 1.6 18 112-129 39-56 (269)
478 PRK14270 phosphate ABC transpo 90.5 0.13 2.9E-06 52.8 1.7 18 112-129 36-53 (251)
479 PRK13635 cbiO cobalt transport 90.5 0.12 2.7E-06 54.2 1.5 18 112-129 39-56 (279)
480 cd03231 ABC_CcmA_heme_exporter 90.5 0.15 3.2E-06 50.7 2.0 18 112-129 32-49 (201)
481 PRK14255 phosphate ABC transpo 90.5 0.14 3E-06 52.7 1.8 18 112-129 37-54 (252)
482 COG4988 CydD ABC-type transpor 90.5 0.15 3.2E-06 58.6 2.1 18 112-129 353-370 (559)
483 TIGR01277 thiQ thiamine ABC tr 90.5 0.14 3.1E-06 51.2 1.9 18 112-129 30-47 (213)
484 PRK11701 phnK phosphonate C-P 90.5 0.14 3.1E-06 52.8 1.9 18 112-129 38-55 (258)
485 PRK13631 cbiO cobalt transport 90.5 0.13 2.8E-06 55.5 1.6 18 112-129 58-75 (320)
486 TIGR02982 heterocyst_DevA ABC 90.5 0.14 3E-06 51.6 1.8 18 112-129 37-54 (220)
487 PRK13540 cytochrome c biogenes 90.5 0.15 3.4E-06 50.5 2.1 18 112-129 33-50 (200)
488 PRK13637 cbiO cobalt transport 90.4 0.12 2.7E-06 54.5 1.4 18 112-129 39-56 (287)
489 PRK14243 phosphate transporter 90.4 0.14 2.9E-06 53.4 1.6 18 112-129 42-59 (264)
490 TIGR00968 3a0106s01 sulfate AB 90.3 0.14 3.1E-06 52.2 1.7 18 112-129 32-49 (237)
491 COG1132 MdlB ABC-type multidru 90.3 0.14 3.1E-06 58.9 2.0 18 112-129 361-378 (567)
492 TIGR03411 urea_trans_UrtD urea 90.3 0.16 3.5E-06 51.8 2.1 18 112-129 34-51 (242)
493 PRK14271 phosphate ABC transpo 90.3 0.14 3.1E-06 53.7 1.8 18 112-129 53-70 (276)
494 cd03289 ABCC_CFTR2 The CFTR su 90.3 0.14 3.1E-06 53.9 1.8 19 112-130 36-54 (275)
495 PRK10078 ribose 1,5-bisphospho 90.3 0.14 3.1E-06 50.3 1.6 18 112-129 8-25 (186)
496 PRK13649 cbiO cobalt transport 90.2 0.16 3.4E-06 53.2 2.0 18 112-129 39-56 (280)
497 PRK09473 oppD oligopeptide tra 90.2 0.13 2.8E-06 55.6 1.4 18 112-129 48-65 (330)
498 PRK14254 phosphate ABC transpo 90.2 0.14 3E-06 54.1 1.6 19 112-130 71-89 (285)
499 PRK14238 phosphate transporter 90.2 0.14 3E-06 53.6 1.5 18 112-129 56-73 (271)
500 COG0194 Gmk Guanylate kinase [ 90.1 0.16 3.5E-06 50.7 1.8 25 106-130 3-28 (191)
No 1
>KOG1547|consensus
Probab=100.00 E-value=2.7e-58 Score=456.89 Aligned_cols=276 Identities=37% Similarity=0.613 Sum_probs=246.9
Q ss_pred CCCCCCCccCccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCC----C-CCCCcEEEEEE
Q psy8479 77 PLESGPFSRCWVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPS----P-HSLPSVKLKAH 148 (650)
Q Consensus 77 ~~~~~~~~~~~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s----~-~~~~T~~I~~~ 148 (650)
|.+.+.-.-+||||+++.+|+.+|.+| .||+|| ||+||+||||||||||.+.+..+.+ . ...+|++|...
T Consensus 16 p~S~~~~~lgyvGidtI~~Qm~~k~mk--~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~ 93 (336)
T KOG1547|consen 16 PMSINSNLLGYVGIDTIIEQMRKKTMK--TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSI 93 (336)
T ss_pred CCCccCCccccccHHHHHHHHHHHHHh--ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEee
Confidence 333333346899999999999999999 999999 9999999999999999998876522 2 45689999999
Q ss_pred EEEeeCCceeec---------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCc
Q psy8479 149 TYELQENNVKLK---------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKS 213 (650)
Q Consensus 149 ~~~l~e~g~~L~---------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~ 213 (650)
++.|.|+|++|+ .+||+||++||.+||++||++|..+.|. +.+.|+|||||||||+|+||.|++
T Consensus 94 thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~-kripDTRVHcclyFi~ptGhsLrp 172 (336)
T KOG1547|consen 94 THVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIARE-KRIPDTRVHCCLYFIPPTGHSLRP 172 (336)
T ss_pred eeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhh-hcCCCceEEEEEEEeCCCCCccCc
Confidence 999999999876 6899999999999999999999999998 489999999999999999999999
Q ss_pred chHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCCchh--HHHHHHHhhhccCCCCCcccc
Q psy8479 214 LDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDET--MSDVNAAMTIFSSIPCDRSLI 291 (650)
Q Consensus 214 lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d~~~--~~~~~~~~~~~~~~P~~~~~~ 291 (650)
+||++||+|.+-|||||||+|||+||-+|..+||++|++.|..|+|++|+...+|++ ...+|.+++.. +|
T Consensus 173 lDieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~--iP------ 244 (336)
T KOG1547|consen 173 LDIEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRES--IP------ 244 (336)
T ss_pred ccHHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhh--CC------
Confidence 999999999999999999999999999999999999999999999999988755443 34477888765 99
Q ss_pred ccccCcccccCCCCCCCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 292 HTIFPPCLRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEE 371 (650)
Q Consensus 292 ~t~~~~c~~st~~~s~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedee 371 (650)
||| ||| .+...++|++|.++...| +.
T Consensus 245 ---FAV-VGs----------------d~e~~vnG~~vlGRktrW-------g~--------------------------- 270 (336)
T KOG1547|consen 245 ---FAV-VGS----------------DKEIQVNGRRVLGRKTRW-------GI--------------------------- 270 (336)
T ss_pred ---eEE-ecc----------------cceEEEcCeEeecccccc-------ce---------------------------
Confidence 999 999 677889999999999999 54
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhh
Q psy8479 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444 (650)
Q Consensus 372 eeeEeeEeeeeeeeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~ 444 (650)
-+.+...+++|..|+.+++++|+|++++.++..|||.||.+++.+.
T Consensus 271 ---------------------------IeVen~nhCeF~~LRdfliRtHlQdlke~Ts~iHyE~yR~krLn~~ 316 (336)
T KOG1547|consen 271 ---------------------------IEVENLNHCEFVLLRDFLIRTHLQDLKETTSNIHYETYRAKRLNEL 316 (336)
T ss_pred ---------------------------EEecccccchhHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhh
Confidence 3345667999999999999999999999999999999999999874
No 2
>KOG3859|consensus
Probab=100.00 E-value=1.8e-58 Score=465.59 Aligned_cols=271 Identities=65% Similarity=0.990 Sum_probs=257.5
Q ss_pred cCccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-
Q psy8479 85 RCWVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK- 160 (650)
Q Consensus 85 ~~~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~- 160 (650)
.+.|||++||+|+..|++. .||.|| ||++|+||||||+||||+++...+++|..+++.+...+|+|++.+++|+
T Consensus 20 ~GHvGFdsLPdQLV~ksv~--~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKL 97 (406)
T KOG3859|consen 20 AGHVGFDSLPDQLVNKSVS--QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKL 97 (406)
T ss_pred cCccCcccChHHHHHHHHh--cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEE
Confidence 6899999999999999999 999999 9999999999999999999999999999999999999999999998775
Q ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCC
Q psy8479 161 --------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKV 226 (650)
Q Consensus 161 --------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~v 226 (650)
..++++|++||+.||+.||++|.+|+|++..+.|+|||+|||||.|+||+|+.+|+.+||.|..+|
T Consensus 98 tiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskV 177 (406)
T KOG3859|consen 98 TIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKV 177 (406)
T ss_pred EEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhh
Confidence 679999999999999999999999999987899999999999999999999999999999999999
Q ss_pred CeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCCchhHHHHHHHhhhccCCCCCccccccccCcccccCCCCC
Q psy8479 227 NIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSS 306 (650)
Q Consensus 227 nvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d~~~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s 306 (650)
||||||+|||+.+.+||..||.+|+..|..+||+||+||.|+++..+.|..++.+ +| ||| |||
T Consensus 178 NIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~--lP---------FAV-vGS----- 240 (406)
T KOG3859|consen 178 NIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHS--LP---------FAV-VGS----- 240 (406)
T ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcC--Cc---------eeE-ecc-----
Confidence 9999999999999999999999999999999999999999999999999999987 99 999 999
Q ss_pred CCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 307 PPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386 (650)
Q Consensus 307 ~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeee 386 (650)
...+++++|-|+++.|+| +.
T Consensus 241 -----------te~vKvgnkmvraRqyPw-------G~------------------------------------------ 260 (406)
T KOG3859|consen 241 -----------TEEVKVGNKMVKARQYPW-------GT------------------------------------------ 260 (406)
T ss_pred -----------hHhhhhhhhhhhhccCCC-------Cc------------------------------------------
Confidence 667888899999999999 54
Q ss_pred hhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhhc
Q psy8479 387 EEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446 (650)
Q Consensus 387 eeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~d 446 (650)
-+.+.+.|++|++|++++++++|+++++.+|.+||++||+.+++++..
T Consensus 261 ------------v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf 308 (406)
T KOG3859|consen 261 ------------VQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGF 308 (406)
T ss_pred ------------eeecchhhhHHHHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCC
Confidence 345566799999999999999999999999999999999999998754
No 3
>KOG2655|consensus
Probab=100.00 E-value=1.4e-55 Score=466.49 Aligned_cols=268 Identities=41% Similarity=0.719 Sum_probs=239.9
Q ss_pred ccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCC-----CCCCCCCcEEEEEEEEEeeCCcee
Q psy8479 87 WVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFEST-----PSPHSLPSVKLKAHTYELQENNVK 158 (650)
Q Consensus 87 ~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~-----~s~~~~~T~~I~~~~~~l~e~g~~ 158 (650)
+||++++|+|++|+.+| +||.|| ||+||+|||||||+||++.+... ++.++.+|+.|..+...|.++|+.
T Consensus 1 ~vg~~~lP~q~~r~~~K--kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 1 YVGFANLPNQVHRKSVK--KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred CCccccChHHHHHHHHh--cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeE
Confidence 58999999999999999 999999 99999999999999999977654 556777899999999999999987
Q ss_pred ec---------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc
Q psy8479 159 LK---------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD 223 (650)
Q Consensus 159 L~---------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~ 223 (650)
|+ ..||.+|++||++||++||.+|+++.|. .+.|+|||||||||+|+||+|+++|+++||.|+
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~--~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~ 156 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRS--KIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS 156 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcc--cccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh
Confidence 75 6799999999999999999999999995 799999999999999999999999999999999
Q ss_pred cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCCch--hHHHHHHHhhhccCCCCCccccccccCccccc
Q psy8479 224 SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDE--TMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRS 301 (650)
Q Consensus 224 ~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d~~--~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~s 301 (650)
.+||+||||+|||+||..|+..+|++|++.|..++|++|.||.++. +..+.+..+... +| ||| |||
T Consensus 157 ~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~d~~~~~~~~~l~~~--~P---------FAI-igs 224 (366)
T KOG2655|consen 157 KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDESDEELKEEEQDLKSS--IP---------FAI-IGS 224 (366)
T ss_pred ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcchhhhHHHHHHHhhc--CC---------eEE-Eec
Confidence 9999999999999999999999999999999999999999997643 444445555544 99 999 888
Q ss_pred CCCCCCCCcccccccccccccCCCCc-cccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 302 TSPSSPPHFHSLNILAMQKVPGSNPT-IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380 (650)
Q Consensus 302 t~~~s~~~~~~~nil~~~~~~~~~~t-i~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEee 380 (650)
...+...|+. |+++.|+| |.
T Consensus 225 ----------------~~~~e~~G~~~vrgR~YpW-------G~------------------------------------ 245 (366)
T KOG2655|consen 225 ----------------NTEIEEKGKKRVRGRKYPW-------GT------------------------------------ 245 (366)
T ss_pred ----------------CceeecCCceEeeceecCC-------ce------------------------------------
Confidence 3335667777 99999999 55
Q ss_pred hhhhhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhhcc
Q psy8479 381 EEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447 (650)
Q Consensus 381 eeeeeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~d~ 447 (650)
-+.+...++||..|+.+++++|+++++..+...|||.||.+++......
T Consensus 246 ------------------veien~~h~DF~~Lr~~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~ 294 (366)
T KOG2655|consen 246 ------------------VEIENPEHCDFKKLRNLLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYK 294 (366)
T ss_pred ------------------eeccCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc
Confidence 3344556999999999999999999999999999999999999886654
No 4
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.6e-54 Score=450.96 Aligned_cols=270 Identities=37% Similarity=0.677 Sum_probs=236.1
Q ss_pred CccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCC------CCCCCcEEEEEEEEEeeCCc
Q psy8479 86 CWVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPS------PHSLPSVKLKAHTYELQENN 156 (650)
Q Consensus 86 ~~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s------~~~~~T~~I~~~~~~l~e~g 156 (650)
++||++++|.|++++..+ +|+.|| ||.||+||||||||||++.+..... ....+|+.|..+...|.++|
T Consensus 2 ~~vgi~~l~~~r~~~~~k--~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 2 GYVGISNLPNQRHRKLSK--KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CcCCcCcchHHHHHHHHh--cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCC
Confidence 589999999999999999 999999 9999999999999999996554421 12347889999999999999
Q ss_pred eeec---------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHH
Q psy8479 157 VKLK---------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKK 221 (650)
Q Consensus 157 ~~L~---------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~ 221 (650)
+.+. ..||.+|++||++||+.||.+|+++.|.. .+.|+|||||||||.|+||+|+++||++||+
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~-~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ 158 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNP-KFKDTRVHACLYFIRPTGHGLKPLDIEAMKR 158 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhcccccc-ccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence 8765 67999999999999999999999999995 7999999999999999999999999999999
Q ss_pred hccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEe-CCCCch--hHHHHHHHhhhccCCCCCccccccccCcc
Q psy8479 222 LDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYE-FPTDDE--TMSDVNAAMTIFSSIPCDRSLIHTIFPPC 298 (650)
Q Consensus 222 L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~-f~~d~~--~~~~~~~~~~~~~~~P~~~~~~~t~~~~c 298 (650)
|+++||+||||+|||+||.+|+..+|++|+++|..++|++|. +..++. +..+.++.+.. ++| |||
T Consensus 159 ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~--~~P---------FAI- 226 (373)
T COG5019 159 LSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRS--LIP---------FAI- 226 (373)
T ss_pred HhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhh--cCC---------eEE-
Confidence 999999999999999999999999999999999999999997 222222 33445555554 499 999
Q ss_pred cccCCCCCCCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 299 LRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378 (650)
Q Consensus 299 ~~st~~~s~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeE 378 (650)
||| ...+..+|.+++++.|+| |.
T Consensus 227 I~S----------------~~~~~~~~~~vrgR~YpW-------G~---------------------------------- 249 (373)
T COG5019 227 IGS----------------NTEIENGGEQVRGRKYPW-------GV---------------------------------- 249 (373)
T ss_pred Eec----------------cceeccCCceeeeeccCC-------cc----------------------------------
Confidence 899 445666778999999999 54
Q ss_pred hhhhhhhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhhcc
Q psy8479 379 EEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447 (650)
Q Consensus 379 eeeeeeeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~d~ 447 (650)
-+.+...++||..|+..++.+|++++++.+...+|+.||..++......
T Consensus 250 --------------------v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~ 298 (373)
T COG5019 250 --------------------VEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSGLKNS 298 (373)
T ss_pred --------------------eecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344556999999999999999999999999999999999999887664
No 5
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=100.00 E-value=6.5e-49 Score=410.05 Aligned_cols=250 Identities=42% Similarity=0.756 Sum_probs=191.2
Q ss_pred CCceee---cCCCCCChhhHhhhhhCcCCCCCC------CCCCCCcEEEEEEEEEeeCCceeec---------------c
Q psy8479 106 PGKAYK---PCETGLGKSTLMDSLFNTSFESTP------SPHSLPSVKLKAHTYELQENNVKLK---------------E 161 (650)
Q Consensus 106 ~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~------s~~~~~T~~I~~~~~~l~e~g~~L~---------------~ 161 (650)
+|+.|| ||+||+|||||||+||++.+.... ..+..++..|....+.+.++++.+. .
T Consensus 1 kg~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~ 80 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS 80 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch
Confidence 489999 999999999999999998776542 1234567788888888988887665 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHH
Q psy8479 162 DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKS 241 (650)
Q Consensus 162 ~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~ 241 (650)
.||.+|++||++||+.||.+|.++.|. ...|+|||||||||+|++|+|+++||++||.|+.+|||||||+|||+||++
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~--~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRP--RIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-T--TS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccccc--CcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHH
Confidence 799999999999999999999999994 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCcEEeCCCCchh--HHHHHHHhhhccCCCCCccccccccCcccccCCCCCCCCcccccccccc
Q psy8479 242 ELQKFKTNIMTELTSNGVHIYEFPTDDET--MSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLNILAMQ 319 (650)
Q Consensus 242 El~~~K~~I~~~L~~~~I~if~f~~d~~~--~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s~~~~~~~nil~~~ 319 (650)
|++.+|+.|+++|+.++|++|.|+.++.+ ....+..++.. +| ||| ||| ..
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~~~~~~~e~~~~~~~~~~--~P---------Fav-i~s----------------~~ 210 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPEDDDDDEEIEENQKIRSM--LP---------FAV-IGS----------------NT 210 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----------HCHHHHHHHHHC---S---------EEE--------------------SS
T ss_pred HHHHHHHHHHHHHHHcCceeeccccccccccccccccccccc--ee---------eEE-Eec----------------ce
Confidence 99999999999999999999999864332 23344555544 89 999 898 33
Q ss_pred cccC-CCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHh
Q psy8479 320 KVPG-SNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398 (650)
Q Consensus 320 ~~~~-~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeeeeeeeeeeeeeee 398 (650)
.... +|+.++++.|+| |.
T Consensus 211 ~~~~~~g~~~~gR~YpW-------G~------------------------------------------------------ 229 (281)
T PF00735_consen 211 EIENSNGKRVRGRKYPW-------GT------------------------------------------------------ 229 (281)
T ss_dssp EEEE-SSSEEEEEEETT-------EE------------------------------------------------------
T ss_pred eeeccCCcEEeeeecCC-------cc------------------------------------------------------
Confidence 3444 799999999999 54
Q ss_pred hhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhhc
Q psy8479 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446 (650)
Q Consensus 399 dE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~d 446 (650)
-+.+...|+||..|++.++++|++++++.++..|||.||++++.....
T Consensus 230 vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~~ 277 (281)
T PF00735_consen 230 VEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRKN 277 (281)
T ss_dssp EETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH--
T ss_pred ccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 445566799999999999999999999999999999999999877543
No 6
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=100.00 E-value=1.9e-39 Score=338.34 Aligned_cols=248 Identities=47% Similarity=0.815 Sum_probs=211.6
Q ss_pred CCceee---cCCCCCChhhHhhhhhCcCCCCCCC------CCCCCcEEEEEEEEEeeCCceeec---------------c
Q psy8479 106 PGKAYK---PCETGLGKSTLMDSLFNTSFESTPS------PHSLPSVKLKAHTYELQENNVKLK---------------E 161 (650)
Q Consensus 106 ~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s------~~~~~T~~I~~~~~~l~e~g~~L~---------------~ 161 (650)
+|+.|+ ||+||+|||||||+||+..+..... .+..+|+.+......+.++|+.+. .
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence 489999 9999999999999999998765422 234667778777777777774432 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHH
Q psy8479 162 DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKS 241 (650)
Q Consensus 162 ~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~ 241 (650)
.+|++|++||++||+.||.++.++.|.. .+.|+|||||||||.|++|++++.|+++|++|+..+|+|||++|+|+++.+
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~-~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNP-RIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPE 159 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHH
Confidence 7999999999999999999999999964 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCcEEeCCCCchh--HHHHHHHhhhccCCCCCccccccccCcccccCCCCCCCCcccccccccc
Q psy8479 242 ELQKFKTNIMTELTSNGVHIYEFPTDDET--MSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLNILAMQ 319 (650)
Q Consensus 242 El~~~K~~I~~~L~~~~I~if~f~~d~~~--~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s~~~~~~~nil~~~ 319 (650)
|+..+|+.|++.|..++|++|.|+.++++ ....+..+. .++| ||| +|| ..
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~P---------fav-i~s----------------~~ 211 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDEEDDETIEENKKLR--SLIP---------FAV-VGS----------------NE 211 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCcccHHHHHHHHhhc--cCCC---------cEE-Eec----------------Cc
Confidence 99999999999999999999999864432 223344444 4488 999 888 34
Q ss_pred cccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHhh
Q psy8479 320 KVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399 (650)
Q Consensus 320 ~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeeeeeeeeeeeeeeed 399 (650)
.+..+|+.++++.|+| |. -
T Consensus 212 ~~~~~g~~~~~R~y~W-------G~------------------------------------------------------~ 230 (276)
T cd01850 212 EVEVNGKKVRGRKYPW-------GV------------------------------------------------------V 230 (276)
T ss_pred eeecCCcEEEEecCCc-------cE------------------------------------------------------E
Confidence 4555699999999999 65 4
Q ss_pred hhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhh
Q psy8479 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443 (650)
Q Consensus 400 E~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~ 443 (650)
+.+...|+||..|+..++++|++++++.++..|||.||..++..
T Consensus 231 ~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~l~~ 274 (276)
T cd01850 231 EVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRTEKLSS 274 (276)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 45566799999999999999999999999999999999998864
No 7
>KOG1547|consensus
Probab=100.00 E-value=9.9e-38 Score=310.41 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=103.7
Q ss_pred cCccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHH
Q psy8479 531 DATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLV 610 (650)
Q Consensus 531 ~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~ 610 (650)
+++++|+||+||||||||+|||++|| .||++||+.||..+......--..+.++|||||||||| |+||||+|+|+||+
T Consensus 99 E~gVklkltviDTPGfGDqInN~ncW-ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyF-i~ptGhsLrplDie 176 (336)
T KOG1547|consen 99 EKGVKLKLTVIDTPGFGDQINNDNCW-EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYF-IPPTGHSLRPLDIE 176 (336)
T ss_pred ecceEEEEEEecCCCcccccCccchh-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEE-eCCCCCccCcccHH
Confidence 47899999999999999999999999 79999999999543222222223358999999999999 99999999999999
Q ss_pred HHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 611 CMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 611 ~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
+||+|++.|||||||||||+||.+|...||++|++++.
T Consensus 177 flkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~ 214 (336)
T KOG1547|consen 177 FLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELE 214 (336)
T ss_pred HHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 8
>KOG2655|consensus
Probab=100.00 E-value=1.9e-36 Score=320.97 Aligned_cols=115 Identities=29% Similarity=0.407 Sum_probs=108.5
Q ss_pred cCccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHH
Q psy8479 531 DATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLV 610 (650)
Q Consensus 531 ~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~ 610 (650)
++++.|.|||||||||||++||+.|| .+|++||++||+ +|+..+.+.+++.++|+|||||||| |+|+||||+|+||+
T Consensus 74 e~g~~l~LtvidtPGfGD~vdns~~w-~pi~~yi~~q~~-~yl~~E~~~~R~~~~D~RVH~cLYF-I~P~ghgL~p~Di~ 150 (366)
T KOG2655|consen 74 ENGVKLNLTVIDTPGFGDAVDNSNCW-RPIVNYIDSQFD-QYLDEESRLNRSKIKDNRVHCCLYF-ISPTGHGLKPLDIE 150 (366)
T ss_pred CCCeEEeeEEeccCCCcccccccccc-hhhhHHHHHHHH-HHHhhhccCCcccccCCceEEEEEE-eCCCCCCCcHhhHH
Confidence 45899999999999999999999999 699999999994 5555666888899999999999999 99999999999999
Q ss_pred HHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 611 CMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 611 ~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
+||+|+.+||+||||||||+||++|++.||++||++|.
T Consensus 151 ~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 151 FMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIE 188 (366)
T ss_pred HHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 9
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.7e-36 Score=315.80 Aligned_cols=115 Identities=24% Similarity=0.314 Sum_probs=103.9
Q ss_pred cCccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCC-ccCCCCceeeEeeecCCCcccCCcchH
Q psy8479 531 DATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPV-RIPTTRLRCASKNSDLPLAECLKSLDL 609 (650)
Q Consensus 531 ~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~-~~~d~rvh~~lyf~i~ptgh~l~~~Di 609 (650)
+++..+.|||||||||||++||+.|| .+|++||++||+.+. ..+.+..+. ++.|+|||||||| |+||||||+++||
T Consensus 77 e~~~~~~l~vIDtpGfGD~idNs~~w-e~I~~yI~~q~d~yl-~~E~~~~R~~~~~D~RVH~cLYF-I~Ptgh~l~~~DI 153 (373)
T COG5019 77 EDGFHLNLTVIDTPGFGDFIDNSKCW-EPIVDYIDDQFDQYL-DEEQKIKRNPKFKDTRVHACLYF-IRPTGHGLKPLDI 153 (373)
T ss_pred cCCeEEEEEEeccCCccccccccccH-HHHHHHHHHHHHHHH-HHhhccccccccccCceEEEEEE-ecCCCCCCCHHHH
Confidence 34899999999999999999999999 799999999996432 233333333 8999999999999 9999999999999
Q ss_pred HHHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 610 VCMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 610 ~~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
++||+|+.+|||||||||||+||.+||+.||++||++|.
T Consensus 154 e~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~ 192 (373)
T COG5019 154 EAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLE 192 (373)
T ss_pred HHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985
No 10
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.97 E-value=7.9e-33 Score=289.16 Aligned_cols=117 Identities=28% Similarity=0.361 Sum_probs=97.3
Q ss_pred ccCccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchH
Q psy8479 530 CDATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDL 609 (650)
Q Consensus 530 ~~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di 609 (650)
.+++.++.||||||||||+++|++.|| .+|.+||++||+.+ +..+.+.++..+.|+|||||||| |+||||+|+++||
T Consensus 57 ~e~~~~l~LtiiDTpGfGd~i~n~~~~-~~I~~yI~~qf~~~-l~eE~~~~R~~~~D~RVH~cLYf-I~pt~~~L~~~Di 133 (281)
T PF00735_consen 57 EENGVKLNLTIIDTPGFGDNIDNSDCW-EPIVDYIESQFDSY-LEEESKINRPRIEDTRVHACLYF-IPPTGHGLKPLDI 133 (281)
T ss_dssp EETCEEEEEEEEEEC-CSSSSTHCHHH-HHHHHHHHHHHHHH-HHHHTSSS-TTS----EEEEEEE-E-TTSSSS-HHHH
T ss_pred ccCCcceEEEEEeCCCccccccchhhh-HHHHHHHHHHHHHH-HHHhhcccccCcCCCCcceEEEE-EcCCCccchHHHH
Confidence 345899999999999999999999999 79999999999642 22233455578999999999999 9999999999999
Q ss_pred HHHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhccC
Q psy8479 610 VCMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLPS 649 (650)
Q Consensus 610 ~~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~~ 649 (650)
++||+|+.+|||||||||||+||++|++.||++|+++|+.
T Consensus 134 ~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~ 173 (281)
T PF00735_consen 134 EFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLEE 173 (281)
T ss_dssp HHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863
No 11
>KOG3859|consensus
Probab=99.93 E-value=2.3e-28 Score=247.77 Aligned_cols=124 Identities=35% Similarity=0.351 Sum_probs=106.3
Q ss_pred ccceeeeccCccccccccccCCCCCcccccccccccccccccccccCCC-CCCCCCCCCCCccCCCCceeeEeeecCCCc
Q psy8479 523 AEMTLSECDATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGA-GMPPARDWSPVRIPTTRLRCASKNSDLPLA 601 (650)
Q Consensus 523 ~e~~~~~~~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~-~~~~~~~~~~~~~~d~rvh~~lyf~i~ptg 601 (650)
+-++.. .+.+++|+||||||-||||+||.+.+. ++|++||++||..+ -++-..++....+.|+|||+|||| |.|||
T Consensus 83 ~~Tyel-qEsnvrlKLtiv~tvGfGDQinK~~Sy-k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF-I~PTG 159 (406)
T KOG3859|consen 83 ANTYEL-QESNVRLKLTIVDTVGFGDQINKEDSY-KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF-ISPTG 159 (406)
T ss_pred cchhhh-hhcCeeEEEEEEeecccccccCccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE-ecCCC
Confidence 444433 356899999999999999999999999 79999999999542 222222333445889999999999 99999
Q ss_pred ccCCcchHHHHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhccC
Q psy8479 602 ECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLPS 649 (650)
Q Consensus 602 h~l~~~Di~~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~~ 649 (650)
|+|+.+|+-+||+|..+||||||||||||++..||+.||..||..|.+
T Consensus 160 H~LKslDLvtmk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~s 207 (406)
T KOG3859|consen 160 HSLKSLDLVTMKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVS 207 (406)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998754
No 12
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=4e-21 Score=189.51 Aligned_cols=147 Identities=23% Similarity=0.307 Sum_probs=118.3
Q ss_pred CCccCccCCCCCCcccccccccCCCCceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEE-------EeeC
Q psy8479 82 PFSRCWVNTRTPPPNFLEKSWNFIPGKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTY-------ELQE 154 (650)
Q Consensus 82 ~~~~~~vG~~~lp~Q~~rk~~~~k~g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~-------~l~e 154 (650)
.|..+.+.+..+|..- . ++++| |||||||||||||+|++++.++++|++||+|+.|+.+.+ ++.+
T Consensus 8 ~f~~sa~~~~~~P~~~-----~--~EIaF-~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPG 79 (200)
T COG0218 8 KFITSAPDIKQYPEDD-----L--PEIAF-AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPG 79 (200)
T ss_pred EEEEecCCHhhCCCCC-----C--cEEEE-EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCC
Confidence 3445566666666662 2 69999 999999999999999999999999999999999986432 4445
Q ss_pred Cceeec----chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCee
Q psy8479 155 NNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNII 229 (650)
Q Consensus 155 ~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvI 229 (650)
+|+.-. .+.|+.++ ..||+.+.++++.+ .+.|.| |.++..|++|++||.. .++++
T Consensus 80 YGyAkv~k~~~e~w~~~i-------~~YL~~R~~L~~vv-lliD~r------------~~~~~~D~em~~~l~~~~i~~~ 139 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLI-------EEYLEKRANLKGVV-LLIDAR------------HPPKDLDREMIEFLLELGIPVI 139 (200)
T ss_pred cccccCCHHHHHHHHHHH-------HHHHhhchhheEEE-EEEECC------------CCCcHHHHHHHHHHHHcCCCeE
Confidence 554322 55677666 78998887777665 566666 9999999999999985 67999
Q ss_pred eeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 230 PIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 230 PVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
.|+||+|+++..|..+....+++.|..
T Consensus 140 vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 140 VVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred EEEEccccCChhHHHHHHHHHHHHhcC
Confidence 999999999999999988999887755
No 13
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.83 E-value=1.4e-21 Score=204.26 Aligned_cols=114 Identities=28% Similarity=0.353 Sum_probs=101.4
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCC-CccCCCCceeeEeeecCCCcccCCcchHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSP-VRIPTTRLRCASKNSDLPLAECLKSLDLV 610 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~-~~~~d~rvh~~lyf~i~ptgh~l~~~Di~ 610 (650)
++.++.|+||||||||++++++.|| .+|++||++||..+. ..+.+..+ ..+.|+|||||||| +.|++|++++.|++
T Consensus 59 ~g~~~~l~iiDTpGfgd~~~~~~~~-~~i~~yi~~q~~~~l-~~e~~~~r~~~~~d~rvh~~ly~-i~~~~~~l~~~D~~ 135 (276)
T cd01850 59 NGVKLKLTVIDTPGFGDNINNSDCW-KPIVDYIDDQFDQYL-REESRIKRNPRIPDTRVHACLYF-IEPTGHGLKPLDIE 135 (276)
T ss_pred CCEEEEEEEEecCCccccccchhhH-HHHHHHHHHHHHHHH-HHHhhhcccccCCCCceEEEEEE-EeCCCCCCCHHHHH
Confidence 4788999999999999999999999 799999999985422 22223333 68999999999999 88999999999999
Q ss_pred HHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 611 CMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 611 ~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
+|+.|+..+||||||+|+|+|+.+|+..+|+.|++.|.
T Consensus 136 ~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~ 173 (276)
T cd01850 136 FMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIE 173 (276)
T ss_pred HHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875
No 14
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.15 E-value=6e-10 Score=108.34 Aligned_cols=134 Identities=23% Similarity=0.376 Sum_probs=90.8
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-----------hhHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-----------DSFKSIVDYID 172 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-----------~~w~~Ii~yI~ 172 (650)
-+.+ +|.+|+|||||||.|++.......+..++.|..+..+. + ++++.+. . ..|..++
T Consensus 20 ~i~i-vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~---- 91 (179)
T TIGR03598 20 EIAF-AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V-NDGFRLVDLPGYGYAKVSKEEKEKWQKLI---- 91 (179)
T ss_pred EEEE-EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e-CCcEEEEeCCCCccccCChhHHHHHHHHH----
Confidence 3444 99999999999999999875555566666776654322 2 2233322 1 1222222
Q ss_pred HHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHH
Q psy8479 173 NQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIM 251 (650)
Q Consensus 173 ~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~ 251 (650)
..|+.. + .+.|+++|++..+ +++...++++++.+.. ..+++.|++|.|.+...++......++
T Consensus 92 ---~~~l~~-----~-------~~~~~ii~vvd~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~ 155 (179)
T TIGR03598 92 ---EEYLEK-----R-------ENLKGVVLLMDIR-HPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIK 155 (179)
T ss_pred ---HHHHHh-----C-------hhhcEEEEEecCC-CCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 233322 1 1357888888764 6799999998888874 679999999999999888888888888
Q ss_pred HHHHHCC--CcEEeC
Q psy8479 252 TELTSNG--VHIYEF 264 (650)
Q Consensus 252 ~~L~~~~--I~if~f 264 (650)
+.|...+ .++|.+
T Consensus 156 ~~l~~~~~~~~v~~~ 170 (179)
T TIGR03598 156 KALKKDADDPSVQLF 170 (179)
T ss_pred HHHhhccCCCceEEE
Confidence 8887754 245544
No 15
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.15 E-value=2.3e-10 Score=113.20 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=90.2
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHH---HHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSI---VDYIDNQFEAYLQEEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~I---i~yI~~qf~~yL~eE~ 183 (650)
+.+ ||++|+|||||+|+|++.+........++.|.......+.+.+..+.+. ...|... ...+...
T Consensus 3 i~l-vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~--------- 72 (196)
T cd01852 3 LVL-VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKE--------- 72 (196)
T ss_pred EEE-ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHH---------
Confidence 456 9999999999999999987665433333444444333334433333332 1111110 1111111
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC------CCeeeeeecccCCCHHHHHHH----HHHHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK------VNIIPIIAKADTISKSELQKF----KTNIMTE 253 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~------vnvIPVItKAD~Lt~~El~~~----K~~I~~~ 253 (650)
+.+.+ ......+|++||+++. ++ ++..|..++++|.+. -++|+|+|++|.+...++..+ +..++..
T Consensus 73 -i~~~~-~~~~~g~~~illVi~~-~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 73 -IVRCL-SLSAPGPHAFLLVVPL-GR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL 148 (196)
T ss_pred -HHHHH-HhcCCCCEEEEEEEEC-CC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHH
Confidence 11111 1223568999999975 34 999999999999763 489999999999986655554 3556667
Q ss_pred HHHCCCcEEeCCC
Q psy8479 254 LTSNGVHIYEFPT 266 (650)
Q Consensus 254 L~~~~I~if~f~~ 266 (650)
++..+..++.|..
T Consensus 149 ~~~c~~r~~~f~~ 161 (196)
T cd01852 149 LEKCGGRYVAFNN 161 (196)
T ss_pred HHHhCCeEEEEeC
Confidence 7777777777753
No 16
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.98 E-value=3e-09 Score=110.10 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=73.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHH------HHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKS------IVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~------Ii~yI~~qf~~yL~eE~~ 184 (650)
+|++|+|||||||+|++...... +.-.+.|..+........+..+.+. .-.+.. .-.-+..+...|+
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l----- 110 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYL----- 110 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHH-----
Confidence 99999999999999999875443 2223334444332222222222222 111110 1111111112222
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC------CCeeeeeecccCCCHHHH
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK------VNIIPIIAKADTISKSEL 243 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~------vnvIPVItKAD~Lt~~El 243 (650)
....+|++||++.-+..++...|..+++.|... .|+|+|+||+|.+.+++.
T Consensus 111 --------~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 111 --------KKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred --------hccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 234589999999888889999999999999853 399999999999977653
No 17
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.94 E-value=1.9e-08 Score=98.15 Aligned_cols=137 Identities=20% Similarity=0.307 Sum_probs=88.4
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEE----E-eeCCceeec------chhHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTY----E-LQENNVKLK------EDSFKSIVDYIDNQFE 176 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~----~-l~e~g~~L~------~~~w~~Ii~yI~~qf~ 176 (650)
+.+ +|.+|+|||||||+|++.......+..++.|..+....+ . ++-.|+... ...|..++ .
T Consensus 27 v~i-vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~-------~ 98 (196)
T PRK00454 27 IAF-AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLI-------E 98 (196)
T ss_pred EEE-EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHH-------H
Confidence 445 999999999999999997655555556666665543321 1 122232221 12232222 2
Q ss_pred HHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 177 AYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 177 ~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
.|+... ..++++++++.. ..+....+.++++++.. ..++++|++|+|.++..+.+.....+...+.
T Consensus 99 ~~~~~~------------~~~~~~~~v~d~-~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 99 EYLRTR------------ENLKGVVLLIDS-RHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred HHHHhC------------ccceEEEEEEec-CCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 233211 134566665543 35677777778888874 5689999999999999888877777888887
Q ss_pred HCCCcEEeCC
Q psy8479 256 SNGVHIYEFP 265 (650)
Q Consensus 256 ~~~I~if~f~ 265 (650)
..++.++...
T Consensus 166 ~~~~~~~~~S 175 (196)
T PRK00454 166 FGDDEVILFS 175 (196)
T ss_pred hcCCceEEEE
Confidence 7677777654
No 18
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.92 E-value=2.7e-08 Score=92.74 Aligned_cols=140 Identities=23% Similarity=0.345 Sum_probs=86.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c----hhHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E----DSFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~----~~w~~Ii~yI~~qf~~yL~e 181 (650)
.+ +|.+|+|||||+|+|++.......+..++.|..+.. +.+.. .+.+. . ..+......+......|+..
T Consensus 3 ~l-~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 3 AF-AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EE-EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 35 899999999999999975555555555555554432 22111 11111 0 01111222222222344433
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH--HCC
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT--SNG 258 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~--~~~ 258 (650)
. ..++++++.+.. .+.....+..++++|.. ..|+++|++|+|.++..+....+..+...++ ...
T Consensus 79 ~------------~~~~~~~~v~d~-~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 79 R------------ENLKGVVLLIDS-RHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEID 145 (170)
T ss_pred C------------hhhhEEEEEEEc-CcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCC
Confidence 1 234566666543 34567788889999985 5799999999999999888888887777775 345
Q ss_pred CcEEeCC
Q psy8479 259 VHIYEFP 265 (650)
Q Consensus 259 I~if~f~ 265 (650)
..+|.+.
T Consensus 146 ~~~~~~S 152 (170)
T cd01876 146 PPIILFS 152 (170)
T ss_pred CceEEEe
Confidence 5677664
No 19
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.87 E-value=3.6e-09 Score=95.56 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=66.7
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-------chhHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-------EDSFKSIVDYIDNQFEAYLQ 180 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-------~~~w~~Ii~yI~~qf~~yL~ 180 (650)
+.+ +|++|+|||||||+|++.+. ...+..++.|.......+.+....+.+. ...+..-. ..+..|++
T Consensus 2 V~i-iG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 2 VAI-IGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEE-EESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 345 89999999999999998653 2334444444444333333433333332 11111111 11122332
Q ss_pred HHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeec
Q psy8479 181 EELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAK 234 (650)
Q Consensus 181 eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItK 234 (650)
. . .++|+++|++..+ +.++..+..++++|....|++.|++|
T Consensus 76 ~-----------~-~~~d~ii~vv~~~-~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 76 Q-----------I-SKSDLIIYVVDAS-NPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp H-----------H-CTESEEEEEEETT-SHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred H-----------H-HHCCEEEEEEECC-CCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 2 1 3568999999954 46677889999999877899999998
No 20
>KOG2486|consensus
Probab=98.78 E-value=9.8e-09 Score=106.08 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=87.1
Q ss_pred CCceeecCCCCCChhhHhhhhhCcCCCCCCCC-CCCCcEEEEEEEE-------EeeCCcee---ec-chhHHHHHHHHHH
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNTSFESTPSP-HSLPSVKLKAHTY-------ELQENNVK---LK-EDSFKSIVDYIDN 173 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~-~~~~T~~I~~~~~-------~l~e~g~~---L~-~~~w~~Ii~yI~~ 173 (650)
++++| .|+||||||||||.|+..+..+..++ .+++|+.|+.+.+ ++.++|+. .. ...|..+.
T Consensus 137 pe~~~-~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t----- 210 (320)
T KOG2486|consen 137 PELAF-YGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT----- 210 (320)
T ss_pred ceeee-ecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhH-----
Confidence 68899 99999999999999999988777555 8899998876542 33342221 11 56788888
Q ss_pred HHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCH
Q psy8479 174 QFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISK 240 (650)
Q Consensus 174 qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~ 240 (650)
..||.++.++. |.|++.....++++.|...+.||++ .|+...|+||+|+...
T Consensus 211 --~~Y~leR~nLv-------------~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 --KSYLLERENLV-------------RVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred --HHHHHhhhhhh-------------eeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 68888866443 3444445557999999999999995 7899999999998644
No 21
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.78 E-value=6.1e-08 Score=102.95 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=84.6
Q ss_pred CCCccCccCCCCCCc--cc--cccc--ccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEE
Q psy8479 81 GPFSRCWVNTRTPPP--NF--LEKS--WNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYE 151 (650)
Q Consensus 81 ~~~~~~~vG~~~lp~--Q~--~rk~--~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~ 151 (650)
.+..+.++|+..+|. |- .... .+.+.--.++ +|++|+|||||||+|++...... +...+.+.........
T Consensus 4 ~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~v-s~f~s~t~~~~~~~~~ 82 (313)
T TIGR00991 4 PQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATV-SAFQSEGLRPMMVSRT 82 (313)
T ss_pred cccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeEEEEEEE
Confidence 344578999999997 31 1111 1101111222 99999999999999999875432 2212222221111112
Q ss_pred eeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC---
Q psy8479 152 LQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK--- 225 (650)
Q Consensus 152 l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~--- 225 (650)
. .|..+. .-.+..- .++.++....+.. . +....+|++||++.....++...|.++++.|...
T Consensus 83 ~--~G~~l~VIDTPGL~d~-~~~~e~~~~~ik~------~---l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~ 150 (313)
T TIGR00991 83 R--AGFTLNIIDTPGLIEG-GYINDQAVNIIKR------F---LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK 150 (313)
T ss_pred E--CCeEEEEEECCCCCch-HHHHHHHHHHHHH------H---hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh
Confidence 2 344433 2222111 2333333222211 1 2345799999998766668889999999988853
Q ss_pred ---CCeeeeeecccCCCH
Q psy8479 226 ---VNIIPIIAKADTISK 240 (650)
Q Consensus 226 ---vnvIPVItKAD~Lt~ 240 (650)
-++|.|+|++|.+.+
T Consensus 151 ~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 151 DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhhccEEEEEECCccCCC
Confidence 389999999997743
No 22
>COG1159 Era GTPase [General function prediction only]
Probab=98.77 E-value=6.3e-08 Score=101.36 Aligned_cols=137 Identities=17% Similarity=0.275 Sum_probs=83.1
Q ss_pred CCc-eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEE-EE-------EEEEEeeCCceeecchhHHHHHHHHHHHHH
Q psy8479 106 PGK-AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVK-LK-------AHTYELQENNVKLKEDSFKSIVDYIDNQFE 176 (650)
Q Consensus 106 ~g~-~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~-I~-------~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~ 176 (650)
-|| ++ |||.|+|||||+|+|.|+++.- +|..+..|.. |. ...++++..|+.-.. ..+.
T Consensus 6 sGfVaI-iGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-----------~~l~ 72 (298)
T COG1159 6 SGFVAI-IGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-----------HALG 72 (298)
T ss_pred EEEEEE-EcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-----------hHHH
Confidence 454 33 9999999999999999998653 2222221211 11 011234444433221 1223
Q ss_pred HHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHH-HHHHHHHHHHHH
Q psy8479 177 AYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSE-LQKFKTNIMTEL 254 (650)
Q Consensus 177 ~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~E-l~~~K~~I~~~L 254 (650)
.||.....- .+. -|+++||++..+ +++.+.|-.++..|.. ..|+|.+|+|.|...+.. +..+.......+
T Consensus 73 ~~m~~~a~~-----sl~--dvDlilfvvd~~-~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~ 144 (298)
T COG1159 73 ELMNKAARS-----ALK--DVDLILFVVDAD-EGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL 144 (298)
T ss_pred HHHHHHHHH-----Hhc--cCcEEEEEEecc-ccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC
Confidence 444333211 122 356888888754 7899999999999987 579999999999999988 555555444333
Q ss_pred HHCCCcEEeCC
Q psy8479 255 TSNGVHIYEFP 265 (650)
Q Consensus 255 ~~~~I~if~f~ 265 (650)
... .++...
T Consensus 145 ~f~--~ivpiS 153 (298)
T COG1159 145 PFK--EIVPIS 153 (298)
T ss_pred Ccc--eEEEee
Confidence 222 455554
No 23
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.75 E-value=3.3e-08 Score=99.62 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=83.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec--------chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK--------EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~--------~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+|++|+||||++|+|++.+..........-|.....+...+.+..+.+. ...-..++..|.. ++
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~----~l---- 77 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKR----CL---- 77 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHH----HH----
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHH----HH----
Confidence 8999999999999999998765432212222222222223333223222 1122223322211 11
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc----CC--CeeeeeecccCCCHHHHHHHHH-----HHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS----KV--NIIPIIAKADTISKSELQKFKT-----NIMT 252 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~----~v--nvIPVItKAD~Lt~~El~~~K~-----~I~~ 252 (650)
.....-+||+||+++.. +++..|..++++|.. .+ ++|.|+|.+|.+....+..+.+ .+++
T Consensus 78 -------~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 78 -------SLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQE 148 (212)
T ss_dssp -------HHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHH
T ss_pred -------HhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhH
Confidence 12234589999998865 899999998888874 22 8999999999998876554443 3566
Q ss_pred HHHHCCCcEEeCCCC
Q psy8479 253 ELTSNGVHIYEFPTD 267 (650)
Q Consensus 253 ~L~~~~I~if~f~~d 267 (650)
.++..+-.++.|...
T Consensus 149 li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 149 LIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHTTTCEEECCTT
T ss_pred HhhhcCCEEEEEecc
Confidence 677777788888754
No 24
>PRK00089 era GTPase Era; Reviewed
Probab=98.71 E-value=2.6e-07 Score=97.00 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=48.2
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC-CHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI-SKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L-t~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.+|+++|++..+. ++...+..+++.|.. .++++.|++|+|.+ ...++....+.+.+.. ....+|.+.
T Consensus 84 ~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~--~~~~i~~iS 152 (292)
T PRK00089 84 DVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELM--DFAEIVPIS 152 (292)
T ss_pred cCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC--CCCeEEEec
Confidence 3678999998764 678888888888875 67999999999999 5666666555554322 124566554
No 25
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.70 E-value=3e-09 Score=102.67 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=84.8
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---------chhHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---------EDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---------~~~w~~Ii~yI~~qf~~y 178 (650)
++| ||+.|+|||||+|+|+|.+ ...+..|+.|+......+.+....+.+. ..+...-+. ..|
T Consensus 3 ial-vG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~------~~~ 73 (156)
T PF02421_consen 3 IAL-VGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVA------RDY 73 (156)
T ss_dssp EEE-EESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHH------HHH
T ss_pred EEE-ECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHH------HHH
Confidence 567 9999999999999999987 4456778889888766666555444443 233222221 233
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSN 257 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~ 257 (650)
|. ..++++.++.+.++. + +-++.++.+|.+ ..|+|.|++|+|.....-+..-...+.+.|
T Consensus 74 l~-------------~~~~D~ii~VvDa~~--l-~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--- 134 (156)
T PF02421_consen 74 LL-------------SEKPDLIIVVVDATN--L-ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL--- 134 (156)
T ss_dssp HH-------------HTSSSEEEEEEEGGG--H-HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH---
T ss_pred Hh-------------hcCCCEEEEECCCCC--H-HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh---
Confidence 33 234667888888753 4 456777777764 679999999999876544333333444444
Q ss_pred CCcEEeCC
Q psy8479 258 GVHIYEFP 265 (650)
Q Consensus 258 ~I~if~f~ 265 (650)
+++++.+.
T Consensus 135 g~pvi~~s 142 (156)
T PF02421_consen 135 GVPVIPVS 142 (156)
T ss_dssp TS-EEEEB
T ss_pred CCCEEEEE
Confidence 66777664
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.69 E-value=2.3e-07 Score=86.22 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=65.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHH-HHHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKS-IVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~-Ii~yI~~qf~~yL~eE~~i~ 186 (650)
+|.+|+|||||||.|++..... .+..++.|.........+.+..+.+. ...+.+ +...+..++..++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~------- 74 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAI-VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI------- 74 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEe-ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH-------
Confidence 8999999999999999875322 12223333322222222222222222 112222 2221111111111
Q ss_pred hcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHH
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSEL 243 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El 243 (650)
.++|+++|.+.+ .++....+..+.+++.. ..+++.|++|+|.....+.
T Consensus 75 --------~~~d~ii~v~d~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 75 --------EEADVILFVVDG-REGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred --------HhCCEEEEEEec-cccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 125678888876 35677778888888864 5799999999999876554
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.63 E-value=5.1e-07 Score=83.82 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=42.1
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC-CHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI-SKSELQKFKTNIMT 252 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L-t~~El~~~K~~I~~ 252 (650)
.+|+++|++..+ +.....+..+++.+.. ..+++.|+||+|.. ...++......+..
T Consensus 82 ~~d~i~~v~d~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 139 (168)
T cd04163 82 DVDLVLFVVDAS-EPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE 139 (168)
T ss_pred hCCEEEEEEECC-CccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh
Confidence 357899999876 3467778888888875 48999999999998 56666665555543
No 28
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.63 E-value=4.2e-07 Score=87.24 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=48.3
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~ 258 (650)
.|+++|++..+ ++....+.+++..+.. ..+++.|++|+|.+.+.++......+++.++..+
T Consensus 86 ~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 86 SDGAILVVDAN-EGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred cCEEEEEEECC-CCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 56888888764 5667777788877764 6799999999999998787777788887777644
No 29
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.60 E-value=6.3e-07 Score=93.47 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=62.9
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec-----chhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK-----EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~-----~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ +|++|+|||||+|+|++.++.. ++..++.|.... ..+...++ .+.+. ......+-.++......++
T Consensus 4 ~l-iG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i-~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--- 77 (270)
T TIGR00436 4 AI-LGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRI-SGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--- 77 (270)
T ss_pred EE-ECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcE-EEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH---
Confidence 45 9999999999999999987532 333333332211 11111111 11111 1111122222212211111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQK 245 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~ 245 (650)
...++++|++.++. .... +..++..|.. ..|++.|++|+|...+.++..
T Consensus 78 ------------~~aDvvl~VvD~~~-~~~~-~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~ 127 (270)
T TIGR00436 78 ------------GGVDLILFVVDSDQ-WNGD-GEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLP 127 (270)
T ss_pred ------------hhCCEEEEEEECCC-CCch-HHHHHHHHHhcCCCEEEEEECeeCCCHHHHHH
Confidence 13578999998764 2222 3445566653 569999999999987665543
No 30
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.57 E-value=1.1e-07 Score=88.34 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=67.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRSLN 190 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~ 190 (650)
+|.+|+|||||||+|++..... .+..++.|..+....+.+.+..+.+. ..++.....++. .+ ...+..
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~--------~~-~~~~~~- 75 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE--------KI-GIERAR- 75 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--------HH-HHHHHH-
Confidence 9999999999999999976422 23334444444333333332222221 111111111100 00 011110
Q ss_pred ccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHH
Q psy8479 191 TYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSEL 243 (650)
Q Consensus 191 ~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El 243 (650)
..-.++|+++|++.++ ......+..+++. ....+++.|++|+|..+..+.
T Consensus 76 -~~~~~~~~~v~v~d~~-~~~~~~~~~~~~~-~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 76 -EAIEEADLVLFVIDAS-RGLDEEDLEILEL-PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred -HHHhhCCEEEEEEECC-CCCCHHHHHHHHh-hcCCCEEEEEEchhcCCcccc
Confidence 1123689999999886 4666777777766 456799999999999876544
No 31
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.57 E-value=5.7e-07 Score=89.32 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=45.0
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHH-------------HHHHHHHHHHHHHHCCC---
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSE-------------LQKFKTNIMTELTSNGV--- 259 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~E-------------l~~~K~~I~~~L~~~~I--- 259 (650)
.++++++.. .++...|..+++.|.. ..+++.|++|+|++.+++ ++.+++.+.+.+...++
T Consensus 81 ~d~~l~v~~---~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p 157 (197)
T cd04104 81 YDFFIIISS---TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP 157 (197)
T ss_pred cCEEEEEeC---CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 356666543 5789999999999885 469999999999987544 33445555555554443
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|-..
T Consensus 158 ~v~~vS 163 (197)
T cd04104 158 PVFLVS 163 (197)
T ss_pred CEEEEe
Confidence 455444
No 32
>KOG1189|consensus
Probab=98.56 E-value=8.6e-09 Score=116.69 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.5
Q ss_pred CCccccCCccccCcccCCCCCcch
Q psy8479 325 NPTIDKNLYSFFDCKYFNGLEEEE 348 (650)
Q Consensus 325 ~~ti~~~~~~~~~~~g~~~leeee 348 (650)
=|||++||.+||.+|||.|+.-+.
T Consensus 852 mKTI~dDP~~Ffe~GgW~fL~~~~ 875 (960)
T KOG1189|consen 852 MKTITDDPIAFFEDGGWSFLNVES 875 (960)
T ss_pred hhhhccCHHHHHhcCCeeeecCCC
Confidence 389999999999999999997665
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.55 E-value=2.3e-06 Score=80.20 Aligned_cols=136 Identities=15% Similarity=0.224 Sum_probs=73.6
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCC-CCCCCCcEEEEEEEEEee-CCceeec-chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTP-SPHSLPSVKLKAHTYELQ-ENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~-s~~~~~T~~I~~~~~~l~-e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
.+ +|++|+|||||||.|.+....... ...++.|+.+....+.+. +..+.+. ..+. ..|.. .+.
T Consensus 4 ~i-~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~---~~~~~----~~~------ 69 (164)
T cd04171 4 GT-AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH---EKFIK----NML------ 69 (164)
T ss_pred EE-EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh---HHHHH----HHH------
Confidence 45 999999999999999975422211 112334455444444443 2222222 1111 11110 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CC-CeeeeeecccCCCHHHHHHHHHHHHHHHHH---CCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KV-NIIPIIAKADTISKSELQKFKTNIMTELTS---NGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt~~El~~~K~~I~~~L~~---~~I~ 260 (650)
+. + ...++++|++..+ .++.....+.+..+.. .. ++|.|++|+|......+....+.+.+.++. .+..
T Consensus 70 -~~---~--~~ad~ii~V~d~~-~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 70 -AG---A--GGIDLVLLVVAAD-EGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred -hh---h--hcCCEEEEEEECC-CCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 00 1 1257889998864 3333333333333321 33 899999999998776555556666666665 3556
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 143 ~~~~S 147 (164)
T cd04171 143 IFPVS 147 (164)
T ss_pred EEEEe
Confidence 66554
No 34
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.52 E-value=1.1e-06 Score=96.83 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=74.4
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec---c--hhHHHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK---E--DSFKSIVDYIDNQFEAYLQ 180 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~---~--~~w~~Ii~yI~~qf~~yL~ 180 (650)
-+.| ||++|+|||||||+|.+.+. ..+..|..|+......+.+.+. .+.+. . ..... -..+.. .||.
T Consensus 161 dVal-VG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~-~~~Lg~---~~l~ 233 (390)
T PRK12298 161 DVGL-LGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE-GAGLGI---RFLK 233 (390)
T ss_pred cEEE-EcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc-hhhHHH---HHHH
Confidence 4455 99999999999999999764 3444444444332222222221 13332 0 00000 000111 2221
Q ss_pred HHHhhhhcccccCCceeeEEEEEEcCC---CCCCCcchHHHHHHhcc------CCCeeeeeecccCCCHHHHHHHHHHHH
Q psy8479 181 EELKIKRSLNTYHDNRIHVCLYFICPT---GHGLKSLDLVCMKKLDS------KVNIIPIIAKADTISKSELQKFKTNIM 251 (650)
Q Consensus 181 eE~~i~R~~~~~~D~RVH~cLYfI~ps---~h~Lk~lDI~~mk~L~~------~vnvIPVItKAD~Lt~~El~~~K~~I~ 251 (650)
. + .|.++++|++..+ ...+......++++|.. ..++|.|++|+|.+...++....+.+.
T Consensus 234 ~---i---------~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~ 301 (390)
T PRK12298 234 H---L---------ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV 301 (390)
T ss_pred H---H---------HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH
Confidence 1 1 1456899999765 22333333556666664 358999999999988777655444443
Q ss_pred HHHHHCCCcEEeCC
Q psy8479 252 TELTSNGVHIYEFP 265 (650)
Q Consensus 252 ~~L~~~~I~if~f~ 265 (650)
+.+. ..+.++.+.
T Consensus 302 ~~~~-~~~~Vi~IS 314 (390)
T PRK12298 302 EALG-WEGPVYLIS 314 (390)
T ss_pred HHhC-CCCCEEEEE
Confidence 3321 123566554
No 35
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.46 E-value=2.1e-06 Score=80.58 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=43.4
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCH--HHHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISK--SELQKFKTNIMTELT 255 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~--~El~~~K~~I~~~L~ 255 (650)
..|+|+|++..+ .+....+..+++.+. ...+++.|++|+|.+.. .+.....+.+++.+.
T Consensus 84 ~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 84 RADVVLLVIDAT-EGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hcCeEEEEEeCC-CCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 457999999865 455666777777765 46799999999999877 556666666666554
No 36
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.43 E-value=9.5e-07 Score=82.47 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-hhHHH--HHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-DSFKS--IVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-~~w~~--Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++... ..+..++.|.......+.+.+..+.+. + ..... .-.++.. .|+
T Consensus 2 ~G~~~~GKssl~~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~------ 70 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQ--KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVAR---DFL------ 70 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcc--cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHH---HHh------
Confidence 79999999999999998752 223334444443333344433222222 1 01110 0001100 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
.. ...|+++|++..+. . ..+...+.++. ..+++|.|++|+|...........+.+. ...+.+++..
T Consensus 71 ------~~-~~~d~vi~v~d~~~--~-~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~i 137 (158)
T cd01879 71 ------LG-EKPDLIVNVVDATN--L-ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLS---ELLGVPVVPT 137 (158)
T ss_pred ------cC-CCCcEEEEEeeCCc--c-hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHH---HhhCCCeEEE
Confidence 11 45689999998753 2 23344555554 4679999999999876544333222222 2235566654
Q ss_pred C
Q psy8479 265 P 265 (650)
Q Consensus 265 ~ 265 (650)
.
T Consensus 138 S 138 (158)
T cd01879 138 S 138 (158)
T ss_pred E
Confidence 3
No 37
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.43 E-value=1.8e-06 Score=81.87 Aligned_cols=141 Identities=13% Similarity=0.201 Sum_probs=68.7
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~ 186 (650)
+.+ +|.+|+|||||||+|++.... .+..+..|..+....+...+..+.+. ..+... ..... ..++... .+.
T Consensus 3 i~~-~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~--~~~~~~~-~~~ 74 (168)
T cd01897 3 LVI-AGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD--RPLEE--RNTIEMQ-AIT 74 (168)
T ss_pred EEE-EcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECCCcCC--ccccC--CchHHHH-HHH
Confidence 345 999999999999999997653 22233334333322222211112221 111100 00000 0011100 000
Q ss_pred hcccccCCceeeEEEEEEcCCCCCC-C-cchHHHHHHhcc---CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGHGL-K-SLDLVCMKKLDS---KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h~L-k-~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
.. ....++++|++.++.+.- . .....+++.|.. ..|+|+|++|+|.....+... +.+.....+..+
T Consensus 75 ~~-----~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 145 (168)
T cd01897 75 AL-----AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEEELEGEEV 145 (168)
T ss_pred HH-----HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhhhhccCce
Confidence 00 011368899998865432 1 112345555543 579999999999988766554 222223344556
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 146 ~~~S 149 (168)
T cd01897 146 LKIS 149 (168)
T ss_pred EEEE
Confidence 6543
No 38
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.42 E-value=1.3e-06 Score=82.93 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec---c-----hhHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK---E-----DSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~---~-----~~w~~Ii~yI~~qf~~y 178 (650)
+.+ +|++|+|||||||+|.+... .++..++.|+......+.+... .+.+. + ..+..+. ..|
T Consensus 3 v~i-vG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-------~~~ 72 (170)
T cd01898 3 VGL-VGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG-------HRF 72 (170)
T ss_pred eEE-ECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCch-------HHH
Confidence 456 99999999999999998654 2222233333221112222222 22222 1 1111121 112
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCC--CCCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGH--GLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNI 250 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h--~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I 250 (650)
+.. + .+.++|+|++..+.. .+..+ -.+++.|. ...+++.|++|+|.....+.... +
T Consensus 73 ~~~----------~--~~~d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~---~ 136 (170)
T cd01898 73 LRH----------I--ERTRLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFEL---L 136 (170)
T ss_pred HHH----------H--HhCCEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchhhHHH---H
Confidence 211 0 135689999987543 11221 12333332 25689999999998776654332 2
Q ss_pred HHHHHH-CCCcEEeCC
Q psy8479 251 MTELTS-NGVHIYEFP 265 (650)
Q Consensus 251 ~~~L~~-~~I~if~f~ 265 (650)
...+.. .++.++...
T Consensus 137 ~~~~~~~~~~~~~~~S 152 (170)
T cd01898 137 KELLKELWGKPVFPIS 152 (170)
T ss_pred HHHHhhCCCCCEEEEe
Confidence 333333 255666543
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.42 E-value=9.9e-07 Score=82.89 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ +|.+|+|||||||.|++........++.+ ..+....+.+.+..+.+. . ..+..+. ..|
T Consensus 4 ~~-vG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~---- 69 (168)
T cd04119 4 IS-MGNSGVGKSCIIKRYCEGRFVSKYLPTIG--IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR-------NEF---- 69 (168)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCeEEEEEEEECCccHHHHHHH-------HHH----
Confidence 45 99999999999999999876543222221 122222334443334433 1 1111111 111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCC----CCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHG----LKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~----Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
+ ...++++|++.++.+. +...-.++.+.+. ...+++.|++|+|.....+.. .......
T Consensus 70 ---------~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~ 136 (168)
T cd04119 70 ---------Y--KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS--EDEGRLW 136 (168)
T ss_pred ---------h--ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC--HHHHHHH
Confidence 1 1246899999876421 1122223333333 346899999999987321111 1112223
Q ss_pred HHHCCCcEEeCC
Q psy8479 254 LTSNGVHIYEFP 265 (650)
Q Consensus 254 L~~~~I~if~f~ 265 (650)
....++.+|...
T Consensus 137 ~~~~~~~~~~~S 148 (168)
T cd04119 137 AESKGFKYFETS 148 (168)
T ss_pred HHHcCCeEEEEE
Confidence 345567777665
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.42 E-value=2.9e-06 Score=94.01 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=78.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH---HHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF---KSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w---~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|++|+|||||+|+|++..... .+..++.|.......+...+..+.|. ..+. ..+. ...+.|..... .+
T Consensus 179 vG~~n~GKStlin~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~----~~~e~~~~~~~--~~ 251 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVT----EGVEKYSVIRT--LK 251 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCcee-ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchh----hHHHHHHHHHH--HH
Confidence 9999999999999999875322 23344444433222222332223332 1110 0111 11112211100 01
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
. + .+.|+|++++..+ .++...|..+++.+.. ..++|.|++|+|.+...++..+++.+...+.
T Consensus 252 ~---~--~~ad~~ilViD~~-~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 252 A---I--ERADVVLLVIDAT-EGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314 (435)
T ss_pred H---H--HHCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcc
Confidence 1 1 2357999999876 5788889988888764 6799999999999977777777777766554
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.41 E-value=2.9e-06 Score=93.69 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=80.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH---HHHHHHHHHHHHHH--HHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF---KSIVDYIDNQFEAY--LQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w---~~Ii~yI~~qf~~y--L~eE~~i 185 (650)
+|++|+|||||||+|++..... .+..++.|.......+...+..+.|. ..+. ..+.. ..+.| +.....+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~----~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTE----GVEKYSVLRTLKAI 252 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeee-cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchh----hHHHHHHHHHHHHH
Confidence 9999999999999999875332 22233333322212222222223332 1111 11110 00111 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC-CHHHHHHHHHHHHHHHHHC-CCcEE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI-SKSELQKFKTNIMTELTSN-GVHIY 262 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L-t~~El~~~K~~I~~~L~~~-~I~if 262 (650)
.+.|+|+|++..+ ++++..|..+++.+.. ..++|.|++|.|.+ ....+..+++.+...+... .+.++
T Consensus 253 ---------~~ad~~ilV~D~~-~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 253 ---------ERADVVLLVLDAT-EGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred ---------HhCCEEEEEEECC-CCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence 1358999999876 6889999988888764 67999999999998 5666667777776665442 34555
Q ss_pred eC
Q psy8479 263 EF 264 (650)
Q Consensus 263 ~f 264 (650)
..
T Consensus 323 ~~ 324 (429)
T TIGR03594 323 FI 324 (429)
T ss_pred EE
Confidence 44
No 42
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.40 E-value=7.3e-07 Score=98.32 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=85.5
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
.|+..- ||+.|+|||||+|+|.+.+ .+-++.-+|.|..+-...+.|.+..+.|. .-..+.--+.| +..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d-~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V---------E~i 285 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRD-RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV---------ERI 285 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCC-ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHH---------HHH
Confidence 577666 9999999999999999986 44467778888888777777776555554 11111111111 111
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQK 245 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~ 245 (650)
.+.|..+.+. .-+++||++..+. .+...|...+..+....+++.|++|+|..++.....
T Consensus 286 GIeRs~~~i~--~ADlvL~v~D~~~-~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~ 344 (454)
T COG0486 286 GIERAKKAIE--EADLVLFVLDASQ-PLDKEDLALIELLPKKKPIIVVLNKADLVSKIELES 344 (454)
T ss_pred HHHHHHHHHH--hCCEEEEEEeCCC-CCchhhHHHHHhcccCCCEEEEEechhcccccccch
Confidence 2222211111 2358999999874 478889888887777889999999999998876443
No 43
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.35 E-value=6.8e-06 Score=74.93 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=42.0
Q ss_pred eeEEEEEEcCCCCCCCcchHH-HHHHhccCCCeeeeeecccCCCHHHHHHHHHH-HHHHHHHCCCcEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLV-CMKKLDSKVNIIPIIAKADTISKSELQKFKTN-IMTELTSNGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~-~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~-I~~~L~~~~I~if~f~ 265 (650)
.|+++|++.++. .....+.. ++.......+++.|++|+|.+...+.....+. ........++.+|...
T Consensus 76 ~d~il~v~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 76 ADLILFVVDADL-RADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEe
Confidence 578899998763 34444444 44444567899999999999988776655431 1112222455565543
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.34 E-value=2.2e-06 Score=94.69 Aligned_cols=115 Identities=21% Similarity=0.152 Sum_probs=69.0
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH----HHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF----KSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w----~~Ii~yI~~qf~~yL~eE~ 183 (650)
.+ ||++|||||||+|.|++... +..+..++-|.......+.+.+..+.|. ...+ ..+...+..+...++.
T Consensus 3 ~i-vG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~--- 77 (429)
T TIGR03594 3 AI-VGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE--- 77 (429)
T ss_pred EE-ECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh---
Confidence 45 99999999999999999763 2233334444332222222222222222 1111 1122222222222221
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
..|+++|++... .++...|..+.++|.. ..++|.|++|+|.....
T Consensus 78 ------------~ad~vl~vvD~~-~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 78 ------------EADVILFVVDGR-EGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred ------------hCCEEEEEEeCC-CCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 247888998865 5789999999999974 67999999999987543
No 45
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.33 E-value=2.2e-06 Score=81.42 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=18.6
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.+|+|||||||.|.+.+.
T Consensus 2 iG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCc
Confidence 79999999999999999865
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.32 E-value=2.2e-06 Score=94.34 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEE-------EEEEEEEe-eCCceeecchhHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVK-------LKAHTYEL-QENNVKLKEDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~-------I~~~~~~l-~e~g~~L~~~~w~~Ii~yI~~qf~~y 178 (650)
-++. |||.|||||||+|.|+++... -++..||-|.. +....|.+ +..|+.... -.++..-|..|-..-
T Consensus 5 ~VAI-VGRPNVGKSTLFNRL~g~r~A-IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~A 80 (444)
T COG1160 5 VVAI-VGRPNVGKSTLFNRLTGRRIA-IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALIA 80 (444)
T ss_pred EEEE-ECCCCCcHHHHHHHHhCCeee-EeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHHH
Confidence 4566 999999999999999998643 33444444432 22223332 233333221 123333333442222
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC-CCeeeeeecccCCCHH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK-VNIIPIIAKADTISKS 241 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~-vnvIPVItKAD~Lt~~ 241 (650)
+.+ -+|.||++. ...|+++.|.++.++|... .++|.|++|+|....+
T Consensus 81 i~e---------------ADvilfvVD-~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 81 IEE---------------ADVILFVVD-GREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE 128 (444)
T ss_pred HHh---------------CCEEEEEEe-CCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh
Confidence 211 256677665 4578999999999999865 7999999999998443
No 47
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.31 E-value=8.8e-06 Score=80.00 Aligned_cols=150 Identities=14% Similarity=0.201 Sum_probs=82.1
Q ss_pred cCCCCCChhhHhhhhhCcCC---CCC--CCCCCCCcEEEEEEEEEee------------CCceeec---chhHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSF---EST--PSPHSLPSVKLKAHTYELQ------------ENNVKLK---EDSFKSIVDYI 171 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~---~~~--~s~~~~~T~~I~~~~~~l~------------e~g~~L~---~~~w~~Ii~yI 171 (650)
+|.+|+|||||||.|++... ... ....++.|..+....+.+. ..++.+. ......+.
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~--- 82 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLI--- 82 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHH---
Confidence 99999999999999997421 111 1122344555544444443 1122322 11111111
Q ss_pred HHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHH
Q psy8479 172 DNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNI 250 (650)
Q Consensus 172 ~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I 250 (650)
..|+.. .+ ..+++++++..+ .+++..+.+++..+. ...+++.|++|.|.++..+.....+.+
T Consensus 83 ----~~~~~~----~~--------~~d~vi~VvD~~-~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 145 (192)
T cd01889 83 ----RTIIGG----AQ--------IIDLMLLVVDAT-KGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKM 145 (192)
T ss_pred ----HHHHHH----Hh--------hCCEEEEEEECC-CCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 122211 01 145788888764 456555554444433 256999999999999877766555555
Q ss_pred HHHHH-------HCCCcEEeCCC-CchhHHHHHHHhhhc
Q psy8479 251 MTELT-------SNGVHIYEFPT-DDETMSDVNAAMTIF 281 (650)
Q Consensus 251 ~~~L~-------~~~I~if~f~~-d~~~~~~~~~~~~~~ 281 (650)
++.+. ..++.++.... ..+...++...+...
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 55433 23566776653 233455555556555
No 48
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.31 E-value=3e-06 Score=78.05 Aligned_cols=127 Identities=23% Similarity=0.360 Sum_probs=67.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||+|.|++.+.........+ ..+....+.+....+.+. ...|..+. ..++
T Consensus 6 ~G~~~~GKStl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~------ 70 (159)
T cd00154 6 IGDSGVGKTSLLLRFVDGKFDENYKSTIG--VDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT-------PSYY------ 70 (159)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCccCCcee--eeeEEEEEEECCEEEEEEEEecCChHHHHHHH-------HHHh------
Confidence 99999999999999998876554222211 122222233332223332 11122111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
. .+++++|++.++... +..+.. ++..+. ...+++.|++|+|..++.+. ....+++.+..++..
T Consensus 71 -------~--~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~ 138 (159)
T cd00154 71 -------R--GAHGAILVYDITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENGLL 138 (159)
T ss_pred -------c--CCCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcCCe
Confidence 1 257889999876422 222222 333332 24799999999999733321 223344444456667
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 139 ~~~~s 143 (159)
T cd00154 139 FFETS 143 (159)
T ss_pred EEEEe
Confidence 77664
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.29 E-value=4.3e-06 Score=94.16 Aligned_cols=140 Identities=13% Similarity=0.114 Sum_probs=78.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHH---HHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFK---SIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~---~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|++|+|||||||.|++.... .++..++.|.......+.+.+..+.|. ..... ..... .+.| ..+.....
T Consensus 217 iG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~-~e~~-~~~~~~~~--- 290 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG-HEYY-ASLRTHAA--- 290 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch-HHHH-HHHHHHHH---
Confidence 999999999999999997642 233334444322222233333223332 11100 00000 0011 00111000
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC-CCcEEeC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSN-GVHIYEF 264 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~-~I~if~f 264 (650)
+ .+.|+|++++..+ .++...|+.++..+. ...++|.|++|+|.........+++.+.+.+... ..+++..
T Consensus 291 ----i--~~ad~vilV~Da~-~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 291 ----I--EAAEVAVVLIDAS-EPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred ----H--hcCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 1 1468999999876 567888888888776 4679999999999987655555555665555432 2344433
No 50
>PRK04213 GTP-binding protein; Provisional
Probab=98.28 E-value=8e-06 Score=80.45 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH---HHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF---KSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w---~~Ii~yI~~qf~~yL~eE~ 183 (650)
+.+ +|.+|+|||||||.|++.... .+..++.|.... .+.+. ++.+. ...+ ..+-....++|...+....
T Consensus 12 i~i-~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 12 IVF-VGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPN--HYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCce--EEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 445 999999999999999987632 223333333221 12111 22221 0110 0000001122222111110
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCC----------CCCcchHHHHHHhc-cCCCeeeeeecccCCCHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGH----------GLKSLDLVCMKKLD-SKVNIIPIIAKADTISKS 241 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h----------~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~ 241 (650)
.+. =..+++|++++.++.. +..+.|.++.+.+. ..++++.|++|+|.....
T Consensus 85 --~~~-----~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 85 --EDN-----ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred --Hhh-----hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 000 1235678888877532 12334566677765 468999999999986544
No 51
>PRK15494 era GTPase Era; Provisional
Probab=98.28 E-value=1.1e-05 Score=87.36 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=62.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-c----hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-E----DSFKSIVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~----~~w~~Ii~yI~~qf~~yL~eE~~i~ 186 (650)
||++|+|||||||.|.+.++.. .+..+..|.......+.+.+..+.+. . .....+...+......
T Consensus 58 vG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~--------- 127 (339)
T PRK15494 58 IGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS--------- 127 (339)
T ss_pred EcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH---------
Confidence 9999999999999999987642 33333334332222222222222221 1 1111121111111000
Q ss_pred hcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
.+ ...++++|++.. ..++...+..+++.+.. ..++|.|++|+|...
T Consensus 128 ----~l--~~aDvil~VvD~-~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 128 ----SL--HSADLVLLIIDS-LKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred ----Hh--hhCCEEEEEEEC-CCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 01 125788888874 35777887777877764 457888999999754
No 52
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.27 E-value=6.3e-06 Score=77.60 Aligned_cols=134 Identities=15% Similarity=0.203 Sum_probs=65.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~ 191 (650)
+|.+|+|||||||+|++.++......+.+.+ +....+.+...++.+. -|..-= ...|.... +. .
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~~~~~~~~~~--i~D~~G---~~~~~~~~-------~~--~ 70 (163)
T cd01860 7 LGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVNLDDTTVKFE--IWDTAG---QERYRSLA-------PM--Y 70 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEEECCEEEEEE--EEeCCc---hHHHHHHH-------HH--H
Confidence 9999999999999999988665322222221 1112333333333333 010000 00111100 00 0
Q ss_pred cCCceeeEEEEEEcCCCCC-CCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 192 YHDNRIHVCLYFICPTGHG-LKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 192 ~~D~RVH~cLYfI~ps~h~-Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
+. ..|++++++.++... +.... +..++... ..+++++|++|+|..+..+ .....+.+.....++.++...
T Consensus 71 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 71 YR--GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ--VSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred hc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc--CCHHHHHHHHHHcCCEEEEEE
Confidence 11 247899999875321 21111 12222222 3568999999999774321 111122333445566676654
No 53
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.27 E-value=5.7e-06 Score=91.95 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=62.1
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee-CCceeec--------chhHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ-ENNVKLK--------EDSFKSIVDYIDNQFEA 177 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~-e~g~~L~--------~~~w~~Ii~yI~~qf~~ 177 (650)
.+.| ||.+|+|||||||+|.+.+. +.+..+..|+..+...+.+. +..+.+. ...|..+. ..
T Consensus 160 dVgl-VG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg-------~~ 229 (424)
T PRK12297 160 DVGL-VGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLG-------HQ 229 (424)
T ss_pred cEEE-EcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHH-------HH
Confidence 4556 99999999999999998752 22333444554433333333 2233332 11233332 12
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCCC---CCCcchHHHHHHhcc------CCCeeeeeecccC
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTGH---GLKSLDLVCMKKLDS------KVNIIPIIAKADT 237 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h---~Lk~lDI~~mk~L~~------~vnvIPVItKAD~ 237 (650)
||.. + .|.++++|+|..+.. .+......++++|.. ..++|.|++|+|.
T Consensus 230 fLrh---i---------er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 230 FLRH---I---------ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred HHHH---H---------hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 3322 1 145789999987643 222222344555542 4599999999995
No 54
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.27 E-value=1.4e-06 Score=82.52 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=56.8
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC--CCCCCCCCcEEEEEEEEEeeCCceeec---c-hhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES--TPSPHSLPSVKLKAHTYELQENNVKLK---E-DSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~--~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.| +|.+|+|||||||.|++..... .......+|+.+....+.+.+..+.+. + ..+..+. ..|+
T Consensus 3 ~~-vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~--- 71 (167)
T cd04160 3 LI-LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLW-------DKYY--- 71 (167)
T ss_pred EE-EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHH-------HHHh---
Confidence 45 9999999999999998753211 112223344444443444432112221 1 1111111 1111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
.+.|+++|++..+... +......+.+.++ ..++++.|++|+|....
T Consensus 72 ------------~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 72 ------------AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ------------CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 1356899998865422 2222222222222 36799999999997654
No 55
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.24 E-value=5.3e-06 Score=91.99 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=68.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHH----HHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKS----IVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~----Ii~yI~~qf~~yL~eE 182 (650)
+.+ ||++|||||||+|.|++.... ..+..++-|.......+.+.+..+.+. ...+.. +...+..+...++.
T Consensus 4 I~i-vG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~-- 79 (435)
T PRK00093 4 VAI-VGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIE-- 79 (435)
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH--
Confidence 456 999999999999999987642 223334444333322333332222222 111111 22223333222221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
..++++|++.++ .++...|..++++|.. ..++|.|++|+|...
T Consensus 80 -------------~ad~il~vvd~~-~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 -------------EADVILFVVDGR-AGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred -------------hCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 247899999865 5788889888888875 679999999999543
No 56
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.23 E-value=3.9e-06 Score=77.44 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.4
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
+.+ +|.+|+|||||+|.|++.++..
T Consensus 2 i~i-~G~~~~GKssl~~~l~~~~~~~ 26 (159)
T cd04159 2 ITL-VGLQNSGKTTLVNVIAGGQFSE 26 (159)
T ss_pred EEE-EcCCCCCHHHHHHHHccCCCCc
Confidence 456 9999999999999999986644
No 57
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.23 E-value=5.6e-06 Score=77.27 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=64.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+........ +..+....+.+.+..+.+. + ..|..+. ..|
T Consensus 6 ~G~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~------- 69 (162)
T cd04123 6 LGEGRVGKTSLVLRYVENKFNEKHESTT--QASFFQKTVNIGGKRIDLAIWDTAGQERYHALG-------PIY------- 69 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCcc--ceeEEEEEEEECCEEEEEEEEECCchHHHHHhh-------HHH-------
Confidence 9999999999999999876543211111 1122222233333333332 1 1122111 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchH---HHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDL---VCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI---~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+. .+|+++|++..+.. .+..+.. ++.+.+...++++.|++|+|........ .+.+.+.....+..+
T Consensus 70 ------~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~ 139 (162)
T cd04123 70 ------YR--DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS--KSEAEEYAKSVGAKH 139 (162)
T ss_pred ------hc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC--HHHHHHHHHHcCCEE
Confidence 11 24788888876432 2222211 1122222357999999999987432211 122333344456666
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 140 ~~~s 143 (162)
T cd04123 140 FETS 143 (162)
T ss_pred EEEe
Confidence 6554
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.22 E-value=6.7e-06 Score=97.11 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=75.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH----HHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF----KSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w----~~Ii~yI~~qf~~yL~eE 182 (650)
+.+ +|++|+|||||||+|++.+... ++..++.|.......+.+.+..+.|. ...+ .... ...+...+...
T Consensus 453 I~i-vG~~nvGKSSLin~l~~~~~~~-v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~---~~e~~~~~r~~ 527 (712)
T PRK09518 453 VAL-VGRPNVGKSSLLNQLTHEERAV-VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT---GAEYYSSLRTQ 527 (712)
T ss_pred EEE-ECCCCCCHHHHHHHHhCccccc-cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch---hHHHHHHHHHH
Confidence 444 9999999999999999986421 23334434333222333333333332 1110 0000 00011111111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
..+ .+.|+|++++..+ .++...|+.++..+. ..+++|.|++|.|.+.......+++.+...+
T Consensus 528 ~~i---------~~advvilViDat-~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l 590 (712)
T PRK09518 528 AAI---------ERSELALFLFDAS-QPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEF 590 (712)
T ss_pred HHh---------hcCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhc
Confidence 111 2357899998865 578888888887775 4679999999999987665555555554433
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.21 E-value=5.3e-06 Score=77.97 Aligned_cols=127 Identities=15% Similarity=0.277 Sum_probs=65.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|++|+|||||||+|++.+..... .+..+..+....+.+.+..+.+. ...+..++ ..|
T Consensus 6 iG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~------- 69 (161)
T cd01861 6 LGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI-------PSY------- 69 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH-------HHH-------
Confidence 999999999999999998765432 22222233222333332222332 11111111 011
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ...|+++|++..+. ..+..++ .++..+. ..++++.|++|+|.....+... ..+.......++.
T Consensus 70 ------~--~~~~~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~ 138 (161)
T cd01861 70 ------I--RDSSVAVVVYDITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEGEKKAKELNAM 138 (161)
T ss_pred ------h--ccCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHHHHHHHHhCCE
Confidence 1 12468888887643 2344443 2233332 2378999999999964332211 1222223344666
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 139 ~~~~S 143 (161)
T cd01861 139 FIETS 143 (161)
T ss_pred EEEEe
Confidence 66554
No 60
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.20 E-value=1.3e-05 Score=92.15 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=64.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHH------HHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKS------IVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~------Ii~yI~~qf~~yL~eE~~ 184 (650)
||++|+|||||||+|++.+...... ....|..+......+.+..+.+. .-.|.. ....|......||
T Consensus 124 VGKTGVGKSSLINSILGekvf~vss-~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L----- 197 (763)
T TIGR00993 124 LGKSGVGKSATINSIFGEVKFSTDA-FGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI----- 197 (763)
T ss_pred ECCCCCCHHHHHHHHhccccccccC-CCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH-----
Confidence 9999999999999999987655432 22234333222222222223332 111211 1111111111111
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCC------CeeeeeecccCCC
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKV------NIIPIIAKADTIS 239 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~v------nvIPVItKAD~Lt 239 (650)
....+|++||++.-........|..+++.|...+ ++|+|+|.+|.+-
T Consensus 198 --------sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 --------KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred --------hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1224799999986543334345777888876422 9999999999984
No 61
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.20 E-value=9.2e-06 Score=91.49 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=69.5
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH----HHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF----KSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w----~~Ii~yI~~qf~~yL~eE 182 (650)
+.+ ||++|||||||+|.|++.... ..+..++-|.......+.+.+..+.|. ..++ ..+...+..+...|+.
T Consensus 41 V~I-vG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~-- 116 (472)
T PRK03003 41 VAV-VGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR-- 116 (472)
T ss_pred EEE-EcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH--
Confidence 456 999999999999999987542 234455555544333333322223222 1122 1222223333222221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
..|++|+++..+ .++...|..++++|.. ..++|.|++|+|...
T Consensus 117 -------------~aD~il~VvD~~-~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 117 -------------TADAVLFVVDAT-VGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred -------------hCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 146888888865 4577778888888874 679999999999753
No 62
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=2.5e-06 Score=93.97 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=85.2
Q ss_pred ceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec--------chhHHHHHHHHHHHHHHH
Q psy8479 108 KAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK--------EDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 108 ~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~--------~~~w~~Ii~yI~~qf~~y 178 (650)
+.+. +|+.|+|||||||+|.+..-.- ++..+|-|..-....++..+..+.|. ..-...+..
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~--------- 248 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK--------- 248 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEE---------
Confidence 4455 9999999999999999975321 34444444432222333333333332 111111110
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC-CCeeeeeecccCCCH--HHHHHHHHHHHHHHH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK-VNIIPIIAKADTISK--SELQKFKTNIMTELT 255 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~-vnvIPVItKAD~Lt~--~El~~~K~~I~~~L~ 255 (650)
..+.|.+ .-..|.++|+++|..+ .++.+.|..+...+.+. -.++.|++|.|.+.. ..+..+++.|+..|.
T Consensus 249 ----~Sv~rt~--~aI~~a~vvllviDa~-~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 249 ----YSVARTL--KAIERADVVLLVIDAT-EGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred ----EeehhhH--hHHhhcCEEEEEEECC-CCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 1122221 2234567899999875 78999999999999864 499999999999987 678888888888775
Q ss_pred H
Q psy8479 256 S 256 (650)
Q Consensus 256 ~ 256 (650)
.
T Consensus 322 ~ 322 (444)
T COG1160 322 F 322 (444)
T ss_pred c
Confidence 5
No 63
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.18 E-value=4.1e-06 Score=78.73 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=58.8
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHh
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~ 184 (650)
.+ +|.+|+|||||||.|++..... . ..|..++...+.+....+.+. ...+..+ +..|+
T Consensus 3 ~i-iG~~~~GKssli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~----- 64 (158)
T cd00878 3 LI-LGLDGAGKTTILYKLKLGEVVT-T----IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL-------WKHYY----- 64 (158)
T ss_pred EE-EcCCCCCHHHHHHHHhcCCCCC-C----CCCcCcceEEEEECCEEEEEEECCCChhhHHH-------HHHHh-----
Confidence 45 8999999999999999987322 1 122222222233222112221 1111111 11111
Q ss_pred hhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHH
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKT 248 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~ 248 (650)
. ..||++|++.++.. .+....-.+.+.+. ...+++.|.+|+|...........+
T Consensus 65 --------~--~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~ 123 (158)
T cd00878 65 --------E--NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIE 123 (158)
T ss_pred --------c--cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHH
Confidence 1 24899999988643 23333222222222 3569999999999887553333333
No 64
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.16 E-value=6.5e-06 Score=77.45 Aligned_cols=129 Identities=14% Similarity=0.318 Sum_probs=65.3
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee--CCceeec------chhHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ--ENNVKLK------EDSFKSIVDYIDNQFEAYLQ 180 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~--e~g~~L~------~~~w~~Ii~yI~~qf~~yL~ 180 (650)
.+ +|.+|+|||||||.|++..+.....++. ...+....+.+. ..++.+. ...|..+. ..|
T Consensus 4 ~~-vG~~~~GKTsl~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~-- 71 (162)
T cd04106 4 IV-VGNGNVGKSSMIQRFVKGIFTKDYKKTI--GVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT-------KAY-- 71 (162)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCCCCCCCcE--EEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH-------HHH--
Confidence 45 9999999999999999876543211111 122222334444 3334443 11222221 111
Q ss_pred HHHhhhhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHh---ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 181 EELKIKRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKL---DSKVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 181 eE~~i~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L---~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
+.. .|++++++..+. ..+..+. .++..+ ...+|+|.|++|+|.....+... ..+......
T Consensus 72 -----------~~~--~~~~v~v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~~ 135 (162)
T cd04106 72 -----------YRG--AQACILVFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEAEALAKR 135 (162)
T ss_pred -----------hcC--CCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHHHHHHHH
Confidence 112 356666665432 2222221 122222 24679999999999876443221 222333344
Q ss_pred CCCcEEeCC
Q psy8479 257 NGVHIYEFP 265 (650)
Q Consensus 257 ~~I~if~f~ 265 (650)
.++++|...
T Consensus 136 ~~~~~~~~S 144 (162)
T cd04106 136 LQLPLFRTS 144 (162)
T ss_pred cCCeEEEEE
Confidence 567777665
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.15 E-value=1.1e-05 Score=95.24 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.1
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHH----HHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFK----SIVDYIDNQFEAYLQE 181 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~----~Ii~yI~~qf~~yL~e 181 (650)
-+.+ +|++|||||||+|.|++... +..+..++-|.........+.+..+.|. ..+|. .+...+..|...|+.
T Consensus 277 ~V~I-vG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~- 353 (712)
T PRK09518 277 VVAI-VGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS- 353 (712)
T ss_pred EEEE-ECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH-
Confidence 3566 99999999999999998753 2233445555433222222222222222 11111 122222333222221
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
..|++||++..+ .++.+.|..+++.|. ...++|.|++|+|...
T Consensus 354 --------------~aD~iL~VvDa~-~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 354 --------------LADAVVFVVDGQ-VGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred --------------hCCEEEEEEECC-CCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 247888888864 678899988888886 4679999999999754
No 66
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.14 E-value=6.8e-06 Score=80.34 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=66.1
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC-CCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES-TPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~-~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~e 181 (650)
.+ +|.+|+|||||||.|++..+.. ...++.+.+ +....+.+.+..+.|. . ..+..+.
T Consensus 4 ~v-vG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------------- 67 (193)
T cd04118 4 VM-LGKESVGKTSLVERYVHHRFLVGPYQNTIGAA--FVAKRMVVGERVVTLGIWDTAGSERYEAMS------------- 67 (193)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCcCCcCcccceeeE--EEEEEEEECCEEEEEEEEECCCchhhhhhh-------------
Confidence 45 9999999999999999876543 111122211 1112233433333332 1 1111111
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcch--HHHHHHhc---cCCCeeeeeecccCCCHHHH-HH-HHHHHHHHH
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLD--LVCMKKLD---SKVNIIPIIAKADTISKSEL-QK-FKTNIMTEL 254 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lD--I~~mk~L~---~~vnvIPVItKAD~Lt~~El-~~-~K~~I~~~L 254 (650)
+. .-...|+++|++..+. ...++ ..+++.+. ..+++|.|++|+|.....+. .. ....+.+..
T Consensus 68 -----~~----~~~~~d~iilv~d~~~--~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~ 136 (193)
T cd04118 68 -----RI----YYRGAKAAIVCYDLTD--SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA 136 (193)
T ss_pred -----Hh----hcCCCCEEEEEEECCC--HHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHH
Confidence 11 1123578888887543 22221 22344433 35799999999997643311 11 112233333
Q ss_pred HHCCCcEEeCC
Q psy8479 255 TSNGVHIYEFP 265 (650)
Q Consensus 255 ~~~~I~if~f~ 265 (650)
...++.+|...
T Consensus 137 ~~~~~~~~~~S 147 (193)
T cd04118 137 DEIKAQHFETS 147 (193)
T ss_pred HHcCCeEEEEe
Confidence 45567777664
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.14 E-value=1.3e-05 Score=74.73 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.6
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+|||||||.|.+..+..
T Consensus 5 ~i-iG~~~vGKTsl~~~~~~~~~~~ 28 (162)
T cd04138 5 VV-VGAGGVGKSALTIQLIQNHFVD 28 (162)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCcC
Confidence 45 9999999999999999876544
No 68
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.14 E-value=1.2e-05 Score=87.44 Aligned_cols=116 Identities=17% Similarity=0.277 Sum_probs=65.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeC-Cceeec-chhH-HHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQE-NNVKLK-EDSF-KSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e-~g~~L~-~~~w-~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
||.+|+|||||+|+|++.+.. ++..++.|.......+.+.+ ..+.|. .-++ ..+...+.+.|...+.. + +
T Consensus 195 vG~~NvGKSSLln~L~~~~~~--v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~---~-~- 267 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADVY--AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE---V-R- 267 (351)
T ss_pred ECCCCCCHHHHHHHHhCCcee--eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHH---H-H-
Confidence 999999999999999998643 22334444444444455532 222332 1111 22222233345444432 1 1
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchH----HHHHHhcc-CCCeeeeeecccCCCHHH
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDL----VCMKKLDS-KVNIIPIIAKADTISKSE 242 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI----~~mk~L~~-~vnvIPVItKAD~Lt~~E 242 (650)
..++++|++..+. .....++ .+++.+.. ..|+|.|++|+|.....+
T Consensus 268 -------~ADlil~VvD~s~-~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~ 318 (351)
T TIGR03156 268 -------EADLLLHVVDASD-PDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR 318 (351)
T ss_pred -------hCCEEEEEEECCC-CchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence 1357888887653 3333333 45666652 569999999999986544
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.13 E-value=1.3e-05 Score=75.98 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=64.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|++.........+.+. .+....+.+.+..+.+. ..+-. .|. .....|+
T Consensus 6 iG~~~~GKSsl~~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~D~~g~~---~~~-~~~~~~~--------- 70 (172)
T cd01862 6 LGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVTVDDKLVTLQIWDTAGQE---RFQ-SLGVAFY--------- 70 (172)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcCCccce--EEEEEEEEECCEEEEEEEEeCCChH---HHH-hHHHHHh---------
Confidence 999999999999999997653322222221 22222334443334332 11100 000 0001111
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcc---hHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCC-C
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSL---DLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNG-V 259 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~l---DI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~-I 259 (650)
.++++++|++..+.. .+... .-.+++.+. ..+|++.|++|+|...+... ....+...++..+ +
T Consensus 71 ------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 142 (172)
T cd01862 71 ------RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGNI 142 (172)
T ss_pred ------cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCCc
Confidence 125789999876421 11111 112333333 26799999999999842211 1112222333444 5
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 143 ~~~~~S 148 (172)
T cd01862 143 PYFETS 148 (172)
T ss_pred eEEEEE
Confidence 677654
No 70
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.12 E-value=1.9e-05 Score=85.09 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeC-Cceeec--------chhHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQE-NNVKLK--------EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e-~g~~L~--------~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
||.+|+|||||||+|.+.+.. .+..+..|+..+...+.+.+ ..+.+. ...+..+. .+ |++.
T Consensus 163 vG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg----~~---flrh- 232 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLG----HR---FLKH- 232 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHH----HH---HHHH-
Confidence 999999999999999986421 22222223222211222222 122222 11111222 12 2221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCC-Cc--chHHHHHHhcc------CCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGL-KS--LDLVCMKKLDS------KVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~L-k~--lDI~~mk~L~~------~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
+ .|.++++|++..+.... .+ .-..++++|.. ..++|.|++|+|.+...+...+.+.+.+
T Consensus 233 --i---------erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~- 300 (329)
T TIGR02729 233 --I---------ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK- 300 (329)
T ss_pred --H---------HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH-
Confidence 1 14568999998764311 11 11223444432 4589999999999887665444444432
Q ss_pred HHHCCCcEEeCC
Q psy8479 254 LTSNGVHIYEFP 265 (650)
Q Consensus 254 L~~~~I~if~f~ 265 (650)
..++.++...
T Consensus 301 --~~~~~vi~iS 310 (329)
T TIGR02729 301 --ALGKPVFPIS 310 (329)
T ss_pred --HcCCcEEEEE
Confidence 2356666554
No 71
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.12 E-value=9.3e-06 Score=76.93 Aligned_cols=111 Identities=16% Similarity=0.255 Sum_probs=58.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHH--HHHHHHHHHHHHHHHHHHhhhhcc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFK--SIVDYIDNQFEAYLQEELKIKRSL 189 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~--~Ii~yI~~qf~~yL~eE~~i~R~~ 189 (650)
+|.+|+|||||||.|++.++.....+... ......+.+....+.+. -|. ....| . .....
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~--~~D~~g~~~~-----~-------~~~~~- 67 (171)
T cd00157 6 VGDGAVGKTCLLISYTTGKFPTEYVPTVF---DNYSATVTVDGKQVNLG--LWDTAGQEEY-----D-------RLRPL- 67 (171)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcee---eeeEEEEEECCEEEEEE--EEeCCCcccc-----c-------ccchh-
Confidence 99999999999999999876332111111 11111122222222222 010 00000 0 00000
Q ss_pred cccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHH
Q psy8479 190 NTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSEL 243 (650)
Q Consensus 190 ~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El 243 (650)
.+ .+.|+++|++.++. ..+......++..+. ...|++.|++|+|.......
T Consensus 68 -~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 68 -SY--PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred -hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhh
Confidence 11 24578999998764 334444444555554 24799999999998765543
No 72
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.12 E-value=1.4e-05 Score=74.01 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=52.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+.+ +|.+|+|||||+|.|.+..... .+|..+......++-.|.++. + ...|..++. ..
T Consensus 3 v~l-iG~~~vGKSsL~~~l~~~~~~~------~~t~~~~~~~~~iDt~G~~~~---~-------~~~~~~~~~----~~- 60 (142)
T TIGR02528 3 IMF-IGSVGCGKTTLTQALQGEEILY------KKTQAVEYNDGAIDTPGEYVE---N-------RRLYSALIV----TA- 60 (142)
T ss_pred EEE-ECCCCCCHHHHHHHHcCCcccc------ccceeEEEcCeeecCchhhhh---h-------HHHHHHHHH----Hh-
Confidence 345 9999999999999999875421 123323211111222221110 0 011111111 11
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTIS 239 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt 239 (650)
...|++++++..+. +....+..++..+. .++|.|++|+|...
T Consensus 61 -------~~ad~vilv~d~~~-~~s~~~~~~~~~~~--~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 61 -------ADADVIALVQSATD-PESRFPPGFASIFV--KPVIGLVTKIDLAE 102 (142)
T ss_pred -------hcCCEEEEEecCCC-CCcCCChhHHHhcc--CCeEEEEEeeccCC
Confidence 23568888887643 22223344444443 38999999999764
No 73
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.11 E-value=2e-05 Score=88.22 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
.|+.+- ||.+|+|||||+|.|++.... .++..++.|..+....+.+.+..+.+. ........++++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a-ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~--------- 271 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA-IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERL--------- 271 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHH---------
Confidence 676666 999999999999999986532 234456666666555555543333332 11111111111110
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
.+.+....+ ...|+++|++..+. +....++ ++..+. ..+++|.|++|+|....
T Consensus 272 gi~~~~~~~--~~aD~il~V~D~s~-~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 272 GIEKSFKAI--KQADLVIYVLDASQ-PLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHHHH--hhCCEEEEEEECCC-CCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 011110011 13578999998753 3444444 556665 46799999999998643
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.09 E-value=1.9e-05 Score=75.21 Aligned_cols=104 Identities=18% Similarity=0.347 Sum_probs=56.2
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ ||.+|+||||||+.|++..+......+.+ ..+....+.+.+..+.+. ...|..+. ..|+
T Consensus 4 ~v-vG~~~vGKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--- 70 (161)
T cd04124 4 IL-LGDSAVGKSKLVERFLMDGYEPQQLSTYA--LTLYKHNAKFEGKTILVDFWDTAGQERFQTMH-------ASYY--- 70 (161)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCCCCcCCcee--eEEEEEEEEECCEEEEEEEEeCCCchhhhhhh-------HHHh---
Confidence 45 99999999999999998765433222111 122222333443334433 12222222 1111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc---cCCCeeeeeecccCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD---SKVNIIPIIAKADTI 238 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~---~~vnvIPVItKAD~L 238 (650)
. ..|++++++.++... +..+ ..++..+. ...|+|.|++|+|..
T Consensus 71 ----------~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 ----------H--KAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred ----------C--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCc
Confidence 1 246888888865321 1111 12333443 357999999999974
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.08 E-value=1.5e-05 Score=76.18 Aligned_cols=130 Identities=22% Similarity=0.242 Sum_probs=66.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
||.+|+|||||+|.|.+..+......+.+ ..+....+.+.+..+.+. ..+.. .|.. +.+.
T Consensus 10 vG~~~vGKSsLl~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~-------~~~~ 72 (168)
T cd01866 10 IGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITIDGKQIKLQIWDTAGQE--------SFRS-------ITRS 72 (168)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEECCCcH--------HHHH-------HHHH
Confidence 99999999999999998765443222222 222222333433333333 11111 1100 0010
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEe
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYE 263 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~ 263 (650)
.+ ..++++++++..+.. .+..+ ..++..+. ...++|.|.+|+|........ ...++..+...++.++.
T Consensus 73 --~~--~~~d~il~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 73 --YY--RGAAGALLVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKEHGLIFME 145 (168)
T ss_pred --Hh--ccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHHcCCEEEE
Confidence 01 135788898887531 11111 12232222 356899999999987433211 12233344556777765
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 146 ~S 147 (168)
T cd01866 146 TS 147 (168)
T ss_pred Ee
Confidence 54
No 76
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.06 E-value=2.1e-05 Score=74.29 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=61.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee---CCceeec-chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ---ENNVKLK-EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~---e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+.+ +|.+|+|||||||+|++..+... ..++.|..+....+... ...+.+. ..... .|- .....+
T Consensus 3 i~i-iG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~---~~~-~~~~~~----- 70 (168)
T cd01887 3 VTV-MGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE---AFT-NMRARG----- 70 (168)
T ss_pred EEE-EecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcH---HHH-HHHHHH-----
Confidence 345 99999999999999998765432 22233444433333332 1122222 11111 010 000000
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
+ ...|+++|++.++. +........++.+. ..++++.|++|+|...
T Consensus 71 --------~--~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 71 --------A--SLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred --------H--hhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 1 13578999998763 33444555566655 4679999999999864
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.06 E-value=1.5e-05 Score=74.80 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=64.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|++|+|||||||.|++.++.....+. .+..+....+.+.+..+.+. + ..|..+. ..|+
T Consensus 6 ~G~~~~GKTtli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~~------ 70 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKFSEQYKST--IGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT-------SSYY------ 70 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH-------HHHh------
Confidence 999999999999999988753322111 12222222333333223332 1 1111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-------cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-------SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-------~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~ 258 (650)
...+++++++.++. ...++ .+.+|+. ...+++.|++|+|.....+. ..+.+.+.....+
T Consensus 71 ---------~~~d~~ilv~d~~~--~~s~~-~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~ 136 (164)
T smart00175 71 ---------RGAVGALLVYDITN--RESFE-NLKNWLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG 136 (164)
T ss_pred ---------CCCCEEEEEEECCC--HHHHH-HHHHHHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC
Confidence 12468888887642 22222 1122222 35799999999997653221 1122333345567
Q ss_pred CcEEeCC
Q psy8479 259 VHIYEFP 265 (650)
Q Consensus 259 I~if~f~ 265 (650)
+.++...
T Consensus 137 ~~~~e~S 143 (164)
T smart00175 137 LPFFETS 143 (164)
T ss_pred CeEEEEe
Confidence 7777664
No 78
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.06 E-value=4.5e-05 Score=82.48 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=67.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee-CCceeec-------chhH-HHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ-ENNVKLK-------EDSF-KSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~-e~g~~L~-------~~~w-~~Ii~yI~~qf~~yL~eE 182 (650)
||.+|+|||||||+|.+.+.. .+..+..|+..+.-.+.+. ...+.+. .... ..+- .+ ||..
T Consensus 164 VG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg----~~---flrh- 233 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLG----HR---FLKH- 233 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHH----HH---HHHH-
Confidence 999999999999999986522 2333333443332233332 1223322 1111 1121 12 2221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcch-HHHHHHhcc------CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLD-LVCMKKLDS------KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lD-I~~mk~L~~------~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
+ .|.++++|++..+.... ..+ ..++..|.. ..++|.|++|+|.+...+... ..+...+.
T Consensus 234 --i---------e~a~vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~ 299 (335)
T PRK12299 234 --I---------ERTRLLLHLVDIEAVDP-VEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELA 299 (335)
T ss_pred --h---------hhcCEEEEEEcCCCCCC-HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHH
Confidence 1 13468999998764331 112 223444432 458999999999876554321 12222234
Q ss_pred HCCCcEEeCC
Q psy8479 256 SNGVHIYEFP 265 (650)
Q Consensus 256 ~~~I~if~f~ 265 (650)
..++++|...
T Consensus 300 ~~~~~i~~iS 309 (335)
T PRK12299 300 ALGGPVFLIS 309 (335)
T ss_pred hcCCCEEEEE
Confidence 4556777654
No 79
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.02 E-value=4.9e-05 Score=72.89 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=29.0
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
.+++++++..+ .+....++..+..+. ..+++|.|++|+|...
T Consensus 91 ad~~i~v~D~~-~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 91 CEGALLLVDAT-QGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred cCeEEEEEECC-CCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 46888888765 345555555444443 5679999999999753
No 80
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.02 E-value=4.2e-05 Score=75.59 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec-chhH-HHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK-EDSF-KSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~-~~~w-~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||+|.|++...... ..+..|.......+.+.+. .+.+. ..+. ......+...|...+.. .+
T Consensus 47 iG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~----~~- 119 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE----VA- 119 (204)
T ss_pred ECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH----Hh-
Confidence 99999999999999999764322 1122222222222223222 22222 0010 00000011112111110 01
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchH----HHHHHhc-cCCCeeeeeecccCCCHHHHH
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDL----VCMKKLD-SKVNIIPIIAKADTISKSELQ 244 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI----~~mk~L~-~~vnvIPVItKAD~Lt~~El~ 244 (650)
..++++|++..+. .....++ .+++.+. ...++++|++|+|.+......
T Consensus 120 -------~~d~ii~v~D~~~-~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~ 172 (204)
T cd01878 120 -------EADLLLHVVDASD-PDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE 172 (204)
T ss_pred -------cCCeEEEEEECCC-CChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH
Confidence 2457888887543 2222232 4455554 346999999999998876543
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.01 E-value=3.7e-05 Score=72.32 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=62.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||+|.+.+..+.......... .+ .....+.+..+.+. ...|..+. ..|+.
T Consensus 8 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~--~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~----- 72 (164)
T cd04145 8 VGGGGVGKSALTIQFIQSYFVTDYDPTIED--SY-TKQCEIDGQWAILDILDTAGQEEFSAMR-------EQYMR----- 72 (164)
T ss_pred ECCCCCcHHHHHHHHHhCCCCcccCCCccc--eE-EEEEEECCEEEEEEEEECCCCcchhHHH-------HHHHh-----
Confidence 999999999999999986543321111111 11 11223333333332 12333332 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcc---hHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSL---DLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~l---DI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ .|++++++..+.. .+..+ ...+.+... ...|+|.|++|+|.....+.. .....+.+...++.
T Consensus 73 --------~--~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~ 140 (164)
T cd04145 73 --------T--GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS--REEGQELARKLKIP 140 (164)
T ss_pred --------h--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec--HHHHHHHHHHcCCc
Confidence 1 3567777765431 12222 122222222 356999999999986543211 11233344455676
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 141 ~~~~S 145 (164)
T cd04145 141 YIETS 145 (164)
T ss_pred EEEee
Confidence 76654
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.99 E-value=3.1e-05 Score=72.89 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=64.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec--chhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK--EDSFKSIVDYIDNQFEAYLQEELKIKRSL 189 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~--~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~ 189 (650)
+|.+|+|||||||.|++...........+.+..+ ..+.+.+..+.+. .-... . .|..+. +.
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~--~-----~~~~~~-------~~- 68 (161)
T cd01863 6 IGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQ--E-----RFRTLT-------SS- 68 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCc--h-----hhhhhh-------HH-
Confidence 9999999999999999876544322222222222 2233333333333 10000 0 011110 00
Q ss_pred cccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc--cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 190 NTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD--SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 190 ~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~--~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
.+. ..|++++++..+.. .+..+. +..++... ..++++.|++|+|....... ...+.+.....+..+|.+
T Consensus 69 -~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~ 142 (161)
T cd01863 69 -YYR--GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT---REEGLKFARKHNMLFIET 142 (161)
T ss_pred -HhC--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC---HHHHHHHHHHcCCEEEEE
Confidence 011 25789999886531 222222 11222222 35689999999998733321 122333334456777766
Q ss_pred C
Q psy8479 265 P 265 (650)
Q Consensus 265 ~ 265 (650)
.
T Consensus 143 S 143 (161)
T cd01863 143 S 143 (161)
T ss_pred e
Confidence 5
No 83
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.99 E-value=3.6e-05 Score=72.84 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|++|+|||||||.|++.++..
T Consensus 9 vG~~~~GKSsli~~l~~~~~~~ 30 (165)
T cd01868 9 IGDSGVGKSNLLSRFTRNEFNL 30 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999887543
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.98 E-value=2.5e-05 Score=73.65 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=66.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c---hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E---DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~---~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|.+.+......... +..+....+.+.+..+.+. . ..|..+. ..|
T Consensus 6 ~G~~~vGKTsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-------~~~------- 69 (161)
T cd04113 6 IGSSGTGKSCLLHRFVENKFKEDSQHTI--GVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT-------RSY------- 69 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCce--eeeEEEEEEEECCEEEEEEEEECcchHHHHHhH-------HHH-------
Confidence 9999999999999999876544322222 1222222334433333333 1 1111111 011
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+. ..++++|++.++.. .+..+. +..++.+. ..+++++|++|+|.....+. ....+...+...+..+
T Consensus 70 ------~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 139 (161)
T cd04113 70 ------YR--GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENGLLF 139 (161)
T ss_pred ------hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcCCEE
Confidence 11 35788998887532 222222 12223333 46799999999998753221 1223344444556666
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
+...
T Consensus 140 ~~~S 143 (161)
T cd04113 140 LETS 143 (161)
T ss_pred EEEE
Confidence 6554
No 85
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.98 E-value=4.3e-05 Score=78.01 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=57.1
Q ss_pred ceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 195 NRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 195 ~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
...|++++++... +++.+.|.+++.++.. ..++|+|+||+|+++..++...+..+++.|+..+++-+++
T Consensus 108 ~~~D~~llVvda~-~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~ 177 (224)
T cd04165 108 YAPDYAMLVVAAN-AGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPV 177 (224)
T ss_pred cCCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccce
Confidence 3578888888754 7899999999999984 6799999999999999899999999998888766654433
No 86
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.98 E-value=3.8e-05 Score=72.90 Aligned_cols=127 Identities=21% Similarity=0.323 Sum_probs=64.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|.+.++.... .+..+..+....+.+.+..+.+. + ..+..+. ..|+
T Consensus 8 ~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~~------ 72 (166)
T cd01869 8 IGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYY------ 72 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH-------HHHh------
Confidence 999999999999999987654321 12222223323333333333332 1 1111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ..+++++++..+.. .+..+. .+++.+. ...+++.|.+|+|........ .+.........++.
T Consensus 73 -~--------~~~~ii~v~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 140 (166)
T cd01869 73 -R--------GAHGIIIVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDKRVVD--YSEAQEFADELGIP 140 (166)
T ss_pred -C--------cCCEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccccCCC--HHHHHHHHHHcCCe
Confidence 1 24788888876531 222222 1222222 357999999999975443211 12223333445677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 141 ~~~~S 145 (166)
T cd01869 141 FLETS 145 (166)
T ss_pred EEEEE
Confidence 77654
No 87
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.95 E-value=0.00017 Score=81.77 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-----hhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-----DSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-----~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
||.+|+|||||||.|.+.+. +.+..+..|+..+...+.+.+..+.+. . .....+ -.+ ||..
T Consensus 165 VG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gL----g~~---fLrh-- 233 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGL----GLD---FLRH-- 233 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHH----HHH---HHHH--
Confidence 99999999999999998643 223334455444333333333223332 0 111111 112 2221
Q ss_pred hhhhcccccCCceeeEEEEEEcCCC-----CCCCcchH---HHHHHhc-----------cCCCeeeeeecccCCCHHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTG-----HGLKSLDL---VCMKKLD-----------SKVNIIPIIAKADTISKSELQ 244 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~-----h~Lk~lDI---~~mk~L~-----------~~vnvIPVItKAD~Lt~~El~ 244 (650)
+ .|.++++|+|..+. ..+..++. ++.+.+. ...++|.|++|+|.....++.
T Consensus 234 -i---------eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~ 303 (500)
T PRK12296 234 -I---------ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA 303 (500)
T ss_pred -H---------HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH
Confidence 1 23468888888653 12222221 2222211 235999999999987554433
Q ss_pred HHHHHHHHHHHHCCCcEEeCC
Q psy8479 245 KFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 245 ~~K~~I~~~L~~~~I~if~f~ 265 (650)
..++..+...++++|...
T Consensus 304 ---e~l~~~l~~~g~~Vf~IS 321 (500)
T PRK12296 304 ---EFVRPELEARGWPVFEVS 321 (500)
T ss_pred ---HHHHHHHHHcCCeEEEEE
Confidence 233445666677888765
No 88
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.95 E-value=4.9e-05 Score=85.22 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHH-HHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQ-FEAYLQEE 182 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~q-f~~yL~eE 182 (650)
.|+.+. +|.+|+|||||+|.|++.+.. .++..++.|..+....+.+.+..+.+. .-....-...++.. +...+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~- 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA- 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH-
Confidence 565555 999999999999999987532 234455556555444455543333332 11111111111110 1111110
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKS 241 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~ 241 (650)
+ ...++++|++..+ ++....+..++.. ....++|.|++|+|.....
T Consensus 292 ---------~--~~aD~il~VvD~s-~~~s~~~~~~l~~-~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 292 ---------I--EEADLVLLVLDAS-EPLTEEDDEILEE-LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred ---------H--HhCCEEEEEecCC-CCCChhHHHHHHh-cCCCCcEEEEEhhhccccc
Confidence 1 1245788888765 3444446666655 4467999999999987643
No 89
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.93 E-value=8.6e-05 Score=67.65 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=18.3
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||+|.|++..
T Consensus 7 ~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 7 VGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999987
No 90
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.93 E-value=4.4e-05 Score=72.02 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=35.9
Q ss_pred eeeEEEEEEcCCCCC-CCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 196 RIHVCLYFICPTGHG-LKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 196 RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
+.++++|++..+... +..+ ..++..+. ..+++|.|++|+|.....+...... .......+..+|...
T Consensus 75 ~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~S 145 (164)
T cd04101 75 SPSVFILVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQA--QAFAQANQLKFFKTS 145 (164)
T ss_pred CCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHH--HHHHHHcCCeEEEEe
Confidence 457899998865321 1111 22333333 3479999999999876543322111 111233455666554
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.92 E-value=5.5e-05 Score=70.41 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.9
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||+|.|++.++.
T Consensus 5 ~G~~~~GKTsli~~l~~~~~~ 25 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGTFV 25 (160)
T ss_pred ECCCCCCHHHHHHHHHhCCCC
Confidence 999999999999999987643
No 92
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.92 E-value=2.4e-05 Score=73.51 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=55.6
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHh
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~ 184 (650)
.+ +|.+|+|||||+|.|++..+... .+ |..+....+.+. ..+.+. ...+. ....+..|+
T Consensus 3 ~i-~G~~~~GKTsl~~~~~~~~~~~~-~~----t~~~~~~~~~~~-~~~~l~i~D~~G~~~-----~~~~~~~~~----- 65 (160)
T cd04156 3 LL-LGLDSAGKSTLLYKLKHAELVTT-IP----TVGFNVEMLQLE-KHLSLTVWDVGGQEK-----MRTVWKCYL----- 65 (160)
T ss_pred EE-EcCCCCCHHHHHHHHhcCCcccc-cC----ccCcceEEEEeC-CceEEEEEECCCCHh-----HHHHHHHHh-----
Confidence 45 89999999999999999876432 12 222221222221 223332 11110 011111111
Q ss_pred hhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCC
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTI 238 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~L 238 (650)
. ..|+++|++..+.. .+...+..+.+.+. ..++++.|++|+|..
T Consensus 66 --------~--~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 66 --------E--NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred --------c--cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 1 23678888875432 24444444454443 357999999999975
No 93
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.92 E-value=7.1e-05 Score=73.71 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=29.7
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
.++|++++..+. +..+....+++.+. ..++++.|++|+|...
T Consensus 89 ~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 89 VDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred cCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 578899888764 34444445555553 5679999999999864
No 94
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.92 E-value=4.2e-05 Score=73.89 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=66.1
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ ||.+|+|||||||.+++..+...-.++.+ ..+....+.+.+..+.+. ...|..+.
T Consensus 4 ~i-vG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------------- 66 (170)
T cd04108 4 IV-VGDLSVGKTCLINRFCKDVFDKNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQERFKCIA-------------- 66 (170)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--------------
Confidence 35 99999999999999999766443222221 122223344443333333 11222111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
+. .+. ..+++++++..+.. .+..+ ..+++.+. ...++|.|.+|+|.....+..............
T Consensus 67 ----~~--~~~--~ad~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~ 137 (170)
T cd04108 67 ----ST--YYR--GAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE 137 (170)
T ss_pred ----HH--Hhc--CCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH
Confidence 11 111 24678888876432 23222 23333332 124589999999965443322222222333344
Q ss_pred CCCcEEeCC
Q psy8479 257 NGVHIYEFP 265 (650)
Q Consensus 257 ~~I~if~f~ 265 (650)
.+..+|...
T Consensus 138 ~~~~~~e~S 146 (170)
T cd04108 138 MQAEYWSVS 146 (170)
T ss_pred cCCeEEEEE
Confidence 566666554
No 95
>CHL00071 tufA elongation factor Tu
Probab=97.91 E-value=9.9e-05 Score=81.77 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=45.2
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHH-HHHHHHHHHHHHHC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSEL-QKFKTNIMTELTSN 257 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El-~~~K~~I~~~L~~~ 257 (650)
..++|++++.+. .++.+.+.+.+..+.. .++ +|.|++|.|..+..++ ..+++.+...|+..
T Consensus 98 ~~D~~ilVvda~-~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 98 QMDGAILVVSAA-DGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999865 5788888888888774 567 7789999999986664 33555666666543
No 96
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.90 E-value=4.9e-05 Score=72.85 Aligned_cols=134 Identities=14% Similarity=0.249 Sum_probs=63.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~ 191 (650)
||.+|+|||||||.|++..+..... +.....+....+.+.+..+.+. -|..-= .+.|...+. +. .
T Consensus 8 vG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~--i~Dt~G---~~~~~~~~~------~~--~ 72 (170)
T cd04115 8 IGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVEIDGERIKVQ--LWDTAG---QERFRKSMV------QH--Y 72 (170)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEEECCeEEEEE--EEeCCC---hHHHHHhhH------HH--h
Confidence 9999999999999999865433221 1111222223344444334433 110000 000100000 00 0
Q ss_pred cCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 192 YHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 192 ~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
+ ..+||+++++.++.. .+..+. .++..+. ..+|+|.|.+|+|.....++. .....+.....++.+|...
T Consensus 73 ~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~e~S 147 (170)
T cd04115 73 Y--RNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQIQVP--TDLAQRFADAHSMPLFETS 147 (170)
T ss_pred h--cCCCEEEEEEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhcCCC--HHHHHHHHHHcCCcEEEEe
Confidence 1 235788998887532 122221 1222221 357999999999976433221 1111222233456677654
No 97
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.90 E-value=0.0001 Score=85.29 Aligned_cols=134 Identities=18% Similarity=0.261 Sum_probs=80.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCC-CCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTP-SPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRSL 189 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~-s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~ 189 (650)
+|.+|+|||||||+|++......+ ....+.|..+....+.+.+..+.+. ..... +|+.. ++..
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe---~f~~~----~~~g-------- 70 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE---KFISN----AIAG-------- 70 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH---HHHHH----HHhh--------
Confidence 999999999999999986522211 1234556666544444443222222 22221 12111 1110
Q ss_pred cccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHHHHHHHHHHHHHHHC----CCcEEe
Q psy8479 190 NTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSELQKFKTNIMTELTSN----GVHIYE 263 (650)
Q Consensus 190 ~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El~~~K~~I~~~L~~~----~I~if~ 263 (650)
+ ..++++++++..+ .++++...+.+..+.. .++ +|.|+||+|....+.+...+..+++.+... ++.++.
T Consensus 71 --~--~~aD~aILVVDa~-~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~ 145 (581)
T TIGR00475 71 --G--GGIDAALLVVDAD-EGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFK 145 (581)
T ss_pred --h--ccCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEE
Confidence 1 1257888888865 4666666666666653 456 999999999998887766677777666554 456666
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 146 vS 147 (581)
T TIGR00475 146 TS 147 (581)
T ss_pred Ee
Confidence 54
No 98
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.89 E-value=0.00014 Score=72.69 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=45.7
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHHH-HHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSELQ-KFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El~-~~K~~I~~~L~~~~ 258 (650)
.++++++++.+. .++.+.+.++++.+.. .++ +|.|++|.|.+...++. ..++.|++.|...+
T Consensus 88 ~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 88 QMDGAILVVSAT-DGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 367899988865 5788888888888874 455 78999999998655543 35667777776543
No 99
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.88 E-value=0.00024 Score=70.88 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=53.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCCHHHHHHHHHHHHHHHHHC---CCcEEeCCC-Cchh
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTISKSELQKFKTNIMTELTSN---GVHIYEFPT-DDET 270 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~---~I~if~f~~-d~~~ 270 (650)
++++++++..+..+.......++..+.. . .++|.|++|.|.....++....+.+++.+... ++.++.... ..+.
T Consensus 107 ~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g 186 (203)
T cd01888 107 MDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN 186 (203)
T ss_pred CCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence 5788999987643444444555555542 3 37899999999998777766667777666543 556666542 2333
Q ss_pred HHHHHHHhhhc
Q psy8479 271 MSDVNAAMTIF 281 (650)
Q Consensus 271 ~~~~~~~~~~~ 281 (650)
..++...+...
T Consensus 187 i~~L~~~l~~~ 197 (203)
T cd01888 187 IDVLLEYIVKK 197 (203)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 100
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.86 E-value=3.5e-05 Score=91.61 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=78.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHH--HHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVD--YIDNQFEAYLQE 181 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~--yI~~qf~~yL~e 181 (650)
+.+ ||.+|+|||||+|.|.+.+. ..+..++.|+......+...+..+.+. .++...... .++++
T Consensus 6 IaL-vG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~------- 75 (772)
T PRK09554 6 IGL-IGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ------- 75 (772)
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH-------
Confidence 456 99999999999999998754 456668888766554444433333333 122221110 11111
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+.|. .+...+.+++++.++.+. +. -.+.+..++. ...|++.|++|.|...........+.+.+ ..+++
T Consensus 76 ---i~~~--~l~~~~aD~vI~VvDat~--le-r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~---~LG~p 144 (772)
T PRK09554 76 ---IACH--YILSGDADLLINVVDASN--LE-RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSA---RLGCP 144 (772)
T ss_pred ---HHHH--HHhccCCCEEEEEecCCc--ch-hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHH---HhCCC
Confidence 2222 122345788999888753 21 2344444444 46799999999998754433332233332 34667
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 145 VvpiS 149 (772)
T PRK09554 145 VIPLV 149 (772)
T ss_pred EEEEE
Confidence 76553
No 101
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.86 E-value=7.5e-05 Score=71.09 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=65.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHH--HHHHHHHHHHHHHHHHHHhhhhcc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFK--SIVDYIDNQFEAYLQEELKIKRSL 189 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~--~Ii~yI~~qf~~yL~eE~~i~R~~ 189 (650)
+|.+|+|||||||.|.+..+......+.+. .+....+.+.+..+.+. -|. ... .|.... +.
T Consensus 8 iG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~--i~Dt~G~~-----~~~~~~-------~~- 70 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKKFMADCPHTIGV--EFGTRIIEVNGQKIKLQ--IWDTAGQE-----RFRAVT-------RS- 70 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCcccce--eEEEEEEEECCEEEEEE--EEECCCcH-----HHHHHH-------HH-
Confidence 999999999999999987654432222211 22222333433333333 110 000 111110 11
Q ss_pred cccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 190 NTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 190 ~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.+. ..|+++++...+.+ .+..+. +..++.+. ...+++.|.+|+|.....+.. ...+++....+++.+|...
T Consensus 71 -~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 71 -YYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEAKQFADENGLLFLECS 145 (166)
T ss_pred -Hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHHHHHHHHcCCEEEEEE
Confidence 111 24788888887542 122221 11122222 346899999999986543221 1223334445677777654
No 102
>PLN03118 Rab family protein; Provisional
Probab=97.85 E-value=0.00012 Score=73.22 Aligned_cols=127 Identities=20% Similarity=0.301 Sum_probs=64.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
||.+|+|||||||.|++..+.. .....+ ..+....+.+.+..+.+. ...|..+. ..|+
T Consensus 20 vG~~~vGKTsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~------ 83 (211)
T PLN03118 20 IGDSGVGKSSLLVSFISSSVED-LAPTIG--VDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT-------SSYY------ 83 (211)
T ss_pred ECcCCCCHHHHHHHHHhCCCCC-cCCCce--eEEEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH------
Confidence 9999999999999999876422 122221 222222333433333333 12233222 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
| ..|++++++..+.. .+..+...+...+. ..+++|.|.+|+|.....+.. +.........+++
T Consensus 84 -~--------~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~~~~~~ 152 (211)
T PLN03118 84 -R--------NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS--REEGMALAKEHGC 152 (211)
T ss_pred -h--------cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHHcCC
Confidence 1 24788888875431 12222211222222 346899999999986433321 1222233345677
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 153 ~~~e~S 158 (211)
T PLN03118 153 LFLECS 158 (211)
T ss_pred EEEEEe
Confidence 777664
No 103
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.85 E-value=6.6e-05 Score=71.49 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|.+.++..
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~ 28 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDSFTS 28 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999877543
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.84 E-value=9.1e-05 Score=71.07 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=55.2
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ +|.+|+||||||+.|.+........+ |..+. ...+..+++.+. ...+..+. ..|+
T Consensus 3 ~i-vG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--- 65 (164)
T cd04162 3 LV-LGLDGAGKTSLLHSLSSERSLESVVP----TTGFN--SVAIPTQDAIMELLEIGGSQNLRKYW-------KRYL--- 65 (164)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCcccccc----cCCcc--eEEEeeCCeEEEEEECCCCcchhHHH-------HHHH---
Confidence 45 99999999999999998754332111 21111 122333344433 11111111 1221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc---cCCCeeeeeecccCCCH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD---SKVNIIPIIAKADTISK 240 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~ 240 (650)
+ ..|+++|++..+.+. +... ...+..+. ..++++.|.+|.|....
T Consensus 66 ----~--------~ad~ii~V~D~t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 66 ----S--------GSQGLIFVVDSADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred ----h--------hCCEEEEEEECCCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 1 247899999865432 2222 12233332 46799999999997543
No 105
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.84 E-value=8.4e-05 Score=70.55 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=55.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|....+....... .+..+....+.+.+..+.+. ..+... |.. + .+.
T Consensus 9 vG~~~~GKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~-~------~~~ 71 (165)
T cd01864 9 IGDSNVGKTCVVQRFKSGTFSERQGNT--IGVDFTMKTLEIEGKRVKLQIWDTAGQER--------FRT-I------TQS 71 (165)
T ss_pred ECCCCCCHHHHHHHHhhCCCcccCCCc--cceEEEEEEEEECCEEEEEEEEECCChHH--------HHH-H------HHH
Confidence 999999999999999876544322211 11223333344443334433 111110 100 0 000
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcc--hHHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSL--DLVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~l--DI~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
.+. ..++|++++..+.. .+..+ .+..++... ..+++|.|++|+|....
T Consensus 72 --~~~--~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 72 --YYR--SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred --Hhc--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 111 24788888876532 12221 122222322 35789999999998654
No 106
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.84 E-value=0.0001 Score=69.72 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.++...+..
T Consensus 7 ~G~~~~GKTsli~~~~~~~~~~ 28 (164)
T cd04175 7 LGSGGVGKSALTVQFVQGIFVE 28 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCCc
Confidence 9999999999999999765443
No 107
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.83 E-value=9.2e-05 Score=66.27 Aligned_cols=67 Identities=13% Similarity=0.018 Sum_probs=38.0
Q ss_pred eeEEEEEEcCCCCCCCcchHH------HHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLV------CMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~------~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.++++|++..+. .....+.. ........++++.|++|+|........... ..........+.+|...
T Consensus 69 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~s 141 (157)
T cd00882 69 ADGIILVYDVTD-RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAEQLAKELGVPYFETS 141 (157)
T ss_pred CCEEEEEEECcC-HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHHHHHhhcCCcEEEEe
Confidence 467888887653 22222222 223334578999999999998766554432 11122233456666554
No 108
>PRK11058 GTPase HflX; Provisional
Probab=97.83 E-value=5.7e-05 Score=84.22 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=61.1
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec-chhH-HHHHHHHHHHHHHHHHHHHh
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK-EDSF-KSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~-~~~w-~~Ii~yI~~qf~~yL~eE~~ 184 (650)
+.+ ||.+|+|||||+|.|++.+... +..++.|+..+...+.+.+. .+.+. .-.+ ..+-..+-+.|...+...
T Consensus 200 Val-VG~~NaGKSSLlN~Lt~~~~~v--~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~-- 274 (426)
T PRK11058 200 VSL-VGYTNAGKSTLFNRITEARVYA--ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQET-- 274 (426)
T ss_pred EEE-ECCCCCCHHHHHHHHhCCceee--ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHh--
Confidence 455 9999999999999999977542 22333333333223333322 12221 1111 111111112233322211
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCCCCcchH----HHHHHhcc-CCCeeeeeecccCCCH
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHGLKSLDL----VCMKKLDS-KVNIIPIIAKADTISK 240 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI----~~mk~L~~-~vnvIPVItKAD~Lt~ 240 (650)
+ ..+++++++..+. .....++ .+++.+.. ..++|.|++|+|.+..
T Consensus 275 --~--------~ADlIL~VvDaS~-~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 275 --R--------QATLLLHVVDAAD-VRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred --h--------cCCEEEEEEeCCC-ccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1 2356788887653 3323333 44566643 5799999999998753
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.81 E-value=8.3e-05 Score=70.51 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRSLN 190 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~ 190 (650)
+|.+|+||||||+.|.+..+........+ ..+....+.+.+..+.+. .+... ...| ......|+
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~D~~g-~~~~-~~~~~~~~----------- 77 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEIKGEKIKLQIWDTAG-QERF-RSITQSYY----------- 77 (169)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCC-cHHH-HHHHHHHh-----------
Confidence 99999999999999997654432221111 112222333433333332 11111 0000 00001111
Q ss_pred ccCCceeeEEEEEEcCCCC-CCCc--chHHHHHHhc-cCCCeeeeeecccCCCHHH
Q psy8479 191 TYHDNRIHVCLYFICPTGH-GLKS--LDLVCMKKLD-SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 191 ~~~D~RVH~cLYfI~ps~h-~Lk~--lDI~~mk~L~-~~vnvIPVItKAD~Lt~~E 242 (650)
...|+++|++..+.. .+.. ..+..++.+. ..+++|.|.+|+|.....+
T Consensus 78 ----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 78 ----RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred ----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 125688888876421 1111 1233345544 3689999999999865443
No 110
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.81 E-value=7.8e-05 Score=71.14 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.+|+|||||||.|.+.++...
T Consensus 9 vG~~~~GKSsl~~~~~~~~f~~~ 31 (167)
T cd01867 9 IGDSGVGKSCLLLRFSEDSFNPS 31 (167)
T ss_pred ECCCCCCHHHHHHHHhhCcCCcc
Confidence 99999999999999998776443
No 111
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.80 E-value=0.0002 Score=68.70 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=67.0
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEE-EeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTY-ELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~-~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
-+.+ +|++|+|||||+|.|++..... .+|..+..... .++-.|.+.....| ..++... +
T Consensus 3 ~i~~-iG~~~~GKstl~~~l~~~~~~~------~~~~~v~~~~~~~iDtpG~~~~~~~~-----------~~~~~~~--~ 62 (158)
T PRK15467 3 RIAF-VGAVGAGKTTLFNALQGNYTLA------RKTQAVEFNDKGDIDTPGEYFSHPRW-----------YHALITT--L 62 (158)
T ss_pred EEEE-ECCCCCCHHHHHHHHcCCCccC------ccceEEEECCCCcccCCccccCCHHH-----------HHHHHHH--H
Confidence 4667 9999999999999999864221 12233211100 12222221111111 1111110 0
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC--cEEe
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV--HIYE 263 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I--~if~ 263 (650)
...+++++++..+.. ...+...+++ +....+++.|++|+|.... +.. .+.+.+...++ .+|.
T Consensus 63 ---------~~ad~il~v~d~~~~-~s~~~~~~~~-~~~~~~ii~v~nK~Dl~~~-~~~----~~~~~~~~~~~~~p~~~ 126 (158)
T PRK15467 63 ---------QDVDMLIYVHGANDP-ESRLPAGLLD-IGVSKRQIAVISKTDMPDA-DVA----ATRKLLLETGFEEPIFE 126 (158)
T ss_pred ---------hcCCEEEEEEeCCCc-ccccCHHHHh-ccCCCCeEEEEEccccCcc-cHH----HHHHHHHHcCCCCCEEE
Confidence 134688888877632 2233443333 3345689999999997542 222 23344445553 5665
Q ss_pred CCC-CchhHHHHHHH
Q psy8479 264 FPT-DDETMSDVNAA 277 (650)
Q Consensus 264 f~~-d~~~~~~~~~~ 277 (650)
... +.+...++...
T Consensus 127 ~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 127 LNSHDPQSVQQLVDY 141 (158)
T ss_pred EECCCccCHHHHHHH
Confidence 542 33334444333
No 112
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.79 E-value=0.00011 Score=69.30 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+|||||||+|++..+..
T Consensus 4 ~v-~G~~~~GKTsli~~~~~~~~~~ 27 (164)
T smart00173 4 VV-LGSGGVGKSALTIQFVQGHFVD 27 (164)
T ss_pred EE-ECCCCCCHHHHHHHHHhCcCCc
Confidence 45 9999999999999999876543
No 113
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.78 E-value=7.8e-05 Score=71.89 Aligned_cols=108 Identities=22% Similarity=0.200 Sum_probs=55.1
Q ss_pred cCCCCCChhhHhhhhhCcCCC-CCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE-STPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLN 190 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~-~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~ 190 (650)
+|.+|+|||||||.+++..+. ....++.+.. +....+.+.+..+.+. -|..--. +.|. ..+..
T Consensus 10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~--~~~~~~~~~~~~~~l~--~~d~~g~------~~~~-----~~~~~- 73 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR--YAVNTVEVYGQEKYLI--LREVGED------EVAI-----LLNDA- 73 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCCCcccCCCccCcc--eEEEEEEECCeEEEEE--EEecCCc------cccc-----ccchh-
Confidence 999999999999999987765 2211111111 1112233333222332 1110000 0000 00000
Q ss_pred ccCCceeeEEEEEEcCCCCCCCcch--HHHHHHhc--cCCCeeeeeecccCCC
Q psy8479 191 TYHDNRIHVCLYFICPTGHGLKSLD--LVCMKKLD--SKVNIIPIIAKADTIS 239 (650)
Q Consensus 191 ~~~D~RVH~cLYfI~ps~h~Lk~lD--I~~mk~L~--~~vnvIPVItKAD~Lt 239 (650)
.+ ...|+++|++..+.+ ..++ ..+++.+. ..+|++.|++|+|...
T Consensus 74 ~~--~~~d~~llv~d~~~~--~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 74 EL--AACDVACLVYDSSDP--KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred hh--hcCCEEEEEEeCCCH--HHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 01 246789999986532 2222 24444443 2579999999999754
No 114
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.76 E-value=1.5e-05 Score=86.87 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=78.7
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCC----CCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFE----STPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~----~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~e 181 (650)
.+.| ||.+|||||||||+|++.... .+.|..|+.|..+. .+.+. .++.|. .-.+.. ..|+..||..
T Consensus 156 ~v~~-vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~~~l~DtPG~~~-----~~~~~~~l~~ 226 (360)
T TIGR03597 156 DVYV-VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DGHSLYDTPGIIN-----SHQMAHYLDK 226 (360)
T ss_pred eEEE-ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CCCEEEECCCCCC-----hhHhhhhcCH
Confidence 4455 999999999999999997542 24566777777664 23332 233333 111100 0122233322
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
+. ++. ..+-.+++...|.+.+ ++.+.--++..|.++. ....+...++|.+++-.....+....+.+.
T Consensus 227 ~~-l~~---~~~~~~i~~~~~~l~~-~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 227 KD-LKY---ITPKKEIKPKTYQLNP-NQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred HH-Hhh---cCCCCccCceEEEeCC-CCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 11 111 1334567888888875 4666666666666776 455778889999998776555555554433
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=97.76 E-value=0.00011 Score=72.05 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||++.+.+..+..
T Consensus 11 iG~~~~GKTsLi~~~~~~~~~~ 32 (189)
T PTZ00369 11 VGGGGVGKSALTIQFIQNHFID 32 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCCc
Confidence 9999999999999999876544
No 116
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.76 E-value=0.00014 Score=69.37 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
||.+|+|||||+|.|.+..+..
T Consensus 6 vG~~~vGKTsl~~~l~~~~~~~ 27 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEEFPE 27 (166)
T ss_pred ECCCCCCHHHHHHHHHhCcCCc
Confidence 9999999999999999876643
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.75 E-value=7e-05 Score=72.12 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
+.+ +|.+|+|||||+|.|.+..+.
T Consensus 4 v~l-~G~~g~GKTtl~~~~~~~~~~ 27 (180)
T cd04137 4 IAV-LGSRSVGKSSLTVQFVEGHFV 27 (180)
T ss_pred EEE-ECCCCCCHHHHHHHHHhCCCc
Confidence 345 999999999999999987653
No 118
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.75 E-value=8.8e-05 Score=70.62 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ ||.+|+|||||||.+++..+..
T Consensus 5 ~~-vG~~~vGKTsli~~~~~~~f~~ 28 (165)
T cd04140 5 VV-FGAGGVGKSSLVLRFVKGTFRE 28 (165)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCCC
Confidence 34 9999999999999999876543
No 119
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.75 E-value=6.4e-05 Score=72.26 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=18.3
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.+|+|||||+|.|++..+
T Consensus 20 vG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 20 LGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred ECCCCCCHHHHHHHHccCCC
Confidence 99999999999999998743
No 120
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.75 E-value=8.9e-05 Score=70.78 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=54.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|.+..+......+... .....+.+.+..+.+. + ..+..+.
T Consensus 4 ~G~~~vGKTsli~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 63 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNAFPEDYVPTVFE---NYSADVEVDGKPVELGLWDTAGQEDYDRLR----------------- 63 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcEEe---eeeEEEEECCEEEEEEEEECCCCcccchhc-----------------
Confidence 899999999999999987654322111111 1111233333223332 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt 239 (650)
.. .+. ..|+++++...+.. .+..+...++..+. ..+++|.|.+|+|...
T Consensus 64 -~~--~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 64 -PL--SYP--DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred -hh--hcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 00 111 35788888876431 23222222344443 3679999999999864
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.74 E-value=7.7e-05 Score=72.07 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-DSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|.+|+|||||+|.|.+..+... . +|+..+...+.+..-.+.+. + ..+..+ +..|+
T Consensus 21 ~G~~~~GKTsl~~~l~~~~~~~~-~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~-------- 80 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGEVVHT-S----PTIGSNVEEIVYKNIRFLMWDIGGQESLRSS-------WNTYY-------- 80 (174)
T ss_pred ECCCCCCHHHHHHHHccCCCCCc-C----CccccceEEEEECCeEEEEEECCCCHHHHHH-------HHHHh--------
Confidence 99999999999999987665432 2 22222222333322112221 1 111111 11111
Q ss_pred cccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
...|+++|++..+.. .+......+.+.+. ...|++.|++|+|...
T Consensus 81 -------~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 81 -------TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred -------hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 135789999987542 23333333333333 2479999999999753
No 122
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.74 E-value=0.00013 Score=68.53 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.9
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||+|.|....+.
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04136 7 LGSGGVGKSALTVQFVQGIFV 27 (163)
T ss_pred ECCCCCCHHHHHHHHHhCCCC
Confidence 999999999999999987654
No 123
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.74 E-value=0.00029 Score=75.15 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=77.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chh--HHHH--HHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDS--FKSI--VDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~--w~~I--i~yI~~qf~~yL~eE~~i~ 186 (650)
+|-.|||||||++.|.+.+..-.+. |-.|..|+.-.++.....+.+. .-+ =.|+ .|-|+.|=-.-|
T Consensus 174 aG~PNVGKSSlv~~lT~AkpEvA~Y--PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL------- 244 (346)
T COG1084 174 AGYPNVGKSSLVRKLTTAKPEVAPY--PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL------- 244 (346)
T ss_pred ecCCCCcHHHHHHHHhcCCCccCCC--CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH-------
Confidence 9999999999999999986433222 2333344333333222222221 000 0111 222222211111
Q ss_pred hcccccCCceeeEEEEEEcCCCCCCCcch--HHHHHHhccC--CCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEE
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGHGLKSLD--LVCMKKLDSK--VNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIY 262 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h~Lk~lD--I~~mk~L~~~--vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if 262 (650)
|. + + .|+|||+.|+.++.-.++ +.++..+... .++++|++|+|....+.+......+...-....+++.
T Consensus 245 ~h---l-~---~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 245 RH---L-A---GVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HH---h-c---CeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence 11 1 1 378999999988766665 4555666543 4899999999999888877766665444333334455
Q ss_pred eCC
Q psy8479 263 EFP 265 (650)
Q Consensus 263 ~f~ 265 (650)
.+.
T Consensus 318 ~~~ 320 (346)
T COG1084 318 ATK 320 (346)
T ss_pred eee
Confidence 444
No 124
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.74 E-value=0.00042 Score=80.69 Aligned_cols=134 Identities=13% Similarity=0.223 Sum_probs=83.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCC-CCCCCCcEEEEEEEEEeeCC-ceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTP-SPHSLPSVKLKAHTYELQEN-NVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~-s~~~~~T~~I~~~~~~l~e~-g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|..++|||||||+|.+.+....+ ....+.|+.+....+...++ .+.+. .-... +|+.. ++..
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe---~fi~~----m~~g------- 71 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE---KFLSN----MLAG------- 71 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH---HHHHH----HHHH-------
Confidence 999999999999999986532221 22345566554333333222 12222 22221 12211 1111
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHHHHHHHHHHHHHHHCC---CcEEe
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSELQKFKTNIMTELTSNG---VHIYE 263 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El~~~K~~I~~~L~~~~---I~if~ 263 (650)
+ ..++++++++.. .+++++.+.+.+..+.. .++ +|+|+||+|...++.+...+..+++.+...+ ..++.
T Consensus 72 ---~--~~~D~~lLVVda-~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 72 ---V--GGIDHALLVVAC-DDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred ---h--hcCCEEEEEEEC-CCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 1 125778888764 47888988888888764 455 5799999999988888888888888877654 45665
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 146 VS 147 (614)
T PRK10512 146 TA 147 (614)
T ss_pred Ee
Confidence 54
No 125
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.73 E-value=0.0001 Score=69.10 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.7
Q ss_pred eeecCCCCCChhhHhhhhhCcC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~ 130 (650)
.+ +|.+|+|||||||.|.+..
T Consensus 3 ~~-vG~~~~GKTsl~~~l~~~~ 23 (162)
T cd04157 3 LV-VGLDNSGKTTIINQLKPEN 23 (162)
T ss_pred EE-ECCCCCCHHHHHHHHcccC
Confidence 35 9999999999999999864
No 126
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.73 E-value=0.00013 Score=68.25 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|+...+..
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~~~ 27 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEFVE 27 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCcc
Confidence 9999999999999999866543
No 127
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.73 E-value=0.00014 Score=72.10 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|.+..+..
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~ 27 (201)
T cd04107 6 IGDLGVGKTSIIKRYVHGIFSQ 27 (201)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 9999999999999999876543
No 128
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.72 E-value=0.00017 Score=68.65 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|.+..+..
T Consensus 11 vG~~~~GKTsli~~~~~~~~~~ 32 (170)
T cd04116 11 LGDGGVGKSSLMNRYVTNKFDT 32 (170)
T ss_pred ECCCCCCHHHHHHHHHcCCCCc
Confidence 9999999999999999876544
No 129
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.71 E-value=0.00015 Score=71.89 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=63.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.....++.+ ..+....+.+.+..+.+. + ..+..+. ..|
T Consensus 12 vG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-------~~~------- 75 (199)
T cd04110 12 IGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGERVKLQIWDTAGQERFRTIT-------STY------- 75 (199)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEECCEEEEEEEEeCCCchhHHHHH-------HHH-------
Confidence 99999999999999998765432211111 122222333333223332 1 1122111 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIY 262 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if 262 (650)
+.+ .++++|++.++.. .+..+. +..++.....++++.|++|.|....... ....+.+.....++.+|
T Consensus 76 ------~~~--a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 76 ------YRG--THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMGISLF 145 (199)
T ss_pred ------hCC--CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcCCEEE
Confidence 112 3577888776532 222221 1222223345789999999997643221 11223333445567777
Q ss_pred eCC
Q psy8479 263 EFP 265 (650)
Q Consensus 263 ~f~ 265 (650)
...
T Consensus 146 e~S 148 (199)
T cd04110 146 ETS 148 (199)
T ss_pred EEE
Confidence 654
No 130
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.71 E-value=8.6e-05 Score=86.01 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 113 CETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 113 G~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
|.+|+|||||+|.|.+.+. ..+..++.|+......+.+.+..+.+. .+...... .++ ++.|.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s--~~e----------~v~~~ 66 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS--LEE----------EVARD 66 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccc--hHH----------HHHHH
Confidence 8999999999999998753 345566777766554454443333333 11221111 000 11111
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.+.....++|+++++.+. +. .++.....+. ..++++.|+||+|...........+.+. +..+++++...
T Consensus 67 --~l~~~~aDvvI~VvDat~--le-r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~---~~lg~pvv~tS 136 (591)
T TIGR00437 67 --YLLNEKPDLVVNVVDASN--LE-RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLE---ERLGVPVVPTS 136 (591)
T ss_pred --HHhhcCCCEEEEEecCCc--ch-hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHH---HHcCCCEEEEE
Confidence 011234678888888753 32 2444444443 5679999999999864433322222222 23467777654
No 131
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.71 E-value=0.00019 Score=72.22 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|||||||||.|++.++.
T Consensus 8 vG~~~vGKTsLi~~l~~~~~~ 28 (211)
T cd04111 8 IGDSTVGKSSLLKRFTEGRFA 28 (211)
T ss_pred ECCCCCCHHHHHHHHHcCCCC
Confidence 999999999999999987653
No 132
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.69 E-value=0.00016 Score=69.00 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~ 134 (650)
.| +|..++|||||||+|++..++..
T Consensus 2 ~v-~G~~ssGKSTliNaLlG~~ilp~ 26 (168)
T PF00350_consen 2 AV-VGQFSSGKSTLINALLGRPILPS 26 (168)
T ss_dssp EE-EEBTTSSHHHHHHHHHTSS-SSS
T ss_pred EE-EcCCCCCHHHHHHHHHhcccCcc
Confidence 46 89999999999999999987654
No 133
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.69 E-value=0.0001 Score=69.53 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=54.8
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
.+ +|.+|+|||||+|.|........ .+|+.++...+.. .++.+. ...... | ...+..|+
T Consensus 3 ~l-vG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~---~-~~~~~~~~------ 64 (158)
T cd04151 3 LI-LGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY--KNLKFQVWDLGGQTS---I-RPYWRCYY------ 64 (158)
T ss_pred EE-ECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE--CCEEEEEEECCCCHH---H-HHHHHHHh------
Confidence 45 99999999999999977654321 1222222222222 223322 111110 0 01111122
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
.+.++++|++..+.. .+....-.++..+. ...|++.|++|+|...
T Consensus 65 ---------~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 65 ---------SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred ---------cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 136789999986542 12222333333333 2579999999999864
No 134
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.68 E-value=0.00016 Score=71.42 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=20.3
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+|||||||.|++..+..
T Consensus 3 ~v-vG~~~vGKTsll~~~~~~~~~~ 26 (198)
T cd04147 3 VF-MGAAGVGKTALIQRFLYDTFEP 26 (198)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCCc
Confidence 45 9999999999999999876543
No 135
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.68 E-value=0.00019 Score=70.17 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.9
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||||.|.+..+.
T Consensus 23 vG~~~~GKTsli~~l~~~~~~ 43 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDRLA 43 (184)
T ss_pred ECCCCCCHHHHHHHHhcCCCc
Confidence 999999999999999987543
No 136
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.67 E-value=0.00014 Score=69.93 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=54.1
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ +|.+|+|||||+|.|.+. +.... .+|..++...+.+ .++.+. . .....+ +..|+
T Consensus 3 ~~-~G~~~~GKTsl~~~l~~~-~~~~~----~~t~g~~~~~~~~--~~~~~~i~D~~G~~~~~~~-------~~~~~--- 64 (167)
T cd04161 3 LT-VGLDNAGKTTLVSALQGE-IPKKV----APTVGFTPTKLRL--DKYEVCIFDLGGGANFRGI-------WVNYY--- 64 (167)
T ss_pred EE-ECCCCCCHHHHHHHHhCC-CCccc----cCcccceEEEEEE--CCEEEEEEECCCcHHHHHH-------HHHHH---
Confidence 35 899999999999999876 22211 1222222223333 233332 1 112221 12222
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh-c----cCCCeeeeeecccCCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL-D----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L-~----~~vnvIPVItKAD~Lt 239 (650)
+ ..|+++|++..+.. .+..... .++.+ . ..+|++.|++|+|.-.
T Consensus 65 ----~--------~a~~ii~V~D~s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 65 ----A--------EAHGLVFVVDSSDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred ----c--------CCCEEEEEEECCchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 1 24689999987643 2332222 23333 2 2569999999999743
No 137
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.65 E-value=0.00038 Score=66.53 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=68.8
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhH-HHHHHHHHHHHHHHHHHHHhh
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSF-KSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w-~~Ii~yI~~qf~~yL~eE~~i 185 (650)
-+-| ||++|+|||||+++|-+.... ..+|+.+......|+-.|-++-...| ..|+.
T Consensus 3 riml-iG~~g~GKTTL~q~L~~~~~~------~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~---------------- 59 (143)
T PF10662_consen 3 RIML-IGPSGSGKTTLAQALNGEEIR------YKKTQAIEYYDNTIDTPGEYIENPRFYHALIV---------------- 59 (143)
T ss_pred eEEE-ECCCCCCHHHHHHHHcCCCCC------cCccceeEecccEEECChhheeCHHHHHHHHH----------------
Confidence 3456 999999999999999997543 23455555444445555533332222 22221
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCC-CHHHHHHHHHHHHHHHHHCCCc-EEe
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTI-SKSELQKFKTNIMTELTSNGVH-IYE 263 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~L-t~~El~~~K~~I~~~L~~~~I~-if~ 263 (650)
...| .++++++.+.+.. ....--.|.+.+ ..+||=||||+|.. +...+. +.++.|+..|++ ||.
T Consensus 60 -----ta~d--ad~V~ll~dat~~-~~~~pP~fa~~f--~~pvIGVITK~Dl~~~~~~i~----~a~~~L~~aG~~~if~ 125 (143)
T PF10662_consen 60 -----TAQD--ADVVLLLQDATEP-RSVFPPGFASMF--NKPVIGVITKIDLPSDDANIE----RAKKWLKNAGVKEIFE 125 (143)
T ss_pred -----HHhh--CCEEEEEecCCCC-CccCCchhhccc--CCCEEEEEECccCccchhhHH----HHHHHHHHcCCCCeEE
Confidence 0112 3467788776642 222222233333 24899999999998 333333 334455666653 554
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 126 vS 127 (143)
T PF10662_consen 126 VS 127 (143)
T ss_pred EE
Confidence 43
No 138
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.65 E-value=0.0002 Score=70.33 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=56.4
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH-HHCC------CcEEeCCC-C
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL-TSNG------VHIYEFPT-D 267 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L-~~~~------I~if~f~~-d 267 (650)
.+++++++.+. .++.....+.++.+. ..+++|.||+|+|.+ ..++....+.+.+.| +..+ ++++.... .
T Consensus 94 ~D~ailvVda~-~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~ 171 (188)
T PF00009_consen 94 ADIAILVVDAN-DGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALT 171 (188)
T ss_dssp SSEEEEEEETT-TBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTT
T ss_pred cccceeeeecc-cccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCC
Confidence 47889999875 578899999999987 467999999999999 777777777777555 3432 34554432 2
Q ss_pred chhHHHHHHHhhhc
Q psy8479 268 DETMSDVNAAMTIF 281 (650)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (650)
......+.+.+...
T Consensus 172 g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 172 GDGIDELLEALVEL 185 (188)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 22344444444444
No 139
>PLN03110 Rab GTPase; Provisional
Probab=97.64 E-value=0.0002 Score=72.17 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
||.+|+||||||+.|.+..+..
T Consensus 18 vG~~~vGKStLi~~l~~~~~~~ 39 (216)
T PLN03110 18 IGDSGVGKSNILSRFTRNEFCL 39 (216)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999876543
No 140
>PRK09866 hypothetical protein; Provisional
Probab=97.64 E-value=0.00076 Score=77.82 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=56.0
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhccC---CCeeeeeecccCCCHHH--HHHHHHHHHHHHHHCCC---cEEeCCC-
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDSK---VNIIPIIAKADTISKSE--LQKFKTNIMTELTSNGV---HIYEFPT- 266 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~---vnvIPVItKAD~Lt~~E--l~~~K~~I~~~L~~~~I---~if~f~~- 266 (650)
+++++||++..+ +.+.+.|..+++.|... +|+|.||+|+|.....+ ...++..|...|...++ .||....
T Consensus 258 eADvVLFVVDat-~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAl 336 (741)
T PRK09866 258 RASAVLAVLDYT-QLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSM 336 (741)
T ss_pred hCCEEEEEEeCC-CCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCC
Confidence 357889988864 45778888888888742 59999999999976333 45566666656554343 5776653
Q ss_pred CchhHHHHHHHhhhccCCC
Q psy8479 267 DDETMSDVNAAMTIFSSIP 285 (650)
Q Consensus 267 d~~~~~~~~~~~~~~~~~P 285 (650)
.......+...+.....+|
T Consensus 337 kG~nid~LLdeI~~~~~l~ 355 (741)
T PRK09866 337 WGYLANRARHELANNGKLP 355 (741)
T ss_pred CCCCHHHHHHHHHhCCCCC
Confidence 2222333444444433344
No 141
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.63 E-value=0.00016 Score=73.23 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.4
Q ss_pred eeecCCCCCChhhHhhhhhCcCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
.+ ||.+|||||||||.|++..+.
T Consensus 4 ~l-vG~~gvGKTsLi~~~~~~~~~ 26 (221)
T cd04148 4 VM-LGSPGVGKSSLASQFTSGEYD 26 (221)
T ss_pred EE-ECCCCCcHHHHHHHHhcCCcC
Confidence 45 999999999999999876554
No 142
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.63 E-value=0.0002 Score=68.35 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||+|.|.+..+..
T Consensus 6 ~G~~~~GKTsl~~~~~~~~~~~ 27 (174)
T cd04135 6 VGDGAVGKTCLLMSYANDAFPE 27 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCC
Confidence 9999999999999999877543
No 143
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.62 E-value=0.00025 Score=71.81 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=62.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
||.+||||||||+.++...+......+.+. .+....+.+....+.+. ...+..+. ..|
T Consensus 19 vG~~gvGKTsli~~~~~~~f~~~~~~tig~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~------- 82 (219)
T PLN03071 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGV--EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGY------- 82 (219)
T ss_pred ECcCCCCHHHHHHHHhhCCCCCccCCccce--eEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH-------
Confidence 999999999999998876654332222221 12112233333334433 11222221 011
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHH---hccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKK---LDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~---L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+ ...|++++++..+.. .+..+. .+++. ....++++.|.+|+|....... ...+ +.....++.+
T Consensus 83 ------~--~~~~~~ilvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~~v~---~~~~-~~~~~~~~~~ 149 (219)
T PLN03071 83 ------Y--IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQV-TFHRKKNLQY 149 (219)
T ss_pred ------c--ccccEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhccCC---HHHH-HHHHhcCCEE
Confidence 1 124677888776532 222221 22333 3356799999999997422110 1122 2234466777
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 150 ~e~S 153 (219)
T PLN03071 150 YEIS 153 (219)
T ss_pred EEcC
Confidence 7664
No 144
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.60 E-value=0.00029 Score=68.71 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.6
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.| +|.+|+|||||||.|.+..+..
T Consensus 4 ~v-~G~~~vGKSsli~~~~~~~~~~ 27 (188)
T cd04125 4 VI-IGDYGVGKSSLLKRFTEDEFSE 27 (188)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCCC
Confidence 45 9999999999999999876643
No 145
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.60 E-value=0.00027 Score=69.38 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
||.+|+|||||+|.|.+..+.
T Consensus 6 vG~~~vGKTSli~~~~~~~~~ 26 (191)
T cd04112 6 LGDSGVGKTCLLVRFKDGAFL 26 (191)
T ss_pred ECCCCCCHHHHHHHHhcCCCC
Confidence 999999999999999987654
No 146
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.59 E-value=0.00028 Score=67.81 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|.+.++..
T Consensus 10 vG~~~vGKTsli~~~~~~~~~~ 31 (180)
T cd04127 10 LGDSGVGKTSFLYQYTDNKFNP 31 (180)
T ss_pred ECCCCCCHHHHHHHHhcCCCCc
Confidence 9999999999999999876543
No 147
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.59 E-value=0.00031 Score=67.77 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=54.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+||||||+.|....+... .+|+.+....+.. .++.+. + ..+..+. ..|
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~~~-----~~t~g~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~-------~~~------- 73 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY--KNVKFNVWDVGGQDKIRPLW-------RHY------- 73 (168)
T ss_pred ECcCCCCHHHHHHHHccCCCccc-----cCCcccceEEEEE--CCEEEEEEECCCCHHHHHHH-------HHH-------
Confidence 99999999999999986544321 1122222222222 233332 1 1111111 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhcc----CCCeeeeeecccCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLDS----KVNIIPIIAKADTI 238 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~~----~vnvIPVItKAD~L 238 (650)
+. ..|+++|++..+.+ .+......+.+.+.. .++++.|.+|+|..
T Consensus 74 ------~~--~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 74 ------YT--GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ------hc--cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 11 25689999987654 344444434344432 36999999999974
No 148
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.59 E-value=0.0002 Score=69.44 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~ 27 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGKFPE 27 (187)
T ss_pred ECCCCCCHHHHHHHHHhCcCCC
Confidence 9999999999999999876543
No 149
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.58 E-value=0.00031 Score=66.25 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||++.++...+..
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~~ 28 (163)
T cd04176 7 LGSGGVGKSALTVQFVSGTFIE 28 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 9999999999999999876654
No 150
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.57 E-value=0.0002 Score=68.68 Aligned_cols=124 Identities=15% Similarity=0.302 Sum_probs=63.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee--CCceeec------chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ--ENNVKLK------EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~--e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+|.+|+|||||||.++...+.... .+|..+......+. .+.+.+. ...+..+. ..|
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~----- 69 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR-------DGY----- 69 (166)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-------HHH-----
Confidence 999999999999999976543321 22333332233222 2223332 11111111 001
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCC-CCCcc--hHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGH-GLKSL--DLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~l--DI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ...|++++++..+.. .+..+ -+..++.....+++|.|.+|.|.... +. +....+....+++.
T Consensus 70 --------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-~~---~~~~~~~~~~~~~~ 135 (166)
T cd00877 70 --------Y--IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-KV---KAKQITFHRKKNLQ 135 (166)
T ss_pred --------h--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-cC---CHHHHHHHHHcCCE
Confidence 1 124788888876431 11111 11222233336899999999998622 21 11222333456777
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 136 ~~e~S 140 (166)
T cd00877 136 YYEIS 140 (166)
T ss_pred EEEEe
Confidence 88765
No 151
>PLN03108 Rab family protein; Provisional
Probab=97.56 E-value=0.0003 Score=70.57 Aligned_cols=127 Identities=20% Similarity=0.289 Sum_probs=62.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|.+..+......+.+ ..+....+.+.+..+.+. ...+..+. ..|
T Consensus 12 vG~~gvGKStLi~~l~~~~~~~~~~~ti~--~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~-------~~~------- 75 (210)
T PLN03108 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITIDNKPIKLQIWDTAGQESFRSIT-------RSY------- 75 (210)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-------HHH-------
Confidence 99999999999999998765432222222 122122233433333332 11111111 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+. ..+++++++..+... +..+. .++..+ ....++|.|.+|+|........ .....+.++.+++.
T Consensus 76 ------~~--~ad~~vlv~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 144 (210)
T PLN03108 76 ------YR--GAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEHGLI 144 (210)
T ss_pred ------hc--cCCEEEEEEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccccCCC--HHHHHHHHHHcCCE
Confidence 11 246788888765422 22211 222222 2357899999999975422111 11222233456677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 145 ~~e~S 149 (210)
T PLN03108 145 FMEAS 149 (210)
T ss_pred EEEEe
Confidence 77654
No 152
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.55 E-value=0.00051 Score=67.37 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+|||||||.|++..+..
T Consensus 3 ~i-vG~~~vGKTsli~~l~~~~f~~ 26 (190)
T cd04144 3 VV-LGDGGVGKTALTIQLCLNHFVE 26 (190)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCCc
Confidence 45 9999999999999999766543
No 153
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.54 E-value=0.00036 Score=66.64 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.+|+|||||||.|.+..+...
T Consensus 7 iG~~~~GKTsli~~~~~~~~~~~ 29 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNVFIES 29 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcc
Confidence 99999999999999998776543
No 154
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.54 E-value=0.0004 Score=67.84 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.2
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
+.| +|.+|+|||||||.|....+.
T Consensus 6 v~~-vG~~~~GKTsli~~~~~~~~~ 29 (183)
T cd04152 6 IVM-LGLDSAGKTTVLYRLKFNEFV 29 (183)
T ss_pred EEE-ECCCCCCHHHHHHHHhcCCcC
Confidence 445 999999999999999876554
No 155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.54 E-value=0.00035 Score=66.58 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.4
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.+|+|||||+|.|++...
T Consensus 20 ~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred EccCCCCHHHHHHHHhcCCC
Confidence 99999999999999998743
No 156
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.53 E-value=0.00028 Score=68.64 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred ceeecCCCCCChhhHhhhhhCcCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~ 131 (650)
+.+ +|.+|+|||||||.|.+...
T Consensus 22 i~i-lG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 22 ILF-LGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred EEE-ECCCCCCHHHHHHHHhcCCC
Confidence 345 99999999999999998764
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.53 E-value=0.00032 Score=66.59 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.1
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||.+|+||||||+.++...+
T Consensus 5 vG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 5 LGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred ECCCCCcHHHHHHHHHhCcc
Confidence 99999999999999987654
No 158
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.53 E-value=6.7e-05 Score=81.98 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=37.9
Q ss_pred CCCCCcchHHHHHHhcc-CCCeeeeeecccC------------CCHHH-HHHHHHHHHHHHHHCCC---cEEeCC
Q psy8479 208 GHGLKSLDLVCMKKLDS-KVNIIPIIAKADT------------ISKSE-LQKFKTNIMTELTSNGV---HIYEFP 265 (650)
Q Consensus 208 ~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~------------Lt~~E-l~~~K~~I~~~L~~~~I---~if~f~ 265 (650)
..+++..|+.+.+.+.. +-++..|-||.|. ++.++ ++..++.+.+.|++.++ +||-..
T Consensus 123 s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS 197 (376)
T PF05049_consen 123 SERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVS 197 (376)
T ss_dssp SSS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-
T ss_pred CCCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEe
Confidence 36899999999999986 5599999999995 33333 56677788888888776 577543
No 159
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.52 E-value=0.00052 Score=70.97 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCcch-HHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 200 CLYFICPTGHGLKSLD-LVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 200 cLYfI~ps~h~Lk~lD-I~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
.|++++ ...++...| +++++++.. ...+|.|+||+|.+.+.
T Consensus 166 IL~Vvd-a~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 166 ILAVTP-ANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred EEEEEE-CCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 344443 345677767 588888874 45888888888888654
No 160
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.51 E-value=0.001 Score=67.79 Aligned_cols=67 Identities=15% Similarity=0.324 Sum_probs=45.2
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHH-HHHHHHHHHHHHHH---CCCcEEeC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSE-LQKFKTNIMTELTS---NGVHIYEF 264 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~E-l~~~K~~I~~~L~~---~~I~if~f 264 (650)
.++|+++++.+ .++...|..++..+.. ..+ +|.|++|.|.+...+ +...++.+++.+.. .+.+++..
T Consensus 104 aDvVllviDa~-~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~i 176 (225)
T cd01882 104 ADLVLLLIDAS-FGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYL 176 (225)
T ss_pred cCEEEEEEecC-cCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 46888888864 6788888888888864 456 455999999985543 45556666654442 23455544
No 161
>PRK12736 elongation factor Tu; Reviewed
Probab=97.49 E-value=0.0013 Score=72.57 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCC------------CCC--CCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFE------------STP--SPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVD 169 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~------------~~~--s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~ 169 (650)
+-+++. +|..+.|||||+++|++.... ... -...+.|..+....|......+.+. ..... +
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---~ 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---D 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---H
Confidence 344444 999999999999999974211 000 0123445444322222222222222 22222 2
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHHHH-H
Q psy8479 170 YIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSELQK-F 246 (650)
Q Consensus 170 yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El~~-~ 246 (650)
|+ ..-. +. . ...|++++++..+ .++.+.+.+.+..+.. .++ +|.|++|+|..+.+++.. .
T Consensus 88 f~--------~~~~---~~---~--~~~d~~llVvd~~-~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 88 YV--------KNMI---TG---A--AQMDGAILVVAAT-DGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred HH--------HHHH---HH---H--hhCCEEEEEEECC-CCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHH
Confidence 22 1111 11 1 2468899988864 6788888888887763 566 678999999987666544 4
Q ss_pred HHHHHHHHHHCC
Q psy8479 247 KTNIMTELTSNG 258 (650)
Q Consensus 247 K~~I~~~L~~~~ 258 (650)
++.+.+.|...+
T Consensus 151 ~~~i~~~l~~~~ 162 (394)
T PRK12736 151 EMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhC
Confidence 456776666544
No 162
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.47 E-value=0.00032 Score=67.02 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
+.+ +|.+|+||||||+.|.+..+..
T Consensus 4 i~i-iG~~~~GKTsl~~~~~~~~~~~ 28 (175)
T cd01870 4 LVI-VGDGACGKTCLLIVFSKDQFPE 28 (175)
T ss_pred EEE-ECCCCCCHHHHHHHHhcCCCCC
Confidence 456 9999999999999999876543
No 163
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=97.47 E-value=1.7e-05 Score=89.02 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=21.2
Q ss_pred CccccCCccccCcccCCCCCcchhhh
Q psy8479 326 PTIDKNLYSFFDCKYFNGLEEEEEEE 351 (650)
Q Consensus 326 ~ti~~~~~~~~~~~g~~~leeeee~e 351 (650)
|+|..||.+||.+|||+|+....+++
T Consensus 905 ksi~~DPi~FfedGgW~fL~~gsddE 930 (1001)
T COG5406 905 KSIMKDPISFFEDGGWSFLMVGSDDE 930 (1001)
T ss_pred HHHhcCcHHHhhcCcceeeecCCccc
Confidence 67899999999999999986544433
No 164
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.47 E-value=0.00057 Score=66.15 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+||||||+.+.+..+.
T Consensus 8 vG~~~vGKTsL~~~~~~~~f~ 28 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHSFP 28 (172)
T ss_pred ECCCCCcHHHHHHHHHhCCCC
Confidence 999999999999999987654
No 165
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.47 E-value=0.00064 Score=68.05 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=59.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee--CCce--eec-chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ--ENNV--KLK-EDSFKSIVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~--e~g~--~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~ 186 (650)
+|.+|+|||||++.|+..+...+..+. ..+...+.+. ..++ .|. ......+ ..++..|+.
T Consensus 6 ~G~~~sGKTsL~~~l~~~~~~~t~~s~-----~~~~~~~~~~~~~~~~~~~l~D~pG~~~~----~~~~~~~~~------ 70 (203)
T cd04105 6 LGPSDSGKTALFTKLTTGKYRSTVTSI-----EPNVATFILNSEGKGKKFRLVDVPGHPKL----RDKLLETLK------ 70 (203)
T ss_pred EcCCCCCHHHHHHHHhcCCCCCccCcE-----eecceEEEeecCCCCceEEEEECCCCHHH----HHHHHHHHh------
Confidence 999999999999999987654432111 1111112221 1222 222 1111111 111122221
Q ss_pred hcccccCCceeeEEEEEEcCCCC--CCCcchHHHH----HHh---ccCCCeeeeeecccCCCHHHHHHHHHHHHH
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGH--GLKSLDLVCM----KKL---DSKVNIIPIIAKADTISKSELQKFKTNIMT 252 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h--~Lk~lDI~~m----k~L---~~~vnvIPVItKAD~Lt~~El~~~K~~I~~ 252 (650)
.. +++++|++..+.. .+... ..++ ..+ ...++++.|.+|.|..+.......++.+.+
T Consensus 71 -------~~-~~~vV~VvD~~~~~~~~~~~-~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ 136 (203)
T cd04105 71 -------NS-AKGIVFVVDSATFQKNLKDV-AEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEK 136 (203)
T ss_pred -------cc-CCEEEEEEECccchhHHHHH-HHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHH
Confidence 11 5789999987643 12211 1111 111 246899999999998875554444444433
No 166
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.46 E-value=0.00055 Score=65.70 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=54.0
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+ ||.+|+|||||||.|.+..+.. ..+|+.+....+.. .++.+. . .....+ +..|+
T Consensus 3 vl-vG~~~~GKTsl~~~l~~~~~~~-----~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~-------~~~~~--- 64 (169)
T cd04158 3 VT-LGLDGAGKTTILFKLKQDEFMQ-----PIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPL-------WKHYY--- 64 (169)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCCC-----cCCcCceeEEEEEE--CCEEEEEEECCCChhcchH-------HHHHh---
Confidence 35 9999999999999999864321 12233222222222 233332 1 111111 11121
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhcc----CCCeeeeeecccCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLDS----KVNIIPIIAKADTI 238 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~~----~vnvIPVItKAD~L 238 (650)
+ ..++++|++..+.+ .+......+...+.. ..+++.|.+|+|.-
T Consensus 65 ----~--------~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 65 ----L--------NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred ----c--------cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 1 24789999987643 244443333333322 36999999999963
No 167
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.45 E-value=0.00013 Score=65.43 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.2
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+||||||+.|++....
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--
T ss_pred ECcCCCCHHHHHHHHhcCCCc
Confidence 899999999999999998765
No 168
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.45 E-value=0.00075 Score=75.04 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=41.1
Q ss_pred eeeEEEEEEcCCCC-CCCcchHHHHHHhcc-CC-CeeeeeecccCCC--HHHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGH-GLKSLDLVCMKKLDS-KV-NIIPIIAKADTIS--KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt--~~El~~~K~~I~~~L~~~~ 258 (650)
..+++++++..+.. ++...+.+.+..+.. .+ ++|.|++|.|... ...+...++.+.+.+...+
T Consensus 107 ~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g 174 (425)
T PRK12317 107 QADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVG 174 (425)
T ss_pred cCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhC
Confidence 36789999887532 566666665555543 33 6899999999875 2334555666666665554
No 169
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.44 E-value=0.0012 Score=66.29 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=36.0
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCCH--HHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTISK--SELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt~--~El~~~K~~I~~~L~~~~ 258 (650)
..+++++++..+ .++...+......+.. . .++|.|++|.|.... .........++..+...+
T Consensus 100 ~ad~~llVvD~~-~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~ 165 (208)
T cd04166 100 TADLAILLVDAR-KGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLG 165 (208)
T ss_pred hCCEEEEEEECC-CCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcC
Confidence 357888998865 4555555444444432 2 257889999998753 223334445554444444
No 170
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.44 E-value=6.1e-05 Score=78.22 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=57.7
Q ss_pred cccccccCCCCCcccc----cccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 536 LGRGIVRSPGERKEKN----AEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 536 l~ltivdtpGfg~~~~----~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
..+++||||||++... +.... ..|..|+ +...+|++||+ +.-........|..+
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~-~~I~~~l--------------------~~~~idvIL~V-~rlD~~r~~~~d~~l 136 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKIL-SSIKRYL--------------------KKKTPDVVLYV-DRLDMYRRDYLDLPL 136 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHH-HHHHHHH--------------------hccCCCEEEEE-EcCCCCCCCHHHHHH
Confidence 4689999999998632 11111 1222333 23458999999 767777888999999
Q ss_pred HHhccCc------ceEEeeeecCCCCCHHHH
Q psy8479 612 MKKLDSK------VNIIPIIAKADTISKSEL 636 (650)
Q Consensus 612 mk~l~~~------vnviPvIaKaD~lt~~e~ 636 (650)
++.|... .|+|.|+.|+|.++++..
T Consensus 137 lk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 137 LRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 9988864 689999999999988754
No 171
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.44 E-value=0.00077 Score=70.67 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=36.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
.+++++++..+ .++......+++.+. ..++++.|++|.|..... .......+++.|..
T Consensus 95 aD~~IlVvda~-~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~~~l~~ 153 (267)
T cd04169 95 VDSAVMVIDAA-KGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIEEELGI 153 (267)
T ss_pred CCEEEEEEECC-CCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHHHHHCC
Confidence 57899999875 355554455555554 367999999999975442 22334455555543
No 172
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.44 E-value=0.00065 Score=68.21 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.8
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
||.+|+|||||||.|.+..+.
T Consensus 6 vG~~~vGKSsLi~~l~~~~~~ 26 (215)
T cd04109 6 LGDGAVGKTSLCRRFAKEGFG 26 (215)
T ss_pred ECcCCCCHHHHHHHHhcCCCC
Confidence 999999999999999987653
No 173
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.43 E-value=0.00079 Score=69.28 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=40.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSN 257 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~ 257 (650)
.++|++++..+ .++......+++.+. ..+++|.|++|.|.... ........|++.|..+
T Consensus 88 aD~~IlVvd~~-~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a-~~~~~~~~i~~~~~~~ 147 (237)
T cd04168 88 LDGAILVISAV-EGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA-DLEKVYQEIKEKLSSD 147 (237)
T ss_pred hCeEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECccccCC-CHHHHHHHHHHHHCCC
Confidence 36788888765 456665666666665 46799999999998753 2345566666666544
No 174
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.40 E-value=0.00012 Score=71.27 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCC
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~ 134 (650)
-..| +|.||||||||||+|++.....+
T Consensus 37 ~~vl-~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 37 TSVL-LGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHTSS----
T ss_pred EEEE-ECCCCCCHHHHHHHHHhhcchhh
Confidence 4456 99999999999999999865544
No 175
>KOG1191|consensus
Probab=97.40 E-value=0.00032 Score=78.01 Aligned_cols=122 Identities=21% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHH-HHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKS-IVDYIDNQFEAYLQEE 182 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~-Ii~yI~~qf~~yL~eE 182 (650)
.|++.- +|+.|||||||+|+|.+.. .+-+|+.+|-|.......+.+.+..+.|. ...|.. =.+-| ++ ....+.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~i-E~-~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGI-EA-LGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChh-HH-HhHHHHH
Confidence 677666 9999999999999999875 33466777777655444566665555554 445543 00000 01 1112222
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc---cC----------CCeeeeeecccCCCH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD---SK----------VNIIPIIAKADTISK 240 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~---~~----------vnvIPVItKAD~Lt~ 240 (650)
.++. |=|+|++.++|.- +....|+.+.+.|. .. -.+|.|++|.|..++
T Consensus 344 k~~~---------~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIE---------RADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHh---------hcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2232 4489999999854 34444555444444 22 246678888888776
No 176
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.39 E-value=0.0012 Score=64.76 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+||||||+.+++..+..
T Consensus 6 lG~~~vGKTsLi~~~~~~~f~~ 27 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEFDE 27 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCC
Confidence 9999999999999998876543
No 177
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.38 E-value=0.00081 Score=65.28 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=54.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+||||||..+....+.....+..+... ...+.+.+..+.|. ...+..+.
T Consensus 7 iG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------------- 66 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDYDRLR----------------- 66 (174)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCcCCCcceeee---EEEEEECCEEEEEEEEECCCchhhhhhh-----------------
Confidence 99999999999999987655432212111111 11233333333333 11121111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTI 238 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~L 238 (650)
+. .+ ...|+++++...+.+ .+..+...+++.+. ..+++|.|.+|+|..
T Consensus 67 -~~--~~--~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 67 -PL--SY--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred -hh--hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 10 11 245888888876532 22332222333333 357999999999974
No 178
>PRK13768 GTPase; Provisional
Probab=97.37 E-value=0.0012 Score=68.66 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=42.9
Q ss_pred eEEEEEEcCCCCCCCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNIM 251 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I~ 251 (650)
+.|++|+.+..+..++.|+.+..+|. ...|+|+|++|+|+++.+++..+++.+.
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLE 188 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh
Confidence 45666666667788899988887764 4669999999999999999877777655
No 179
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.32 E-value=0.00052 Score=65.91 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=53.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~ 191 (650)
+|.+|+|||||++.+.+..+.....++. .......+.+.+..+.+. -|..-=. .+|. .+ +.. .
T Consensus 6 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~--i~Dt~G~---~~~~-------~~-~~~-~ 68 (173)
T cd04130 6 VGDGAVGKTSLIVSYTTNGYPTEYVPTA---FDNFSVVVLVDGKPVRLQ--LCDTAGQ---DEFD-------KL-RPL-C 68 (173)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeeEEEEECCEEEEEE--EEECCCC---hhhc-------cc-ccc-c
Confidence 8999999999999998866543221111 111111223332223332 1100000 0000 00 110 1
Q ss_pred cCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCC
Q psy8479 192 YHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTIS 239 (650)
Q Consensus 192 ~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt 239 (650)
+. -.|+++++...+.+ .+..+.-.++..+. ..++++.|.+|+|...
T Consensus 69 ~~--~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 69 YP--DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cC--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 22 24788888865532 34433223333333 3579999999999754
No 180
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.32 E-value=0.00094 Score=67.05 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.4
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~L 238 (650)
.+++++++..+ ++....+..+++.+. ...+++.|++|+|.+
T Consensus 95 aD~~llVvD~~-~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 95 SDGVVLVVDVV-EGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 46888888764 455555555555554 457999999999986
No 181
>PRK12735 elongation factor Tu; Reviewed
Probab=97.32 E-value=0.0019 Score=71.35 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=41.1
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCee-eeeecccCCCHHHH-HHHHHHHHHHHHHC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNII-PIIAKADTISKSEL-QKFKTNIMTELTSN 257 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvI-PVItKAD~Lt~~El-~~~K~~I~~~L~~~ 257 (650)
.++++++++... .++...+.+.+..+.. .++.| .|++|.|.++.+++ ...+..+...|...
T Consensus 98 ~aD~~llVvda~-~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 98 QMDGAILVVSAA-DGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred cCCEEEEEEECC-CCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 467899998865 4677777777777763 56755 57999999865543 33444566555543
No 182
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.31 E-value=0.0016 Score=67.71 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=36.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
.+++++.+.++ .+.......+++.+. ...+++.|++|.|.... ........+++.+
T Consensus 88 aD~~i~Vvd~~-~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~ 144 (268)
T cd04170 88 ADAALVVVSAQ-SGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAF 144 (268)
T ss_pred CCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHh
Confidence 45778888765 355555566666665 36799999999998764 3334444455444
No 183
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.30 E-value=0.00023 Score=67.91 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=26.0
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
.| ||++|||||||||+|.+.+... .+..++.|...
T Consensus 106 ~~-~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~ 140 (157)
T cd01858 106 GF-IGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVW 140 (157)
T ss_pred EE-EeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeE
Confidence 35 9999999999999999976433 44555655544
No 184
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.28 E-value=0.00082 Score=65.78 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=54.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+||||||+.|....+... . +|...+...+.+ .++.+. + ..+..+. ..|+
T Consensus 23 vG~~~vGKTsli~~~~~~~~~~~-~----~T~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~-------~~~~------ 82 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGEVVTT-I----PTIGFNVETVEY--KNLKFTMWDVGGQDKLRPLW-------RHYY------ 82 (182)
T ss_pred EcCCCCCHHHHHHHHhcCCcccc-C----CccccceEEEEE--CCEEEEEEECCCCHhHHHHH-------HHHh------
Confidence 99999999999999976544321 1 222232223332 233333 1 1111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhcc----CCCeeeeeecccCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLDS----KVNIIPIIAKADTI 238 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~~----~vnvIPVItKAD~L 238 (650)
. ..|+++|++..+. ..+......+.+.+.. ..++|.|++|.|.-
T Consensus 83 -------~--~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 -------Q--NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred -------c--CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 1 2478999998653 2344444344444432 46999999999964
No 185
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.28 E-value=0.0015 Score=64.19 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+||||||+.|++..+..
T Consensus 4 vi-vG~~~vGKTsli~~~~~~~~~~ 27 (189)
T cd04134 4 VV-LGDGACGKTSLLNVFTRGYFPQ 27 (189)
T ss_pred EE-ECCCCCCHHHHHHHHhcCCCCC
Confidence 45 9999999999999999876543
No 186
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.26 E-value=0.0013 Score=68.01 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|..|+|||||||.+++..+..
T Consensus 6 lG~~gvGKTSLi~r~~~~~f~~ 27 (247)
T cd04143 6 LGASKVGKTAIVSRFLGGRFEE 27 (247)
T ss_pred ECcCCCCHHHHHHHHHcCCCCC
Confidence 9999999999999999876544
No 187
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.25 E-value=0.0013 Score=64.45 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=53.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+||||||+.|....+.. . .+|+.++...+.. .++.+. + ..+.++. ..|+
T Consensus 23 vG~~~~GKTsl~~~l~~~~~~~-~----~pt~g~~~~~~~~--~~~~~~i~D~~Gq~~~~~~~-------~~~~------ 82 (181)
T PLN00223 23 VGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW-------RHYF------ 82 (181)
T ss_pred ECCCCCCHHHHHHHHccCCCcc-c----cCCcceeEEEEEE--CCEEEEEEECCCCHHHHHHH-------HHHh------
Confidence 9999999999999998654432 1 2233333223332 233333 1 1122211 1221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
. ..|+++|++..+.+ .+.....++.+.+. ..++++.|.+|.|.-.
T Consensus 83 -------~--~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 83 -------Q--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred -------c--cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 1 14789999986532 23322222333333 2568999999999754
No 188
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.23 E-value=0.003 Score=66.33 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=39.8
Q ss_pred eEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
+++++++... .++...+..+++.+.. ..++|.||+|.|....+ .......+++.+..
T Consensus 89 D~ailVVDa~-~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~ 146 (270)
T cd01886 89 DGAVAVFDAV-AGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGA 146 (270)
T ss_pred CEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 4888888764 5778878888888774 67999999999987432 33344455555543
No 189
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.23 E-value=0.0013 Score=62.71 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+||||||+.+.+..+..
T Consensus 6 vG~~~~GKTsli~~~~~~~~~~ 27 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNEFHS 27 (161)
T ss_pred ECcCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999876654
No 190
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.22 E-value=0.00091 Score=66.68 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|||||||||.|.+..+..
T Consensus 6 vG~~~vGKTsLi~~~~~~~f~~ 27 (198)
T cd04142 6 LGAPGVGKTAIVRQFLAQEFPE 27 (198)
T ss_pred ECCCCCcHHHHHHHHHcCCCCc
Confidence 9999999999999999876543
No 191
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.21 E-value=0.00092 Score=63.68 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=27.7
Q ss_pred eeEEEEEEcCCCC-CCCcchHHHHHHhcc----CCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGH-GLKSLDLVCMKKLDS----KVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h-~Lk~lDI~~mk~L~~----~vnvIPVItKAD~L 238 (650)
.++++|++..+.+ .+......+.+.+.. ..+++.|++|.|..
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 4689999987642 244444334444432 36999999999974
No 192
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.21 E-value=0.0015 Score=63.96 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=19.7
Q ss_pred eeecCCCCCChhhHhhhhhCcCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
.+ +|.+||||||||+.+.+..+.
T Consensus 5 v~-vG~~~vGKTsli~~~~~~~f~ 27 (178)
T cd04131 5 VV-VGDVQCGKTALLQVFAKDCYP 27 (178)
T ss_pred EE-ECCCCCCHHHHHHHHHhCcCC
Confidence 34 999999999999999987654
No 193
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.21 E-value=0.0015 Score=66.65 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=18.8
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
||.+|+||||||+.|.+..+.
T Consensus 7 vGd~~vGKTsLi~~~~~~~f~ 27 (222)
T cd04173 7 VGDAECGKTALLQVFAKDAYP 27 (222)
T ss_pred ECCCCCCHHHHHHHHHcCCCC
Confidence 999999999999999986654
No 194
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.19 E-value=0.0015 Score=65.62 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=56.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+||||||||+.+....+...-..+. +..+....+.+.+..+.|. ...+..+. ..|+
T Consensus 6 lG~~gVGKTSli~r~~~~~f~~~~~~Ti--~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~-------~~y~------ 70 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDTFCEACKSGV--GVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT-------SAYY------ 70 (202)
T ss_pred ECcCCCCHHHHHHHHHhCCCCCcCCCcc--eeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH-------HHHh------
Confidence 9999999999999999766543211111 2233333444544334443 12222222 1121
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
. ..++++++..-+.. .+..+. +..++... ..+++|.|.+|+|....
T Consensus 71 -------~--~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 71 -------R--SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred -------c--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1 13678888775432 233322 22233332 46799999999997543
No 195
>PRK00049 elongation factor Tu; Reviewed
Probab=97.19 E-value=0.0031 Score=69.78 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=43.2
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCee-eeeecccCCCHHHHH-HHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNII-PIIAKADTISKSELQ-KFKTNIMTELTS 256 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvI-PVItKAD~Lt~~El~-~~K~~I~~~L~~ 256 (650)
..+++++++... .++.+.+.+.+..+.. .++++ .|++|.|..+..++. ..+..+...|..
T Consensus 98 ~aD~~llVVDa~-~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 98 QMDGAILVVSAA-DGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred cCCEEEEEEECC-CCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 468899999865 5788888888887774 56865 589999998755533 345566666654
No 196
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.17 E-value=0.0018 Score=66.56 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
||.+||||||||+.+.+..+..
T Consensus 19 vGd~~VGKTsLi~r~~~~~F~~ 40 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDCYPE 40 (232)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 9999999999999999876544
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.17 E-value=0.0023 Score=74.24 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=32.6
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
.|++++++..+ .++++.+.+.++.+. ..+++|.|++|+|...
T Consensus 93 aD~~IlVvD~~-~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 93 ADLAILIVDIN-EGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CCEEEEEEECC-cCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 46888888765 567777777777765 4679999999999873
No 198
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.15 E-value=0.0042 Score=68.55 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=43.4
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCee-eeeecccCCCHHHHHH-HHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNII-PIIAKADTISKSELQK-FKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvI-PVItKAD~Lt~~El~~-~K~~I~~~L~~~~ 258 (650)
.+|+++.++... .++...+.+.+..+.. .++.+ .|+||.|.++.+++.. .+..+++.|...+
T Consensus 98 ~~D~~ilVvda~-~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 98 QMDGAILVVSAT-DGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 457888888754 5777888888888764 55654 6899999998665433 4556777776654
No 199
>PLN03126 Elongation factor Tu; Provisional
Probab=97.15 E-value=0.0057 Score=69.36 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=42.5
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHH-HHHHHHHHHHHHHC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSEL-QKFKTNIMTELTSN 257 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El-~~~K~~I~~~L~~~ 257 (650)
..|+|+.++... .++.....+.+..+.. .++ +|.|++|.|..+.+++ ...+..+++.|...
T Consensus 167 ~aD~ailVVda~-~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 167 QMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 357889988765 5677777777777663 565 7889999999886553 33445666666543
No 200
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.13 E-value=0.0029 Score=74.94 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=63.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee--CCceeec---chhHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ--ENNVKLK---EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~--e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
+.+ +|..|+|||||+|+|.+..+... ..++.|+.+..+.+.+. ..++.+. ..... .|....
T Consensus 247 V~I-vGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F~~mr 312 (742)
T CHL00189 247 VTI-LGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AFSSMR 312 (742)
T ss_pred EEE-ECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HHHHHH
Confidence 344 99999999999999998765432 22333444333333332 2233333 11111 111110
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
. |. + ...+++++++..+ .++++..++.++.+. ..+|+|.|++|+|...
T Consensus 313 ~---rg---~--~~aDiaILVVDA~-dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 313 S---RG---A--NVTDIAILIIAAD-DGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred H---HH---H--HHCCEEEEEEECc-CCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 0 11 0 1246777777654 566777777777776 4679999999999875
No 201
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.13 E-value=0.00076 Score=70.52 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCcchHHHHHHhccC---CCeeeeeecccCCCH
Q psy8479 199 VCLYFICPTGHGLKSLDLVCMKKLDSK---VNIIPIIAKADTISK 240 (650)
Q Consensus 199 ~cLYfI~ps~h~Lk~lDI~~mk~L~~~---vnvIPVItKAD~Lt~ 240 (650)
++|.+|+. +-+-...|..+++.+... -.+|.|++.+|..-+
T Consensus 120 LvL~l~~~-~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 120 LVLWLIKA-DDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred EEEEeccC-CCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 56666654 445556788888887743 389999999998755
No 202
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.13 E-value=0.0016 Score=77.75 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=65.7
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+.+ +|.+|+|||||||.|.+..+... ..++.|..+..+.+.+.+..+.+. ...|..+..
T Consensus 293 V~I-mGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~-------------- 355 (787)
T PRK05306 293 VTI-MGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRA-------------- 355 (787)
T ss_pred EEE-ECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHH--------------
Confidence 344 99999999999999998766432 223445555444444433222222 222322220
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
|.. ...|++++++..+ .++.+...+.++.+. ..+++|.|++|+|+..
T Consensus 356 ---rga-----~~aDiaILVVdAd-dGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 356 ---RGA-----QVTDIVVLVVAAD-DGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred ---hhh-----hhCCEEEEEEECC-CCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 110 1246788888654 567777777777765 4689999999999864
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.12 E-value=0.0029 Score=70.40 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=38.8
Q ss_pred eeEEEEEEcCCCCC--CCcchHH---HHHHhccCCCeeeeeecccCC--CHHHHHHHHHHHHHHHHHCCC
Q psy8479 197 IHVCLYFICPTGHG--LKSLDLV---CMKKLDSKVNIIPIIAKADTI--SKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 197 VH~cLYfI~ps~h~--Lk~lDI~---~mk~L~~~vnvIPVItKAD~L--t~~El~~~K~~I~~~L~~~~I 259 (650)
.+++++++..+... ......+ +++.+. ..++|.|++|+|.. ..+.+...++.+.+.++..++
T Consensus 109 aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~ 177 (426)
T TIGR00483 109 ADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGY 177 (426)
T ss_pred CCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCC
Confidence 56888888876431 2222222 233332 34799999999987 455566677777777776553
No 204
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.12 E-value=0.0025 Score=73.90 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~L 238 (650)
.|++++++..+ .++++...+.++.+. ..++++.|++|.|..
T Consensus 95 aD~~IlVvDa~-~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 95 ADIAILVVDIN-EGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CCEEEEEEECC-CCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 46888888765 467777777777765 467999999999975
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.11 E-value=0.0055 Score=62.83 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred ceeeEEEEEEcCCCCCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHH
Q psy8479 195 NRIHVCLYFICPTGHGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQ 244 (650)
Q Consensus 195 ~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~ 244 (650)
-+||-|.+.|. ...+--|+ +..|. ..++++.|++|+|+++.+++.
T Consensus 148 ~~i~~~~v~~~---~~~~~~~~--~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~ 195 (233)
T cd01896 148 YKIHNADVLIR---EDITVDDL--IDVIEGNRVYIPCLYVYNKIDLISIEELD 195 (233)
T ss_pred hCeeeEEEEEc---cCCCHHHH--HHHHhCCceEeeEEEEEECccCCCHHHHH
Confidence 35666666554 23333332 44444 245999999999999888766
No 206
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.09 E-value=0.00026 Score=70.05 Aligned_cols=82 Identities=10% Similarity=0.104 Sum_probs=55.7
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
-.++|||||||++......-....+..++.. -...+|++||+ + +.++ +...|..+++.|
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~------------------~~~g~~~illV-i-~~~~-~t~~d~~~l~~l 107 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL------------------SAPGPHAFLLV-V-PLGR-FTEEEEQAVETL 107 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHh------------------cCCCCEEEEEE-E-ECCC-cCHHHHHHHHHH
Confidence 3789999999998643221121222222222 12468999999 6 3455 888999999888
Q ss_pred cCc------ceEEeeeecCCCCCHHHHHH
Q psy8479 616 DSK------VNIIPIIAKADTISKSELQK 638 (650)
Q Consensus 616 ~~~------vnviPvIaKaD~lt~~e~~~ 638 (650)
... -++|.|+.++|.|...++..
T Consensus 108 ~~~fg~~~~~~~ivv~T~~d~l~~~~~~~ 136 (196)
T cd01852 108 QELFGEKVLDHTIVLFTRGDDLEGGTLED 136 (196)
T ss_pred HHHhChHhHhcEEEEEECccccCCCcHHH
Confidence 764 58999999999998654433
No 207
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.08 E-value=0.0035 Score=62.25 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=66.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|..||||||||+.+....+..... +..+..+....+.+.+..+.|. ...+..+. ..|+
T Consensus 12 iG~~~vGKTsll~~~~~~~~~~~~~--~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~-------~~~~------ 76 (189)
T cd04121 12 VGDSDVGKGEILASLQDGSTESPYG--YNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF-------RSYS------ 76 (189)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC--CcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-------HHHh------
Confidence 9999999999999999865432211 1122333333344444334443 11222221 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
. ..|+++++..-+. ..+..+. .++..|. ..+++|.|.+|+|.-...++ ....++...+.+++.+
T Consensus 77 -------~--~ad~illVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~~~~ 144 (189)
T cd04121 77 -------R--GAQGIILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKRQV--ATEQAQAYAERNGMTF 144 (189)
T ss_pred -------c--CCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhccCC--CHHHHHHHHHHcCCEE
Confidence 1 2467888777542 2333332 2333332 46799999999996321111 1222333445577888
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 145 ~e~S 148 (189)
T cd04121 145 FEVS 148 (189)
T ss_pred EEec
Confidence 8775
No 208
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.08 E-value=0.0015 Score=63.54 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+||||||+.+....+.
T Consensus 7 vG~~~vGKTsl~~~~~~~~f~ 27 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNKFP 27 (175)
T ss_pred ECCCCCCHHHHHHHHHcCCCC
Confidence 999999999999999987653
No 209
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.05 E-value=0.0021 Score=64.51 Aligned_cols=124 Identities=14% Similarity=0.276 Sum_probs=63.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEE--EEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLK--AHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~--~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
||.+||||||||+.++...+... ..+|+.+. ...+.+.+..+.|. ...+..+. ..|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~----~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~-------~~~~---- 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR-------DGYY---- 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh----
Confidence 79999999999999997554332 12233332 23344444444444 12233332 1111
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
| ..+++++++..+.. .+..+. +..++.....+++|.|.+|+|.... +. .. +.+ ......++.
T Consensus 66 ---~--------~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~~-~~~-~~~~~~~~~ 130 (200)
T smart00176 66 ---I--------QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-KV-KA-KSI-TFHRKKNLQ 130 (200)
T ss_pred ---c--------CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-cC-CH-HHH-HHHHHcCCE
Confidence 1 13577777765432 122221 2223333356899999999996421 11 11 111 223445677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 131 ~~e~S 135 (200)
T smart00176 131 YYDIS 135 (200)
T ss_pred EEEEe
Confidence 77664
No 210
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.05 E-value=0.0018 Score=65.18 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.+||||||||+.+.+..+...
T Consensus 6 vGd~gVGKTSLi~~~~~~~f~~~ 28 (202)
T cd04102 6 VGDSGVGKSSLVHLICKNQVLGR 28 (202)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCC
Confidence 99999999999999998876554
No 211
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.03 E-value=0.0026 Score=62.68 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+||||||||+.+....+..
T Consensus 11 vGd~~vGKTsli~~~~~~~f~~ 32 (182)
T cd04172 11 VGDSQCGKTALLHVFAKDCFPE 32 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCC
Confidence 9999999999999999876543
No 212
>PLN03127 Elongation factor Tu; Provisional
Probab=97.02 E-value=0.0055 Score=68.92 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=41.3
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCCHHHHHH-HHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTISKSELQK-FKTNIMTEL 254 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt~~El~~-~K~~I~~~L 254 (650)
..+++++++... .++.+.+.+.+..+.. .++ +|.||+|.|.+..+++.. .++.+++.+
T Consensus 147 ~aD~allVVda~-~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 147 QMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred hCCEEEEEEECC-CCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 368899999854 5788888888888874 567 578899999987655333 333454444
No 213
>PRK12288 GTPase RsgA; Reviewed
Probab=97.01 E-value=0.00097 Score=72.56 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~ 134 (650)
..| ||.||||||||||+|.+...+.+
T Consensus 208 ~~~-vG~sgVGKSTLiN~Ll~~~~~~t 233 (347)
T PRK12288 208 SIF-VGQSGVGKSSLINALLPEAEILV 233 (347)
T ss_pred EEE-ECCCCCCHHHHHHHhccccceee
Confidence 355 99999999999999999866554
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.01 E-value=0.0049 Score=62.30 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=38.8
Q ss_pred eeEEEEEEcCCCC------CCCcchHHHHHHhcc-C-CCeeeeeecccCCC----HHHHHHHHHHHHHHHHHC
Q psy8479 197 IHVCLYFICPTGH------GLKSLDLVCMKKLDS-K-VNIIPIIAKADTIS----KSELQKFKTNIMTELTSN 257 (650)
Q Consensus 197 VH~cLYfI~ps~h------~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt----~~El~~~K~~I~~~L~~~ 257 (650)
.++++++|..+.. +.....+..+..+.. . .++|.|++|.|..+ ......+++.+...|...
T Consensus 101 ~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~ 173 (219)
T cd01883 101 ADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKV 173 (219)
T ss_pred CCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHc
Confidence 5789999987642 344444444444432 2 47899999999984 444556666666556554
No 215
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.01 E-value=0.0017 Score=62.90 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=52.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+||||||+.|....+... .+|..+....+.. .++.+. + ..+..+. ..|
T Consensus 19 ~G~~~~GKTsL~~~~~~~~~~~~-----~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~-------~~~------- 77 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGESVTT-----IPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLW-------RHY------- 77 (175)
T ss_pred EcCCCCCHHHHHHHHhcCCCCCc-----CCccccceEEEEE--CCEEEEEEECCCChhhHHHH-------HHH-------
Confidence 99999999999999975544221 1232222222222 233332 1 1111111 111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTI 238 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~L 238 (650)
+. ..++++|++..+.+. +....-.+.+.+. ..++++.|.+|+|..
T Consensus 78 ------~~--~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 78 ------YT--NTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred ------hC--CCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 11 246899999876432 3333333333333 246899999999964
No 216
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.00 E-value=0.0014 Score=61.64 Aligned_cols=127 Identities=19% Similarity=0.321 Sum_probs=66.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
||..|+||||||+.|.+..+.....++.+ .......+.+.+..+.|. ...|..+.. .+
T Consensus 5 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~-------~~------- 68 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD-------IF------- 68 (162)
T ss_dssp EESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH-------HH-------
T ss_pred ECCCCCCHHHHHHHHHhhccccccccccc--ccccccccccccccccccccccccccccccccc-------cc-------
Confidence 99999999999999998765433222221 122222333443333333 223332221 00
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc---c-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD---S-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~---~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
.+ ..++++++.+.+. ..+..+. .++..+. . .++++.|.+|+|.....++. .+.+++....++..
T Consensus 69 ~~--------~~~~~ii~fd~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~~~~~~~ 137 (162)
T PF00071_consen 69 YR--------NSDAIIIVFDVTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS--VEEAQEFAKELGVP 137 (162)
T ss_dssp HT--------TESEEEEEEETTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC--HHHHHHHHHHTTSE
T ss_pred cc--------ccccccccccccccccccccc-cccccccccccccccceeeeccccccccccch--hhHHHHHHHHhCCE
Confidence 11 1346666655432 2333333 3333332 3 47899999999976522211 22344455667777
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 138 ~~e~S 142 (162)
T PF00071_consen 138 YFEVS 142 (162)
T ss_dssp EEEEB
T ss_pred EEEEE
Confidence 77765
No 217
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.97 E-value=0.0078 Score=66.96 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=50.3
Q ss_pred eeEEEEEEcCCCCCC-CcchHHHHHHhcc-CC-CeeeeeecccCCCHHHHHHHHHHHHHHHHHC---CCcEEeCCC-Cch
Q psy8479 197 IHVCLYFICPTGHGL-KSLDLVCMKKLDS-KV-NIIPIIAKADTISKSELQKFKTNIMTELTSN---GVHIYEFPT-DDE 269 (650)
Q Consensus 197 VH~cLYfI~ps~h~L-k~lDI~~mk~L~~-~v-nvIPVItKAD~Lt~~El~~~K~~I~~~L~~~---~I~if~f~~-d~~ 269 (650)
++++++++..+ +++ .......+..+.. .+ +++.|++|+|+++.++.......++..+... ++.++.... ..+
T Consensus 109 ~D~~llVVDa~-~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~ 187 (411)
T PRK04000 109 MDGAILVIAAN-EPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKV 187 (411)
T ss_pred CCEEEEEEECC-CCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCc
Confidence 46788888765 344 5555556666643 33 6999999999998777665556666666442 456666542 223
Q ss_pred hHHHHHHHhh
Q psy8479 270 TMSDVNAAMT 279 (650)
Q Consensus 270 ~~~~~~~~~~ 279 (650)
....+...+.
T Consensus 188 gI~~L~~~L~ 197 (411)
T PRK04000 188 NIDALIEAIE 197 (411)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 218
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.97 E-value=0.00063 Score=66.93 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=34.9
Q ss_pred ccCCCCCCcccccccccCCCCceeecCCCCCChhhHhhhhhCcCCCC-------CCCCCCCCcEEE
Q psy8479 87 WVNTRTPPPNFLEKSWNFIPGKAYKPCETGLGKSTLMDSLFNTSFES-------TPSPHSLPSVKL 145 (650)
Q Consensus 87 ~vG~~~lp~Q~~rk~~~~k~g~~FnVG~SGvGKSTlINtLf~~~~~~-------~~s~~~~~T~~I 145 (650)
.-|+..|-..+.....+ +..+.| ||.+|||||||||+|++..... ..+..++.|...
T Consensus 110 ~~gi~eL~~~l~~~l~~-~~~~~~-~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~ 173 (190)
T cd01855 110 GWGVEELINAIKKLAKK-GGDVYV-VGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL 173 (190)
T ss_pred CCCHHHHHHHHHHHhhc-CCcEEE-EcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee
Confidence 34555555544432211 134455 9999999999999999976533 234455555544
No 219
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.94 E-value=0.0017 Score=66.95 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=77.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|++|+||||..+.+|... .+.-+...+.|..++...+... +.+.|+ ..+....-.|...|. ..+-
T Consensus 5 mG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~-------~~if- 74 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQR-------EEIF- 74 (232)
T ss_dssp EESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCH-------HHHH-
T ss_pred EcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccH-------HHHH-
Confidence 8999999999999999853 2222334455665554333211 222333 111111111111111 1111
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchH-------HHHHHhccCCCeeeeeecccCCCHHHHHHHH----HHHHHHHHH
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDL-------VCMKKLDSKVNIIPIIAKADTISKSELQKFK----TNIMTELTS 256 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI-------~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K----~~I~~~L~~ 256 (650)
..|++.+|.|...... -.-|+ +.+...+...+|-..|-|.|.++.++..... +.|.+.+..
T Consensus 75 -------~~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~ 146 (232)
T PF04670_consen 75 -------SNVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELED 146 (232)
T ss_dssp -------CTESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 2478999999864222 22232 2233444677999999999999988876644 455555666
Q ss_pred CC---CcEEeCCCCchhHHHHH-HHhhhccCCCC
Q psy8479 257 NG---VHIYEFPTDDETMSDVN-AAMTIFSSIPC 286 (650)
Q Consensus 257 ~~---I~if~f~~d~~~~~~~~-~~~~~~~~~P~ 286 (650)
.+ +.+|.-..-|+.+.+.- +-++.+ +|.
T Consensus 147 ~~~~~~~~~~TSI~D~Sly~A~S~Ivq~L--iP~ 178 (232)
T PF04670_consen 147 LGIEDITFFLTSIWDESLYEAWSKIVQKL--IPN 178 (232)
T ss_dssp TT-TSEEEEEE-TTSTHHHHHHHHHHHTT--STT
T ss_pred ccccceEEEeccCcCcHHHHHHHHHHHHH--ccc
Confidence 66 55665443344444332 234444 774
No 220
>COG2262 HflX GTPases [General function prediction only]
Probab=96.92 E-value=0.001 Score=72.85 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=67.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec-c-hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK-E-DSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~-~-~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
||-+|.|||||+|.|++...+... ...-|+.-+...+.|.++ .+-|. . .-...+-..|-+.|...|++-...
T Consensus 198 vGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~a--- 272 (411)
T COG2262 198 VGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEA--- 272 (411)
T ss_pred EeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcC---
Confidence 999999999999999988766431 011122222223444432 22222 1 122334445567888888774322
Q ss_pred ccccCCceeeEEEEEEcCCCCCC-Ccch--HHHHHHhc-cCCCeeeeeecccCCCHHH
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGL-KSLD--LVCMKKLD-SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~L-k~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~E 242 (650)
| +.|..+..+-..+ ..++ ..+|+.|. ...++|+|++|.|++...+
T Consensus 273 -----D----lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 273 -----D----LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred -----C----EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 2 3444555442211 1111 45566664 3569999999999998876
No 221
>PLN00023 GTP-binding protein; Provisional
Probab=96.92 E-value=0.0025 Score=68.78 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.+||||||||+.|.+..+...
T Consensus 27 LGdsGVGKTSLI~rf~~g~F~~~ 49 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGSSIAR 49 (334)
T ss_pred ECCCCCcHHHHHHHHhcCCcccc
Confidence 99999999999999998766543
No 222
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.90 E-value=0.0044 Score=71.95 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=64.8
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec----chhHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK----EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~----~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
+.+ +|.+|+|||||+|.|.+..+... ..++.|..+..+.+.+.++ .+.+. ...|..+.
T Consensus 90 V~I-~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r-------------- 152 (587)
T TIGR00487 90 VTI-MGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMR-------------- 152 (587)
T ss_pred EEE-ECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchhhHH--------------
Confidence 344 99999999999999998765543 2234455554444444332 33332 22222211
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
. |.. ...+++++++..+ .++.+..++.++.+. ..+|+|.+++|+|...
T Consensus 153 ~---rga-----~~aDiaILVVda~-dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 153 A---RGA-----KVTDIVVLVVAAD-DGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred H---hhh-----ccCCEEEEEEECC-CCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 0 111 1245677777543 567777777777765 4689999999999853
No 223
>KOG1423|consensus
Probab=96.89 E-value=0.0046 Score=65.59 Aligned_cols=116 Identities=13% Similarity=0.173 Sum_probs=61.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE----EEE---EEEeeCCceeecchh--HHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL----KAH---TYELQENNVKLKEDS--FKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I----~~~---~~~l~e~g~~L~~~~--w~~Ii~yI~~qf~~yL~eE 182 (650)
+|..|+|||||+|.|.|+++.+...+....+..+ ++. -++++..|+-..... ...+.+ +++.-
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s--------~lq~~ 149 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS--------VLQNP 149 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH--------hhhCH
Confidence 9999999999999999999876533321111111 110 123344444333221 122221 22221
Q ss_pred HhhhhcccccCCceeeEEEEEEcCC--CCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPT--GHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQ 244 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps--~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~ 244 (650)
.+.+ + +-+|++.+...+ ++.+.+.=+.+++..+ .++-|.|++|.|++.+.-+.
T Consensus 150 ---~~a~----q-~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 150 ---RDAA----Q-NADCVVVVVDASATRTPLHPRVLHMLEEYS-KIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred ---HHHH----h-hCCEEEEEEeccCCcCccChHHHHHHHHHh-cCCceeeccchhcchhhhHH
Confidence 1111 0 124555555544 6666665555555443 44777899999999775443
No 224
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.84 E-value=0.0008 Score=71.42 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~ 134 (650)
.| +|.||||||||||+|.......+
T Consensus 168 vl-~GqSGVGKSSLiN~L~p~~~~~t 192 (301)
T COG1162 168 VL-LGQSGVGKSTLINALLPELNQKT 192 (301)
T ss_pred EE-ECCCCCcHHHHHHhhCchhhhhh
Confidence 44 99999999999999998644443
No 225
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.83 E-value=0.0014 Score=63.82 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=55.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec--------chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK--------EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~--------~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+|-.|+|||||++.|....+.. ..+|..++...+.+.+..+.+- ...|....
T Consensus 20 lGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~--------------- 79 (175)
T PF00025_consen 20 LGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYF--------------- 79 (175)
T ss_dssp EESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGH---------------
T ss_pred ECCCccchHHHHHHhhhccccc-----cCcccccccceeeeCcEEEEEEeccccccccccceeec---------------
Confidence 9999999999999998754322 2233334433443332222221 12333221
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTI 238 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~L 238 (650)
. .+|+++|+|..+.+ ++.+.-..+...|. ..+|++.+++|.|..
T Consensus 80 ---------~--~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 80 ---------Q--NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ---------T--TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ---------c--ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 1 25799999987643 34444333333333 256999999999964
No 226
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.83 E-value=0.0016 Score=68.48 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVK 144 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~ 144 (650)
||.+|||||||||+|.+.+.... +..++.|..
T Consensus 124 vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~ 155 (276)
T TIGR03596 124 VGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKG 155 (276)
T ss_pred ECCCCCCHHHHHHHHhCCCcccc-CCCCCeecc
Confidence 99999999999999998764443 344444443
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.81 E-value=0.0045 Score=63.09 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=19.3
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||||.|.+..+.
T Consensus 6 vG~~~vGKTSLi~r~~~~~f~ 26 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERRFK 26 (220)
T ss_pred ECCCCCcHHHHHHHHhcCCCC
Confidence 999999999999999987764
No 228
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0018 Score=74.88 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~e 181 (650)
..+++ ||-.|||||||+|+|+|.+ .+.+.-||-|++-..-.+...++.+.+. .++..+.. .
T Consensus 4 ~~val-vGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S------------~ 68 (653)
T COG0370 4 LTVAL-VGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS------------E 68 (653)
T ss_pred ceEEE-ecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC------------c
Confidence 35778 9999999999999999974 3467788888887766666665555544 23332221 1
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccC
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADT 237 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~ 237 (650)
+.++.|.. +.+.++++++-.+..+. |.-.=.-.++-+.-..|+|.++++.|.
T Consensus 69 DE~Var~~--ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 69 DEKVARDF--LLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred hHHHHHHH--HhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhh
Confidence 12233331 33455666666666542 211111234444457789999999885
No 229
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.81 E-value=0.0052 Score=60.53 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+||||||+.+....+..
T Consensus 9 vG~~~vGKTsli~~~~~~~f~~ 30 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNAFPK 30 (191)
T ss_pred ECCCCCCHHHHHHHHHhCCCCc
Confidence 9999999999999999866543
No 230
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.80 E-value=0.0023 Score=62.66 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.2
Q ss_pred eeecCCCCCChhhHhhhhhCcCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
.+ +|.+|+|||||+|.|....+.
T Consensus 5 ~i-vG~~g~GKStLl~~l~~~~~~ 27 (187)
T cd04129 5 VI-VGDGACGKTSLLSVFTLGEFP 27 (187)
T ss_pred EE-ECCCCCCHHHHHHHHHhCCCC
Confidence 45 999999999999999865543
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.79 E-value=0.016 Score=59.27 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCC------CHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTI------SKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~L------t~~El~~~K~~I~~~L~ 255 (650)
.++|++++..+ .++......+++.+. ..+++|.|++|.|.+ ++++...-...|.+.+.
T Consensus 97 aD~~ilVvD~~-~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n 161 (222)
T cd01885 97 CDGALVVVDAV-EGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQVN 161 (222)
T ss_pred cCeeEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHh
Confidence 46788888754 466666677777664 467999999999975 66665554444444443
No 232
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.74 E-value=0.005 Score=60.39 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=54.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+||||||||+.+....+...-.++.+.+.. ..+.+.+..+.|. ...|..+..
T Consensus 7 ~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~---~~~~~~~~~v~l~i~Dt~G~~~~~~~~~---------------- 67 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVSVDGNTVNLGLWDTAGQEDYNRLRP---------------- 67 (176)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE---EEEEECCEEEEEEEEECCCCccccccch----------------
Confidence 999999999999999987664432222222111 1233433333333 122222220
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcch---HHHHHHhccCCCeeeeeecccCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLD---LVCMKKLDSKVNIIPIIAKADTI 238 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lD---I~~mk~L~~~vnvIPVItKAD~L 238 (650)
. .+. ..|+++++..-+. ..+..+. +..++.....+++|.|.+|+|..
T Consensus 68 --~--~~~--~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 68 --L--SYR--GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred --h--hcC--CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 0 122 2356777665432 2333331 22233333568999999999984
No 233
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.73 E-value=0.0082 Score=60.05 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=16.3
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.+|+|||||||.++...+
T Consensus 15 iG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred ECCCCCCHHHHHHHHHhCCC
Confidence 99999999999986654433
No 234
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0027 Score=59.35 Aligned_cols=133 Identities=17% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEE-EEEEeeCCceeecchhHH-HHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKA-HTYELQENNVKLKEDSFK-SIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~-~~~~l~e~g~~L~~~~w~-~Ii~yI~~qf~~yL~eE~ 183 (650)
|-+.| ||++|.|||||.|+|-|...+.+ +|+-+.. ....|+..|-++...+|- .|+- +
T Consensus 2 Kri~~-vG~~gcGKTtL~q~L~G~~~lyk------KTQAve~~d~~~IDTPGEy~~~~~~Y~aL~t---------t---- 61 (148)
T COG4917 2 KRIAF-VGQVGCGKTTLFQSLYGNDTLYK------KTQAVEFNDKGDIDTPGEYFEHPRWYHALIT---------T---- 61 (148)
T ss_pred ceeEE-ecccccCchhHHHHhhcchhhhc------ccceeeccCccccCCchhhhhhhHHHHHHHH---------H----
Confidence 36789 99999999999999999876654 3444432 223556666555555552 2321 1
Q ss_pred hhhhcccccCCceeeEEEEEEcCCC--CCCC--cchHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTG--HGLK--SLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~--h~Lk--~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
..|- .+..|....+- .++. -+|+ ..+ ++|-|++|+|.-....+...++.++ +....
T Consensus 62 --------~~da--dvi~~v~~and~~s~f~p~f~~~------~~k-~vIgvVTK~DLaed~dI~~~~~~L~-eaGa~-- 121 (148)
T COG4917 62 --------LQDA--DVIIYVHAANDPESRFPPGFLDI------GVK-KVIGVVTKADLAEDADISLVKRWLR-EAGAE-- 121 (148)
T ss_pred --------hhcc--ceeeeeecccCccccCCcccccc------ccc-ceEEEEecccccchHhHHHHHHHHH-HcCCc--
Confidence 1121 23344443221 1122 1222 122 4999999999987666655554433 22322
Q ss_pred cEEeCCC-CchhHHHHHHHh
Q psy8479 260 HIYEFPT-DDETMSDVNAAM 278 (650)
Q Consensus 260 ~if~f~~-d~~~~~~~~~~~ 278 (650)
+||.... |.....++...+
T Consensus 122 ~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 122 PIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ceEEEeccCcccHHHHHHHH
Confidence 4665542 333344444333
No 235
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.73 E-value=0.018 Score=67.09 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=29.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHH-HhccCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMK-KLDSKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk-~L~~~vnvIPVItKAD~Lt 239 (650)
.+++++++..+ .+.+...+..+. ++...+++|+|++|+|...
T Consensus 94 aD~aILVvDat-~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 94 CEGALLLVDAA-QGIEAQTLANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred CCEEEEEecCC-CCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc
Confidence 36788888765 456665654433 3445679999999999753
No 236
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.73 E-value=0.0013 Score=61.67 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.2
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
.| +|.+|+|||||||+|++..... .+..++.|...
T Consensus 87 ~~-~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~ 121 (141)
T cd01857 87 GL-VGYPNVGKSSLINALVGKKKVS-VSATPGKTKHF 121 (141)
T ss_pred EE-ECCCCCCHHHHHHHHhCCCcee-eCCCCCcccce
Confidence 44 9999999999999999987553 44455555544
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.67 E-value=0.013 Score=68.68 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=43.2
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCC--HHHHHHHHHHHHHHHHHCC---CcEEeC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTIS--KSELQKFKTNIMTELTSNG---VHIYEF 264 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt--~~El~~~K~~I~~~L~~~~---I~if~f 264 (650)
..+++++++..+ .++.+.+.+.+..+.. . -++|.|++|+|... .+.+...+..+.+.+...+ +.++..
T Consensus 127 ~aD~~llVvda~-~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipi 201 (632)
T PRK05506 127 TADLAIILVDAR-KGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPI 201 (632)
T ss_pred hCCEEEEEEECC-CCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEE
Confidence 356888888764 5677766555555442 2 37889999999985 4445556666665555544 335544
No 238
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.65 E-value=0.013 Score=69.44 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=40.8
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
++++++++..+ .++...+..+++.+.. .+++|.|++|.|....+ +......|++.|.
T Consensus 99 ~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 99 LDGAVAVLDAV-GGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred hCEEEEEEeCC-CCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 36888888765 4677777888887764 67999999999988643 4445555555553
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.65 E-value=0.029 Score=62.32 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred eeEEEEEEcCCCCCC-CcchHHHHHHhcc-CC-CeeeeeecccCCCHHHHHHHHHHHHHHHHHC---CCcEEeCCC-Cch
Q psy8479 197 IHVCLYFICPTGHGL-KSLDLVCMKKLDS-KV-NIIPIIAKADTISKSELQKFKTNIMTELTSN---GVHIYEFPT-DDE 269 (650)
Q Consensus 197 VH~cLYfI~ps~h~L-k~lDI~~mk~L~~-~v-nvIPVItKAD~Lt~~El~~~K~~I~~~L~~~---~I~if~f~~-d~~ 269 (650)
.|++++++..+ +++ .+...+.+..+.. .+ ++|.|++|+|.++.++.......+.+.+... +..++.... ..+
T Consensus 104 aD~aIlVVDa~-~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~ 182 (406)
T TIGR03680 104 MDGALLVIAAN-EPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNA 182 (406)
T ss_pred CCEEEEEEECC-CCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCC
Confidence 57889998876 344 5555555555543 23 6899999999998776655555666655543 445555432 222
Q ss_pred hHHHHHHHhh
Q psy8479 270 TMSDVNAAMT 279 (650)
Q Consensus 270 ~~~~~~~~~~ 279 (650)
....+.+.+.
T Consensus 183 gi~~L~e~L~ 192 (406)
T TIGR03680 183 NIDALLEAIE 192 (406)
T ss_pred ChHHHHHHHH
Confidence 3344444443
No 240
>PRK00007 elongation factor G; Reviewed
Probab=96.62 E-value=0.01 Score=70.37 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=42.1
Q ss_pred eEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
++|++++.. ..++...+..++..+.. ..++|.+++|.|....+ .......|++.|.
T Consensus 100 D~~vlVvda-~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~ 156 (693)
T PRK00007 100 DGAVAVFDA-VGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLG 156 (693)
T ss_pred CEEEEEEEC-CCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 588888875 46889999998888874 67999999999988644 4455555655553
No 241
>KOG1424|consensus
Probab=96.59 E-value=0.0016 Score=72.94 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=34.1
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEee
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQ 153 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~ 153 (650)
+=| ||-.||||||+||+|.|+|... +|.+||+|..+. ++.|.
T Consensus 317 VG~-VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQ--Ti~ls 358 (562)
T KOG1424|consen 317 VGF-VGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQ--TIFLS 358 (562)
T ss_pred EEe-ecCCCCchhHHHHHHhcCceee-eecCCCCcceeE--EEEcC
Confidence 345 9999999999999999998655 788899998774 55554
No 242
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.59 E-value=0.0023 Score=66.19 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.1
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCC
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~ 134 (650)
-..| +|.||||||||||+|.+.....+
T Consensus 122 ~~~~-~G~sgvGKStLiN~L~~~~~~~t 148 (245)
T TIGR00157 122 ISVF-AGQSGVGKSSLINALDPSVKQQV 148 (245)
T ss_pred EEEE-ECCCCCCHHHHHHHHhhhhhccc
Confidence 4456 99999999999999999765543
No 243
>PRK12289 GTPase RsgA; Reviewed
Probab=96.57 E-value=0.0021 Score=70.11 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
..| +|.||||||||||+|++.....
T Consensus 175 ~v~-iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 175 TVV-AGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred EEE-EeCCCCCHHHHHHHHcCccccc
Confidence 456 9999999999999999876544
No 244
>PRK12739 elongation factor G; Reviewed
Probab=96.56 E-value=0.012 Score=69.67 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=41.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
+++|++++..+ .++...+..+++.+. ...++|.+++|.|....+ +....+.|++.+.
T Consensus 97 ~D~~ilVvDa~-~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~ 154 (691)
T PRK12739 97 LDGAVAVFDAV-SGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLG 154 (691)
T ss_pred hCeEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 36899999865 578888888888887 467999999999998643 4444555555443
No 245
>KOG1490|consensus
Probab=96.49 E-value=0.0095 Score=66.74 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=49.3
Q ss_pred EEEEEEcCCC---CCCCcchHHH---HHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCC-CcEEeCC
Q psy8479 199 VCLYFICPTG---HGLKSLDLVC---MKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNG-VHIYEFP 265 (650)
Q Consensus 199 ~cLYfI~ps~---h~Lk~lDI~~---mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~-I~if~f~ 265 (650)
|+|||+.-++ +++.+ ...+ ||-|...-++|.|++|+|.|.++.+..-++.+.+++...+ ++|+.-.
T Consensus 250 aVLYfmDLSe~CGySva~-QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAA-QVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred hheeeeechhhhCCCHHH-HHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 7999998763 33322 2333 4444445589999999999999999999988988888865 8888754
No 246
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.47 E-value=0.0023 Score=62.79 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=26.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
||.+|+|||||||+|++.+... .+..|+.|..+
T Consensus 123 vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~ 155 (172)
T cd04178 123 VGFPNVGKSSLINSLKRSRACN-VGATPGVTKSM 155 (172)
T ss_pred EcCCCCCHHHHHHHHhCcccce-ecCCCCeEcce
Confidence 9999999999999999976543 45556666654
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.42 E-value=0.036 Score=62.89 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=36.8
Q ss_pred eeeEEEEEEcCCCCCCCcchHH---HHHHhccCCCeeeeeecccCCCHH--HHHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLV---CMKKLDSKVNIIPIIAKADTISKS--ELQKFKTNIMTELTS 256 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~---~mk~L~~~vnvIPVItKAD~Lt~~--El~~~K~~I~~~L~~ 256 (650)
..+++++++... .++.+.+.+ ++..+. .-++|.|++|.|....+ .+...++.+...+..
T Consensus 130 ~aD~allVVDa~-~G~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~ 193 (474)
T PRK05124 130 TCDLAILLIDAR-KGVLDQTRRHSFIATLLG-IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQ 193 (474)
T ss_pred hCCEEEEEEECC-CCccccchHHHHHHHHhC-CCceEEEEEeeccccchhHHHHHHHHHHHHHHHh
Confidence 457899998864 566665444 333333 22789999999998533 345555566554443
No 248
>KOG0094|consensus
Probab=96.39 E-value=0.028 Score=56.30 Aligned_cols=112 Identities=19% Similarity=0.340 Sum_probs=74.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
-| +|.++|||||||+-.+-.++..+-..++| +.+-+.+++|.+..++|. -+-++.|+ -.
T Consensus 26 Vf-lGdqsVGKTslItRf~yd~fd~~YqATIG--iDFlskt~~l~d~~vrLQlWDTAGQERFrsli-------ps----- 90 (221)
T KOG0094|consen 26 VF-LGDQSVGKTSLITRFMYDKFDNTYQATIG--IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PS----- 90 (221)
T ss_pred EE-EccCccchHHHHHHHHHhhhcccccceee--eEEEEEEEEEcCcEEEEEEEecccHHHHhhhh-------hh-----
Confidence 46 99999999999999987766554323332 344456778888777776 34455554 11
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc--------cCCCeeeeeecccCCCHHHHHHHHH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD--------SKVNIIPIIAKADTISKSELQKFKT 248 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~--------~~vnvIPVItKAD~Lt~~El~~~K~ 248 (650)
-+.|+.|-++.|=|.. ...+...+ |||. ..|.|+.|-+|.|.+.+.+....-.
T Consensus 91 --------Y~Rds~vaviVyDit~-~~Sfe~t~----kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg 151 (221)
T KOG0094|consen 91 --------YIRDSSVAVIVYDITD-RNSFENTS----KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEG 151 (221)
T ss_pred --------hccCCeEEEEEEeccc-cchHHHHH----HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHH
Confidence 3567888899998864 23443333 3443 2478888899999998877655443
No 249
>PRK13351 elongation factor G; Reviewed
Probab=96.36 E-value=0.013 Score=69.21 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=41.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSN 257 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~ 257 (650)
.++|++++..+ .+........++.+. ..++++.|++|+|.... ++......|+..|...
T Consensus 97 aD~~ilVvd~~-~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 97 LDGAVVVFDAV-TGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLEDIEERFGKR 156 (687)
T ss_pred CCEEEEEEeCC-CCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCCC
Confidence 36788888765 456656666666665 46799999999998764 4556666666666443
No 250
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.32 E-value=0.032 Score=65.01 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=62.7
Q ss_pred CceeecCCCCCChhhHhhhhhCcCC-CCCC---C----------CCCCCcEEEEEEEEEeeCCceeec---chhHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSF-ESTP---S----------PHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVD 169 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~-~~~~---s----------~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~ 169 (650)
-+.+ +|-.++|||||++.|+...- .... . ...+-|+... ...+..+++.++ .-.+..
T Consensus 3 NIaI-iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~--~~~v~~~~~kinlIDTPGh~D--- 76 (594)
T TIGR01394 3 NIAI-IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAK--NTAIRYNGTKINIVDTPGHAD--- 76 (594)
T ss_pred EEEE-EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEee--eEEEEECCEEEEEEECCCHHH---
Confidence 4566 99999999999999986421 1110 0 0122333332 233344444443 222211
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 170 YIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 170 yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
|... ...++ + .++++++++..+ .++.+.....++.+. ..+++|+|++|.|...
T Consensus 77 F~~e-v~~~l-------~--------~aD~alLVVDa~-~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 77 FGGE-VERVL-------G--------MVDGVLLLVDAS-EGPMPQTRFVLKKALELGLKPIVVINKIDRPS 130 (594)
T ss_pred HHHH-HHHHH-------H--------hCCEEEEEEeCC-CCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC
Confidence 1110 01222 1 246888888765 467777777777765 4679999999999754
No 251
>PRK10218 GTP-binding protein; Provisional
Probab=96.31 E-value=0.028 Score=65.55 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=62.4
Q ss_pred CceeecCCCCCChhhHhhhhhCcCC-CCC-CC--------C--CCCCcEEEEEEEEEeeCCceeec------chhHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSF-EST-PS--------P--HSLPSVKLKAHTYELQENNVKLK------EDSFKSIV 168 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~-~~~-~s--------~--~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii 168 (650)
-+.+ +|..|+|||||++.|+.... ... .. . ...+...+......+..+++.++ ...|...+
T Consensus 7 nIaI-iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 7 NIAI-IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred EEEE-ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 4556 99999999999999997421 111 00 0 01112233333344445555544 11222211
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 169 DYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 169 ~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
..|+ + .++++++++..+ .++.......++.+. ..+++|.|++|.|...
T Consensus 86 -------~~~l-------~--------~aDg~ILVVDa~-~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 86 -------ERVM-------S--------MVDSVLLVVDAF-DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred -------HHHH-------H--------hCCEEEEEEecc-cCccHHHHHHHHHHHHcCCCEEEEEECcCCCC
Confidence 1222 1 257888888765 466666666666654 5679999999999753
No 252
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.28 E-value=0.034 Score=64.87 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 198 HVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
+++++++..+ .+++..++..+.++. ...++|+|++|+|...
T Consensus 99 D~aILVVDas-~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 99 EGALLVVDAS-QGVEAQTLANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred CEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence 5678888765 566666665555443 5679999999999753
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.17 E-value=0.045 Score=60.81 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=31.0
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CC-CeeeeeecccCCCH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KV-NIIPIIAKADTISK 240 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt~ 240 (650)
..+++++++... .++.+.+.+.+..+.. .+ ++|.|++|.|....
T Consensus 103 ~aD~allVVda~-~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 103 TADLAVLLVDAR-KGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred hCCEEEEEEECC-CCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 356888888864 6777777655554443 23 68999999999853
No 254
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.12 E-value=0.0043 Score=66.88 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
||-.|||||||||+|.+.+. .+++..||.|..+
T Consensus 138 vG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~ 170 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGI 170 (322)
T ss_pred EcCCCCcHHHHHHHHhcccc-eeeCCCCceecce
Confidence 99999999999999999876 5567777776654
No 255
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.11 E-value=0.03 Score=62.20 Aligned_cols=65 Identities=5% Similarity=0.103 Sum_probs=41.2
Q ss_pred eeeEEEEEEcCC------CCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 196 RIHVCLYFICPT------GHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 196 RVH~cLYfI~ps------~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
+-.+.|++.... +....+.+..++..|.+ ..|+|.|++|+|.++++ ...+.+.+. ..+++.+...
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e-t~~l~~~l~---eky~vpvl~v 215 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPE-TEALRQELE---EKYDVPVLAM 215 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCch-hHHHHHHHH---HHhCCceEEE
Confidence 334556665322 14577788999999986 56999999999988654 333332222 3456665544
No 256
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.11 E-value=0.0064 Score=56.43 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=57.5
Q ss_pred ccccccCCCCCcccccc---cccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 537 GRGIVRSPGERKEKNAE---FFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~---~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
.+++|||||||.+.... ..|..-+..|+.. -..++++++. +.. .+.....+.++++
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~v-~d~-~~~~~~~~~~~~~ 104 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN-------------------RENLKGVVLL-IDS-RHGPTEIDLEMLD 104 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHh-------------------ChhhhEEEEE-EEc-CcCCCHhHHHHHH
Confidence 89999999999975422 1121122333333 0346677776 322 2334566666666
Q ss_pred hccCc-ceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 614 KLDSK-VNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 614 ~l~~~-vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
.+... .+++.|+.|+|.++..+....+..+...+
T Consensus 105 ~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l 139 (170)
T cd01876 105 WLEELGIPFLVVLTKADKLKKSELAKALKEIKKEL 139 (170)
T ss_pred HHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHH
Confidence 66654 68899999999999998877776665443
No 257
>PRK13796 GTPase YqeH; Provisional
Probab=96.07 E-value=0.0025 Score=69.82 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=26.8
Q ss_pred ceeecCCCCCChhhHhhhhhCcCC----CCCCCCCCCCcEEE
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSF----ESTPSPHSLPSVKL 145 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~----~~~~s~~~~~T~~I 145 (650)
+.| ||.+|||||||||+|++... ..+.|..|+-|+.+
T Consensus 163 v~v-vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 163 VYV-VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EEE-EcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 445 99999999999999997532 22245667766654
No 258
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.98 E-value=0.01 Score=57.58 Aligned_cols=90 Identities=23% Similarity=0.205 Sum_probs=58.4
Q ss_pred ccccccCCCCCcccccc---cccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 537 GRGIVRSPGERKEKNAE---FFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~---~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
.+.+|||||+|..-... ..|..-+..|+.. -.++|+++|+ +..+ +++...++++++
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~ii~v-vd~~-~~~~~~~~~~~~ 123 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEK-------------------RENLKGVVLL-MDIR-HPLKELDLEMLE 123 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHh-------------------ChhhcEEEEE-ecCC-CCCCHHHHHHHH
Confidence 68999999998753321 1121122234332 0136788888 5443 468888887777
Q ss_pred hccC-cceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 614 KLDS-KVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 614 ~l~~-~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
.+.. ...+|-|+.|.|.+...++......|.+.+
T Consensus 124 ~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l 158 (179)
T TIGR03598 124 WLRERGIPVLIVLTKADKLKKSELNKQLKKIKKAL 158 (179)
T ss_pred HHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 6653 578999999999998877766555555544
No 259
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.93 E-value=0.025 Score=56.09 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|..|+|||||+|.|.+..+..
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcc
Confidence 9999999999999999976554
No 260
>PRK12740 elongation factor G; Reviewed
Probab=95.87 E-value=0.06 Score=63.49 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=38.8
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
.+++++++.++. ++......+++.+. ...++|.|++|+|.... ......+.+++.+
T Consensus 84 aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l~~~l 140 (668)
T PRK12740 84 LDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQLQEKL 140 (668)
T ss_pred hCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHH
Confidence 578999998764 56666766666665 36799999999998763 3344444555444
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=95.86 E-value=0.068 Score=61.47 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=30.2
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
+++|++++..+. ++......+++.+. ...|+|.|++|.|...
T Consensus 104 aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 104 VDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 568999998753 56655555555554 4679999999999753
No 262
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.83 E-value=0.052 Score=62.41 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=37.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
++++++++.++ .++......+++.+. ..+|+|.+++|.|....+ .......|++.|
T Consensus 103 aD~aIlVvDa~-~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~i~~~l 159 (526)
T PRK00741 103 VDSALMVIDAA-KGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDEIEEVL 159 (526)
T ss_pred CCEEEEEEecC-CCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHHHHHHh
Confidence 57889998865 456665556666554 467999999999976543 223344455444
No 263
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.79 E-value=0.0098 Score=62.99 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.1
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
+.| +|.||+|||||||+|++.....
T Consensus 164 ~~~-~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 164 SVL-VGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred EEE-ECCCCCCHHHHHHHHhchhhcc
Confidence 455 9999999999999999975544
No 264
>PRK00098 GTPase RsgA; Reviewed
Probab=95.79 E-value=0.011 Score=63.02 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
+.| +|+||+|||||||+|++.....
T Consensus 167 ~~~-~G~sgvGKStlin~l~~~~~~~ 191 (298)
T PRK00098 167 TVL-AGQSGVGKSTLLNALAPDLELK 191 (298)
T ss_pred EEE-ECCCCCCHHHHHHHHhCCcCCC
Confidence 345 9999999999999999875544
No 265
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.73 E-value=0.0097 Score=56.70 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.5
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~ 133 (650)
.+ +|.+|+|||||||+|.+.....
T Consensus 104 ~~-~G~~~~GKstlin~l~~~~~~~ 127 (155)
T cd01849 104 GV-IGYPNVGKSSVINALLNKLKLK 127 (155)
T ss_pred EE-EccCCCCHHHHHHHHHcccccc
Confidence 44 9999999999999999976543
No 266
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.63 E-value=0.017 Score=61.09 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
||.+|||||||||+|.+.+... ++..++.|..+
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~ 159 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQ 159 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEE
Confidence 9999999999999999976543 45566666655
No 267
>PTZ00416 elongation factor 2; Provisional
Probab=95.62 E-value=0.073 Score=64.47 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=42.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC------CHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI------SKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L------t~~El~~~K~~I~~~L~ 255 (650)
+++|++++.+. .++...+..+++.+.. +.++|.||+|.|.+ ++.|...-...+.++++
T Consensus 116 ~D~ailVvda~-~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in 180 (836)
T PTZ00416 116 TDGALVVVDCV-EGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVN 180 (836)
T ss_pred CCeEEEEEECC-CCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 57899999865 5788888888888874 67999999999987 45554444444444444
No 268
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.58 E-value=0.08 Score=58.11 Aligned_cols=54 Identities=7% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHhccC--CCeeeeeecccC-CCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 210 GLKSLDLVCMKKLDSK--VNIIPIIAKADT-ISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 210 ~Lk~lDI~~mk~L~~~--vnvIPVItKAD~-Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.+.+.|+..++.+.-. -|+|.|++++|. +.. -..+.+.|++.+..++..+..+.
T Consensus 182 ~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~--~~~~~~~i~~~~~~~~~~~i~~s 238 (364)
T PRK09601 182 ELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLAD--GNPYVKKVREIAAKEGAEVVVIC 238 (364)
T ss_pred CCCHHHHHHHHHhcccccCCeEEEEECCcccccc--ccHHHHHHHHHHHHcCCeEEEEE
Confidence 5677788888888743 399999999994 221 22355566666666666666554
No 269
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.54 E-value=0.0062 Score=65.25 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=53.3
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..++||||||+.+.- .....+.+.++. .+....+||+||+ +......+...|.++++.|
T Consensus 86 ~~l~VIDTPGL~d~~----~~~e~~~~~ik~----------------~l~~~g~DvVLyV-~rLD~~R~~~~DkqlLk~I 144 (313)
T TIGR00991 86 FTLNIIDTPGLIEGG----YINDQAVNIIKR----------------FLLGKTIDVLLYV-DRLDAYRVDTLDGQVIRAI 144 (313)
T ss_pred eEEEEEECCCCCchH----HHHHHHHHHHHH----------------HhhcCCCCEEEEE-eccCcccCCHHHHHHHHHH
Confidence 578999999999841 111122222322 1223479999999 7665557888889998888
Q ss_pred cCc------ceEEeeeecCCCCCH
Q psy8479 616 DSK------VNIIPIIAKADTISK 633 (650)
Q Consensus 616 ~~~------vnviPvIaKaD~lt~ 633 (650)
... -|+|-|+.++|.+.+
T Consensus 145 qe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 145 TDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHhhhhhhccEEEEEECCccCCC
Confidence 764 578999999998854
No 270
>KOG0078|consensus
Probab=95.48 E-value=0.087 Score=53.24 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=75.4
Q ss_pred Cceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEE--EEEEeeCCceeec--ch----hHHHHHHHHHHHHHH
Q psy8479 107 GKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKA--HTYELQENNVKLK--ED----SFKSIVDYIDNQFEA 177 (650)
Q Consensus 107 g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~--~~~~l~e~g~~L~--~~----~w~~Ii~yI~~qf~~ 177 (650)
.|-+- ||.||||||.|+-.+....+... ..+|+.|.. .++.|++..+.|. .- -+..|. ..
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~----~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~-------~s 80 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTS----FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT-------TA 80 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCC----ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH-------HH
Confidence 33344 99999999999988776554332 334444443 3455555444444 22 233333 34
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
|...-. -=.++|-|.- -.....+.. +|+++. ..|+++.|-+|+|.-.+ ++--+.+=.+.
T Consensus 81 YyrgA~-------------gi~LvyDitn-e~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~--R~V~~e~ge~l 143 (207)
T KOG0078|consen 81 YYRGAM-------------GILLVYDITN-EKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK--RQVSKERGEAL 143 (207)
T ss_pred HHhhcC-------------eeEEEEEccc-hHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc--ccccHHHHHHH
Confidence 443311 1146666642 233433333 666665 36799999999998663 22333344445
Q ss_pred HHHCCCcEEeCC
Q psy8479 254 LTSNGVHIYEFP 265 (650)
Q Consensus 254 L~~~~I~if~f~ 265 (650)
..++|+.+|...
T Consensus 144 A~e~G~~F~EtS 155 (207)
T KOG0078|consen 144 AREYGIKFFETS 155 (207)
T ss_pred HHHhCCeEEEcc
Confidence 567899999875
No 271
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.44 E-value=0.014 Score=56.68 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKL 145 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I 145 (650)
+|.+|+|||||||.|++.... ..+..++.|...
T Consensus 121 ~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~ 153 (171)
T cd01856 121 VGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGI 153 (171)
T ss_pred ECCCCCCHHHHHHHHhCCCce-eecCCCCEEeee
Confidence 999999999999999997654 233334444433
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=95.20 E-value=0.13 Score=51.17 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=24.4
Q ss_pred eeEEEEEEcCCCC-CCCcch---HHHHHHhccCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGH-GLKSLD---LVCMKKLDSKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h-~Lk~lD---I~~mk~L~~~vnvIPVItKAD~L 238 (650)
.++++++...+.+ .+..+. +..++.....+++|.|.+|+|..
T Consensus 88 ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 88 SDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4566666665432 233332 22333333567999999999964
No 273
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.17 E-value=0.068 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.0
Q ss_pred eeecCCCCCChhhHhhhhhCcCCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
.+ +|.+|+||||||+.+....+.
T Consensus 4 ~v-vG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 4 GI-VGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EE-ECCCCCcHHHHHHHHHhCCCC
Confidence 45 999999999999998776543
No 274
>KOG0084|consensus
Probab=95.14 E-value=0.093 Score=52.65 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=73.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~ 191 (650)
+|.||||||-|+--+..-.+..+-.+++| +.+...++.+++..++|. -|...=+ ++|+.... ...|.
T Consensus 15 iGds~VGKtCL~~Rf~~~~f~e~~~sTIG--VDf~~rt~e~~gk~iKlQ--IWDTAGQ---ERFrtit~---syYR~--- 81 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDTFTESYISTIG--VDFKIRTVELDGKTIKLQ--IWDTAGQ---ERFRTITS---SYYRG--- 81 (205)
T ss_pred ECCCCcChhhhhhhhccCCcchhhcceee--eEEEEEEeeecceEEEEE--eeecccc---HHHhhhhH---hhccC---
Confidence 99999999999998888665554333333 455556778887766665 2322111 22322111 12244
Q ss_pred cCCceeeEEEEEEcCC-CCCCCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc-EEeCC
Q psy8479 192 YHDNRIHVCLYFICPT-GHGLKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH-IYEFP 265 (650)
Q Consensus 192 ~~D~RVH~cLYfI~ps-~h~Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~-if~f~ 265 (650)
.|.+++.-.-| .+.+..+.. .|+.+ ...||.+.|-+|+|......... .........++|. ++.-.
T Consensus 82 -----ahGii~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~--~~a~~fa~~~~~~~f~ETS 153 (205)
T KOG0084|consen 82 -----AHGIIFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEKRVVST--EEAQEFADELGIPIFLETS 153 (205)
T ss_pred -----CCeEEEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhheecCH--HHHHHHHHhcCCcceeecc
Confidence 35555544433 345555554 23333 34679999999999864433222 1223344557887 44433
No 275
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.14 E-value=0.1 Score=56.51 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.6
Q ss_pred Ceeeeeeccc-CCCHHHHHHHHHHHHHHHH
Q psy8479 227 NIIPIIAKAD-TISKSELQKFKTNIMTELT 255 (650)
Q Consensus 227 nvIPVItKAD-~Lt~~El~~~K~~I~~~L~ 255 (650)
+.|.|++|+| .+..++++.+++.+.+...
T Consensus 277 ~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~ 306 (369)
T COG0536 277 PRIVVLNKIDLPLDEEELEELKKALAEALG 306 (369)
T ss_pred ceEEEEeccCCCcCHHHHHHHHHHHHHhcC
Confidence 8899999999 7788888888887765543
No 276
>KOG0073|consensus
Probab=95.03 E-value=0.069 Score=52.20 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=72.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|-.|+||||+++.|.+... ....+|..++.++..+. ++.|. -..-+.+..|+. +|+..
T Consensus 22 LGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~~--~~~L~iwDvGGq~~lr~~W~----nYfes------- 83 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEYK--GYTLNIWDVGGQKTLRSYWK----NYFES------- 83 (185)
T ss_pred EecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEec--ceEEEEEEcCCcchhHHHHH----Hhhhc-------
Confidence 99999999999999998752 22334454444444444 34443 233345555553 33322
Q ss_pred ccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHh-c-c---CCCeeeeeecccC---CCHHHHHHHHHHHHHHHHHCCC
Q psy8479 189 LNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKL-D-S---KVNIIPIIAKADT---ISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L-~-~---~vnvIPVItKAD~---Lt~~El~~~K~~I~~~L~~~~I 259 (650)
.|..+|++..+- .++.+. ...++.| . + ..+++.+.+|.|. |+.+++..... +.+.++.+.+
T Consensus 84 --------tdglIwvvDssD~~r~~e~-~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~-L~~l~ks~~~ 153 (185)
T KOG0073|consen 84 --------TDGLIWVVDSSDRMRMQEC-KQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALD-LEELAKSHHW 153 (185)
T ss_pred --------cCeEEEEEECchHHHHHHH-HHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhC-HHHhccccCc
Confidence 477888887532 222222 2223333 2 2 2499999999995 56666543322 2333366777
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
+++.+.
T Consensus 154 ~l~~cs 159 (185)
T KOG0073|consen 154 RLVKCS 159 (185)
T ss_pred eEEEEe
Confidence 777765
No 277
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.089 Score=58.47 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=89.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC-CCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST-PSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRSL 189 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~-~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~ 189 (650)
+|.---|||||+.+|++...... ..+..+-|..|..+++.+.++.+.+. .-.+...+. ..+.
T Consensus 6 ~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~-------~mia--------- 69 (447)
T COG3276 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFIS-------NLLA--------- 69 (447)
T ss_pred eeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHH-------HHHh---------
Confidence 56667899999999999643222 23345567777766666666543333 223333221 0000
Q ss_pred cccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc--CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 190 NTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS--KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 190 ~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~--~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
.=+=+|+|+++|.++ .++++...+.+--|.- .-|.|.||+|+|...+..+....++|...+.-.+.++|..
T Consensus 70 ---g~~~~d~alLvV~~d-eGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 70 ---GLGGIDYALLVVAAD-EGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred ---hhcCCceEEEEEeCc-cCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccc
Confidence 112368899999875 5788888887777764 3488999999999999988888888988887666666544
No 278
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=94.99 E-value=0.05 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=17.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.||+|||+|..-|...+...+
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~~~T 31 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKTVPT 31 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS---B
T ss_pred EcCCCCCHHHHHHHHhcCCcCCe
Confidence 99999999999999998755444
No 279
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.85 E-value=0.027 Score=55.94 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=47.9
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
-.+++|||||+|+.- .....|++. . .+. +.+++|++ . ...+...|..+++.|
T Consensus 52 ~~l~l~DtpG~~~~~-------~~~~~~l~~-~--------------~~~--~~d~~l~v-~---~~~~~~~d~~~~~~l 103 (197)
T cd04104 52 PNVTLWDLPGIGSTA-------FPPDDYLEE-M--------------KFS--EYDFFIII-S---STRFSSNDVKLAKAI 103 (197)
T ss_pred CCceEEeCCCCCccc-------CCHHHHHHH-h--------------Ccc--CcCEEEEE-e---CCCCCHHHHHHHHHH
Confidence 468999999999731 123455554 1 111 34566666 3 235788888887766
Q ss_pred cCc-ceEEeeeecCCCCCHHH
Q psy8479 616 DSK-VNIIPIIAKADTISKSE 635 (650)
Q Consensus 616 ~~~-vnviPvIaKaD~lt~~e 635 (650)
... ..++-|+.|+|.+.+.+
T Consensus 104 ~~~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 104 QCMGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred HHhCCCEEEEEecccchhhhh
Confidence 643 46789999999987655
No 280
>KOG0057|consensus
Probab=94.63 E-value=0.014 Score=66.26 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=29.8
Q ss_pred CccCCCCCCcccccccccCCCCceee---------cCCCCCChhhHhhhhhCc
Q psy8479 86 CWVNTRTPPPNFLEKSWNFIPGKAYK---------PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 86 ~~vG~~~lp~Q~~rk~~~~k~g~~Fn---------VG~SGvGKSTlINtLf~~ 129 (650)
.-|+|.-.|++. .. +|+.|+ ||.+|+||||+||+||.-
T Consensus 355 ~dV~f~y~~k~~---iL---~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 355 DDVHFSYGPKRK---VL---KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred EeeEEEeCCCCc---ee---cceeEEecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456777777651 12 599998 999999999999999973
No 281
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.63 E-value=0.012 Score=54.13 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+|||||+++|++..
T Consensus 17 ~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred EccCCCccccceeeecccc
Confidence 9999999999999999963
No 282
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=94.57 E-value=0.039 Score=52.74 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...+++|||||+++- . .....|+. ..|+++|+ +.+ .++....+.++++.
T Consensus 61 ~~~~~liDtpG~~~~------~-~~~~~~~~----------------------~~d~~i~v-~d~-~~~~~~~~~~~~~~ 109 (189)
T cd00881 61 DRRVNFIDTPGHEDF------S-SEVIRGLS----------------------VSDGAILV-VDA-NEGVQPQTREHLRI 109 (189)
T ss_pred CEEEEEEeCCCcHHH------H-HHHHHHHH----------------------hcCEEEEE-EEC-CCCCcHHHHHHHHH
Confidence 578999999998751 1 11111111 25678888 544 34555666666655
Q ss_pred cc-CcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 615 LD-SKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 615 l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
+. ....++-|+.|+|.+.++++......+.+.+
T Consensus 110 ~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 110 AREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 54 4788999999999999777766666665544
No 283
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=94.55 E-value=0.51 Score=53.50 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=53.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc--cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH---CCCcEEeCCC-Cchh
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD--SKVNIIPIIAKADTISKSELQKFKTNIMTELTS---NGVHIYEFPT-DDET 270 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~--~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~---~~I~if~f~~-d~~~ 270 (650)
++++++++.+...++++.-.+.+..+. ..-++|+||+|+|....+++......|++.+.. .+..++.... ..+.
T Consensus 141 ~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n 220 (460)
T PTZ00327 141 MDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN 220 (460)
T ss_pred CCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence 578888888763334544344444333 223789999999999888887777888777654 3455665542 2233
Q ss_pred HHHHHHHhhhc
Q psy8479 271 MSDVNAAMTIF 281 (650)
Q Consensus 271 ~~~~~~~~~~~ 281 (650)
+..+...+...
T Consensus 221 I~~Ll~~L~~~ 231 (460)
T PTZ00327 221 IDVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHhh
Confidence 44555555533
No 284
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=94.50 E-value=0.25 Score=55.74 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=42.2
Q ss_pred eeeEEEEEEcCCCCCC-------CcchHHHHHHhcc-CC-CeeeeeecccC----CCHHHHHHHHHHHHHHHHHCCC
Q psy8479 196 RIHVCLYFICPTGHGL-------KSLDLVCMKKLDS-KV-NIIPIIAKADT----ISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 196 RVH~cLYfI~ps~h~L-------k~lDI~~mk~L~~-~v-nvIPVItKAD~----Lt~~El~~~K~~I~~~L~~~~I 259 (650)
..++++..+.++ .+. ...-.+.+..+.. .+ .+|.+|+|.|. .++..+...++.|+..|...+.
T Consensus 108 ~aD~ailVVda~-~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~ 183 (446)
T PTZ00141 108 QADVAILVVAST-AGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGY 183 (446)
T ss_pred hcCEEEEEEEcC-CCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCC
Confidence 356788888865 343 2444555555553 55 47899999994 2456777788888888876543
No 285
>KOG2423|consensus
Probab=94.40 E-value=0.023 Score=62.15 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=39.7
Q ss_pred ccCCCCCCcccccccccCCCCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCc-----EEEEEEEEEeeCCce
Q psy8479 87 WVNTRTPPPNFLEKSWNFIPGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPS-----VKLKAHTYELQENNV 157 (650)
Q Consensus 87 ~vG~~~lp~Q~~rk~~~~k~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T-----~~I~~~~~~l~e~g~ 157 (650)
.-.+-+|..|+-+-... |+.+..- ||-.|+||||+||||-..++... .+-+|.| +.+....|-|+..|+
T Consensus 288 KgalI~llRQf~kLh~d-kkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSD-KKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred hhHHHHHHHHHHhhccC-ccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHhceeEecCCCc
Confidence 33344555555443322 2333322 99999999999999998876553 2223322 223344566666664
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.32 E-value=0.16 Score=60.55 Aligned_cols=41 Identities=15% Similarity=0.374 Sum_probs=31.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHh-ccCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKL-DSKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L-~~~vnvIPVItKAD~L 238 (650)
.+++++++... .++...+..+++.+ ....++|.|++|.|..
T Consensus 110 aD~~llVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 110 VDGAIVVVCAV-EGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred cCEEEEEEecC-CCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 47888888754 46777777777776 3567889999999986
No 287
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.29 E-value=0.022 Score=58.51 Aligned_cols=18 Identities=39% Similarity=0.390 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||+|.|-+-
T Consensus 37 ~GpSGSGKSTLLniig~l 54 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999874
No 288
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.12 E-value=0.016 Score=53.46 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=35.4
Q ss_pred CCceeeEeeecCCCcccCCcchHHHHHhccCcceEEeeeecCCCCCHHHH
Q psy8479 587 TRLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSEL 636 (650)
Q Consensus 587 ~rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~~vnviPvIaKaD~lt~~e~ 636 (650)
.++|+++|+ +.++. .....+..+++. ....++|-|+.|+|..+..+.
T Consensus 79 ~~~~~~v~v-~d~~~-~~~~~~~~~~~~-~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 79 EEADLVLFV-IDASR-GLDEEDLEILEL-PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred hhCCEEEEE-EECCC-CCCHHHHHHHHh-hcCCCEEEEEEchhcCCcccc
Confidence 368999999 55542 456667777776 567899999999999876654
No 289
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.07 E-value=0.022 Score=51.16 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=46.1
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..+.++||||+++.-.....- ..+..|++. + .++|+++|+ +... +.+...+.++++.|
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~-----------------~--~~~d~ii~v-v~~~-~~~~~~~~~~~~~l 104 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDG-KEIRKFLEQ-----------------I--SKSDLIIYV-VDAS-NPITEDDKNILREL 104 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHH-HHHHHHHHH-----------------H--CTESEEEEE-EETT-SHSHHHHHHHHHHH
T ss_pred eeEEEEeCCCCcccchhhHHH-HHHHHHHHH-----------------H--HHCCEEEEE-EECC-CCCCHHHHHHHHHH
Confidence 445799999998853322211 122233333 1 346889999 5543 35667788999999
Q ss_pred cCcceEEeeeec
Q psy8479 616 DSKVNIIPIIAK 627 (650)
Q Consensus 616 ~~~vnviPvIaK 627 (650)
....++|.|+.|
T Consensus 105 ~~~~~~i~v~NK 116 (116)
T PF01926_consen 105 KNKKPIILVLNK 116 (116)
T ss_dssp HTTSEEEEEEES
T ss_pred hcCCCEEEEEcC
Confidence 888899999876
No 290
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.06 E-value=0.017 Score=58.26 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=50.6
Q ss_pred cccccccCCCCCccccc-ccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 536 LGRGIVRSPGERKEKNA-EFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~-~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
..++|||||||++.-.. .... ..|..++.. ....+||+||. ++.. .+..-|..+++.
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~-~~i~~~l~~------------------~~~g~ha~llV-i~~~--r~t~~~~~~l~~ 106 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEII-REIKRCLSL------------------CSPGPHAFLLV-IPLG--RFTEEDREVLEL 106 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHH-HHHHHHHHH------------------TTT-ESEEEEE-EETT--B-SHHHHHHHHH
T ss_pred eEEEEEeCCCCCCCcccHHHHH-HHHHHHHHh------------------ccCCCeEEEEE-EecC--cchHHHHHHHHH
Confidence 67899999999885321 1122 234444432 12369999998 6443 777778888777
Q ss_pred ccC------cceEEeeeecCCCCCHHHHH
Q psy8479 615 LDS------KVNIIPIIAKADTISKSELQ 637 (650)
Q Consensus 615 l~~------~vnviPvIaKaD~lt~~e~~ 637 (650)
|.. .-|+|-|+..+|.+.+..+.
T Consensus 107 l~~~FG~~~~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 107 LQEIFGEEIWKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp HHHHHCGGGGGGEEEEEEEGGGGTTTTHH
T ss_pred HHHHccHHHHhHhhHHhhhccccccccHH
Confidence 663 34788899999999987643
No 291
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.028 Score=58.34 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.||+|||||+|.+.|-.
T Consensus 35 lGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999954
No 292
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=93.98 E-value=0.044 Score=57.90 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||..|+|||||+|+|++.+.
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~ 23 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGA 23 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCC
Confidence 89999999999999999876
No 293
>KOG3886|consensus
Probab=93.93 E-value=0.13 Score=53.12 Aligned_cols=122 Identities=17% Similarity=0.294 Sum_probs=72.7
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHH-HHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQ-EEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~-eE~ 183 (650)
+-+ .|+||+||||+=-.+|. +..+.....+|.|+.|....+-.-+ ++.|+ -..-+..+ ++|+. ++.
T Consensus 7 vlL-MGrsGsGKsSmrsiiF~-ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fm-------en~~~~q~d 76 (295)
T KOG3886|consen 7 VLL-MGRSGSGKSSMRSIIFA-NYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFM-------ENYLSSQED 76 (295)
T ss_pred EEE-eccCCCCccccchhhhh-hhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHH-------HHHHhhcch
Confidence 345 99999999998877774 3444445567777777543332222 23444 11112233 45565 566
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHH----HHHHhcc---CCCeeeeeecccCCCHHHHHHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLV----CMKKLDS---KVNIIPIIAKADTISKSELQKFKT 248 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~----~mk~L~~---~vnvIPVItKAD~Lt~~El~~~K~ 248 (650)
++-|+ |.+.+|+...+...+. -|+. +++.|-+ ..-+.-.+.|.|.+...+....-+
T Consensus 77 ~iF~n--------V~vli~vFDves~e~~-~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~ 139 (295)
T KOG3886|consen 77 NIFRN--------VQVLIYVFDVESREME-KDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQ 139 (295)
T ss_pred hhhee--------heeeeeeeeccchhhh-hhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHH
Confidence 66565 5688999987655443 2433 3333433 336777899999998777655333
No 294
>COG2229 Predicted GTPase [General function prediction only]
Probab=93.89 E-value=0.36 Score=48.03 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCC---CCCC--C---CCcEEEEEEEEEeeC-Cceeec--------chhHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFEST---PSPH--S---LPSVKLKAHTYELQE-NNVKLK--------EDSFKSIVDY 170 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~---~s~~--~---~~T~~I~~~~~~l~e-~g~~L~--------~~~w~~Ii~y 170 (650)
+.+ .|..|+||||||.+|.......+ .++. . ..|+-+..-...+.+ .++.|. ...|.-+.
T Consensus 13 Ivv-~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~-- 89 (187)
T COG2229 13 IVV-IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILS-- 89 (187)
T ss_pred EEE-EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHh--
Confidence 344 89999999999999999875433 1111 1 134444444445555 567765 12222222
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC--CCeeeeeecccCCCHHHHHHHHH
Q psy8479 171 IDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK--VNIIPIIAKADTISKSELQKFKT 248 (650)
Q Consensus 171 I~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~--vnvIPVItKAD~Lt~~El~~~K~ 248 (650)
+. . .-+.++..+......-...+|..+..+ .+++..++|-|..+.---.
T Consensus 90 ---------~g------a----------~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe---- 140 (187)
T COG2229 90 ---------RG------A----------VGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPE---- 140 (187)
T ss_pred ---------CC------c----------ceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHH----
Confidence 11 1 122233333345554668888888753 6999999998866442222
Q ss_pred HHHHHHHHC--CCcEEeC
Q psy8479 249 NIMTELTSN--GVHIYEF 264 (650)
Q Consensus 249 ~I~~~L~~~--~I~if~f 264 (650)
.|++.|... .+.++.-
T Consensus 141 ~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 141 KIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHHHhccCCCceeee
Confidence 344455444 4555543
No 295
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.74 E-value=0.025 Score=57.68 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.||+||||||.+|-+-.
T Consensus 34 iGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred ECCCCCCHHHHHHHHHCCc
Confidence 9999999999999997743
No 296
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.74 E-value=0.083 Score=48.69 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.3
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhccCc-ceEEeeeecCCCC-CHHHHHHHHHHHHhh
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLDSK-VNIIPIIAKADTI-SKSELQKFKVSKTRV 646 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~~-vnviPvIaKaD~l-t~~e~~~~K~~i~~~ 646 (650)
.+|+++|. +.++. .....+..+++.+... ..++.|+.|+|.. ...++..+...+...
T Consensus 82 ~~d~i~~v-~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (168)
T cd04163 82 DVDLVLFV-VDASE-PIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL 140 (168)
T ss_pred hCCEEEEE-EECCC-ccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc
Confidence 36778888 65543 3566677777777654 8899999999999 677777777776554
No 297
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.72 E-value=0.034 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCceeecCCCCCChhhHhhhhhCcCC
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~~~ 131 (650)
.+|.|-+|.||.||||||+.|++...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46666699999999999999998643
No 298
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.68 E-value=0.35 Score=58.77 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=33.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
.++|+.+|... .++......+++.+. .+.++|.+|+|.|.+.
T Consensus 122 ~D~ailVvda~-~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 122 TDGALVVVDCI-EGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred cCEEEEEEECC-CCCcccHHHHHHHHHHCCCCEEEEEECCcccc
Confidence 46788888754 688888888888776 4779999999999983
No 299
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=93.61 E-value=0.093 Score=49.73 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=18.2
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.+|+|||||||.|++...
T Consensus 107 ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 107 VGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred ECCCCCCHHHHHHHHhCCCc
Confidence 99999999999999998653
No 300
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.42 Score=54.59 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=67.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCC-------CCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPH-------SLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~-------~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~ 184 (650)
||.+|+||||||.+|..+--..+-+.- .+++..|+ + -+|-..|-.+|+-.
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiT----f---------lEcp~Dl~~miDva---------- 131 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRIT----F---------LECPSDLHQMIDVA---------- 131 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEE----E---------EeChHHHHHHHhHH----------
Confidence 999999999999999976322221111 12222221 1 22444554444322
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC-C-CeeeeeecccCC-CHHHHHHHHHHHHHHHHH---CC
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK-V-NIIPIIAKADTI-SKSELQKFKTNIMTELTS---NG 258 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~-v-nvIPVItKAD~L-t~~El~~~K~~I~~~L~~---~~ 258 (650)
++- +++|.+|..+ -|+.-.-.+||.-|... . -|+-|+|..|.+ +++-|...|++++..+=. .|
T Consensus 132 ------KIa----DLVlLlIdgn-fGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 132 ------KIA----DLVLLLIDGN-FGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred ------Hhh----heeEEEeccc-cCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence 121 3467777643 34443334444444432 2 688899999988 456677777755544322 47
Q ss_pred CcEEeCC
Q psy8479 259 VHIYEFP 265 (650)
Q Consensus 259 I~if~f~ 265 (650)
+++|-..
T Consensus 201 aKlFyls 207 (1077)
T COG5192 201 AKLFYLS 207 (1077)
T ss_pred ceEEEec
Confidence 7777553
No 301
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=93.49 E-value=0.11 Score=50.57 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=52.5
Q ss_pred cccccccCCCCCccccccc---ccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHH
Q psy8479 536 LGRGIVRSPGERKEKNAEF---FSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCM 612 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~---~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~m 612 (650)
..++||||||++.+..... .|..-+..|+.. . .++++++++ +.. +......+.+++
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~v-~d~-~~~~~~~~~~i~ 128 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRT------------------R-ENLKGVVLL-IDS-RHPLKELDLQMI 128 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHh------------------C-ccceEEEEE-Eec-CCCCCHHHHHHH
Confidence 6799999999987543221 111111223322 0 134556665 322 334555665555
Q ss_pred HhccC-cceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 613 KKLDS-KVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 613 k~l~~-~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
+.+.. ...++.|+.|+|.+...+.+.....+.+.+
T Consensus 129 ~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l 164 (196)
T PRK00454 129 EWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKAL 164 (196)
T ss_pred HHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 55542 356789999999999888766555554443
No 302
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.41 E-value=0.041 Score=54.85 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 303
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.15 E-value=0.045 Score=55.01 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 43 ~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 304
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.10 E-value=0.049 Score=54.67 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.06 E-value=0.23 Score=51.40 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=16.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|..|+|||||+++|..-
T Consensus 2 iGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 699999999999999863
No 306
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.05 E-value=0.054 Score=44.65 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.3
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
.|.+|+||||++.++.-
T Consensus 29 ~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQT 45 (62)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999988753
No 307
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.04 E-value=0.048 Score=54.84 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 308
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.04 E-value=0.052 Score=54.12 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 32 IGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 309
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.01 E-value=0.051 Score=53.88 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 30 ~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLL 47 (206)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 310
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.01 E-value=0.049 Score=53.73 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.9
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.||+|||||+|+|+.
T Consensus 27 ~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 99999999999999963
No 311
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.046 Score=54.61 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 312
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.88 E-value=0.051 Score=55.24 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 313
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.88 E-value=0.037 Score=55.67 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 314
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.86 E-value=0.054 Score=54.08 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 34 ~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 315
>PTZ00258 GTP-binding protein; Provisional
Probab=92.86 E-value=0.12 Score=57.42 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.5
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||..|+|||||+|+|.+.+.
T Consensus 27 VG~PNvGKSTLfnaLt~~~~ 46 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQV 46 (390)
T ss_pred ECCCCCChHHHHHHHhcCcc
Confidence 99999999999999988764
No 316
>KOG0054|consensus
Probab=92.82 E-value=0.049 Score=68.34 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.9
Q ss_pred CCceee---------cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK---------PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn---------VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+ |||+|+|||||+++||.-
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 466666 999999999999999984
No 317
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.81 E-value=0.058 Score=53.88 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 31 ~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 31 VGPNGAGKSTLLKAILGL 48 (213)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 318
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.81 E-value=0.052 Score=53.98 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 32 TGKNGAGKTTLAKILAGL 49 (205)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 319
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.80 E-value=0.056 Score=55.08 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRL 51 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 320
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.76 E-value=0.057 Score=54.71 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 37 IGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 321
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.055 Score=53.96 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 32 LGPNGAGKTTTIRMILGI 49 (210)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 322
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.72 E-value=0.047 Score=54.51 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 323
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.69 E-value=0.059 Score=55.83 Aligned_cols=19 Identities=42% Similarity=0.391 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
||+||+|||||.++|.+-.
T Consensus 39 vGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 39 VGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EcCCCCCHHHHHHHHhccc
Confidence 9999999999999999954
No 324
>PRK00089 era GTPase Era; Reviewed
Probab=92.62 E-value=0.18 Score=52.99 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=55.5
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..+.+|||||+.+.... +...+...... .+ ..+|+++|+ +..+. .+...+..+++.+
T Consensus 53 ~qi~~iDTPG~~~~~~~---l~~~~~~~~~~----------------~~--~~~D~il~v-vd~~~-~~~~~~~~i~~~l 109 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRA---LNRAMNKAAWS----------------SL--KDVDLVLFV-VDADE-KIGPGDEFILEKL 109 (292)
T ss_pred ceEEEEECCCCCCchhH---HHHHHHHHHHH----------------HH--hcCCEEEEE-EeCCC-CCChhHHHHHHHH
Confidence 67999999999774321 10111111111 01 137889999 54443 5667777777777
Q ss_pred cC-cceEEeeeecCCCC-CHHHHHHHHHHHHh
Q psy8479 616 DS-KVNIIPIIAKADTI-SKSELQKFKVSKTR 645 (650)
Q Consensus 616 ~~-~vnviPvIaKaD~l-t~~e~~~~K~~i~~ 645 (650)
.. .+.+|-|+.|+|.+ ..+++..+.+.+.+
T Consensus 110 ~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~ 141 (292)
T PRK00089 110 KKVKTPVILVLNKIDLVKDKEELLPLLEELSE 141 (292)
T ss_pred hhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh
Confidence 64 57899999999999 66777666555544
No 325
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.61 E-value=0.064 Score=52.70 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 24 ~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGL 41 (190)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 326
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.59 E-value=0.057 Score=54.47 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 19 ~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 327
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.53 E-value=0.11 Score=47.93 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=47.0
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..+++|||||+++... .+. ..+.+.... .+ .++|+++|. +.+ .++....+..+++.+
T Consensus 45 ~~~~i~DtpG~~~~~~--~~~-~~~~~~~~~----------------~~--~~~d~ii~v-~d~-~~~~~~~~~~~~~~~ 101 (157)
T cd01894 45 REFILIDTGGIEPDDE--GIS-KEIREQAEL----------------AI--EEADVILFV-VDG-REGLTPADEEIAKYL 101 (157)
T ss_pred eEEEEEECCCCCCchh--HHH-HHHHHHHHH----------------HH--HhCCEEEEE-Eec-cccCCccHHHHHHHH
Confidence 6789999999998533 111 111111111 01 125678888 544 344555666555544
Q ss_pred cC-cceEEeeeecCCCCCHHHH
Q psy8479 616 DS-KVNIIPIIAKADTISKSEL 636 (650)
Q Consensus 616 ~~-~vnviPvIaKaD~lt~~e~ 636 (650)
.. ...+|.|+.|+|.....+.
T Consensus 102 ~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 102 RKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred HhcCCCEEEEEECcccCChHHH
Confidence 32 4789999999999887665
No 328
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.52 E-value=0.063 Score=53.46 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 32 LGPNGAGKTTTMKIILGL 49 (208)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.52 E-value=0.071 Score=50.47 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+|+|.+.
T Consensus 32 ~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999986
No 330
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.50 E-value=0.058 Score=54.45 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999986
No 331
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.45 E-value=0.88 Score=54.50 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=31.3
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHh-ccCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKL-DSKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L-~~~vnvIPVItKAD~L 238 (650)
+++|++++... .++...+..+++.+ ....+.|.+|+|.|..
T Consensus 111 ~D~avlVvda~-~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 111 VDGAIVVVDAV-EGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cCEEEEEEECC-CCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 47888888764 56777777777763 4567889999999976
No 332
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.45 E-value=0.056 Score=55.57 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|+.|+|||||++||++.-
T Consensus 35 lG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 35 LGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999963
No 333
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.45 E-value=0.068 Score=54.08 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 334
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.44 E-value=0.068 Score=53.77 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 37 VGESGSGKSTLARAILGL 54 (228)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 335
>KOG0092|consensus
Probab=92.42 E-value=1 Score=45.26 Aligned_cols=147 Identities=19% Similarity=0.338 Sum_probs=73.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+||||||||=-.....+.....++++.. +-..++.+.+..+++- .+.+..+.
T Consensus 11 LG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaa--F~tktv~~~~~~ikfeIWDTAGQERy~sla----------------- 71 (200)
T KOG0092|consen 11 LGDSGVGKSSLVLRFVKDQFHENIEPTIGAA--FLTKTVTVDDNTIKFEIWDTAGQERYHSLA----------------- 71 (200)
T ss_pred ECCCCCCchhhhhhhhhCccccccccccccE--EEEEEEEeCCcEEEEEEEEcCCcccccccc-----------------
Confidence 9999999999998888777766544444431 1122344455444433 11222222
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCC----CeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKV----NIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~v----nvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
.. -+.+...-++.|=|... ..+..+ ...++.|+.++ .+-.|-+|+|.+...+. -.+........++.-+
T Consensus 72 -pM--YyRgA~AAivvYDit~~-~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 72 -PM--YYRGANAAIVVYDITDE-ESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAESQGLLF 144 (200)
T ss_pred -cc--eecCCcEEEEEEecccH-HHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHhcCCEE
Confidence 00 12333333455544311 112211 33555666443 34447889998863322 2233344445566666
Q ss_pred EeCCC-CchhHHHHHHHhhhccCCCC
Q psy8479 262 YEFPT-DDETMSDVNAAMTIFSSIPC 286 (650)
Q Consensus 262 f~f~~-d~~~~~~~~~~~~~~~~~P~ 286 (650)
|.-.. ......++...+... +|+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~--lp~ 168 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEK--LPC 168 (200)
T ss_pred EEEecccccCHHHHHHHHHHh--ccC
Confidence 64432 223455555555555 663
No 336
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=92.42 E-value=0.2 Score=51.23 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=43.7
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhcc-CcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
..|+++++ +.. .+++.+.|.+++..+. ....+|.|+.|+|.+...++...+..+.+.|.
T Consensus 109 ~~D~~llV-vda-~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 109 APDYAMLV-VAA-NAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILK 168 (224)
T ss_pred CCCEEEEE-EEC-CCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhc
Confidence 46788888 533 3567888877766554 33568999999999998888887777776654
No 337
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.38 E-value=0.066 Score=55.03 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.|.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 338
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.34 E-value=0.073 Score=54.16 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 17 ~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGL 34 (230)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999986
No 339
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.33 E-value=0.05 Score=55.42 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|++.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 340
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.30 E-value=0.037 Score=66.54 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=6.2
Q ss_pred hhHhhhhhCcC
Q psy8479 120 STLMDSLFNTS 130 (650)
Q Consensus 120 STlINtLf~~~ 130 (650)
..++|.|++.+
T Consensus 288 ~~v~n~l~~ed 298 (784)
T PF04931_consen 288 RCVDNQLFSED 298 (784)
T ss_pred HHHHHHhhccc
Confidence 45666666543
No 341
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.26 E-value=0.071 Score=54.19 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+-
T Consensus 33 ~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 342
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.25 E-value=0.067 Score=54.18 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASL 56 (225)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 343
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.21 E-value=0.08 Score=53.76 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 18 ~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGL 35 (230)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999995
No 344
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.21 E-value=0.068 Score=54.31 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999995
No 345
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.20 E-value=0.077 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=19.4
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+| .+- +|.+|+|||||+++|.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 55 333 999999999999999984
No 346
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.19 E-value=0.06 Score=55.97 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 43 IGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999995
No 347
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.062 Score=56.08 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 56 ~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 56 MGLSGSGKSTLLRCINRL 73 (269)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 348
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.11 E-value=0.076 Score=51.54 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 32 ~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 32 LGPNGAGKTTLIKIILGL 49 (173)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 349
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.10 E-value=0.079 Score=54.29 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 35 ~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLL 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 350
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.075 Score=54.21 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 351
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=92.07 E-value=0.25 Score=44.67 Aligned_cols=81 Identities=7% Similarity=-0.073 Sum_probs=50.4
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHH-HHH
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLV-CMK 613 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~-~mk 613 (650)
...+++|||||+++.......+...+..++ ...|+++|+ +.++. .....+.. ++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~----------------------~~~d~il~v-~~~~~-~~~~~~~~~~~~ 99 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL----------------------ERADLILFV-VDADL-RADEEEEKLLEL 99 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH----------------------HhCCEEEEE-EeCCC-CCCHHHHHHHHH
Confidence 578999999999985332221100111111 125678888 54442 33333333 555
Q ss_pred hccCcceEEeeeecCCCCCHHHHHHH
Q psy8479 614 KLDSKVNIIPIIAKADTISKSELQKF 639 (650)
Q Consensus 614 ~l~~~vnviPvIaKaD~lt~~e~~~~ 639 (650)
.......+|-|+.|+|.+...+....
T Consensus 100 ~~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 100 LRERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred HHhcCCeEEEEEEccccCChhhHHHH
Confidence 55678889999999999998877665
No 352
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.07 E-value=0.061 Score=57.42 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||||+.|++.
T Consensus 39 lGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 39 LGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 353
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.073 Score=54.60 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 35 ~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 354
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.04 E-value=0.068 Score=54.23 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+-
T Consensus 54 ~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 54 IGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 355
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.99 E-value=0.076 Score=54.88 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 36 IGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999995
No 356
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.96 E-value=0.088 Score=52.73 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 36 ~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 36 VGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 357
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=91.96 E-value=0.08 Score=54.31 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 37 IGPSGSGKSTLLRSINRM 54 (252)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 358
>PRK13768 GTPase; Provisional
Probab=91.95 E-value=0.1 Score=54.36 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=55.1
Q ss_pred ccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc-
Q psy8479 537 GRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL- 615 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l- 615 (650)
..-+|||||.-+..-....+ ..+.+++.. ..-.|++|+ +.. .++.++.|+..+..+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~-~~~~~~l~~--------------------~~~~~ii~l-iD~-~~~~~~~d~~~~~~l~ 154 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESG-RKLVERLSG--------------------SSKSVVVFL-IDA-VLAKTPSDFVSLLLLA 154 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHH-HHHHHHHHh--------------------cCCeEEEEE-ech-HHhCCHHHHHHHHHHH
Confidence 56799999975533223334 233333332 112344554 533 456778887776654
Q ss_pred -----cCcceEEeeeecCCCCCHHHHHHHHHHHH
Q psy8479 616 -----DSKVNIIPIIAKADTISKSELQKFKVSKT 644 (650)
Q Consensus 616 -----~~~vnviPvIaKaD~lt~~e~~~~K~~i~ 644 (650)
....++|+|+.|+|.++..++..+++.+.
T Consensus 155 ~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 155 LSVQLRLGLPQIPVLNKADLLSEEELERILKWLE 188 (253)
T ss_pred HHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh
Confidence 46789999999999999999888877665
No 359
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.94 E-value=0.082 Score=53.41 Aligned_cols=18 Identities=44% Similarity=0.464 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|++.
T Consensus 42 ~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 42 IGESGSGKSTLLAILAGL 59 (228)
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 999999999999999995
No 360
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.94 E-value=0.079 Score=53.88 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.|.
T Consensus 35 ~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 35 VGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EeCCCCCHHHHHHHHhcc
Confidence 999999999999999996
No 361
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.91 E-value=0.083 Score=53.22 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 40 ~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 40 SGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 362
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.91 E-value=0.09 Score=50.72 Aligned_cols=18 Identities=50% Similarity=0.501 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 32 LGENGAGKSTLMKILSGL 49 (163)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 363
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=91.89 E-value=0.25 Score=46.56 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=30.5
Q ss_pred ceeeEeeecCCCcccCCcch--HHH---HHhccCcceEEeeeecCCCCCHHHHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLD--LVC---MKKLDSKVNIIPIIAKADTISKSELQK 638 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D--i~~---mk~l~~~vnviPvIaKaD~lt~~e~~~ 638 (650)
.+|++|+ +.++.+....++ ..+ ++......++|.|+.|+|.....++..
T Consensus 80 ~d~~l~v-~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 80 RAAVLFL-FDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred cCcEEEE-EeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH
Confidence 3678888 556543221211 123 333334689999999999998777654
No 364
>PLN00043 elongation factor 1-alpha; Provisional
Probab=91.89 E-value=1.3 Score=50.07 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred eeeEEEEEEcCCCCCCC------cchHHHHHHhc-cCC-CeeeeeecccCCC----HHHHHHHHHHHHHHHHHCCC
Q psy8479 196 RIHVCLYFICPTGHGLK------SLDLVCMKKLD-SKV-NIIPIIAKADTIS----KSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk------~lDI~~mk~L~-~~v-nvIPVItKAD~Lt----~~El~~~K~~I~~~L~~~~I 259 (650)
..++|+.++..+...+. ..=.+.+..+. ..+ ++|.+++|.|... ...+...++.++..|+..+.
T Consensus 108 ~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 108 QADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred hccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 35788888887642221 11122222222 356 5788999999753 44455667777777776653
No 365
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.88 E-value=0.09 Score=52.73 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 366
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.88 E-value=0.088 Score=53.15 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 35 VGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999986
No 367
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.86 E-value=0.086 Score=52.08 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 999999999999999985
No 368
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.84 E-value=0.087 Score=53.84 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=17.3
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
+| +|.||.|||||+.+|=.-
T Consensus 37 Al-IGPSGcGKST~LR~lNRm 56 (253)
T COG1117 37 AL-IGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EE-ECCCCcCHHHHHHHHHhh
Confidence 56 999999999999998653
No 369
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.84 E-value=0.092 Score=52.68 Aligned_cols=18 Identities=39% Similarity=0.386 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 36 ~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 370
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.83 E-value=0.085 Score=51.56 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 31 ~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 371
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.81 E-value=0.086 Score=54.28 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 39 IGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 372
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.80 E-value=0.083 Score=53.73 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999996
No 373
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.096 Score=51.08 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 374
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.78 E-value=0.084 Score=54.94 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 53 ~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 53 IGPSGCGKSTFLRSINRM 70 (268)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 999999999999999984
No 375
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.77 E-value=0.095 Score=52.48 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGI 52 (216)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 376
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.76 E-value=0.085 Score=52.23 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGL 49 (198)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 377
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.74 E-value=0.094 Score=54.70 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGL 50 (271)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 378
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.063 Score=54.62 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 37 IGANGAGKTTLLGTLCGD 54 (237)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.70 E-value=0.097 Score=52.20 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 380
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.68 E-value=0.076 Score=54.46 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 34 IGASGCGKSTFLRCFNRM 51 (246)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999984
No 381
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.63 E-value=0.086 Score=55.59 Aligned_cols=18 Identities=33% Similarity=0.291 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 382
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.62 E-value=0.089 Score=53.70 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 34 ~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 383
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=91.62 E-value=0.5 Score=51.00 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=33.1
Q ss_pred CceeeEEEEEEcCCCCCCCcchHHHHHHhcc---CCCeeeeeecccCCCHHHHHHHHHHH
Q psy8479 194 DNRIHVCLYFICPTGHGLKSLDLVCMKKLDS---KVNIIPIIAKADTISKSELQKFKTNI 250 (650)
Q Consensus 194 D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~El~~~K~~I 250 (650)
+-|||-+-.+|.. ..+--| ++..|.. .+|-|-|++|.|.+..+++..+.+..
T Consensus 210 Ey~I~nA~V~Ir~---dvTlDd--~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~ 264 (365)
T COG1163 210 EYRIHNADVLIRE---DVTLDD--LIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP 264 (365)
T ss_pred HhCcccceEEEec---CCcHHH--HHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc
Confidence 3467766666652 233333 3455542 34888899999999988877666543
No 384
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.62 E-value=0.089 Score=53.76 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 33 IGPSGSGKTTTMKMINRL 50 (242)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 385
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.59 E-value=0.076 Score=55.17 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 48 ~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 48 IGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 386
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.59 E-value=0.095 Score=54.73 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 45 ~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 45 IGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 387
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.56 E-value=0.074 Score=54.27 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 388
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.55 E-value=0.095 Score=53.74 Aligned_cols=18 Identities=44% Similarity=0.469 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 33 IGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 389
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.52 E-value=0.09 Score=57.13 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.||+|||||++.+.|-.
T Consensus 35 lGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999953
No 390
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.51 E-value=0.094 Score=47.88 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.8
Q ss_pred ceeecCCCCCChhhHhhhhh
Q psy8479 108 KAYKPCETGLGKSTLMDSLF 127 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf 127 (650)
+.+ +|.||+|||||++.|.
T Consensus 18 v~I-~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLI-TGDSGIGKTELALELI 36 (107)
T ss_pred EEE-EcCCCCCHHHHHHHhh
Confidence 444 9999999999999986
No 391
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.50 E-value=0.089 Score=55.99 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+||||||++|.+.-
T Consensus 37 lG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 9999999999999999963
No 392
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.49 E-value=0.1 Score=52.02 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 33 EGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 393
>PRK01889 GTPase RsgA; Reviewed
Probab=91.49 E-value=0.087 Score=57.62 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.1
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~ 132 (650)
+.| +|.||+|||||||+|++....
T Consensus 198 ~~l-vG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 198 VAL-LGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred EEE-ECCCCccHHHHHHHHHHhccc
Confidence 344 999999999999999986543
No 394
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.48 E-value=0.062 Score=55.88 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 39 ~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.47 E-value=0.1 Score=53.70 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 36 IGPSGCGKSTLLRALNRM 53 (251)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 396
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.46 E-value=0.09 Score=54.03 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 37 IGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 397
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=91.45 E-value=0.1 Score=53.84 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 35 VGGSGSGKSLTCAAALGI 52 (254)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999996
No 398
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.44 E-value=0.095 Score=53.90 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 32 IGPSGSGKSTILRILMTL 49 (252)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 399
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.44 E-value=0.11 Score=51.86 Aligned_cols=18 Identities=50% Similarity=0.588 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 40 VGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 400
>COG0218 Predicted GTPase [General function prediction only]
Probab=91.42 E-value=0.26 Score=49.77 Aligned_cols=89 Identities=21% Similarity=0.126 Sum_probs=65.0
Q ss_pred cccccCCCCCccccc---ccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 538 RGIVRSPGERKEKNA---EFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 538 ltivdtpGfg~~~~~---~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
+.+||-||||=+-.. ..-|..-|..||+. +-+ +-.++.+++ ..|.++.+|.+++.-
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~-----------R~~--------L~~vvlliD--~r~~~~~~D~em~~~ 130 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEK-----------RAN--------LKGVVLLID--ARHPPKDLDREMIEF 130 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhh-----------chh--------heEEEEEEE--CCCCCcHHHHHHHHH
Confidence 889999999988553 34565778888887 212 222333323 478899999999887
Q ss_pred cc-CcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 615 LD-SKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 615 l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
|. ....++-|..|+|-++..|.......|.+.|
T Consensus 131 l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 131 LLELGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHcCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 76 5678889999999999998877666666543
No 401
>PRK14845 translation initiation factor IF-2; Provisional
Probab=91.41 E-value=1.3 Score=54.90 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.0
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
.|++++++..+ .++++...+.++.+.. .+++|.|++|+|...
T Consensus 550 aDivlLVVDa~-~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 550 ADLAVLVVDIN-EGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CCEEEEEEECc-ccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 57888888765 5788888888888774 579999999999863
No 402
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.40 E-value=0.11 Score=52.15 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++.
T Consensus 37 ~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999986
No 403
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.39 E-value=0.11 Score=51.97 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999984
No 404
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.38 E-value=0.094 Score=51.09 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 34 ~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 405
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.091 Score=56.67 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||+++|.+.
T Consensus 39 vG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 39 VGESGSGKSVSSLAIMGL 56 (326)
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 999999999999999985
No 406
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=91.35 E-value=0.1 Score=54.11 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 45 ~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 407
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.35 E-value=0.099 Score=53.51 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|++.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 35 VGPSGAGKSTLIKLINRL 52 (241)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 408
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=91.32 E-value=0.1 Score=52.54 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 32 LGPNGAGKSTLLKMITGI 49 (223)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 409
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.31 E-value=0.11 Score=52.50 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+.-
T Consensus 39 ~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 39 LGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 9999999999999999863
No 410
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.29 E-value=0.1 Score=53.60 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.|-
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 36 IGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred ECCCCCCHHHHHHHHhhc
Confidence 999999999999999995
No 411
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.29 E-value=0.11 Score=50.27 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 33 TGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 412
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.1 Score=53.54 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 35 IGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999984
No 413
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.1 Score=53.73 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 38 IGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 414
>KOG0080|consensus
Probab=91.27 E-value=0.26 Score=48.14 Aligned_cols=127 Identities=19% Similarity=0.275 Sum_probs=68.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|+|||||||||-......+-.....+++ +.+......+.++.++|. .+.++.+. -.|.+.
T Consensus 17 IGeSGVGKSSLllrFv~~~fd~~~~~tIG--vDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT-------pSyyRg---- 83 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSNTFDDLHPTTIG--VDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT-------PSYYRG---- 83 (209)
T ss_pred EccCCccHHHHHHHHHhcccCccCCceee--eeEEEEEEEEcCceEEEEEEeccchHhhhccC-------HhHhcc----
Confidence 99999999999999887665543222222 334444556666666655 22333332 122211
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCC---C--eeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKV---N--IIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~v---n--vIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
.+=-.|+|=+. .+..+..+|+ +|+.|...+ | .+.|-+|.|+-+ |+.--++.=++..++|+-=
T Consensus 84 ---------aqGiIlVYDVT-~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes--~R~V~reEG~kfAr~h~~L 150 (209)
T KOG0080|consen 84 ---------AQGIILVYDVT-SRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKES--ERVVDREEGLKFARKHRCL 150 (209)
T ss_pred ---------CceeEEEEEcc-chhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchh--cccccHHHHHHHHHhhCcE
Confidence 11124677664 3456777876 577776322 3 346678999653 2322333333344445433
Q ss_pred EEeC
Q psy8479 261 IYEF 264 (650)
Q Consensus 261 if~f 264 (650)
+...
T Consensus 151 FiE~ 154 (209)
T KOG0080|consen 151 FIEC 154 (209)
T ss_pred EEEc
Confidence 3333
No 415
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.27 E-value=0.1 Score=54.57 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|++.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 41 LGHNGSGKSTISKILTGL 58 (271)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999986
No 416
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.25 E-value=0.1 Score=54.05 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 34 ~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 34 LGPNGAGKSTLLRALSGE 51 (258)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 417
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=91.25 E-value=0.09 Score=54.30 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 37 ~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 37 IGSSGSGKSTFLRCINFL 54 (257)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999996
No 418
>KOG1489|consensus
Probab=91.24 E-value=1 Score=48.52 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.5
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||-.|.|||||+|+|.+.+-
T Consensus 202 VG~PNAGKSTLL~als~AKp 221 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKP 221 (366)
T ss_pred ecCCCCcHHHHHHHhhccCC
Confidence 99999999999999998763
No 419
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.24 E-value=0.11 Score=52.78 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+|||||++.|++..
T Consensus 32 ~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 32 LGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999864
No 420
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.23 E-value=0.12 Score=52.31 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 421
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.23 E-value=0.11 Score=53.48 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 28 ~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 28 VGPNGAGKSTLLARMAGL 45 (248)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.21 E-value=0.092 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=19.6
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
.|-.+- +|.+|+|||||+++|++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344333 999999999999999985
No 423
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.19 E-value=0.1 Score=53.55 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 35 IGPSGCGKTTLLRSINRM 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 424
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.18 E-value=0.12 Score=51.66 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|++..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999953
No 425
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=91.18 E-value=0.098 Score=54.66 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 39 VGVNGSGKSTLFKALMGF 56 (272)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 426
>KOG0394|consensus
Probab=91.15 E-value=0.37 Score=48.13 Aligned_cols=136 Identities=14% Similarity=0.221 Sum_probs=73.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeecchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~ 191 (650)
.|.||||||||+|-+.++++...--.+++- .+-...+.+++.-+.|. -|..-=+ ++| +.+ +.. -
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~~qykaTIga--dFltKev~Vd~~~vtlQ--iWDTAGQ---ERF-------qsL-g~a-F 78 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGA--DFLTKEVQVDDRSVTLQ--IWDTAGQ---ERF-------QSL-GVA-F 78 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHhccccch--hheeeEEEEcCeEEEEE--EEecccH---HHh-------hhc-ccc-e
Confidence 899999999999999998765432222221 11112234444434443 2321110 111 001 110 1
Q ss_pred cCCceeeEEEEE-EcCCCCCCCcch---HHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC-CCcEE
Q psy8479 192 YHDNRIHVCLYF-ICPTGHGLKSLD---LVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSN-GVHIY 262 (650)
Q Consensus 192 ~~D~RVH~cLYf-I~ps~h~Lk~lD---I~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~-~I~if 262 (650)
+... +||+.. =.++...+..++ -+|+..-+ ...|+|.+-+|.|.=..+.++--.++.+.-.+.+ +|.+|
T Consensus 79 YRga--DcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 79 YRGA--DCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred ecCC--ceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeE
Confidence 2222 456555 344555666665 56777666 3669999999999865444444444445555554 56666
Q ss_pred eCC
Q psy8479 263 EFP 265 (650)
Q Consensus 263 ~f~ 265 (650)
.-.
T Consensus 157 EtS 159 (210)
T KOG0394|consen 157 ETS 159 (210)
T ss_pred Eec
Confidence 554
No 427
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.15 E-value=0.1 Score=53.65 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=17.0
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+-
T Consensus 35 ~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 35 IGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred ECCCCCCHHHHHHHHhhh
Confidence 999999999999999874
No 428
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.12 E-value=0.077 Score=55.72 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 33 ~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 33 LGRNGAGKSTLLKALAGD 50 (272)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 429
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=91.12 E-value=1.2 Score=50.53 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=31.3
Q ss_pred hHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEE
Q psy8479 215 DLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIY 262 (650)
Q Consensus 215 DI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if 262 (650)
=++++|.|-....+++.=-=.--||+.|...+-..++ .|.+.|.-|.
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~-~l~~~G~tIi 194 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILR-RLAAEGKTII 194 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHHHCCCEEE
Confidence 4667777777766666544455678888888777665 6666665443
No 430
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.06 E-value=0.11 Score=53.88 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 43 LGRSGCGKSTLARLLLGL 60 (265)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 431
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.05 E-value=0.13 Score=50.46 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 32 AGLVGNGQTELAEALFGLR 50 (182)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999963
No 432
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.073 Score=55.03 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 44 ~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 44 IGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 433
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=91.02 E-value=0.084 Score=54.99 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 52 ~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 52 IGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 999999999999999985
No 434
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=91.02 E-value=0.11 Score=53.28 Aligned_cols=18 Identities=44% Similarity=0.541 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 35 VGESGSGKSTLLGCLAGR 52 (253)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 435
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.02 E-value=0.11 Score=52.85 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 33 IGPSGSGKSTLLRCINKL 50 (240)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 436
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.02 E-value=0.11 Score=54.06 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 44 ~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 437
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.01 E-value=0.11 Score=51.51 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|.|||||+++|++.
T Consensus 37 ~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 37 VGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 999999999999999995
No 438
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=90.98 E-value=0.084 Score=56.14 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLGM 53 (303)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 439
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=90.98 E-value=0.11 Score=56.05 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||+++|.+.
T Consensus 39 vG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 39 VGESGSGKSLIAKAICGV 56 (330)
T ss_pred ECCCCCCHHHHHHHHHcc
Confidence 999999999999999985
No 440
>KOG1145|consensus
Probab=90.98 E-value=0.7 Score=52.88 Aligned_cols=119 Identities=23% Similarity=0.280 Sum_probs=80.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|---=|||||+.+|-++.+.+. .+.|-|+.|-.+++.+. +|-.+. ...|..+- .
T Consensus 159 MGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMR------------a---- 219 (683)
T KOG1145|consen 159 MGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMR------------A---- 219 (683)
T ss_pred eecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHH------------h----
Confidence 89999999999999999887764 45566778877777777 453333 22222222 1
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
|- +...|-- +|.. ..-.++++.=.+.++.... .|++|..|+|+|+-- +.-.+++++|-.++|.+
T Consensus 220 -RG-A~vtDIv---VLVV--AadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~-----a~pekv~~eL~~~gi~~ 284 (683)
T KOG1145|consen 220 -RG-ANVTDIV---VLVV--AADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG-----ANPEKVKRELLSQGIVV 284 (683)
T ss_pred -cc-CccccEE---EEEE--EccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC-----CCHHHHHHHHHHcCccH
Confidence 22 1344432 2222 2336899999999999984 889999999999752 23345677777777743
No 441
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.96 E-value=0.12 Score=51.83 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 36 VGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 999999999999999985
No 442
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.95 E-value=0.12 Score=52.92 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 53 ~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 53 IGPNGAGKTTTLKILSGL 70 (236)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 443
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.94 E-value=0.11 Score=54.73 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++-
T Consensus 39 ~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 39 VGQTGSGKSTLIQNINAL 56 (286)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 444
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.93 E-value=0.12 Score=52.53 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.|.
T Consensus 33 ~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 33 VGPSGSGKSTILRLLFRF 50 (236)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999995
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.93 E-value=0.12 Score=52.44 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 34 VGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999986
No 446
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.90 E-value=0.11 Score=54.48 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 36 IGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 447
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.90 E-value=0.12 Score=51.90 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=17.9
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||+++|.+..
T Consensus 33 ~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 33 VGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 9999999999999999964
No 448
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.89 E-value=0.12 Score=59.08 Aligned_cols=18 Identities=39% Similarity=0.340 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||+|.|++-
T Consensus 367 vG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999974
No 449
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.88 E-value=0.081 Score=54.39 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 36 IGPSGCGKSTVLRSINRM 53 (252)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 999999999999999985
No 450
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=90.87 E-value=0.12 Score=53.96 Aligned_cols=18 Identities=44% Similarity=0.416 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|++.
T Consensus 45 ~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 45 IGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 451
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.87 E-value=0.12 Score=51.66 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+..
T Consensus 39 ~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 39 LGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCCCCHHHHHHHhcccC
Confidence 9999999999999999963
No 452
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.83 E-value=0.12 Score=54.25 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 34 IGKNGSGKSTLALHLNGL 51 (274)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999995
No 453
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.81 E-value=0.12 Score=52.43 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 34 VGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999986
No 454
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.76 E-value=0.13 Score=52.74 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 36 IGPSGCGKTTFLRAINRM 53 (252)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999995
No 455
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.75 E-value=0.12 Score=53.37 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 39 ~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 39 IGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 456
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.73 E-value=0.14 Score=51.94 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 32 IGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 457
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=90.72 E-value=0.12 Score=51.74 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 28 ~G~nGsGKStll~al~~l 45 (197)
T cd03278 28 VGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999854
No 458
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=90.72 E-value=0.19 Score=51.39 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=17.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|..++|||||+|.|++.
T Consensus 13 ~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999998
No 459
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.69 E-value=0.14 Score=53.10 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 460
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.68 E-value=0.16 Score=50.40 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=25.4
Q ss_pred ccCCCCCCcccccccccCCCCceee-cCCCCCChhhHhhhhhCc
Q psy8479 87 WVNTRTPPPNFLEKSWNFIPGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 87 ~vG~~~lp~Q~~rk~~~~k~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
.+|..++.=+++ +|--+- ||+||+|||||++.|-++
T Consensus 19 ~~gc~~vsF~l~-------PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 19 GKGCRDVSFDLY-------PGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CcCccccceeec-------CCcEEEEEecCCCcHHhHHHHHhcc
Confidence 445555554443 343344 999999999999999886
No 461
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=90.68 E-value=0.27 Score=53.09 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.6
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||.+|+|||||+|+|++...
T Consensus 4 vG~pnvGKStLfn~lt~~~~ 23 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADV 23 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999764
No 462
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.13 Score=53.30 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+..
T Consensus 44 ~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 44 IGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999853
No 463
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.65 E-value=0.13 Score=52.77 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 39 MGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 999999999999999985
No 464
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=90.63 E-value=0.26 Score=48.24 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=53.2
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
....-.+|++||||..+ +. ..+..-+. -.+++++. +.+. .|+.+...+.
T Consensus 66 ~~~~~~i~~iDtPG~~~------f~-~~~~~~~~----------------------~~D~ailv-Vda~-~g~~~~~~~~ 114 (188)
T PF00009_consen 66 NENNRKITLIDTPGHED------FI-KEMIRGLR----------------------QADIAILV-VDAN-DGIQPQTEEH 114 (188)
T ss_dssp TESSEEEEEEEESSSHH------HH-HHHHHHHT----------------------TSSEEEEE-EETT-TBSTHHHHHH
T ss_pred cccccceeecccccccc------ee-ecccceec----------------------ccccceee-eecc-cccccccccc
Confidence 34557899999999854 22 22222121 14678888 5553 3577777777
Q ss_pred HHhcc-CcceEEeeeecCCCCCHHHHHHHHHHHHh
Q psy8479 612 MKKLD-SKVNIIPIIAKADTISKSELQKFKVSKTR 645 (650)
Q Consensus 612 mk~l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~ 645 (650)
++.+. ..+.+|-||.|.|.+ ..++...++.+.+
T Consensus 115 l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 115 LKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE 148 (188)
T ss_dssp HHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred cccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence 76663 445699999999999 6666666665553
No 465
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.63 E-value=0.13 Score=50.83 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 39 MGESGAGKTTLLDVLAGR 56 (192)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 466
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.63 E-value=0.12 Score=55.84 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+|||||+++|++..
T Consensus 114 vG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 114 IGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 9999999999999999864
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.62 E-value=0.12 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.0
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.||+|||||.+.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 455444 999999999999999874
No 468
>PRK10908 cell division protein FtsE; Provisional
Probab=90.61 E-value=0.15 Score=51.41 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGI 51 (222)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 469
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=90.60 E-value=0.13 Score=53.24 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 36 ~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 36 LGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 470
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.58 E-value=0.14 Score=49.51 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 34 ~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 34 VGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 999999999999999995
No 471
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.58 E-value=0.13 Score=52.77 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 35 IGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 472
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.56 E-value=0.13 Score=53.99 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 52 iG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 52 IGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 473
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.54 E-value=0.13 Score=52.94 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++.
T Consensus 37 ~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 37 IGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 474
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.53 E-value=0.15 Score=52.46 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 36 ~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999995
No 475
>KOG0410|consensus
Probab=90.52 E-value=0.22 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
||-+|.|||||||.|.+..++..
T Consensus 184 VGYTNaGKsTLikaLT~Aal~p~ 206 (410)
T KOG0410|consen 184 VGYTNAGKSTLIKALTKAALYPN 206 (410)
T ss_pred EeecCccHHHHHHHHHhhhcCcc
Confidence 99999999999999998776653
No 476
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.52 E-value=0.13 Score=54.28 Aligned_cols=18 Identities=44% Similarity=0.453 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++.
T Consensus 39 iG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 39 VGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 477
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=90.52 E-value=0.13 Score=53.71 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 39 MGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999986
No 478
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.51 E-value=0.13 Score=52.79 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.|.
T Consensus 36 ~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 36 IGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 999999999999999985
No 479
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.50 E-value=0.12 Score=54.25 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|.|||||++.|++.
T Consensus 39 ~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999986
No 480
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.49 E-value=0.15 Score=50.74 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 32 TGPNGSGKTTLLRILAGL 49 (201)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 481
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.48 E-value=0.14 Score=52.65 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 37 IGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 482
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.15 Score=58.57 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||.||.|||||+|.|.|-
T Consensus 353 vG~SGaGKSTLl~lL~G~ 370 (559)
T COG4988 353 VGASGAGKSTLLNLLLGF 370 (559)
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 999999999999999985
No 483
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.48 E-value=0.14 Score=51.24 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 30 ~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 30 MGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 484
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=90.48 E-value=0.14 Score=52.82 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 38 VGESGSGKTTLLNALSAR 55 (258)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 485
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.47 E-value=0.13 Score=55.47 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+-
T Consensus 58 ~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 58 IGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 486
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=90.46 E-value=0.14 Score=51.58 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|.|||||++.|.+.
T Consensus 37 ~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 37 TGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 487
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.46 E-value=0.15 Score=50.52 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 33 ~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 488
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.42 E-value=0.12 Score=54.48 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|.|||||++.|++.
T Consensus 39 ~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 39 IGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999985
No 489
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=90.35 E-value=0.14 Score=53.35 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+-
T Consensus 42 ~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 42 IGPSGCGKSTILRCFNRL 59 (264)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999984
No 490
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.35 E-value=0.14 Score=52.24 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||+++|.+.
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 32 LGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 491
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.33 E-value=0.14 Score=58.93 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+||||++|.|++-
T Consensus 361 VG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 361 VGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999984
No 492
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.32 E-value=0.16 Score=51.78 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 34 ~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 34 IGPNGAGKTTMMDVITGK 51 (242)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999996
No 493
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.30 E-value=0.14 Score=53.67 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 53 ~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 53 MGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999984
No 494
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.29 E-value=0.14 Score=53.92 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=17.9
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|.|||||+++|++-.
T Consensus 36 vG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 36 LGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred ECCCCCCHHHHHHHHhhhc
Confidence 9999999999999999964
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.26 E-value=0.14 Score=50.32 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+.
T Consensus 8 ~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQR 25 (186)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999775
No 496
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.24 E-value=0.16 Score=53.23 Aligned_cols=18 Identities=44% Similarity=0.431 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 39 ~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 39 IGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 497
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.22 E-value=0.13 Score=55.62 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||+++|.+-
T Consensus 48 vG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 48 VGESGSGKSQTAFALMGL 65 (330)
T ss_pred ECCCCchHHHHHHHHHcC
Confidence 999999999999999985
No 498
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.21 E-value=0.14 Score=54.05 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.7
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+|||||++.|.+.-
T Consensus 71 ~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 71 IGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 9999999999999999863
No 499
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.19 E-value=0.14 Score=53.60 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.|.
T Consensus 56 ~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 56 IGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999995
No 500
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.13 E-value=0.16 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.4
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcC
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~ 130 (650)
+|.-|. .|.||+||||+++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 355555 9999999999999999986
Done!