Query psy8479
Match_columns 650
No_of_seqs 548 out of 2346
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:54:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qag_B Septin-6, protein NEDD5 100.0 9.2E-36 3.1E-40 325.4 18.3 266 87-445 22-307 (427)
2 3t5d_A Septin-7; GTP-binding p 100.0 4.9E-34 1.7E-38 293.6 17.2 247 105-442 4-273 (274)
3 3sop_A Neuronal-specific septi 100.0 3.3E-34 1.1E-38 296.3 14.9 245 108-441 1-270 (270)
4 2qag_A Septin-2, protein NEDD5 100.0 1.1E-32 3.6E-37 295.8 14.6 268 83-444 13-307 (361)
5 2qag_C Septin-7; cell cycle, c 100.0 1.2E-31 4.2E-36 292.9 15.6 267 85-444 9-298 (418)
6 2qnr_A Septin-2, protein NEDD5 100.0 9.4E-30 3.2E-34 266.5 16.6 261 91-445 2-289 (301)
7 3t5d_A Septin-7; GTP-binding p 99.7 1.8E-17 6.2E-22 170.1 2.6 115 531-648 60-174 (274)
8 2qag_B Septin-6, protein NEDD5 99.6 2.7E-16 9.1E-21 172.0 2.6 114 533-648 92-206 (427)
9 3sop_A Neuronal-specific septi 99.6 6.1E-16 2.1E-20 159.6 3.1 115 532-648 56-170 (270)
10 2qag_A Septin-2, protein NEDD5 99.5 1.9E-15 6.5E-20 161.9 3.6 114 532-648 91-204 (361)
11 2qag_C Septin-7; cell cycle, c 99.5 1.4E-14 4.7E-19 158.4 5.7 114 532-648 84-197 (418)
12 1h65_A Chloroplast outer envel 99.3 2.3E-12 8E-17 131.6 9.2 155 84-256 8-187 (270)
13 2qnr_A Septin-2, protein NEDD5 99.3 6E-13 2.1E-17 139.0 1.9 114 532-648 72-185 (301)
14 4dhe_A Probable GTP-binding pr 99.1 1.1E-09 3.8E-14 106.7 13.0 145 107-265 31-191 (223)
15 1svi_A GTP-binding protein YSX 99.0 4.2E-09 1.4E-13 100.1 12.6 141 108-266 26-176 (195)
16 3pqc_A Probable GTP-binding pr 98.9 1.2E-08 4.1E-13 96.4 13.3 137 108-266 26-175 (195)
17 3lxx_A GTPase IMAP family memb 98.8 2E-08 6.7E-13 100.1 9.9 142 112-266 35-190 (239)
18 3iev_A GTP-binding protein ERA 98.7 6.7E-08 2.3E-12 100.9 13.4 151 109-279 14-177 (308)
19 1wf3_A GTP-binding protein; GT 98.7 7.4E-08 2.5E-12 100.5 12.3 112 112-242 13-134 (301)
20 3def_A T7I23.11 protein; chlor 98.7 3.4E-08 1.2E-12 100.3 9.2 113 112-238 42-164 (262)
21 3lxw_A GTPase IMAP family memb 98.6 5.9E-08 2E-12 98.0 7.8 69 195-266 104-184 (247)
22 1pui_A ENGB, probable GTP-bind 98.6 4.6E-07 1.6E-11 87.2 12.7 131 106-259 25-171 (210)
23 2p5s_A RAS and EF-hand domain 98.5 1.6E-07 5.5E-12 90.1 6.3 130 112-265 34-177 (199)
24 1z0f_A RAB14, member RAS oncog 98.4 5.1E-07 1.7E-11 83.7 9.2 128 112-266 21-159 (179)
25 3ec1_A YQEH GTPase; atnos1, at 98.4 1.4E-09 4.7E-14 116.8 -9.8 145 88-255 147-304 (369)
26 3h2y_A GTPase family protein; 98.4 3.8E-09 1.3E-13 113.4 -7.3 132 107-255 162-303 (368)
27 2dyk_A GTP-binding protein; GT 98.4 2.4E-07 8.3E-12 84.6 5.0 115 108-240 4-123 (161)
28 2efe_B Small GTP-binding prote 98.4 7.5E-07 2.6E-11 83.1 8.4 140 112-277 18-168 (181)
29 1ek0_A Protein (GTP-binding pr 98.4 4.2E-07 1.4E-11 83.4 6.3 130 112-266 9-150 (170)
30 2fg5_A RAB-22B, RAS-related pr 98.4 5.3E-07 1.8E-11 86.0 7.2 127 112-265 29-166 (192)
31 1z06_A RAS-related protein RAB 98.4 6.9E-07 2.4E-11 84.7 7.9 129 112-266 26-166 (189)
32 4bas_A ADP-ribosylation factor 98.4 7.7E-07 2.6E-11 84.4 8.2 129 108-265 20-169 (199)
33 2xtp_A GTPase IMAP family memb 98.3 1.4E-06 4.8E-11 87.6 10.3 42 196-239 105-153 (260)
34 2qu8_A Putative nucleolar GTP- 98.3 1.1E-06 3.9E-11 86.4 9.5 69 198-266 110-186 (228)
35 2qpt_A EH domain-containing pr 98.3 1.6E-06 5.4E-11 97.8 11.6 56 196-251 188-244 (550)
36 1kao_A RAP2A; GTP-binding prot 98.3 1.1E-06 3.8E-11 80.1 8.4 128 112-266 9-147 (167)
37 1u8z_A RAS-related protein RAL 98.3 6.2E-07 2.1E-11 81.9 6.7 127 112-265 10-147 (168)
38 3r7w_A Gtpase1, GTP-binding pr 98.3 2.9E-06 9.9E-11 88.3 12.4 141 109-266 7-163 (307)
39 1upt_A ARL1, ADP-ribosylation 98.3 1E-06 3.6E-11 81.1 7.9 125 112-265 13-149 (171)
40 2a9k_A RAS-related protein RAL 98.3 1E-06 3.4E-11 82.3 7.2 128 112-266 24-162 (187)
41 1z0j_A RAB-22, RAS-related pro 98.3 1.2E-06 4E-11 80.6 7.5 128 112-266 12-150 (170)
42 1z08_A RAS-related protein RAB 98.3 8.6E-07 3E-11 81.6 6.4 130 112-265 12-149 (170)
43 2y8e_A RAB-protein 6, GH09086P 98.3 1.6E-06 5.6E-11 80.3 7.9 128 112-266 20-158 (179)
44 2erx_A GTP-binding protein DI- 98.3 1.3E-06 4.6E-11 80.1 7.2 126 112-265 9-147 (172)
45 1zbd_A Rabphilin-3A; G protein 98.2 1.3E-06 4.4E-11 83.6 7.1 127 112-265 14-151 (203)
46 1r2q_A RAS-related protein RAB 98.2 1.9E-06 6.6E-11 78.9 8.0 139 112-277 12-162 (170)
47 2gf9_A RAS-related protein RAB 98.2 5.1E-07 1.7E-11 85.6 4.1 128 112-266 28-166 (189)
48 1z2a_A RAS-related protein RAB 98.2 6.7E-07 2.3E-11 82.0 4.7 127 112-265 11-147 (168)
49 3iby_A Ferrous iron transport 98.2 2.1E-07 7.3E-12 94.7 1.4 109 107-241 3-126 (256)
50 1wms_A RAB-9, RAB9, RAS-relate 98.2 1.4E-06 4.8E-11 80.9 6.9 127 112-266 13-155 (177)
51 2g6b_A RAS-related protein RAB 98.2 1.8E-06 6.3E-11 80.3 7.5 129 112-265 16-154 (180)
52 2ce2_X GTPase HRAS; signaling 98.2 1.3E-06 4.6E-11 79.3 6.4 125 112-265 9-145 (166)
53 1jwy_B Dynamin A GTPase domain 98.2 2.2E-06 7.4E-11 88.4 8.7 45 197-241 168-214 (315)
54 3clv_A RAB5 protein, putative; 98.2 1.4E-06 4.7E-11 82.1 6.5 67 196-266 116-185 (208)
55 2h57_A ADP-ribosylation factor 98.2 7.9E-07 2.7E-11 84.4 4.8 128 112-265 27-167 (190)
56 3bc1_A RAS-related protein RAB 98.2 3.5E-06 1.2E-10 79.0 8.7 128 112-266 17-166 (195)
57 2hjg_A GTP-binding protein ENG 98.2 1.9E-06 6.3E-11 94.1 7.6 116 107-240 5-126 (436)
58 4dsu_A GTPase KRAS, isoform 2B 98.2 3.9E-06 1.3E-10 78.6 8.8 127 112-266 10-147 (189)
59 1g16_A RAS-related protein SEC 98.2 1E-06 3.4E-11 81.0 4.6 126 112-265 9-145 (170)
60 2bov_A RAla, RAS-related prote 98.2 1.9E-06 6.4E-11 82.2 6.6 127 112-265 20-157 (206)
61 1ksh_A ARF-like protein 2; sma 98.2 1.7E-06 5.7E-11 81.5 6.0 108 107-240 18-134 (186)
62 2ged_A SR-beta, signal recogni 98.2 6.6E-07 2.3E-11 84.8 3.3 60 196-255 118-186 (193)
63 1x3s_A RAS-related protein RAB 98.2 1.3E-06 4.6E-11 82.3 5.3 126 112-265 21-158 (195)
64 2hjg_A GTP-binding protein ENG 98.2 2.1E-06 7.1E-11 93.7 7.6 137 112-265 181-329 (436)
65 3tkl_A RAS-related protein RAB 98.2 2.2E-06 7.7E-11 81.0 6.8 128 112-265 22-159 (196)
66 1nrj_B SR-beta, signal recogni 98.2 4.3E-06 1.5E-10 81.0 8.9 118 112-253 18-148 (218)
67 3tw8_B RAS-related protein RAB 98.2 7.5E-07 2.6E-11 82.7 3.4 127 112-265 15-151 (181)
68 2fn4_A P23, RAS-related protei 98.2 1.6E-06 5.5E-11 80.4 5.5 127 112-265 15-152 (181)
69 1mky_A Probable GTP-binding pr 98.2 1.5E-06 5E-11 95.0 6.0 113 108-238 4-123 (439)
70 3cph_A RAS-related protein SEC 98.2 9.6E-07 3.3E-11 84.8 3.9 126 112-265 26-162 (213)
71 3i8s_A Ferrous iron transport 98.1 7.6E-07 2.6E-11 91.3 3.3 150 108-279 6-164 (274)
72 3con_A GTPase NRAS; structural 98.1 3.7E-06 1.3E-10 79.4 7.9 22 112-133 27-48 (190)
73 2f7s_A C25KG, RAS-related prot 98.1 1.7E-06 5.8E-11 83.8 5.5 125 112-265 31-179 (217)
74 4dcu_A GTP-binding protein ENG 98.1 1.7E-06 5.8E-11 95.0 6.1 113 106-238 24-144 (456)
75 1mh1_A RAC1; GTP-binding, GTPa 98.1 3.2E-06 1.1E-10 78.9 7.1 105 112-241 11-125 (186)
76 2yc2_C IFT27, small RAB-relate 98.1 2.1E-06 7.1E-11 81.8 5.8 130 112-265 26-171 (208)
77 2gco_A H9, RHO-related GTP-bin 98.1 7.1E-06 2.4E-10 78.8 9.5 106 112-242 31-146 (201)
78 2oil_A CATX-8, RAS-related pro 98.1 2.9E-06 9.8E-11 80.5 6.6 127 112-265 31-168 (193)
79 2bme_A RAB4A, RAS-related prot 98.1 4.5E-06 1.5E-10 78.2 7.6 129 112-266 16-154 (186)
80 3reg_A RHO-like small GTPase; 98.1 1.6E-06 5.3E-11 82.6 4.4 129 112-265 29-168 (194)
81 2a5j_A RAS-related protein RAB 98.1 1.9E-06 6.5E-11 81.9 5.0 127 112-265 27-164 (191)
82 2fv8_A H6, RHO-related GTP-bin 98.1 4.9E-06 1.7E-10 80.3 7.9 109 108-242 28-146 (207)
83 2gf0_A GTP-binding protein DI- 98.1 4.3E-06 1.5E-10 79.2 7.3 126 112-265 14-151 (199)
84 1c1y_A RAS-related protein RAP 98.1 6.6E-06 2.3E-10 75.2 8.2 127 112-265 9-147 (167)
85 3dz8_A RAS-related protein RAB 98.1 1.3E-06 4.3E-11 83.2 3.5 127 112-265 29-166 (191)
86 2gj8_A MNME, tRNA modification 98.1 6.2E-06 2.1E-10 77.6 8.1 110 112-238 10-128 (172)
87 2j1l_A RHO-related GTP-binding 98.1 8.4E-06 2.9E-10 79.3 9.3 107 112-243 40-156 (214)
88 2fh5_B SR-beta, signal recogni 98.1 4.9E-06 1.7E-10 80.3 7.4 115 112-255 13-145 (214)
89 1h65_A Chloroplast outer envel 98.1 9.8E-07 3.4E-11 89.8 2.5 91 535-646 86-184 (270)
90 2atx_A Small GTP binding prote 98.1 5.6E-06 1.9E-10 78.5 7.6 105 112-241 24-138 (194)
91 1ega_A Protein (GTP-binding pr 98.1 1.4E-05 4.7E-10 83.1 10.9 117 112-243 14-135 (301)
92 2lkc_A Translation initiation 98.1 7E-06 2.4E-10 76.2 7.6 104 112-240 14-122 (178)
93 1wb1_A Translation elongation 98.0 1.9E-05 6.5E-10 87.6 12.2 134 112-265 25-169 (482)
94 4djt_A GTP-binding nuclear pro 98.0 3.8E-06 1.3E-10 81.4 5.7 66 197-265 85-155 (218)
95 2bcg_Y Protein YP2, GTP-bindin 98.0 3.4E-06 1.2E-10 81.0 5.1 127 112-265 14-151 (206)
96 1ky3_A GTP-binding protein YPT 98.0 1.1E-05 3.9E-10 74.7 8.4 23 112-134 14-36 (182)
97 1r8s_A ADP-ribosylation factor 98.0 3.1E-06 1E-10 77.6 4.4 102 112-240 6-116 (164)
98 3llu_A RAS-related GTP-binding 98.0 3E-05 1E-09 74.1 11.5 68 197-265 96-178 (196)
99 1lnz_A SPO0B-associated GTP-bi 98.0 5.6E-06 1.9E-10 88.0 7.0 113 107-242 160-291 (342)
100 3kkq_A RAS-related protein M-R 98.0 1.7E-05 5.8E-10 74.2 9.5 127 112-265 24-161 (183)
101 2aka_B Dynamin-1; fusion prote 98.0 5.8E-06 2E-10 84.3 6.6 42 199-241 164-208 (299)
102 1zj6_A ADP-ribosylation factor 98.0 2.4E-06 8.3E-11 80.8 3.5 99 112-239 22-131 (187)
103 3t34_A Dynamin-related protein 98.0 1.3E-05 4.4E-10 85.0 9.4 45 197-241 173-219 (360)
104 2il1_A RAB12; G-protein, GDP, 98.0 7.7E-06 2.6E-10 78.0 6.8 128 112-265 32-170 (192)
105 1zd9_A ADP-ribosylation factor 98.0 5.2E-06 1.8E-10 78.8 5.6 101 112-240 28-139 (188)
106 2cxx_A Probable GTP-binding pr 98.0 3.1E-05 1.1E-09 72.5 10.9 118 109-241 5-138 (190)
107 2h17_A ADP-ribosylation factor 98.0 1.4E-06 4.8E-11 82.1 1.5 99 112-239 27-136 (181)
108 2ew1_A RAS-related protein RAB 98.0 1.1E-05 3.8E-10 78.2 7.9 128 112-265 32-169 (201)
109 2nzj_A GTP-binding protein REM 98.0 6.7E-06 2.3E-10 75.9 5.9 133 112-265 10-149 (175)
110 1vg8_A RAS-related protein RAB 98.0 7.1E-06 2.4E-10 78.3 6.2 127 112-265 14-155 (207)
111 3oes_A GTPase rhebl1; small GT 98.0 4.3E-06 1.5E-10 80.2 4.7 127 112-266 30-168 (201)
112 3gee_A MNME, tRNA modification 98.0 8.2E-06 2.8E-10 90.5 7.5 124 106-243 232-361 (476)
113 3q72_A GTP-binding protein RAD 98.0 5.6E-06 1.9E-10 76.0 5.2 125 112-265 8-144 (166)
114 2hup_A RAS-related protein RAB 98.0 5.9E-06 2E-10 79.6 5.5 127 112-265 35-173 (201)
115 3a1s_A Iron(II) transport prot 98.0 6.3E-06 2.2E-10 83.8 5.9 134 108-265 8-147 (258)
116 2x77_A ADP-ribosylation factor 98.0 2.2E-06 7.4E-11 81.1 2.1 45 196-240 89-138 (189)
117 1mky_A Probable GTP-binding pr 98.0 9.6E-06 3.3E-10 88.5 7.5 143 112-265 186-335 (439)
118 3k53_A Ferrous iron transport 97.9 2.5E-06 8.7E-11 86.8 2.5 130 108-265 6-146 (271)
119 3cpj_B GTP-binding protein YPT 97.9 4.2E-06 1.4E-10 81.9 3.9 127 112-265 19-156 (223)
120 3q85_A GTP-binding protein REM 97.9 8E-06 2.7E-10 75.1 5.4 128 112-265 8-147 (169)
121 3t5g_A GTP-binding protein RHE 97.9 7.7E-06 2.6E-10 76.4 5.3 128 112-266 12-150 (181)
122 3q3j_B RHO-related GTP-binding 97.9 2E-05 6.7E-10 76.9 8.4 103 112-239 33-145 (214)
123 2x2e_A Dynamin-1; nitration, h 97.9 2.1E-05 7.1E-10 83.4 9.2 43 198-241 169-213 (353)
124 3c5c_A RAS-like protein 12; GD 97.9 2.6E-05 8.9E-10 74.1 9.0 22 112-133 27-48 (187)
125 2o52_A RAS-related protein RAB 97.9 3.6E-06 1.2E-10 81.0 2.8 130 112-265 31-168 (200)
126 2fu5_C RAS-related protein RAB 97.9 2.4E-06 8.3E-11 80.0 1.4 130 112-265 14-151 (183)
127 4dcu_A GTP-binding protein ENG 97.9 1.6E-05 5.4E-10 87.2 7.7 68 197-265 278-349 (456)
128 2b6h_A ADP-ribosylation factor 97.9 7.1E-06 2.4E-10 78.5 4.1 106 106-240 28-145 (192)
129 2e87_A Hypothetical protein PH 97.9 7.1E-05 2.4E-09 79.3 11.9 65 197-265 247-316 (357)
130 2j69_A Bacterial dynamin-like 97.8 6.9E-05 2.3E-09 86.7 12.6 44 197-241 201-246 (695)
131 2wjg_A FEOB, ferrous iron tran 97.8 7.1E-06 2.4E-10 77.2 3.5 107 108-240 10-127 (188)
132 3qq5_A Small GTP-binding prote 97.8 2.7E-06 9.4E-11 93.0 0.6 133 108-265 37-176 (423)
133 3cbq_A GTP-binding protein REM 97.8 2.4E-05 8.3E-10 75.1 7.1 20 112-131 29-48 (195)
134 1moz_A ARL1, ADP-ribosylation 97.8 4.7E-06 1.6E-10 77.9 1.7 45 196-240 85-134 (183)
135 4gzl_A RAS-related C3 botulinu 97.8 5.6E-05 1.9E-09 72.9 9.2 106 112-242 36-151 (204)
136 1fzq_A ADP-ribosylation factor 97.8 9.1E-06 3.1E-10 76.9 3.5 100 112-240 22-132 (181)
137 2atv_A RERG, RAS-like estrogen 97.8 1.9E-05 6.3E-10 75.3 5.6 22 112-133 34-55 (196)
138 1m7b_A RND3/RHOE small GTP-bin 97.8 3.3E-05 1.1E-09 72.8 7.2 103 112-239 13-125 (184)
139 2j0v_A RAC-like GTP-binding pr 97.8 3E-05 1E-09 74.7 6.9 105 112-241 15-129 (212)
140 3bwd_D RAC-like GTP-binding pr 97.8 9.8E-06 3.3E-10 75.5 3.0 46 197-242 80-129 (182)
141 3t1o_A Gliding protein MGLA; G 97.8 1.3E-05 4.4E-10 75.4 3.8 64 197-265 98-172 (198)
142 2q3h_A RAS homolog gene family 97.8 3E-05 1E-09 73.9 6.3 104 112-240 26-139 (201)
143 2zej_A Dardarin, leucine-rich 97.7 8.3E-05 2.8E-09 70.2 9.2 20 109-129 6-25 (184)
144 1kk1_A EIF2gamma; initiation o 97.7 0.00015 5.2E-09 78.2 12.2 85 196-280 106-196 (410)
145 3sjy_A Translation initiation 97.7 0.00055 1.9E-08 73.8 16.4 84 197-280 99-188 (403)
146 1gwn_A RHO-related GTP-binding 97.7 4.7E-05 1.6E-09 73.9 7.1 103 112-239 34-146 (205)
147 3geh_A MNME, tRNA modification 97.7 1.5E-05 5E-10 88.1 3.7 123 106-242 223-347 (462)
148 1d2e_A Elongation factor TU (E 97.7 0.00012 4E-09 78.9 10.6 62 196-258 89-153 (397)
149 2iwr_A Centaurin gamma 1; ANK 97.7 8.3E-05 2.8E-09 69.1 8.2 22 112-133 13-34 (178)
150 3th5_A RAS-related C3 botulinu 96.9 5.5E-06 1.9E-10 79.5 0.0 45 197-241 102-150 (204)
151 2hxs_A RAB-26, RAS-related pro 97.7 2.3E-05 7.9E-10 72.6 4.2 21 112-132 12-32 (178)
152 3l0i_B RAS-related protein RAB 97.7 5.1E-06 1.7E-10 79.6 -0.5 22 112-133 39-60 (199)
153 3o47_A ADP-ribosylation factor 97.7 2.5E-05 8.5E-10 82.2 4.8 108 106-242 164-283 (329)
154 3ihw_A Centg3; RAS, centaurin, 97.7 4.1E-05 1.4E-09 72.7 5.7 22 112-133 26-47 (184)
155 2wji_A Ferrous iron transport 97.6 8.1E-05 2.8E-09 69.1 7.3 22 109-131 7-28 (165)
156 3cnl_A YLQF, putative uncharac 97.6 3E-05 1E-09 79.2 4.5 122 112-266 105-247 (262)
157 1m2o_B GTP-binding protein SAR 97.6 6.8E-05 2.3E-09 71.5 6.7 99 112-239 29-138 (190)
158 3gj0_A GTP-binding nuclear pro 97.6 1.1E-05 3.9E-10 78.4 0.9 125 112-265 21-155 (221)
159 1xzp_A Probable tRNA modificat 97.6 1.7E-05 6E-10 88.0 2.2 41 197-239 324-364 (482)
160 3b1v_A Ferrous iron uptake tra 97.6 9.3E-06 3.2E-10 83.4 -0.0 105 108-239 6-121 (272)
161 1s0u_A EIF-2-gamma, translatio 97.6 0.00029 1E-08 76.0 11.7 85 196-280 104-194 (408)
162 3j2k_7 ERF3, eukaryotic polype 97.6 0.00042 1.4E-08 75.8 12.8 61 197-258 119-192 (439)
163 2wkq_A NPH1-1, RAS-related C3 97.6 0.00011 3.7E-09 75.4 7.7 109 107-240 155-274 (332)
164 1zun_B Sulfate adenylate trans 97.6 0.0002 7E-09 77.9 10.1 61 197-258 128-192 (434)
165 2c78_A Elongation factor TU-A; 97.5 0.0001 3.5E-09 79.5 7.3 61 197-258 99-162 (405)
166 2qtf_A Protein HFLX, GTP-bindi 97.5 0.00026 8.7E-09 75.8 10.0 111 112-241 185-308 (364)
167 3p26_A Elongation factor 1 alp 97.5 0.00019 6.7E-09 79.2 9.1 61 197-257 135-205 (483)
168 1f6b_A SAR1; gtpases, N-termin 97.5 5.9E-05 2E-09 72.5 4.3 102 112-239 31-140 (198)
169 1jny_A EF-1-alpha, elongation 97.5 0.00021 7.1E-09 78.0 8.5 62 196-258 107-181 (435)
170 3zvr_A Dynamin-1; hydrolase, D 97.3 0.00039 1.3E-08 81.2 9.4 46 196-242 187-234 (772)
171 2elf_A Protein translation elo 97.3 0.00022 7.4E-09 76.5 6.3 57 197-256 84-143 (370)
172 3izq_1 HBS1P, elongation facto 97.3 0.00053 1.8E-08 78.2 9.7 63 196-258 268-340 (611)
173 3mca_A HBS1, elongation factor 97.3 0.00014 4.8E-09 82.6 4.5 63 196-258 278-351 (592)
174 4dkx_A RAS-related protein RAB 97.2 0.00062 2.1E-08 67.3 8.2 126 112-265 19-156 (216)
175 3lvq_E ARF-GAP with SH3 domain 97.2 0.00023 7.9E-09 78.4 5.4 101 112-239 328-437 (497)
176 3r7w_B Gtpase2, GTP-binding pr 97.2 0.00055 1.9E-08 72.5 7.8 69 197-266 73-156 (331)
177 3dpu_A RAB family protein; roc 97.2 9.5E-05 3.2E-09 82.6 2.0 64 197-265 122-188 (535)
178 2xex_A Elongation factor G; GT 97.2 0.00033 1.1E-08 81.0 6.4 56 197-254 99-155 (693)
179 1f60_A Elongation factor EEF1A 97.1 0.00021 7.3E-09 78.5 3.9 62 196-258 108-180 (458)
180 2f9l_A RAB11B, member RAS onco 97.1 0.00032 1.1E-08 67.1 4.6 21 112-132 11-31 (199)
181 1wxq_A GTP-binding protein; st 97.1 0.00066 2.3E-08 73.4 7.4 21 109-130 4-24 (397)
182 2g3y_A GTP-binding protein GEM 97.1 0.0014 4.8E-08 64.4 9.0 19 112-130 43-61 (211)
183 1tq4_A IIGP1, interferon-induc 97.0 0.0038 1.3E-07 67.9 12.0 29 211-239 160-189 (413)
184 2h5e_A Peptide chain release f 97.0 0.00063 2.2E-08 76.3 5.9 57 196-254 105-162 (529)
185 1udx_A The GTP-binding protein 96.9 0.0022 7.5E-08 69.9 9.7 65 196-265 235-305 (416)
186 3tr5_A RF-3, peptide chain rel 96.9 0.00021 7.1E-09 80.2 1.7 44 197-241 106-150 (528)
187 1r5b_A Eukaryotic peptide chai 96.9 0.00089 3E-08 73.8 6.2 61 196-257 144-217 (467)
188 3avx_A Elongation factor TS, e 96.9 0.0025 8.7E-08 77.2 10.3 69 196-265 382-458 (1289)
189 2dy1_A Elongation factor G; tr 96.8 0.0022 7.5E-08 73.8 9.1 56 197-255 98-154 (665)
190 3c5h_A Glucocorticoid receptor 96.8 0.00043 1.5E-08 69.7 2.5 65 196-265 162-235 (255)
191 1dar_A EF-G, elongation factor 96.8 0.0021 7.3E-08 74.2 8.4 43 197-240 101-144 (691)
192 4a9a_A Ribosome-interacting GT 96.7 0.0012 4.1E-08 71.1 5.3 44 108-154 75-118 (376)
193 3cb4_D GTP-binding protein LEP 96.7 0.0047 1.6E-07 70.3 10.1 83 197-281 95-179 (599)
194 2rdo_7 EF-G, elongation factor 96.7 0.0078 2.7E-07 69.7 12.1 57 197-255 106-163 (704)
195 4dhe_A Probable GTP-binding pr 96.6 0.0014 4.8E-08 63.2 4.5 91 535-646 78-172 (223)
196 2qpt_A EH domain-containing pr 96.6 0.0016 5.4E-08 73.4 5.3 56 588-644 188-244 (550)
197 3def_A T7I23.11 protein; chlor 96.5 0.0011 3.7E-08 66.9 3.1 76 536-632 84-165 (262)
198 3izy_P Translation initiation 96.5 0.00019 6.5E-09 80.7 -2.9 42 197-239 76-118 (537)
199 1g7s_A Translation initiation 96.3 0.0027 9.4E-08 72.1 5.3 42 197-239 94-136 (594)
200 1n0u_A EF-2, elongation factor 96.3 0.0037 1.2E-07 73.9 6.5 41 197-238 122-163 (842)
201 2cjw_A GTP-binding protein GEM 96.3 0.0015 5E-08 62.4 2.4 19 112-130 12-30 (192)
202 3p32_A Probable GTPase RV1496/ 96.3 0.0057 1.9E-07 64.7 7.1 58 195-256 191-248 (355)
203 2ywe_A GTP-binding protein LEP 96.1 0.0071 2.4E-07 68.9 7.0 43 197-240 97-140 (600)
204 1zo1_I IF2, translation initia 96.1 0.0009 3.1E-08 74.6 -0.4 42 197-239 75-117 (501)
205 3ec1_A YQEH GTPase; atnos1, at 96.1 0.001 3.4E-08 71.2 -0.0 86 537-647 213-303 (369)
206 1svi_A GTP-binding protein YSX 95.9 0.003 1E-07 59.3 2.7 89 537-646 70-162 (195)
207 1puj_A YLQF, conserved hypothe 95.5 0.0047 1.6E-07 63.6 2.5 31 112-143 126-156 (282)
208 3lxx_A GTPase IMAP family memb 95.3 0.01 3.4E-07 58.6 3.7 80 536-637 78-164 (239)
209 3szr_A Interferon-induced GTP- 95.2 0.067 2.3E-06 60.8 10.7 21 108-129 48-68 (608)
210 3pqc_A Probable GTP-binding pr 95.0 0.0079 2.7E-07 56.0 1.9 90 536-646 68-161 (195)
211 3h2y_A GTPase family protein; 94.9 0.0025 8.5E-08 68.1 -1.9 85 538-647 213-302 (368)
212 1wf3_A GTP-binding protein; GT 94.8 0.016 5.4E-07 60.1 3.9 78 535-635 54-134 (301)
213 1oix_A RAS-related protein RAB 94.8 0.028 9.4E-07 53.3 5.1 21 112-132 35-55 (191)
214 1f5n_A Interferon-induced guan 94.3 0.027 9.1E-07 64.0 4.3 20 112-131 44-63 (592)
215 2rcn_A Probable GTPase ENGC; Y 94.3 0.013 4.5E-07 62.5 1.7 20 112-131 221-240 (358)
216 1lvg_A Guanylate kinase, GMP k 94.0 0.014 4.7E-07 56.4 1.1 21 108-129 7-27 (198)
217 1u0l_A Probable GTPase ENGC; p 94.0 0.016 5.6E-07 59.8 1.7 19 112-130 175-193 (301)
218 2ohf_A Protein OLA1, GTP-bindi 94.0 0.02 6.9E-07 61.9 2.4 20 112-131 28-47 (396)
219 1t9h_A YLOQ, probable GTPase E 93.9 0.0074 2.5E-07 63.2 -1.2 19 112-130 179-197 (307)
220 1kgd_A CASK, peripheral plasma 93.9 0.015 5.2E-07 55.0 1.1 18 112-129 11-28 (180)
221 1ni3_A YCHF GTPase, YCHF GTP-b 93.7 0.026 9E-07 60.9 2.7 26 106-131 19-45 (392)
222 1s96_A Guanylate kinase, GMP k 93.6 0.02 7E-07 56.6 1.5 25 106-130 15-40 (219)
223 2yv5_A YJEQ protein; hydrolase 93.6 0.021 7.1E-07 59.2 1.6 16 112-127 171-186 (302)
224 1znw_A Guanylate kinase, GMP k 93.5 0.022 7.5E-07 55.0 1.6 24 106-129 19-43 (207)
225 4gp7_A Metallophosphoesterase; 93.4 0.026 9E-07 53.0 1.9 17 112-128 15-31 (171)
226 2pcj_A ABC transporter, lipopr 93.4 0.019 6.4E-07 56.9 0.8 18 112-129 36-53 (224)
227 2www_A Methylmalonic aciduria 93.4 0.022 7.4E-07 60.3 1.3 23 107-129 74-97 (349)
228 1jal_A YCHF protein; nucleotid 93.3 0.019 6.5E-07 61.4 0.7 21 109-130 6-26 (363)
229 1z6g_A Guanylate kinase; struc 93.2 0.026 8.8E-07 55.4 1.5 18 112-129 29-46 (218)
230 1g6h_A High-affinity branched- 93.1 0.024 8.2E-07 57.3 1.1 18 112-129 39-56 (257)
231 1ye8_A Protein THEP1, hypothet 93.0 0.025 8.6E-07 54.0 1.1 18 112-129 6-23 (178)
232 3tif_A Uncharacterized ABC tra 93.0 0.034 1.2E-06 55.5 2.1 18 112-129 37-54 (235)
233 2ff7_A Alpha-hemolysin translo 93.0 0.026 8.9E-07 56.8 1.2 18 112-129 41-58 (247)
234 4g1u_C Hemin import ATP-bindin 93.0 0.026 8.9E-07 57.5 1.2 18 112-129 43-60 (266)
235 3gfo_A Cobalt import ATP-bindi 92.9 0.028 9.4E-07 57.7 1.2 18 112-129 40-57 (275)
236 2d2e_A SUFC protein; ABC-ATPas 92.8 0.028 9.7E-07 56.6 1.2 18 112-129 35-52 (250)
237 1sgw_A Putative ABC transporte 92.8 0.029 1E-06 55.4 1.2 18 112-129 41-58 (214)
238 1ji0_A ABC transporter; ATP bi 92.7 0.03 1E-06 56.0 1.2 18 112-129 38-55 (240)
239 3a00_A Guanylate kinase, GMP k 92.7 0.03 1E-06 53.1 1.2 21 108-129 4-24 (186)
240 2pze_A Cystic fibrosis transme 92.7 0.031 1.1E-06 55.5 1.2 18 112-129 40-57 (229)
241 1jwy_B Dynamin A GTPase domain 92.6 0.062 2.1E-06 54.8 3.5 46 589-635 168-215 (315)
242 2aka_B Dynamin-1; fusion prote 92.6 0.055 1.9E-06 54.6 3.0 77 535-635 124-209 (299)
243 1b0u_A Histidine permease; ABC 92.6 0.043 1.5E-06 55.7 2.1 18 112-129 38-55 (262)
244 2cbz_A Multidrug resistance-as 92.5 0.045 1.5E-06 54.7 2.1 18 112-129 37-54 (237)
245 3iev_A GTP-binding protein ERA 92.5 0.052 1.8E-06 56.1 2.7 91 535-646 58-151 (308)
246 3tr0_A Guanylate kinase, GMP k 92.4 0.04 1.4E-06 52.3 1.6 18 112-129 13-30 (205)
247 2ihy_A ABC transporter, ATP-bi 92.4 0.034 1.2E-06 57.1 1.2 18 112-129 53-70 (279)
248 2qi9_C Vitamin B12 import ATP- 92.3 0.037 1.3E-06 55.9 1.2 18 112-129 32-49 (249)
249 3ney_A 55 kDa erythrocyte memb 92.2 0.037 1.3E-06 54.2 1.1 20 109-129 23-42 (197)
250 1mv5_A LMRA, multidrug resista 92.2 0.05 1.7E-06 54.4 2.1 18 112-129 34-51 (243)
251 2nq2_C Hypothetical ABC transp 92.2 0.039 1.3E-06 55.8 1.2 18 112-129 37-54 (253)
252 2olj_A Amino acid ABC transpor 92.0 0.054 1.8E-06 55.2 2.1 18 112-129 56-73 (263)
253 2ixe_A Antigen peptide transpo 92.0 0.055 1.9E-06 55.2 2.1 18 112-129 51-68 (271)
254 2x2e_A Dynamin-1; nitration, h 91.9 0.065 2.2E-06 56.4 2.7 77 535-634 129-213 (353)
255 1np6_A Molybdopterin-guanine d 91.9 0.05 1.7E-06 52.0 1.6 22 107-129 8-29 (174)
256 1vpl_A ABC transporter, ATP-bi 91.8 0.059 2E-06 54.6 2.1 18 112-129 47-64 (256)
257 3c8u_A Fructokinase; YP_612366 91.8 0.054 1.8E-06 52.3 1.7 24 106-129 21-45 (208)
258 2zu0_C Probable ATP-dependent 91.8 0.06 2.1E-06 54.8 2.1 18 112-129 52-69 (267)
259 2onk_A Molybdate/tungstate ABC 91.7 0.05 1.7E-06 54.6 1.4 18 112-129 30-47 (240)
260 2ghi_A Transport protein; mult 91.7 0.062 2.1E-06 54.4 2.1 18 112-129 52-69 (260)
261 2qm8_A GTPase/ATPase; G protei 91.7 0.055 1.9E-06 56.9 1.8 24 106-129 54-78 (337)
262 3lxw_A GTPase IMAP family memb 91.6 0.07 2.4E-06 53.3 2.4 75 536-632 70-153 (247)
263 2yz2_A Putative ABC transporte 91.5 0.067 2.3E-06 54.3 2.1 18 112-129 39-56 (266)
264 1htw_A HI0065; nucleotide-bind 91.5 0.061 2.1E-06 50.5 1.7 19 112-130 39-57 (158)
265 3lnc_A Guanylate kinase, GMP k 91.3 0.049 1.7E-06 53.3 0.8 18 112-129 33-51 (231)
266 2wsm_A Hydrogenase expression/ 91.2 0.048 1.7E-06 52.4 0.7 21 108-129 33-53 (221)
267 1nrj_B SR-beta, signal recogni 91.2 0.092 3.1E-06 50.2 2.7 82 534-641 53-143 (218)
268 2xtp_A GTPase IMAP family memb 91.2 0.065 2.2E-06 53.2 1.6 76 536-632 71-153 (260)
269 2j69_A Bacterial dynamin-like 91.1 0.081 2.8E-06 61.1 2.5 71 536-634 174-246 (695)
270 1zp6_A Hypothetical protein AT 91.0 0.08 2.8E-06 49.7 1.9 24 106-129 8-32 (191)
271 2qu8_A Putative nucleolar GTP- 90.9 0.14 4.9E-06 49.6 3.7 46 589-635 109-159 (228)
272 3nh6_A ATP-binding cassette SU 90.9 0.06 2.1E-06 56.1 1.1 18 112-129 86-103 (306)
273 3b85_A Phosphate starvation-in 90.7 0.06 2E-06 52.8 0.8 18 112-129 28-45 (208)
274 3tui_C Methionine import ATP-b 90.6 0.09 3.1E-06 56.3 2.1 18 112-129 60-77 (366)
275 2hf9_A Probable hydrogenase ni 90.5 0.074 2.5E-06 51.2 1.2 19 112-130 44-62 (226)
276 2f1r_A Molybdopterin-guanine d 90.4 0.036 1.2E-06 52.8 -1.1 22 107-129 4-25 (171)
277 3t34_A Dynamin-related protein 90.3 0.13 4.4E-06 54.1 3.0 77 535-634 135-219 (360)
278 2eyu_A Twitching motility prot 90.3 0.088 3E-06 53.4 1.7 24 106-129 24-48 (261)
279 2pjz_A Hypothetical protein ST 90.2 0.085 2.9E-06 53.7 1.5 19 112-130 36-54 (263)
280 3asz_A Uridine kinase; cytidin 90.2 0.079 2.7E-06 50.7 1.2 24 106-129 5-29 (211)
281 2bbs_A Cystic fibrosis transme 90.2 0.094 3.2E-06 54.2 1.8 18 112-129 70-87 (290)
282 2ged_A SR-beta, signal recogni 90.1 0.083 2.8E-06 49.3 1.2 87 534-647 89-185 (193)
283 3tau_A Guanylate kinase, GMP k 90.0 0.1 3.6E-06 50.4 1.8 18 112-129 14-31 (208)
284 2j41_A Guanylate kinase; GMP, 89.9 0.1 3.5E-06 49.4 1.7 18 112-129 12-29 (207)
285 2v9p_A Replication protein E1; 89.9 0.1 3.5E-06 54.5 1.8 18 112-129 132-149 (305)
286 2i3b_A HCR-ntpase, human cance 89.9 0.084 2.9E-06 51.0 1.1 20 109-129 5-24 (189)
287 4a74_A DNA repair and recombin 89.9 0.075 2.6E-06 51.1 0.8 18 112-129 31-48 (231)
288 2cxx_A Probable GTP-binding pr 89.9 0.13 4.6E-06 47.4 2.4 54 588-642 82-148 (190)
289 2dby_A GTP-binding protein; GD 89.8 0.084 2.9E-06 56.4 1.1 22 108-130 4-25 (368)
290 1g29_1 MALK, maltose transport 89.8 0.087 3E-06 56.4 1.2 18 112-129 35-52 (372)
291 3aez_A Pantothenate kinase; tr 89.8 0.1 3.6E-06 54.3 1.8 24 106-129 89-113 (312)
292 4bas_A ADP-ribosylation factor 89.6 0.25 8.5E-06 46.0 4.1 73 533-634 60-143 (199)
293 2gza_A Type IV secretion syste 89.5 0.098 3.3E-06 55.5 1.3 24 106-129 174-198 (361)
294 3rlf_A Maltose/maltodextrin im 89.3 0.13 4.4E-06 55.3 2.1 18 112-129 35-52 (381)
295 2yyz_A Sugar ABC transporter, 89.3 0.13 4.6E-06 54.7 2.1 18 112-129 35-52 (359)
296 2it1_A 362AA long hypothetical 89.2 0.13 4.6E-06 54.8 2.1 18 112-129 35-52 (362)
297 1z47_A CYSA, putative ABC-tran 89.1 0.12 4E-06 55.1 1.6 18 112-129 47-64 (355)
298 3kta_A Chromosome segregation 89.1 0.14 4.7E-06 47.8 1.8 23 106-128 26-48 (182)
299 1v43_A Sugar-binding transport 88.9 0.14 4.9E-06 54.7 2.1 18 112-129 43-60 (372)
300 3fvq_A Fe(3+) IONS import ATP- 88.9 0.13 4.5E-06 54.9 1.8 18 112-129 36-53 (359)
301 3qf4_B Uncharacterized ABC tra 88.9 0.15 5.2E-06 57.6 2.4 18 112-129 387-404 (598)
302 2pt7_A CAG-ALFA; ATPase, prote 88.9 0.12 4E-06 54.3 1.3 18 112-129 177-194 (330)
303 2ewv_A Twitching motility prot 88.7 0.14 4.8E-06 54.6 1.8 18 112-129 142-159 (372)
304 1upt_A ARL1, ADP-ribosylation 88.6 0.37 1.3E-05 43.4 4.4 54 588-641 74-131 (171)
305 2bdt_A BH3686; alpha-beta prot 88.6 0.12 4.2E-06 48.6 1.1 17 112-128 8-24 (189)
306 3gd7_A Fusion complex of cysti 88.6 0.14 4.9E-06 55.1 1.8 18 112-129 53-70 (390)
307 1lw7_A Transcriptional regulat 88.5 0.1 3.5E-06 55.0 0.6 20 109-129 174-193 (365)
308 3b5x_A Lipid A export ATP-bind 88.5 0.15 5.2E-06 57.4 2.0 18 112-129 375-392 (582)
309 3sjy_A Translation initiation 88.5 0.33 1.1E-05 51.9 4.6 84 534-647 73-158 (403)
310 1rj9_A FTSY, signal recognitio 88.4 0.12 4.2E-06 53.6 1.1 18 112-129 108-125 (304)
311 4f4c_A Multidrug resistance pr 88.4 0.11 3.9E-06 64.1 1.0 18 112-129 1111-1128(1321)
312 3ec2_A DNA replication protein 88.3 0.14 4.6E-06 47.9 1.2 22 107-129 40-61 (180)
313 2qor_A Guanylate kinase; phosp 88.2 0.18 6.1E-06 48.3 2.0 18 112-129 18-35 (204)
314 1ixz_A ATP-dependent metallopr 88.2 0.14 4.7E-06 50.7 1.2 23 106-129 50-72 (254)
315 1ex7_A Guanylate kinase; subst 88.1 0.17 5.8E-06 48.9 1.9 21 108-129 4-24 (186)
316 3d31_A Sulfate/molybdate ABC t 88.0 0.13 4.4E-06 54.6 0.9 18 112-129 32-49 (348)
317 3jvv_A Twitching mobility prot 87.8 0.14 4.7E-06 54.5 1.1 18 112-129 129-146 (356)
318 2ehv_A Hypothetical protein PH 87.8 0.15 5.2E-06 49.5 1.3 17 112-128 36-52 (251)
319 2jeo_A Uridine-cytidine kinase 87.7 0.18 6E-06 50.0 1.7 24 106-129 24-48 (245)
320 2kjq_A DNAA-related protein; s 87.6 0.14 4.7E-06 47.3 0.8 22 107-129 38-59 (149)
321 2vp4_A Deoxynucleoside kinase; 87.6 0.23 7.8E-06 48.7 2.4 24 106-129 19-43 (230)
322 4eun_A Thermoresistant glucoki 87.5 0.18 6.1E-06 48.2 1.5 18 112-129 35-52 (200)
323 1oxx_K GLCV, glucose, ABC tran 87.5 0.12 4E-06 55.0 0.3 18 112-129 37-54 (353)
324 3qf4_A ABC transporter, ATP-bi 87.2 0.16 5.4E-06 57.4 1.1 18 112-129 375-392 (587)
325 2bbw_A Adenylate kinase 4, AK4 86.9 0.21 7.2E-06 49.3 1.7 16 112-127 33-48 (246)
326 2x8a_A Nuclear valosin-contain 86.8 0.18 6.3E-06 51.2 1.2 23 106-129 45-67 (274)
327 3b9q_A Chloroplast SRP recepto 86.7 0.21 7.3E-06 51.7 1.7 18 112-129 106-123 (302)
328 1iy2_A ATP-dependent metallopr 86.3 0.2 6.9E-06 50.4 1.3 23 106-129 74-96 (278)
329 2yl4_A ATP-binding cassette SU 86.2 0.25 8.4E-06 55.8 2.0 18 112-129 376-393 (595)
330 2oap_1 GSPE-2, type II secreti 86.0 0.23 7.7E-06 55.4 1.5 18 112-129 266-283 (511)
331 2atx_A Small GTP binding prote 85.8 1.3 4.4E-05 41.1 6.5 73 532-633 62-137 (194)
332 1kag_A SKI, shikimate kinase I 85.8 0.22 7.5E-06 45.8 1.1 21 108-129 7-27 (173)
333 3zvr_A Dynamin-1; hydrolase, D 85.7 0.45 1.5E-05 55.6 3.9 80 533-635 147-234 (772)
334 1yqt_A RNAse L inhibitor; ATP- 85.7 0.3 1E-05 54.6 2.4 18 112-129 53-70 (538)
335 3e70_C DPA, signal recognition 85.7 0.25 8.6E-06 51.9 1.6 24 106-129 128-152 (328)
336 1nij_A Hypothetical protein YJ 85.7 0.18 6E-06 52.4 0.4 19 112-130 10-28 (318)
337 1e69_A Chromosome segregation 85.6 0.28 9.6E-06 50.8 2.0 23 106-128 24-46 (322)
338 2yhs_A FTSY, cell division pro 85.6 0.26 9E-06 54.8 1.8 18 112-129 299-316 (503)
339 2x77_A ADP-ribosylation factor 85.5 0.5 1.7E-05 43.8 3.4 47 588-634 89-139 (189)
340 3b60_A Lipid A export ATP-bind 85.4 0.26 9.1E-06 55.4 1.7 18 112-129 375-392 (582)
341 2fv8_A H6, RHO-related GTP-bin 85.3 0.32 1.1E-05 46.2 2.0 47 589-635 97-146 (207)
342 4a82_A Cystic fibrosis transme 85.3 0.29 1E-05 55.0 2.0 18 112-129 373-390 (578)
343 3ozx_A RNAse L inhibitor; ATP 85.2 0.33 1.1E-05 54.4 2.4 18 112-129 31-48 (538)
344 2h17_A ADP-ribosylation factor 85.1 0.57 2E-05 43.2 3.7 44 589-632 89-136 (181)
345 3llu_A RAS-related GTP-binding 85.1 0.99 3.4E-05 42.3 5.4 48 589-638 96-149 (196)
346 2npi_A Protein CLP1; CLP1-PCF1 85.1 0.25 8.6E-06 54.3 1.3 24 106-129 137-161 (460)
347 3uie_A Adenylyl-sulfate kinase 85.0 0.29 1E-05 46.6 1.6 24 106-129 24-48 (200)
348 1xjc_A MOBB protein homolog; s 85.0 0.3 1E-05 46.6 1.6 22 107-129 6-27 (169)
349 3ozx_A RNAse L inhibitor; ATP 84.9 0.29 9.8E-06 54.9 1.7 18 112-129 300-317 (538)
350 1sq5_A Pantothenate kinase; P- 84.9 0.27 9.2E-06 50.7 1.4 24 106-129 79-103 (308)
351 2g6b_A RAS-related protein RAB 84.9 1.3 4.4E-05 40.2 5.9 43 589-632 84-130 (180)
352 3euj_A Chromosome partition pr 84.8 0.25 8.5E-06 54.8 1.1 18 112-129 35-52 (483)
353 3q5d_A Atlastin-1; G protein, 84.7 0.37 1.2E-05 52.9 2.4 18 112-129 73-90 (447)
354 1p9r_A General secretion pathw 84.7 0.25 8.7E-06 53.6 1.1 18 112-129 173-190 (418)
355 3ux8_A Excinuclease ABC, A sub 84.6 0.34 1.2E-05 55.4 2.2 16 112-127 354-369 (670)
356 3j16_B RLI1P; ribosome recycli 84.4 0.37 1.3E-05 54.8 2.4 18 112-129 109-126 (608)
357 4aby_A DNA repair protein RECN 84.2 0.16 5.3E-06 54.1 -0.8 23 106-128 60-82 (415)
358 1f2t_A RAD50 ABC-ATPase; DNA d 84.2 0.36 1.2E-05 44.4 1.8 22 106-127 23-44 (149)
359 2p67_A LAO/AO transport system 84.2 0.3 1E-05 51.2 1.4 56 196-256 169-225 (341)
360 1knq_A Gluconate kinase; ALFA/ 84.1 0.35 1.2E-05 44.7 1.6 18 112-129 14-31 (175)
361 2fh5_B SR-beta, signal recogni 84.1 0.39 1.3E-05 45.6 2.0 31 616-646 113-143 (214)
362 2og2_A Putative signal recogni 84.0 0.34 1.2E-05 51.6 1.7 18 112-129 163-180 (359)
363 1rz3_A Hypothetical protein rb 83.9 0.27 9.3E-06 47.1 0.8 18 112-129 28-45 (201)
364 3j16_B RLI1P; ribosome recycli 83.8 0.33 1.1E-05 55.2 1.6 21 108-129 381-401 (608)
365 3tr5_A RF-3, peptide chain rel 83.6 0.84 2.9E-05 51.0 4.8 69 535-634 81-150 (528)
366 2xex_A Elongation factor G; GT 83.4 0.58 2E-05 54.0 3.4 68 535-633 74-142 (693)
367 3bk7_A ABC transporter ATP-bin 83.2 0.45 1.5E-05 54.1 2.4 18 112-129 123-140 (607)
368 3bwd_D RAC-like GTP-binding pr 83.2 0.66 2.2E-05 42.3 3.1 45 589-633 80-127 (182)
369 2w0m_A SSO2452; RECA, SSPF, un 83.0 0.37 1.2E-05 46.0 1.3 18 112-129 29-46 (235)
370 2qt1_A Nicotinamide riboside k 82.9 0.47 1.6E-05 45.2 2.0 18 112-129 27-44 (207)
371 1r8s_A ADP-ribosylation factor 82.8 0.65 2.2E-05 41.6 2.9 44 589-633 68-116 (164)
372 1cke_A CK, MSSA, protein (cyti 82.8 0.4 1.4E-05 46.1 1.5 21 108-129 8-28 (227)
373 2gco_A H9, RHO-related GTP-bin 82.7 0.6 2.1E-05 44.0 2.7 47 589-635 97-146 (201)
374 1lv7_A FTSH; alpha/beta domain 82.6 0.38 1.3E-05 47.5 1.3 23 106-129 46-68 (257)
375 3gee_A MNME, tRNA modification 82.5 1.4 4.6E-05 48.6 5.8 46 588-636 312-361 (476)
376 2h57_A ADP-ribosylation factor 82.4 0.73 2.5E-05 42.7 3.1 53 589-641 91-149 (190)
377 4e22_A Cytidylate kinase; P-lo 82.2 0.54 1.8E-05 46.9 2.3 22 106-127 26-48 (252)
378 3cb4_D GTP-binding protein LEP 82.2 1.1 3.7E-05 50.9 5.0 70 532-632 67-137 (599)
379 1gtv_A TMK, thymidylate kinase 82.1 0.21 7E-06 47.6 -0.8 21 108-129 3-23 (214)
380 1cr0_A DNA primase/helicase; R 82.1 0.42 1.4E-05 48.4 1.4 18 112-129 41-58 (296)
381 1qhl_A Protein (cell division 81.8 0.24 8.3E-06 49.3 -0.5 18 112-129 33-50 (227)
382 3t61_A Gluconokinase; PSI-biol 81.8 0.47 1.6E-05 45.1 1.5 21 108-129 21-41 (202)
383 3kb2_A SPBC2 prophage-derived 81.7 0.48 1.6E-05 43.1 1.6 18 112-129 7-24 (173)
384 3lw7_A Adenylate kinase relate 81.6 0.49 1.7E-05 42.8 1.5 17 109-126 5-21 (179)
385 3tqc_A Pantothenate kinase; bi 81.5 0.46 1.6E-05 49.8 1.5 18 112-129 98-115 (321)
386 3bk7_A ABC transporter ATP-bin 81.4 0.48 1.6E-05 53.9 1.7 18 112-129 388-405 (607)
387 1yqt_A RNAse L inhibitor; ATP- 81.3 0.48 1.7E-05 53.0 1.7 18 112-129 318-335 (538)
388 3g5u_A MCG1178, multidrug resi 81.3 0.41 1.4E-05 59.0 1.2 18 112-129 422-439 (1284)
389 1moz_A ARL1, ADP-ribosylation 81.1 0.96 3.3E-05 41.3 3.4 45 588-633 85-134 (183)
390 1zj6_A ADP-ribosylation factor 81.0 1.1 3.7E-05 41.4 3.8 44 589-632 84-131 (187)
391 1n0w_A DNA repair protein RAD5 81.0 0.45 1.5E-05 46.0 1.1 19 112-130 30-48 (243)
392 1mh1_A RAC1; GTP-binding, GTPa 81.0 0.55 1.9E-05 42.9 1.7 73 532-633 49-124 (186)
393 2ywe_A GTP-binding protein LEP 80.9 0.99 3.4E-05 51.3 4.1 70 532-632 69-139 (600)
394 3cph_A RAS-related protein SEC 80.5 1.5 5.1E-05 41.1 4.6 42 589-631 93-138 (213)
395 2cvh_A DNA repair and recombin 80.5 0.69 2.4E-05 43.9 2.2 17 112-128 26-42 (220)
396 1ksh_A ARF-like protein 2; sma 80.5 0.77 2.6E-05 42.2 2.5 48 588-636 85-137 (186)
397 2r62_A Cell division protease 80.4 0.7 2.4E-05 45.7 2.3 23 106-129 45-67 (268)
398 2obl_A ESCN; ATPase, hydrolase 80.3 0.48 1.6E-05 50.1 1.2 19 112-130 77-95 (347)
399 2c78_A Elongation factor TU-A; 80.3 1.1 3.8E-05 47.8 4.0 78 535-643 74-154 (405)
400 3g5u_A MCG1178, multidrug resi 80.3 0.58 2E-05 57.7 2.1 18 112-129 1065-1082(1284)
401 2iw3_A Elongation factor 3A; a 80.3 0.37 1.3E-05 57.7 0.3 18 112-129 705-722 (986)
402 1odf_A YGR205W, hypothetical 3 80.1 0.57 2E-05 48.2 1.6 18 112-129 37-54 (290)
403 3qks_A DNA double-strand break 80.0 0.63 2.2E-05 45.0 1.8 22 106-127 23-44 (203)
404 1jjv_A Dephospho-COA kinase; P 80.0 0.61 2.1E-05 44.3 1.7 17 112-128 8-24 (206)
405 2jaq_A Deoxyguanosine kinase; 80.0 0.58 2E-05 43.8 1.5 20 109-129 4-23 (205)
406 4f4c_A Multidrug resistance pr 79.9 0.44 1.5E-05 58.9 0.8 18 112-129 450-467 (1321)
407 1ko7_A HPR kinase/phosphatase; 79.9 0.38 1.3E-05 50.4 0.2 22 107-129 146-167 (314)
408 1jny_A EF-1-alpha, elongation 79.8 1.3 4.5E-05 47.8 4.4 79 535-644 83-174 (435)
409 1ega_A Protein (GTP-binding pr 79.7 1.9 6.6E-05 44.1 5.5 48 588-638 88-137 (301)
410 2dpy_A FLII, flagellum-specifi 79.6 0.52 1.8E-05 51.4 1.2 19 112-130 163-181 (438)
411 3vqt_A RF-3, peptide chain rel 79.6 2 6.9E-05 48.1 6.0 55 198-254 125-180 (548)
412 1jbk_A CLPB protein; beta barr 79.5 0.58 2E-05 42.6 1.3 22 107-129 45-66 (195)
413 2if2_A Dephospho-COA kinase; a 79.5 0.48 1.6E-05 44.9 0.7 19 109-128 5-23 (204)
414 1in4_A RUVB, holliday junction 79.5 0.58 2E-05 48.6 1.4 21 108-129 54-74 (334)
415 1z2a_A RAS-related protein RAB 79.4 1.5 5.2E-05 39.0 4.1 52 589-641 78-137 (168)
416 3bc1_A RAS-related protein RAB 79.2 1.4 4.7E-05 40.3 3.8 43 589-632 94-141 (195)
417 3con_A GTPase NRAS; structural 79.1 1.9 6.4E-05 39.7 4.7 24 618-641 126-153 (190)
418 1ly1_A Polynucleotide kinase; 79.1 0.65 2.2E-05 42.5 1.5 19 109-128 6-24 (181)
419 3tw8_B RAS-related protein RAB 79.0 2.5 8.4E-05 38.1 5.4 43 589-631 82-126 (181)
420 1zun_B Sulfate adenylate trans 78.9 2.1 7.2E-05 46.2 5.7 79 535-644 103-185 (434)
421 1n0u_A EF-2, elongation factor 78.7 1.3 4.4E-05 52.3 4.2 68 533-631 95-163 (842)
422 1kht_A Adenylate kinase; phosp 78.6 0.68 2.3E-05 42.8 1.5 17 112-128 9-25 (192)
423 2h5e_A Peptide chain release f 78.5 1.9 6.6E-05 48.0 5.4 69 535-634 81-150 (529)
424 3reg_A RHO-like small GTPase; 78.5 1.3 4.6E-05 41.0 3.5 54 589-642 95-158 (194)
425 4gzl_A RAS-related C3 botulinu 78.5 1.3 4.6E-05 41.8 3.6 74 532-634 74-150 (204)
426 2gf9_A RAS-related protein RAB 78.4 1.9 6.4E-05 39.9 4.5 42 589-632 95-141 (189)
427 3geh_A MNME, tRNA modification 78.2 1.7 5.7E-05 47.7 4.7 45 588-635 303-347 (462)
428 3qf7_A RAD50; ABC-ATPase, ATPa 78.2 0.74 2.5E-05 48.7 1.8 16 112-127 29-44 (365)
429 2elf_A Protein translation elo 78.2 2 6.9E-05 45.5 5.2 79 536-647 60-141 (370)
430 3qq5_A Small GTP-binding prote 77.9 1.2 4.2E-05 48.3 3.5 45 588-636 113-158 (423)
431 2yc2_C IFT27, small RAB-relate 77.9 1.2 4.2E-05 41.4 3.1 42 589-632 97-146 (208)
432 1qhx_A CPT, protein (chloramph 77.5 0.72 2.5E-05 42.5 1.3 18 112-129 9-26 (178)
433 2yvu_A Probable adenylyl-sulfa 77.4 1 3.4E-05 42.1 2.3 24 106-129 12-36 (186)
434 2j1l_A RHO-related GTP-binding 77.3 1.3 4.6E-05 42.1 3.2 48 588-635 105-155 (214)
435 1yrb_A ATP(GTP)binding protein 77.0 1.1 3.8E-05 43.9 2.6 49 198-247 139-193 (262)
436 3vaa_A Shikimate kinase, SK; s 77.0 0.93 3.2E-05 43.0 2.0 21 108-129 28-48 (199)
437 1wb1_A Translation elongation 77.0 1.1 3.8E-05 49.2 2.9 55 589-645 97-152 (482)
438 1kk1_A EIF2gamma; initiation o 76.8 1.4 4.8E-05 47.0 3.5 56 588-645 106-164 (410)
439 1nks_A Adenylate kinase; therm 76.8 0.73 2.5E-05 42.6 1.2 20 109-129 5-24 (194)
440 2px0_A Flagellar biosynthesis 76.6 0.65 2.2E-05 47.9 0.8 20 109-129 109-128 (296)
441 2iw3_A Elongation factor 3A; a 76.5 0.61 2.1E-05 55.9 0.6 19 112-130 467-485 (986)
442 2pez_A Bifunctional 3'-phospho 76.4 0.99 3.4E-05 41.9 1.9 18 112-129 11-28 (179)
443 2q3h_A RAS homolog gene family 76.3 2.2 7.5E-05 39.7 4.3 72 532-632 64-138 (201)
444 2w58_A DNAI, primosome compone 76.2 0.78 2.7E-05 43.3 1.2 22 107-129 56-77 (202)
445 1g16_A RAS-related protein SEC 75.9 4.3 0.00015 36.1 6.0 53 589-641 76-135 (170)
446 3r7w_A Gtpase1, GTP-binding pr 75.8 1.3 4.5E-05 45.4 2.9 49 589-637 81-134 (307)
447 2fn4_A P23, RAS-related protei 75.8 1.7 5.7E-05 39.3 3.3 16 617-632 113-128 (181)
448 2rhm_A Putative kinase; P-loop 75.7 0.83 2.8E-05 42.5 1.2 18 112-129 11-28 (193)
449 3mca_A HBS1, elongation factor 75.4 1.2 3.9E-05 50.5 2.5 83 536-647 255-346 (592)
450 1sxj_E Activator 1 40 kDa subu 75.4 0.76 2.6E-05 47.3 0.9 21 108-129 39-59 (354)
451 1z08_A RAS-related protein RAB 75.3 2.4 8.3E-05 37.8 4.2 43 588-632 78-125 (170)
452 2b6h_A ADP-ribosylation factor 75.3 1.3 4.5E-05 41.5 2.5 70 534-633 71-145 (192)
453 2rdo_7 EF-G, elongation factor 75.3 2.2 7.6E-05 49.2 4.9 70 533-633 79-149 (704)
454 3clv_A RAB5 protein, putative; 75.1 3.2 0.00011 37.9 5.1 42 589-632 117-160 (208)
455 1wms_A RAB-9, RAB9, RAS-relate 75.1 3.3 0.00011 37.2 5.1 15 617-631 115-129 (177)
456 1x3s_A RAS-related protein RAB 75.0 2.7 9.3E-05 38.5 4.6 42 589-631 88-134 (195)
457 1svm_A Large T antigen; AAA+ f 75.0 0.81 2.8E-05 49.0 1.0 22 107-129 171-192 (377)
458 3p26_A Elongation factor 1 alp 74.5 2.6 8.7E-05 46.2 4.9 82 534-644 109-199 (483)
459 1gvn_B Zeta; postsegregational 74.5 0.94 3.2E-05 46.3 1.3 18 112-129 39-56 (287)
460 2j37_W Signal recognition part 74.4 0.91 3.1E-05 50.5 1.3 41 197-240 214-255 (504)
461 1zd9_A ADP-ribosylation factor 74.2 1 3.5E-05 41.8 1.4 44 589-633 91-139 (188)
462 2ce2_X GTPase HRAS; signaling 74.1 2.2 7.4E-05 37.6 3.5 23 618-640 108-134 (166)
463 2o5v_A DNA replication and rep 74.0 1.1 3.9E-05 47.5 1.8 23 106-128 26-48 (359)
464 3cm0_A Adenylate kinase; ATP-b 73.9 1.1 3.8E-05 41.5 1.5 17 112-128 10-26 (186)
465 2lkc_A Translation initiation 73.9 3.7 0.00013 37.0 5.1 43 589-633 79-122 (178)
466 2a5j_A RAS-related protein RAB 73.9 4.3 0.00015 37.5 5.7 50 589-640 94-153 (191)
467 2dyk_A GTP-binding protein; GT 73.8 1.4 4.9E-05 39.0 2.3 44 588-633 79-123 (161)
468 2yv5_A YJEQ protein; hydrolase 73.8 11 0.00038 38.5 9.2 69 197-266 80-150 (302)
469 3iij_A Coilin-interacting nucl 73.5 1.3 4.5E-05 41.0 2.0 21 108-129 14-34 (180)
470 1w1w_A Structural maintenance 73.4 1.1 3.8E-05 48.2 1.6 18 112-129 32-49 (430)
471 1vht_A Dephospho-COA kinase; s 73.0 1.4 4.7E-05 42.3 2.0 17 112-128 10-26 (218)
472 1f60_A Elongation factor EEF1A 72.9 1.8 6.3E-05 47.1 3.2 25 620-644 147-173 (458)
473 3qkt_A DNA double-strand break 72.8 1.3 4.3E-05 46.2 1.8 22 106-127 23-44 (339)
474 3t5g_A GTP-binding protein RHE 72.7 3.9 0.00013 37.1 5.0 24 618-641 111-139 (181)
475 3trf_A Shikimate kinase, SK; a 72.6 1.3 4.3E-05 41.1 1.6 22 107-129 7-28 (185)
476 2p65_A Hypothetical protein PF 72.6 0.89 3.1E-05 41.4 0.5 22 107-129 45-66 (187)
477 1z06_A RAS-related protein RAB 72.5 3.2 0.00011 38.2 4.4 51 589-640 94-154 (189)
478 2v54_A DTMP kinase, thymidylat 72.5 1.5 5.1E-05 41.2 2.1 18 112-129 10-27 (204)
479 2v3c_C SRP54, signal recogniti 72.5 1.2 4E-05 48.6 1.5 21 108-129 102-122 (432)
480 1z0f_A RAB14, member RAS oncog 72.4 3.2 0.00011 37.2 4.3 72 532-632 60-134 (179)
481 2z0h_A DTMP kinase, thymidylat 72.4 1.3 4.3E-05 41.3 1.6 20 109-129 4-23 (197)
482 1nlf_A Regulatory protein REPA 72.3 0.89 3.1E-05 45.6 0.5 17 112-128 36-52 (279)
483 2j0v_A RAC-like GTP-binding pr 72.2 1.8 6.1E-05 40.8 2.6 72 532-632 53-127 (212)
484 2plr_A DTMP kinase, probable t 72.1 1.3 4.4E-05 41.7 1.5 20 109-129 8-27 (213)
485 1m2o_B GTP-binding protein SAR 72.1 5.7 0.00019 36.9 6.1 43 589-632 91-138 (190)
486 3r7w_B Gtpase2, GTP-binding pr 71.5 4.7 0.00016 42.4 5.8 75 535-638 45-126 (331)
487 1ky3_A GTP-binding protein YPT 71.4 4 0.00014 36.7 4.7 15 617-631 117-131 (182)
488 3bos_A Putative DNA replicatio 71.3 1.3 4.5E-05 42.1 1.4 22 107-129 54-75 (242)
489 2efe_B Small GTP-binding prote 71.3 3.4 0.00012 37.3 4.2 42 589-632 85-131 (181)
490 2ius_A DNA translocase FTSK; n 71.2 1.2 4.2E-05 49.6 1.3 18 112-129 173-190 (512)
491 2p5s_A RAS and EF-hand domain 71.2 2.4 8.2E-05 39.6 3.2 71 532-631 73-146 (199)
492 2qz4_A Paraplegin; AAA+, SPG7, 71.0 1.4 4.9E-05 42.9 1.7 23 106-129 40-62 (262)
493 1m7b_A RND3/RHOE small GTP-bin 70.9 5 0.00017 36.8 5.3 43 589-631 79-124 (184)
494 2wwf_A Thymidilate kinase, put 70.9 1.6 5.4E-05 41.3 1.9 18 112-129 16-33 (212)
495 1vma_A Cell division protein F 70.8 1.2 4.1E-05 46.2 1.1 18 112-129 110-127 (306)
496 2y8e_A RAB-protein 6, GH09086P 70.8 3.5 0.00012 37.0 4.2 70 532-632 59-133 (179)
497 2qby_A CDC6 homolog 1, cell di 70.8 1.2 4E-05 45.8 1.0 18 112-129 51-68 (386)
498 4djt_A GTP-binding nuclear pro 70.7 1.8 6.3E-05 40.9 2.3 45 589-633 85-132 (218)
499 4ad8_A DNA repair protein RECN 70.6 0.74 2.5E-05 50.9 -0.6 24 104-127 58-81 (517)
500 1r5b_A Eukaryotic peptide chai 70.6 6.5 0.00022 42.9 6.9 82 537-647 122-214 (467)
No 1
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=325.44 Aligned_cols=266 Identities=61% Similarity=0.964 Sum_probs=185.0
Q ss_pred ccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCCC--CCCCcEEEEEEEEEeeCCcee--e
Q psy8479 87 WVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPSP--HSLPSVKLKAHTYELQENNVK--L 159 (650)
Q Consensus 87 ~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s~--~~~~T~~I~~~~~~l~e~g~~--L 159 (650)
.++++..|-+-....++ +|..|+ ||+||+|||||||+|++..+...... .++.+. ....+.+++.++. +
T Consensus 22 ~~~y~~~~L~~vsl~i~--~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~--~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 22 HVGFDSLPDQLVNKSVS--QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL--QSNTYDLQESNVRLKL 97 (427)
T ss_dssp CC-CC--CHHHHHHSCC---CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEE--EEEEEEEEC--CEEEE
T ss_pred EEEECCeecCCCceEec--CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceE--eeEEEEeecCcccccc
Confidence 56666666333444455 898865 99999999999999999865433222 222222 2223333443321 1
Q ss_pred ------------c-chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCC
Q psy8479 160 ------------K-EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKV 226 (650)
Q Consensus 160 ------------~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~v 226 (650)
. ..+|.+|++||..+|..||.++..+.|.+..+.|.|||||+|||.|++|++++.|+++|++|+..+
T Consensus 98 tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~ 177 (427)
T 2qag_B 98 TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKV 177 (427)
T ss_dssp EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCS
T ss_pred chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 1 358999999999999999999888887654678999999999999999999999999999999999
Q ss_pred CeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCCchhHHHHHHHhhhccCCCCCccccccccCcccccCCCCC
Q psy8479 227 NIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSS 306 (650)
Q Consensus 227 nvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d~~~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s 306 (650)
|||||++|+|+||+.|+..+++.|++.|..+||.||.|+.++++..+.+..++.. +| ||| |||
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d~~~~~~~~~~~~~--~P---------Fav-vgs----- 240 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAH--LP---------FAV-IGS----- 240 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-----CCSHHHHHTTC---C---------CBC-CC------
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCchhHHHHHhhhcCC--CC---------eEE-ECC-----
Confidence 9999999999999999999999999999999999999997766555566666654 99 999 898
Q ss_pred CCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 307 PPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386 (650)
Q Consensus 307 ~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeee 386 (650)
...+.++|+.|+++.|+| |.
T Consensus 241 -----------~~~~~~~g~~vrgR~ypW-------G~------------------------------------------ 260 (427)
T 2qag_B 241 -----------TEELKIGNKMMRARQYPW-------GT------------------------------------------ 260 (427)
T ss_dssp ------------------CCCC-----CC-------CC------------------------------------------
T ss_pred -----------CCeeeeCCcEEEEecCCC-------ce------------------------------------------
Confidence 344566899999999999 54
Q ss_pred hhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhh
Q psy8479 387 EEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445 (650)
Q Consensus 387 eeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~ 445 (650)
-+.+...|+||..|+.+++++|++++++.++..|||.||..++....
T Consensus 261 ------------~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~ 307 (427)
T 2qag_B 261 ------------VQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMG 307 (427)
T ss_dssp ------------CC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred ------------EEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33445569999999999999999999999999999999999997643
No 2
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=100.00 E-value=4.9e-34 Score=293.56 Aligned_cols=247 Identities=41% Similarity=0.716 Sum_probs=187.7
Q ss_pred CCCceee---cCCCCCChhhHhhhhhCcCCCCCC----CCCCCCcEEEEEEEEEeeCCce--eec-------------ch
Q psy8479 105 IPGKAYK---PCETGLGKSTLMDSLFNTSFESTP----SPHSLPSVKLKAHTYELQENNV--KLK-------------ED 162 (650)
Q Consensus 105 k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~----s~~~~~T~~I~~~~~~l~e~g~--~L~-------------~~ 162 (650)
|+|+.|+ ||.+|+|||||||+||+.+..... +.+..+|+.+....+.+..+|. .+. ..
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 3799999 999999999999999998765532 2223445555555555555442 222 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHH
Q psy8479 163 SFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 163 ~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~E 242 (650)
+|.+|++||++||+.||.++..+.|. .+.|.|+|||||||.++++++++.|+++|++|...+|+|||++|+|.++..+
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~--~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRR--QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCC--SCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccc--cccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHH
Confidence 89999999999999999999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcEEeCCC-CchhHHHHHHHhhhccCCCCCccccccccCcccccCCCCCCCCcccccccccccc
Q psy8479 243 LQKFKTNIMTELTSNGVHIYEFPT-DDETMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLNILAMQKV 321 (650)
Q Consensus 243 l~~~K~~I~~~L~~~~I~if~f~~-d~~~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s~~~~~~~nil~~~~~ 321 (650)
+..+++.|++.+..++|.+|.|+. +++...++...+... +| |++ |+| ...+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~--~p---------~~v-v~s----------------~~~~ 213 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR--LP---------LAV-VGS----------------NTII 213 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT--CS---------EEC-CCC----------------CCC-
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC--CC---------cEE-EEe----------------eeEE
Confidence 999999999999999999999984 334455566666655 89 999 888 3345
Q ss_pred cCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhh
Q psy8479 322 PGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401 (650)
Q Consensus 322 ~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeeeeeeeeeeeeeeedE~ 401 (650)
+..|..++++.|+| +. -+.
T Consensus 214 ~~~~~~~~~r~y~w-------g~------------------------------------------------------~~v 232 (274)
T 3t5d_A 214 EVNGKRVRGRQYPW-------GV------------------------------------------------------AEV 232 (274)
T ss_dssp -------CEEECSS-------CE------------------------------------------------------EES
T ss_pred eeCCeEEEeeeccc-------ce------------------------------------------------------EEe
Confidence 66788899999999 43 334
Q ss_pred ccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhh
Q psy8479 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442 (650)
Q Consensus 402 e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~ 442 (650)
+...++||..|+..++++|++++++.++..|||.||++++.
T Consensus 233 e~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~ 273 (274)
T 3t5d_A 233 ENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273 (274)
T ss_dssp SCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45569999999999999999999999999999999998875
No 3
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=296.30 Aligned_cols=245 Identities=39% Similarity=0.652 Sum_probs=187.3
Q ss_pred ceee---cCCCCCChhhHhhhhhCcCCCCCCC-----CCCCCcEEEEEEEEEeeCCce--------------eec-chhH
Q psy8479 108 KAYK---PCETGLGKSTLMDSLFNTSFESTPS-----PHSLPSVKLKAHTYELQENNV--------------KLK-EDSF 164 (650)
Q Consensus 108 ~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s-----~~~~~T~~I~~~~~~l~e~g~--------------~L~-~~~w 164 (650)
|+|| ||+||+|||||||+|++.......+ ....++.......+.+++.++ .+. ..+|
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4566 9999999999999999975433210 011111111111222222221 111 5689
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHH
Q psy8479 165 KSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQ 244 (650)
Q Consensus 165 ~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~ 244 (650)
+.+..|+..++..++.++....+. +.+.+.|+|||||||.|.+|+|.++|+++|++|...+|+||||+|+|+||++|+.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~-qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARK-KRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCC-SSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccc-hhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHHHHH
Confidence 999999999999999998877776 3788999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEeCCCCch--hHHHHHHHhhhccCCCCCccccccccCcccccCCCCCCCCccccccccccccc
Q psy8479 245 KFKTNIMTELTSNGVHIYEFPTDDE--TMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLNILAMQKVP 322 (650)
Q Consensus 245 ~~K~~I~~~L~~~~I~if~f~~d~~--~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~~~s~~~~~~~nil~~~~~~ 322 (650)
.+|+.|++.|..++|.+|+|+..++ +....+..+. .+++| ||| ||| ...+.
T Consensus 160 ~~k~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~p---------fav-v~s----------------~~~~~ 212 (270)
T 3sop_A 160 EFKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIR-QESMP---------FAV-VGS----------------DKEYQ 212 (270)
T ss_dssp HHHHHHHHHHHHTTCCCSSCSCC---CHHHHHHHHHH-HTTCS---------EEC-CCC----------------CCEEE
T ss_pred HHHHHHHHHHHHcCccccCCCCCCcchHHHHHHHHHH-hcCCC---------eEE-Eec----------------ceEEE
Confidence 9999999999999999999874221 1112222322 23499 999 898 44456
Q ss_pred CCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhc
Q psy8479 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402 (650)
Q Consensus 323 ~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeeeeeeeeeeeeeeeeeedE~e 402 (650)
.+|+.|.++.|+| |. -+.+
T Consensus 213 ~~g~~~~~r~y~w-------g~------------------------------------------------------~~v~ 231 (270)
T 3sop_A 213 VNGKRVLGRKTPW-------GI------------------------------------------------------IEVE 231 (270)
T ss_dssp ETTEEEEEECCCC--------C------------------------------------------------------EESS
T ss_pred eCCcEEEEeecCc-------eE------------------------------------------------------EEeC
Confidence 6899999999999 55 3445
Q ss_pred cCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhh
Q psy8479 403 NEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRL 441 (650)
Q Consensus 403 ~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~ 441 (650)
...|+||..|+.+++++|++++++.++..|||.||..++
T Consensus 232 n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 232 NLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp CTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567999999999999999999999999999999998764
No 4
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.98 E-value=1.1e-32 Score=295.81 Aligned_cols=268 Identities=40% Similarity=0.678 Sum_probs=196.0
Q ss_pred CccCccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCC-----CCCCCCcEEEEEEEEEeeC
Q psy8479 83 FSRCWVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTP-----SPHSLPSVKLKAHTYELQE 154 (650)
Q Consensus 83 ~~~~~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~-----s~~~~~T~~I~~~~~~l~e 154 (650)
...++||+.+||.|+.++.++ +|+.|+ ||.+|+|||||||+||+....... +....+|+.+....+.+..
T Consensus 13 ~~~~~v~~~~l~~~~~~k~~~--~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~ 90 (361)
T 2qag_A 13 ETPGYVGFANLPNQVHRKSVK--KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE 90 (361)
T ss_dssp --------CCHHHHHHTHHHH--HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC---
T ss_pred CCCceEEeccchHHhCCeeec--CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec
Confidence 446899999999999999888 899998 999999999999999987554321 1223356666555555554
Q ss_pred Cce--eec-------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHH
Q psy8479 155 NNV--KLK-------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCM 219 (650)
Q Consensus 155 ~g~--~L~-------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~m 219 (650)
++. .|. ..+|.+|..||++||+.|+.++..+.|. .+.|.|||||+|+|.++++++.++|+.+|
T Consensus 91 ~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~--~~~d~rv~~~vy~I~~~~~~l~~~d~~~~ 168 (361)
T 2qag_A 91 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRR--HIIDNRVHCCFYFISPFGHGLKPLDVAFM 168 (361)
T ss_dssp -CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC---CCCCCCCEEEEEECSSSSSCCHHHHHHH
T ss_pred CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccc--cccCCceEEEEEEEecCCCCcchhHHHHH
Confidence 443 222 2689999999999999999999988886 68999999999999999999999999999
Q ss_pred HHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCC----CchhHHHHHHHhhhccCCCCCcccccccc
Q psy8479 220 KKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPT----DDETMSDVNAAMTIFSSIPCDRSLIHTIF 295 (650)
Q Consensus 220 k~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~----d~~~~~~~~~~~~~~~~~P~~~~~~~t~~ 295 (650)
+.|+..+|+|||++|+|.++..++..++..+.+.+..+++.+|.++. +++.+..+...+... +| |
T Consensus 169 ~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~--ip---------~ 237 (361)
T 2qag_A 169 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKAS--IP---------F 237 (361)
T ss_dssp HHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHT--CS---------C
T ss_pred HHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhc--CC---------C
Confidence 99999999999999999999999999999999999999999998874 223344556666655 89 9
Q ss_pred CcccccCCCCCCCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 296 PPCLRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375 (650)
Q Consensus 296 ~~c~~st~~~s~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeE 375 (650)
++ ++| ...+...|+.+.++.|+| +.
T Consensus 238 ~v-v~s----------------~~~~~~~g~~~~gr~ypw-------g~------------------------------- 262 (361)
T 2qag_A 238 SV-VGS----------------NQLIEAKGKKVRGRLYPW-------GV------------------------------- 262 (361)
T ss_dssp EE-CCC----------------SEEC------CEEECCSS-------CC-------------------------------
T ss_pred CE-eCC----------------CCccccCCeEEEEEecCC-------ce-------------------------------
Confidence 99 888 334556788899999999 54
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhh
Q psy8479 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444 (650)
Q Consensus 376 eeEeeeeeeeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~ 444 (650)
-+.+...|+||..|+.+++ +|++++++.++..|||.||..++...
T Consensus 263 -----------------------~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~ 307 (361)
T 2qag_A 263 -----------------------VEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRG 307 (361)
T ss_dssp -----------------------EESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC---
T ss_pred -----------------------EecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556999999999999 99999999999999999999888653
No 5
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=292.92 Aligned_cols=267 Identities=39% Similarity=0.685 Sum_probs=184.0
Q ss_pred cCccCCCCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCCC----CCCCcEEEEEEEEEeeCCce
Q psy8479 85 RCWVNTRTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPSP----HSLPSVKLKAHTYELQENNV 157 (650)
Q Consensus 85 ~~~vG~~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s~----~~~~T~~I~~~~~~l~e~g~ 157 (650)
.+.+++.+|+.++.++.+. +|+.|+ ||+||+|||||||+|++......... ...+|..+....+.+++.++
T Consensus 9 ~~~l~~~~l~~~y~~~~vl--~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVK--RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp ------CCCCCCTTTTTCC---CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------
T ss_pred cCcEEEEecceeECCEEEe--cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCc
Confidence 3579999999998877666 899998 99999999999999999765322110 11223333222333333332
Q ss_pred e--ec-------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHh
Q psy8479 158 K--LK-------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKL 222 (650)
Q Consensus 158 ~--L~-------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L 222 (650)
. +. ..+|..|+.||+.+|..|+.++..+.|. .+.|.|+||||||+.|++++|.+.|+.+|+.|
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRa--l~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L 164 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRR--QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 164 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCC--CCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCCeeEEEEEecCcccCCCHHHHHHHHHH
Confidence 1 11 3579999999999999999888888887 57899999999999999999999999999999
Q ss_pred ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCC-chhHHHHHHHhhhccCCCCCccccccccCccccc
Q psy8479 223 DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTD-DETMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRS 301 (650)
Q Consensus 223 ~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d-~~~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~s 301 (650)
...+|+|||++|+|++++.++..+++.|++.+..++|.+|.|+.. ..+..++...+... +| |+| ++|
T Consensus 165 ~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~--iP---------fav-v~s 232 (418)
T 2qag_C 165 HEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR--LP---------LAV-VGS 232 (418)
T ss_dssp TTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------CC---------EEE-CC-
T ss_pred hccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh--CC---------cce-eec
Confidence 999999999999999999999999999999999999999999843 23333344444444 89 999 787
Q ss_pred CCCCCCCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 302 TSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381 (650)
Q Consensus 302 t~~~s~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeee 381 (650)
...+..+|+.++++.|+| +.
T Consensus 233 ----------------~~~~~~~g~~vr~R~y~w-------g~------------------------------------- 252 (418)
T 2qag_C 233 ----------------NTIIEVNGKRVRGRQYPW-------GV------------------------------------- 252 (418)
T ss_dssp ----------------------------CEECSS-------CE-------------------------------------
T ss_pred ----------------ceeEecCCceeecccccc-------eE-------------------------------------
Confidence 344556788899999999 54
Q ss_pred hhhhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhh
Q psy8479 382 EEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444 (650)
Q Consensus 382 eeeeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~ 444 (650)
-+.+...|.+|..|+.+++++|++++++.++..|||.||..++...
T Consensus 253 -----------------i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~ 298 (418)
T 2qag_C 253 -----------------AEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAV 298 (418)
T ss_dssp -----------------ECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC--
T ss_pred -----------------EEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 3445667999999999999999999999999999999999988654
No 6
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.96 E-value=9.4e-30 Score=266.48 Aligned_cols=261 Identities=41% Similarity=0.690 Sum_probs=180.5
Q ss_pred CCCCcccccccccCCCCceee---cCCCCCChhhHhhhhhCcCCCCCCC-----CCCCCcEEEEEEEEEeeCCce--eec
Q psy8479 91 RTPPPNFLEKSWNFIPGKAYK---PCETGLGKSTLMDSLFNTSFESTPS-----PHSLPSVKLKAHTYELQENNV--KLK 160 (650)
Q Consensus 91 ~~lp~Q~~rk~~~~k~g~~Fn---VG~SGvGKSTlINtLf~~~~~~~~s-----~~~~~T~~I~~~~~~l~e~g~--~L~ 160 (650)
++|+.|+.++.+. +++.|+ ||++|+|||||||+|++........ ....+|..+....+.+++.++ .|.
T Consensus 2 ~~l~~~~~~~~~l--~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 2 SNLPNQVHRKSVK--KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ------------------CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEE
T ss_pred CCCcceECCEEEE--cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4678888887777 899998 9999999999999999874332211 011123222222333443332 111
Q ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCC
Q psy8479 161 -------------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVN 227 (650)
Q Consensus 161 -------------~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vn 227 (650)
..+|..++.||.+++..|+.+.+...|. .+.|.|+|||||++.|++++|.+.++++|+.+...+|
T Consensus 80 v~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rq--rv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~ 157 (301)
T 2qnr_A 80 VVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRR--HIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVN 157 (301)
T ss_dssp EEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCT--TCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhh--hhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCC
Confidence 1578999999999999999999888775 6889999999999999999999999999999998899
Q ss_pred eeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCCC----chhHHHHHHHhhhccCCCCCccccccccCcccccCC
Q psy8479 228 IIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTD----DETMSDVNAAMTIFSSIPCDRSLIHTIFPPCLRSTS 303 (650)
Q Consensus 228 vIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~d----~~~~~~~~~~~~~~~~~P~~~~~~~t~~~~c~~st~ 303 (650)
+++|++|+|.++..++..+++.+++.+..+++.+|.++.. ++.+..+...+... +| ||+ |||
T Consensus 158 iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~~v~e~f~~l~~~i~~~--~p---------~av-igs-- 223 (301)
T 2qnr_A 158 IVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKAS--IP---------FSV-VGS-- 223 (301)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------CHHHHHHHHTT--CS---------EEC-CCC--
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccccccHHHHHHHHHhhcC--CC---------ceE-ECC--
Confidence 9999999999999999999999999999999999998742 23334455555544 89 999 898
Q ss_pred CCCCCCcccccccccccccCCCCccccCCccccCcccCCCCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy8479 304 PSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383 (650)
Q Consensus 304 ~~s~~~~~~~nil~~~~~~~~~~ti~~~~~~~~~~~g~~~leeeee~eeeeeeeeeeeeeeeeeedeeeeeEeeEeeeee 383 (650)
...+..+|+.++++.|+| +.
T Consensus 224 --------------~~~~~~~g~~~~~r~y~w-------g~--------------------------------------- 243 (301)
T 2qnr_A 224 --------------NQLIEAKGKKVRGRLYPW-------GV--------------------------------------- 243 (301)
T ss_dssp --------------CCBCC-----CBEEEETT-------EE---------------------------------------
T ss_pred --------------CceEecCCcEEeeEcCCC-------ce---------------------------------------
Confidence 344566788899999999 54
Q ss_pred hhhhhhhhhHHHHHhhhhccCCCchhHHHHHHHHhchhhhhhhhhhhhhHHHHHHHhhhhhh
Q psy8479 384 EEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445 (650)
Q Consensus 384 eeeeeeeeeeeeeeedE~e~~~~~df~~l~~~~~~~~~~~~~~~~~~~~~e~dr~~~~~~~~ 445 (650)
.+.+...|+||..|+.+++ +|++++++.++..|||.||.+++.+..
T Consensus 244 ---------------~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~ 289 (301)
T 2qnr_A 244 ---------------VEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGG 289 (301)
T ss_dssp ---------------EETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC--
T ss_pred ---------------EeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455667999999999999 999999999999999999999997654
No 7
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.65 E-value=1.8e-17 Score=170.09 Aligned_cols=115 Identities=30% Similarity=0.395 Sum_probs=99.5
Q ss_pred cCccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHH
Q psy8479 531 DATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLV 610 (650)
Q Consensus 531 ~~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~ 610 (650)
.++..+.|+||||||||+++++..+| .++.+||++||..+ ...+.+.++..+.|+|+|||||| +.|++|++++.|++
T Consensus 60 ~~~~~~~l~liDTpG~~d~~~~~~~~-~~i~~~i~~~~~~~-l~~~~~~~r~~~~d~r~~~~l~~-i~~~~~~~~~~d~~ 136 (274)
T 3t5d_A 60 EGGVQLLLTIVDTPGFGDAVDNSNCW-QPVIDYIDSKFEDY-LNAESRVNRRQMPDNRVQCCLYF-IAPSGHGLKPLDIE 136 (274)
T ss_dssp C--CCEEEEEEECCCCSCCSCCTTTT-HHHHHHHHHHHHHH-HHHHHSSCCCSCCCCCCCEEEEE-ECSCCSSCCHHHHH
T ss_pred cCCeEEEEEEEECCCccccccchhhH-HHHHHHHHHHHHHH-HHhhcccccccccCCceeEEEEE-ecCCCCCCCHHHHH
Confidence 35677899999999999999999999 79999999988432 22223455568999999999999 88999999999999
Q ss_pred HHHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 611 CMKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 611 ~mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
+|+.|+..+++|||++|+|+++..++..+|+.|++.+.
T Consensus 137 ~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~ 174 (274)
T 3t5d_A 137 FMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ 174 (274)
T ss_dssp HHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988763
No 8
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.7e-16 Score=171.98 Aligned_cols=114 Identities=39% Similarity=0.369 Sum_probs=89.9
Q ss_pred ccccccccccCCCCCcccccccccccccccccccccCCCCCCC-CCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 533 TTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPP-ARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 533 ~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~-~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
+....||++||||||..+++..|| .+|.+||++|+..+.... ....+...++|+|||||+|| |.|++|+|+++|+++
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~-~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~f-I~d~~~~l~~~Diei 169 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSY-KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYF-IAPTGHSLKSLDLVT 169 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHS-HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEE-ECCCC---CHHHHHH
T ss_pred ccccccchhhhhhhhhccccchhh-hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEE-EeCCCCCCCHHHHHH
Confidence 444589999999999999988899 799999998774311111 11122247899999999999 889999999999999
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
|+.|+..+||||||+|+|+||++|+..||+.|++.|.
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775
No 9
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.56 E-value=6.1e-16 Score=159.60 Aligned_cols=115 Identities=29% Similarity=0.357 Sum_probs=93.2
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
.+....||++|+||||..+++..+| ..+..|+..++........+.....++.+.|+|||||| +.|++|+|.++|+++
T Consensus 56 ~~~~~~ltv~d~~~~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lll-ldep~~gL~~lD~~~ 133 (270)
T 3sop_A 56 GGVKMKLTVIDTPGFGDQINNENCW-EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYF-ISPTGHSLRPLDLEF 133 (270)
T ss_dssp ---CCEEEEECCCC--CCSBCTTCS-HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEE-ECCCSSSCCHHHHHH
T ss_pred CCCcCCceEEechhhhhhcccHHHH-HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEE-EecCCCcCCHHHHHH
Confidence 3566789999999999999999899 68899998766332111222233358899999999999 667789999999999
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
|++|+..+||||||+|+|+||.+|++.+|+.|++.|.
T Consensus 134 l~~L~~~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELE 170 (270)
T ss_dssp HHHHHTTSEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775
No 10
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.9e-15 Score=161.92 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=82.4
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
.+..+.|+||||||+|+.+++..+| ..+..||++||..+ +..+..+.+..+.|+|||||+|+ |.|+++++.++|+++
T Consensus 91 ~~~~~~l~i~DTpG~gd~~~~~e~~-~~i~~~i~~~~~~y-l~~~~~~~r~~~~d~rv~~~vy~-I~~~~~~l~~~d~~~ 167 (361)
T 2qag_A 91 RGVKLRLTVVDTPGYGDAINCRDCF-KTIISYIDEQFERY-LHDESGLNRRHIIDNRVHCCFYF-ISPFGHGLKPLDVAF 167 (361)
T ss_dssp -CEEEEEEEEC---------------CCTHHHHHHHHHHH-HHHHTCSCCC-CCCCCCCEEEEE-ECSSSSSCCHHHHHH
T ss_pred CCcccceEEEEeccccccCccHHHH-HHHHHHHHHHHHHH-HHHhhhhccccccCCceEEEEEE-EecCCCCcchhHHHH
Confidence 4567899999999999999998899 69999998877322 12222344458999999999999 889999999999999
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
|+.|+..+|+|||++|+|+++..++..+|..|++.+.
T Consensus 168 ~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~ 204 (361)
T 2qag_A 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 204 (361)
T ss_dssp HHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765
No 11
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=158.39 Aligned_cols=114 Identities=30% Similarity=0.391 Sum_probs=84.5
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
.+..+.||||||||||..+++..+| ..+.+||++++..+ +..+....+..+.|.|+|||||| |.||+|+|.++|+.+
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~-~~i~~~i~~~~~~~-l~qr~~IaRal~~d~~~~vlL~l-dePt~~~L~~~d~~~ 160 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCW-QPVIDYIDSKFEDY-LNAESRVNRRQMPDNRVQCCLYF-IAPSGHGLKPLDIEF 160 (418)
T ss_dssp ---CEEEEEEECC-----------C-HHHHHHHHHHHHHH-TTTSCC-CCCCCCCC-CCEEEEE-CCC-CCSCCHHHHHH
T ss_pred CCcccceeeeechhhhhhccchhhH-HHHHHHHHHHHHHH-HHHHHHHHHHhccCCCeeEEEEE-ecCcccCCCHHHHHH
Confidence 3556789999999999998888899 68999999877432 22233455568899999999999 999999999999999
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
|+.|+..+|||||++|+|++++.++..||+.|++.+.
T Consensus 161 lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~ 197 (418)
T 2qag_C 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ 197 (418)
T ss_dssp HHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988753
No 12
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.32 E-value=2.3e-12 Score=131.57 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=93.8
Q ss_pred ccCccCCCCCCcccccc-------cccCCCCc-eee---cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEe
Q psy8479 84 SRCWVNTRTPPPNFLEK-------SWNFIPGK-AYK---PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYEL 152 (650)
Q Consensus 84 ~~~~vG~~~lp~Q~~rk-------~~~~k~g~-~Fn---VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l 152 (650)
..+++|+.++|.|..++ ..+ ++. .|+ +|.+|+|||||||+|++..+... +..++.|.... .+.+
T Consensus 8 ~~~~~g~~~l~~~~~~~l~~~~~~~~~--~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~--~~~~ 82 (270)
T 1h65_A 8 VREWSGINTFAPATQTKLLELLGNLKQ--EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPV--MVSR 82 (270)
T ss_dssp CEECGGGGGSCHHHHHHHHHHHHHHHH--TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCE--EEEE
T ss_pred hhhhcchhhccHHHHHHHHHHHHHHhh--cCCCCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeE--EEEE
Confidence 46799999999995544 333 232 445 99999999999999999875432 22222221111 1222
Q ss_pred eCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC-
Q psy8479 153 QENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK- 225 (650)
Q Consensus 153 ~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~- 225 (650)
...++.+. + .....+ ..++...+ .+ .+.+.++|+|||++..+.+++...+..+++.|...
T Consensus 83 ~~~~~~l~iiDTpG~~~~~~~----~~~~~~~i------~~---~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~ 149 (270)
T 1h65_A 83 SRAGFTLNIIDTPGLIEGGYI----NDMALNII------KS---FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSF 149 (270)
T ss_dssp EETTEEEEEEECCCSEETTEE----CHHHHHHH------HH---HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred eeCCeEEEEEECCCCCCCccc----hHHHHHHH------HH---HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 22333222 0 000000 00111111 11 12356899999999888788999999999988642
Q ss_pred -----CCeeeeeecccCCCHH--HHHHHHHHHHHHHHH
Q psy8479 226 -----VNIIPIIAKADTISKS--ELQKFKTNIMTELTS 256 (650)
Q Consensus 226 -----vnvIPVItKAD~Lt~~--El~~~K~~I~~~L~~ 256 (650)
+|+|+|+||+|...+. ++..+++.+...|..
T Consensus 150 ~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~ 187 (270)
T 1h65_A 150 GKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187 (270)
T ss_dssp CGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHH
T ss_pred CcccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHH
Confidence 5999999999988765 456666555555443
No 13
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.28 E-value=6e-13 Score=139.03 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=82.2
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
.+..+.||||||||||+.+++...| ..+..||..+++. +........+..+.+.|+|||||| +.|++++|.++++++
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~-~~l~~~l~~~~~~-~~~~~sgg~rqrv~~ara~~ll~l-dePt~~~Ld~~~~~~ 148 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCF-KTIISYIDEQFER-YLHDESGLNRRHIIDNRVHCCFYF-ISPFGHGLKPLDVAF 148 (301)
T ss_dssp --CCEEEEEEEEC-----------C-TTHHHHHHHHHHH-HHHHHTSSCCTTCCCCCCCEEEEE-ECSSSSSCCHHHHHH
T ss_pred CCcccCcchhhhhhhhhhcCcHHHH-HHHHHHHHHHHHH-HHHHhCHHhhhhhhhhhhhheeee-ecCcccCCCHHHHHH
Confidence 4567899999999999988776677 5777766654421 111122334457899999999999 999999999999999
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhcc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVLP 648 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l~ 648 (650)
|++++..+++++|++|+|+++..++..+|+.|++.+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~ 185 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIE 185 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999989988877643
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.05 E-value=1.1e-09 Score=106.73 Aligned_cols=145 Identities=16% Similarity=0.170 Sum_probs=93.0
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEE-eeCCceeec---c----hhHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYE-LQENNVKLK---E----DSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~-l~e~g~~L~---~----~~w~~Ii~yI~~qf~~y 178 (650)
-+.+ +|.+|+|||||||+|++.......+..++.|..+....+. ..+..+.|. + .........+......|
T Consensus 31 ~i~v-~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 31 EIAF-AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp EEEE-EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHH
T ss_pred EEEE-EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHH
Confidence 3455 9999999999999999987544445555555544322221 111122222 1 01111111112222344
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHH-
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTS- 256 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~- 256 (650)
+.. . ..+|+++|++..+ +++...+..++++|.. .+++|.|++|+|.+...++......+.+.+..
T Consensus 110 ~~~-----~-------~~~d~vi~v~d~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 110 LQT-----R-------PQLCGMILMMDAR-RPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHH-----C-------TTEEEEEEEEETT-SCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-----C-------cCcCEEEEEEeCC-CCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 433 1 1367889988865 5788999999999985 67999999999999999988888878777766
Q ss_pred ------CCCcEEeCC
Q psy8479 257 ------NGVHIYEFP 265 (650)
Q Consensus 257 ------~~I~if~f~ 265 (650)
.++.+|...
T Consensus 177 ~~~~~~~~~~~~~~S 191 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFS 191 (223)
T ss_dssp HHHTCCSCEEEEEEB
T ss_pred hhcccCCCCeEEEee
Confidence 456677665
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.96 E-value=4.2e-09 Score=100.13 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=82.1
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-----hhHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-----DSFKSIVDYIDNQFEAYL 179 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-----~~w~~Ii~yI~~qf~~yL 179 (650)
+.+ +|.+|+|||||||+|++..+....+..++.|..+.... + +..+.+. + ........ .......|+
T Consensus 26 i~v-~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~ 100 (195)
T 1svi_A 26 IAL-AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREA-WGRMIETYI 100 (195)
T ss_dssp EEE-EEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHH-HHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHH-HHHHHHHHH
Confidence 344 99999999999999999875555455555554443222 1 2222222 1 00000000 011112222
Q ss_pred HHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHH-C
Q psy8479 180 QEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTS-N 257 (650)
Q Consensus 180 ~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~-~ 257 (650)
.. -..+|+++|++..+ +++...++.+++++.. .++++.|++|+|.+...++......+++.+.. .
T Consensus 101 ~~------------~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 101 TT------------REELKAVVQIVDLR-HAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HH------------CTTEEEEEEEEETT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred hh------------hhcCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence 21 02468899998865 5688888888899874 67999999999999988887777777776764 4
Q ss_pred CCcEEeCCC
Q psy8479 258 GVHIYEFPT 266 (650)
Q Consensus 258 ~I~if~f~~ 266 (650)
++.+|....
T Consensus 168 ~~~~~~~Sa 176 (195)
T 1svi_A 168 EDELILFSS 176 (195)
T ss_dssp TSEEEECCT
T ss_pred CCceEEEEc
Confidence 677877753
No 16
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.90 E-value=1.2e-08 Score=96.40 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=88.8
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEE-----EeeCCceeec------chhHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTY-----ELQENNVKLK------EDSFKSIVDYIDNQFE 176 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~-----~l~e~g~~L~------~~~w~~Ii~yI~~qf~ 176 (650)
+.+ +|.+|+|||||||.|++.. ....+..++.|..+..... .++-.|+... ...|..+. .
T Consensus 26 i~v-~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-------~ 96 (195)
T 3pqc_A 26 VAF-VGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV-------E 96 (195)
T ss_dssp EEE-EEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHH-------H
T ss_pred EEE-ECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHH-------H
Confidence 445 9999999999999999987 3333344444443322111 1222222111 11122222 2
Q ss_pred HHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 177 AYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 177 ~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
.|+.. -..+++++|++..+ .+....+..+++++.. .++++.|++|+|.+...++......+++.+.
T Consensus 97 ~~~~~------------~~~~~~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 97 DYFKN------------RWSLQMVFLLVDGR-IPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHH------------CTTEEEEEEEEETT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred HHHhc------------CcCceEEEEEecCC-CCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence 22221 03468888888764 5778888888888885 6799999999999998888888888887777
Q ss_pred H-CCCcEEeCCC
Q psy8479 256 S-NGVHIYEFPT 266 (650)
Q Consensus 256 ~-~~I~if~f~~ 266 (650)
. .++.+|....
T Consensus 164 ~~~~~~~~~~Sa 175 (195)
T 3pqc_A 164 KYGEYTIIPTSS 175 (195)
T ss_dssp SSCCSCEEECCT
T ss_pred hcCCCceEEEec
Confidence 6 4478887763
No 17
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.76 E-value=2e-08 Score=100.11 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=72.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHH--HHH-HHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFK--SIV-DYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~--~Ii-~yI~~qf~~yL~eE~~i~R 187 (650)
||.+|+|||||||+|++...........+.|.......+.+.+..+.|. ...+. ... .-+...+..++. +
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~------~ 108 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL------L 108 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH------H
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH------h
Confidence 9999999999999999987744321111122211111222222222222 11100 000 000011111111 1
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc------CCCeeeeeecccCCCHHHHHHHH----HHHHHHHHHC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS------KVNIIPIIAKADTISKSELQKFK----TNIMTELTSN 257 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~------~vnvIPVItKAD~Lt~~El~~~K----~~I~~~L~~~ 257 (650)
.-..+|++||+++.+ ++...+..+++++.. ..++|.|+||+|.+...++..+. ..+++.++..
T Consensus 109 -----~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 109 -----TSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp -----TTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred -----cCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 113578999999864 566778888877742 34899999999999877666433 2455566667
Q ss_pred CCcEEeCCC
Q psy8479 258 GVHIYEFPT 266 (650)
Q Consensus 258 ~I~if~f~~ 266 (650)
+..++.|..
T Consensus 182 ~~~~~~~~~ 190 (239)
T 3lxx_A 182 GDRYCALNN 190 (239)
T ss_dssp SSSEEECCT
T ss_pred CCEEEEEEC
Confidence 777777754
No 18
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.73 E-value=6.7e-08 Score=100.85 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEE---------EeeCCceeecchhHHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTY---------ELQENNVKLKEDSFKSIVDYIDNQFEAYL 179 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~---------~l~e~g~~L~~~~w~~Ii~yI~~qf~~yL 179 (650)
++ +|++|+|||||+|+|++.++... +..++.|.......+ .++..|+. ....|..+-.++......|+
T Consensus 14 ~i-vG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~-~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 14 AI-VGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY-EPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EE-ECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTTEEEEEEECCCCC-CCCTTCHHHHHHHHHHHHHH
T ss_pred EE-ECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEecCCCCeEEEEECcCCC-ccccchhHHHHHHHHHHHHh
Confidence 44 99999999999999999876532 222222221110011 11222211 01234444444444433333
Q ss_pred HHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHH-HHHhcc-CCCeeeeeecccCC-CHHHHHHHHHHHHHHHHH
Q psy8479 180 QEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVC-MKKLDS-KVNIIPIIAKADTI-SKSELQKFKTNIMTELTS 256 (650)
Q Consensus 180 ~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~-mk~L~~-~vnvIPVItKAD~L-t~~El~~~K~~I~~~L~~ 256 (650)
. .+|+++|++.++ ++....+..+ ++.|.. .+++|.|++|+|.+ ....+....+.+.+.+.
T Consensus 91 ~---------------~aD~il~VvD~~-~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~- 153 (308)
T 3iev_A 91 E---------------EADVILFMIDAT-EGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP- 153 (308)
T ss_dssp H---------------HCSEEEEEEETT-TBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-
T ss_pred h---------------cCCEEEEEEeCC-CCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-
Confidence 2 257899999875 5677778777 888875 67999999999998 66665555555544432
Q ss_pred CCCcEEeCCC-CchhHHHHHHHhh
Q psy8479 257 NGVHIYEFPT-DDETMSDVNAAMT 279 (650)
Q Consensus 257 ~~I~if~f~~-d~~~~~~~~~~~~ 279 (650)
....+|.... ......++...+.
T Consensus 154 ~~~~i~~vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 154 ELTEIVPISALKGANLDELVKTIL 177 (308)
T ss_dssp TCCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2256776653 2233444443333
No 19
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.70 E-value=7.4e-08 Score=100.52 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=66.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-------chhHHHHHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-------EDSFKSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-------~~~w~~Ii~yI~~qf~~yL~eE~~ 184 (650)
||++|+|||||+|+|++.++... +..++.|.... ...+..++..+. ...-..+-.++......|
T Consensus 13 vG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i--~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~------ 83 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRL--RGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA------ 83 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCE--EEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH------
T ss_pred ECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEE--EEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH------
Confidence 99999999999999999876432 22222221100 000111222222 011112222222221111
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc---CCCeeeeeecccCCCHHH
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS---KVNIIPIIAKADTISKSE 242 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~E 242 (650)
+ ..+|+++|++..+ +++...|..+++.|.. .+|+|+|++|+|.....+
T Consensus 84 -------l--~~ad~il~VvD~~-~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 84 -------L--ADVNAVVWVVDLR-HPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp -------T--SSCSEEEEEEETT-SCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred -------H--hcCCEEEEEEECC-CCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 1 1368999999976 4588888888888875 689999999999987655
No 20
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.69 E-value=3.4e-08 Score=100.29 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|.+|+|||||||+|++...... +..++.|.......+.+.+..+.|. ...+..+. +.|+.. +.+
T Consensus 42 vG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~-------~~~~~~---i~~ 110 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN-------HQALEL---IKG 110 (262)
T ss_dssp EECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC-------HHHHHH---HHH
T ss_pred ECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch-------HHHHHH---HHH
Confidence 99999999999999999875332 2222222222111222222122221 00111110 011110 111
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccC------CCeeeeeecccCC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSK------VNIIPIIAKADTI 238 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~------vnvIPVItKAD~L 238 (650)
. +...++|++||++..+..++...+..+++.|... .++|+|++|+|..
T Consensus 111 ~---l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 111 F---LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp H---TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred H---HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 1 2356899999998877777888888888888752 2899999999985
No 21
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.60 E-value=5.9e-08 Score=97.97 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=48.9
Q ss_pred ceeeEEEEEEcCCCCCCCcchHHHHHHhcc-------CCCeeeeeecccCCCHHHHHHHH-----HHHHHHHHHCCCcEE
Q psy8479 195 NRIHVCLYFICPTGHGLKSLDLVCMKKLDS-------KVNIIPIIAKADTISKSELQKFK-----TNIMTELTSNGVHIY 262 (650)
Q Consensus 195 ~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-------~vnvIPVItKAD~Lt~~El~~~K-----~~I~~~L~~~~I~if 262 (650)
..+|++||++..+ ++...|..++++|.. ..++|.|++|.|....+ +..+. ..++..++..+..++
T Consensus 104 ~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g~~~~ 180 (247)
T 3lxw_A 104 PGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECGGRVC 180 (247)
T ss_dssp TCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcCCeEE
Confidence 3578999999875 488888888888875 56899999999986432 22222 335666667777777
Q ss_pred eCCC
Q psy8479 263 EFPT 266 (650)
Q Consensus 263 ~f~~ 266 (650)
.|..
T Consensus 181 ~~~~ 184 (247)
T 3lxw_A 181 AFDN 184 (247)
T ss_dssp ECCT
T ss_pred EEeC
Confidence 7753
No 22
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.56 E-value=4.6e-07 Score=87.23 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-----------hhHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-----------DSFKSIVDY 170 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-----------~~w~~Ii~y 170 (650)
+|..+. +|.+|+|||||||.|++.......+..++.|..+. .+.+.+ ++.+. . ..|...+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~-- 99 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL-- 99 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHH--
Confidence 565555 99999999999999999764443344444444322 122222 33332 1 1233222
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHH
Q psy8479 171 IDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTN 249 (650)
Q Consensus 171 I~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~ 249 (650)
..|++. .+ ..+++++++..+ ++....+.++++++.. ..+++.|.+|+|.++..+.+.....
T Consensus 100 -----~~~~~~----~~--------~~~~~~~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~ 161 (210)
T 1pui_A 100 -----GEYLEK----RQ--------SLQGLVVLMDIR-HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 161 (210)
T ss_dssp -----HHHHHH----CT--------TEEEEEEEEETT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred -----HHHHHh----hh--------cccEEEEEEECC-CCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHH
Confidence 233322 11 235566666543 4566667677777763 5688999999999998776654555
Q ss_pred HHHHHHHCCC
Q psy8479 250 IMTELTSNGV 259 (650)
Q Consensus 250 I~~~L~~~~I 259 (650)
++..+...++
T Consensus 162 ~~~~~~~~~~ 171 (210)
T 1pui_A 162 VREAVLAFNG 171 (210)
T ss_dssp HHHHHGGGCS
T ss_pred HHHHHHhcCC
Confidence 6666665543
No 23
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=90.14 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=62.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+.. ...+.+.+..+.+. ...+..+. ..|+.
T Consensus 34 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~----- 99 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIVDGERTVLQLWDTAGQERFRSIA-------KSYFR----- 99 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEETTEEEEEEEEECTTCTTCHHHH-------HHHHH-----
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEECCEEEEEEEEECCCCcchhhhH-------HHHHh-----
Confidence 999999999999999987654432222222221 12233333333332 12233222 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHH---H-HHHHHHHHHHHC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQ---K-FKTNIMTELTSN 257 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~---~-~K~~I~~~L~~~ 257 (650)
..++++|++..+.. .+..+. +..++... ..+++|.|++|+|........ . ............
T Consensus 100 ----------~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 100 ----------KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ----------hCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 14678888876531 122221 22223222 367999999999986332110 0 111222333445
Q ss_pred CCcEEeCC
Q psy8479 258 GVHIYEFP 265 (650)
Q Consensus 258 ~I~if~f~ 265 (650)
++.+|...
T Consensus 170 ~~~~~~~S 177 (199)
T 2p5s_A 170 GALFCETS 177 (199)
T ss_dssp TCEEEECC
T ss_pred CCeEEEee
Confidence 77777765
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.44 E-value=5.1e-07 Score=83.71 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=69.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.+... ..+.+.+.++.+. ...+..+. ..|+.
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~----- 86 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFRAVT-------RSYYR----- 86 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEETTEEEEEEEEECTTGGGTCHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCChHhhhhH-------HHHhc-----
Confidence 9999999999999999887654333333322222 2233333333332 12222222 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchH-HH---HHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDL-VC---MKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI-~~---mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|+++|++..+.. ....++ .+ ++.+. ...+++.|++|+|.....+. ....+.+.+...++.
T Consensus 87 ----------~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 153 (179)
T 1z0f_A 87 ----------GAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGLL 153 (179)
T ss_dssp ----------TCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCE
T ss_pred ----------cCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCE
Confidence 24788999886532 111111 22 22222 46789999999998643221 122334445567888
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 154 ~~~~Sa 159 (179)
T 1z0f_A 154 FLEASA 159 (179)
T ss_dssp EEECCT
T ss_pred EEEEeC
Confidence 887753
No 25
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.43 E-value=1.4e-09 Score=116.82 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=83.8
Q ss_pred cCCCCCCcccccccccCCCCceeecCCCCCChhhHhhhhhCcC----CCCCCCCCCCCcEEEEEEEEEeeCCceeec---
Q psy8479 88 VNTRTPPPNFLEKSWNFIPGKAYKPCETGLGKSTLMDSLFNTS----FESTPSPHSLPSVKLKAHTYELQENNVKLK--- 160 (650)
Q Consensus 88 vG~~~lp~Q~~rk~~~~k~g~~FnVG~SGvGKSTlINtLf~~~----~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~--- 160 (650)
.|+..|-+.+.+.... +-+.+ ||.+|+|||||||+|++.. .....+..++.|..... +.+.. ++.+.
T Consensus 147 ~gi~~L~~~I~~~~~~--~~i~~-vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~-~~~liDtP 220 (369)
T 3ec1_A 147 IGMAKVMEAINRYREG--GDVYV-VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPLES-GATLYDTP 220 (369)
T ss_dssp BTHHHHHHHHHHHHTT--SCEEE-ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EECST-TCEEEECC
T ss_pred CCHHHHHHHHHhhccc--CcEEE-EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEeCC-CeEEEeCC
Confidence 3444444444332222 34556 9999999999999999971 12223445555655432 22222 23322
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCC----CCCCcchHHHHHHhc-cCCCeeeeeec
Q psy8479 161 ED-SFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTG----HGLKSLDLVCMKKLD-SKVNIIPIIAK 234 (650)
Q Consensus 161 ~~-~w~~Ii~yI~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~----h~Lk~lDI~~mk~L~-~~vnvIPVItK 234 (650)
+. ....+..++..++ +.. .+.+.++|+++|++.|.. .+|..+| .|. .++++++|++|
T Consensus 221 G~~~~~~~~~~l~~~~---------l~~---~~~~~~i~~~~~~l~~~~~~~~g~l~~l~-----~l~~~~~~~~~v~~k 283 (369)
T 3ec1_A 221 GIINHHQMAHFVDARD---------LKI---ITPKREIHPRVYQLNEGQTLFFGGLARLD-----YIKGGRRSFVCYMAN 283 (369)
T ss_dssp SCCCCSSGGGGSCTTT---------HHH---HSCSSCCCCEEEEECTTEEEEETTTEEEE-----EEESSSEEEEEEECT
T ss_pred CcCcHHHHHHHHhHHH---------HHH---HhcccccCceEEEEcCCceEEECCEEEEE-----EccCCCceEEEEecC
Confidence 10 0011111111111 111 246788999999999841 1444433 454 35799999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q psy8479 235 ADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 235 AD~Lt~~El~~~K~~I~~~L~ 255 (650)
+|++...++......+.+.+.
T Consensus 284 ~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 284 ELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp TSCEEEEEGGGHHHHHHHHBT
T ss_pred CcccccccHHHHHHHHHHhcC
Confidence 999999888888887776653
No 26
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.40 E-value=3.8e-09 Score=113.42 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=74.9
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCC-----CCCCCCCCcEEEEEEEEEeeCCceeec---ch-hHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFES-----TPSPHSLPSVKLKAHTYELQENNVKLK---ED-SFKSIVDYIDNQFEA 177 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~-----~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~-~w~~Ii~yI~~qf~~ 177 (650)
-+.+ ||.+|+|||||||+|++..... ..+..++.|.... .+.+.. ++.+. +. ....+..|+.
T Consensus 162 ~i~~-vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~-~~~liDtPG~~~~~~~~~~l~----- 232 (368)
T 3h2y_A 162 DVYV-VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDE-ESSLYDTPGIINHHQMAHYVG----- 232 (368)
T ss_dssp CEEE-EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSS-SCEEEECCCBCCTTSGGGGSC-----
T ss_pred eEEE-ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecC-CeEEEeCCCcCcHHHHHHHhh-----
Confidence 4556 9999999999999999974322 2344455555443 222322 23332 10 0011121111
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
.+ .+.. .+...++|+++|++.|... +-.-++..+..|. .++++++|++|+|++...++......+.+.+.
T Consensus 233 ---~~-~l~~---~~~~~~i~~~~~~l~~~~~-~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 233 ---KQ-SLKL---ITPTKEIKPMVFQLNEEQT-LFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp ---HH-HHHH---HSCSSCCCCEEEEECTTEE-EEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred ---HH-HHHH---hccccccCceEEEEcCCCE-EEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 11 1111 2456789999999998421 1111222244455 36799999999999999988888877776554
No 27
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.37 E-value=2.4e-07 Score=84.59 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=61.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-hhHHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-DSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
+.+ +|.+|+|||||||.|++..... ....++.|.......+.+.+..+.+. + .....+...+...+..|+
T Consensus 4 i~v-~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~---- 77 (161)
T 2dyk_A 4 VVI-VGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL---- 77 (161)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT----
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH----
Confidence 345 9999999999999999876432 12222222222222233322222222 1 110001111111111111
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISK 240 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~ 240 (650)
...|+++|++..+ .++...+..+++++.. ..+++.|++|+|....
T Consensus 78 -----------~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 78 -----------EDAEVVLFAVDGR-AELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp -----------TTCSEEEEEEESS-SCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred -----------HhCCEEEEEEECC-CcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 1357899999875 4577777777888774 7899999999998765
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.37 E-value=7.5e-07 Score=83.07 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=73.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+... ..+.+.+.++.+. ...+..+. ..|+
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 82 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERYHSLA-------PMYY------ 82 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEE--EEEEETTEEEEEEEEECCCSGGGGGGT-------HHHH------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEE--EEEEECCEEEEEEEEeCCCChhhhhhh-------HHHh------
Confidence 9999999999999999876654332333322222 2233333233322 12222221 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
...|+++|++..+...--.....++..+. ..++++.|++|+|.....+. ....+.+.+..+++.+
T Consensus 83 ---------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 151 (181)
T 2efe_B 83 ---------RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENGLFF 151 (181)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTCEE
T ss_pred ---------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcCCEE
Confidence 12468888888653211111123333333 26689999999998754321 1223344455678888
Q ss_pred EeCCC-CchhHHHHHHH
Q psy8479 262 YEFPT-DDETMSDVNAA 277 (650)
Q Consensus 262 f~f~~-d~~~~~~~~~~ 277 (650)
|.... ......++...
T Consensus 152 ~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 152 METSAKTATNVKEIFYE 168 (181)
T ss_dssp EECCSSSCTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 87763 22334444333
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.36 E-value=4.2e-07 Score=83.41 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=68.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+.....+..+. ......+.+.+.++.+. ...|..+. ..|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~------ 73 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGA--AFLTQRVTINEHTVKFEIWDTAGQERFASLA-------PXYY------ 73 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEECCCChhhhhhh-------hhhh------
Confidence 999999999999999987755433333332 22222334433333332 22333322 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHH-HHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQK-FKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~-~K~~I~~~L~~~~I 259 (650)
+ ..|+++|++..+.. .+..+. .++..+ ...++++.|++|+|.+...+... ......+.....++
T Consensus 74 -~--------~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 74 -R--------NAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL 143 (170)
T ss_dssp -T--------TCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC
T ss_pred -c--------cCcEEEEEEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC
Confidence 1 24688888886532 122211 122222 24678999999999875411111 11122223344577
Q ss_pred cEEeCCC
Q psy8479 260 HIYEFPT 266 (650)
Q Consensus 260 ~if~f~~ 266 (650)
.+|....
T Consensus 144 ~~~~~Sa 150 (170)
T 1ek0_A 144 LFFETSA 150 (170)
T ss_dssp EEEECCT
T ss_pred EEEEEeC
Confidence 8887763
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=5.3e-07 Score=86.02 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=68.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+... ..+.+.+.++.+. ...+..+. ..|+
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 93 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQERFHSLA-------PMYY------ 93 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSGGGGGGT-------HHHH------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCchhhHhhh-------HHhh------
Confidence 9999999999999999887554433344333222 2333333333333 12222222 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ..++++|++..+... +..+ ..++..+. ..++++.|++|+|.....+. ....+.+.+...++.
T Consensus 94 -~--------~~d~iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~ 161 (192)
T 2fg5_A 94 -R--------GSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIGAI 161 (192)
T ss_dssp -T--------TCSEEEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTTCE
T ss_pred -c--------cCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCE
Confidence 1 246888888765321 1111 22333332 36799999999998642211 112334444566788
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 162 ~~~~S 166 (192)
T 2fg5_A 162 VVETS 166 (192)
T ss_dssp EEECB
T ss_pred EEEEe
Confidence 88765
No 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.35 E-value=6.9e-07 Score=84.70 Aligned_cols=129 Identities=15% Similarity=0.266 Sum_probs=69.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHH-HHHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFK-SIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~-~Ii~yI~~qf~~yL~eE~~ 184 (650)
+|.+|+|||||||.|++..+........+.+ +....+.+.+..+.+. ...|. .+. ..|+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~~----- 91 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVDIDGERIKIQLWDTAGQERFRKSMV-------QHYY----- 91 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEEETTEEEEEEEEECCCSHHHHTTTH-------HHHH-----
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEEECCEEEEEEEEECCCchhhhhhhh-------HHHh-----
Confidence 9999999999999999876654333332222 2222334433333333 11121 111 1111
Q ss_pred hhhcccccCCceeeEEEEEEcCCCC----CCCcchHHHHHHh-ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGH----GLKSLDLVCMKKL-DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h----~Lk~lDI~~mk~L-~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
...|+++|++..+.. .+......+++.+ ....++|.|++|+|.....+.. ...+.......++
T Consensus 92 ----------~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~ 159 (189)
T 1z06_A 92 ----------RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFADTHSM 159 (189)
T ss_dssp ----------TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHTTC
T ss_pred ----------cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC--HHHHHHHHHHcCC
Confidence 135789999986531 2232223333444 3467999999999986432211 1122233345678
Q ss_pred cEEeCCC
Q psy8479 260 HIYEFPT 266 (650)
Q Consensus 260 ~if~f~~ 266 (650)
.+|....
T Consensus 160 ~~~~~Sa 166 (189)
T 1z06_A 160 PLFETSA 166 (189)
T ss_dssp CEEECCS
T ss_pred EEEEEeC
Confidence 8887753
No 32
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.35 E-value=7.7e-07 Score=84.45 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=71.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCC-CCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFES-TPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQ 180 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~-~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~ 180 (650)
+.+ +|.+|+|||||||.|++..+.. ....+.+ +....+ ...++.+. ...+..+.
T Consensus 20 i~v-~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~------------ 80 (199)
T 4bas_A 20 VVM-CGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETF--EKGRVAFTVFDMGGAKKFRGLW------------ 80 (199)
T ss_dssp EEE-ECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEE--EETTEEEEEEEECCSGGGGGGG------------
T ss_pred EEE-ECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEE--EeCCEEEEEEECCCCHhHHHHH------------
Confidence 344 9999999999999999987655 2222222 222222 23333333 11222211
Q ss_pred HHHhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhcc-----------CCCeeeeeecccCCCHHHHHHHHH
Q psy8479 181 EELKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLDS-----------KVNIIPIIAKADTISKSELQKFKT 248 (650)
Q Consensus 181 eE~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~~-----------~vnvIPVItKAD~Lt~~El~~~K~ 248 (650)
.. .+ ...|+++|++..+.. .+..++..+...+.. .+++|.|++|+|.........+.+
T Consensus 81 ------~~--~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 150 (199)
T 4bas_A 81 ------ET--YY--DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE 150 (199)
T ss_dssp ------GG--GC--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH
T ss_pred ------HH--HH--hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHH
Confidence 11 11 246789999987632 244554444445443 789999999999987633333333
Q ss_pred HHH-HHH-HHCCCcEEeCC
Q psy8479 249 NIM-TEL-TSNGVHIYEFP 265 (650)
Q Consensus 249 ~I~-~~L-~~~~I~if~f~ 265 (650)
.+. ..+ ...++.+|...
T Consensus 151 ~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 151 ILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp HHTHHHHHTTSCEEEEECB
T ss_pred HhcchhhccCCeeEEEEee
Confidence 322 112 45677777665
No 33
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.34 E-value=1.4e-06 Score=87.59 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=33.4
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc------CCCeeeeee-cccCCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS------KVNIIPIIA-KADTIS 239 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~------~vnvIPVIt-KAD~Lt 239 (650)
..|+++|++..+. +...+..++++|.. ..++|.|++ |+|...
T Consensus 105 ~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 105 GPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp CCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 4689999999863 78888877777764 468889999 999874
No 34
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.34 E-value=1.1e-06 Score=86.36 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=43.0
Q ss_pred eEEEEEEcCCCC-CCC-cchHHHHHHhcc---CCCeeeeeecccCCCHHHHHHHHH-HHHHHHHHCC--CcEEeCCC
Q psy8479 198 HVCLYFICPTGH-GLK-SLDLVCMKKLDS---KVNIIPIIAKADTISKSELQKFKT-NIMTELTSNG--VHIYEFPT 266 (650)
Q Consensus 198 H~cLYfI~ps~h-~Lk-~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~El~~~K~-~I~~~L~~~~--I~if~f~~ 266 (650)
++++|++..+.. .+. ..++.+++.+.. .+++|.|++|+|.+...++..... .+...+...+ +.+|.+..
T Consensus 110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 186 (228)
T 2qu8_A 110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFST 186 (228)
T ss_dssp EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCT
T ss_pred cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 689999887642 222 234567777765 679999999999987655433222 3333334455 77887753
No 35
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.33 E-value=1.6e-06 Score=97.82 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=47.5
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIM 251 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~ 251 (650)
++|+++|++.++..++...+..+++.|.. ..++++|++|+|.++..++......++
T Consensus 188 ~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 188 RVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp HCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 46899999998776788888999999985 469999999999999988877766664
No 36
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.33 E-value=1.1e-06 Score=80.08 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=67.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ......+.+.+..+.+. ...|..+. ..|+.
T Consensus 9 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~~~----- 73 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGTFIEKYDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQFASMR-------DLYIK----- 73 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEETTEEEEEEEEECCCTTCCHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHcCCCcccCCCCcc---eeEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHhc-----
Confidence 99999999999999998765443222221 11122333433333232 22333332 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC----CCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH----GLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h----~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|++++++..+.. .+......+++.+. ...+++.|++|+|.....+.. ...+.......++.
T Consensus 74 ----------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 141 (167)
T 1kao_A 74 ----------NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS--SSEGRALAEEWGCP 141 (167)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHHHHTSC
T ss_pred ----------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCC--HHHHHHHHHHhCCC
Confidence 12567777765431 12333334444444 467999999999986543221 11222233345777
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 142 ~~~~Sa 147 (167)
T 1kao_A 142 FMETSA 147 (167)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 877654
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.33 E-value=6.2e-07 Score=81.87 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=64.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+.+.+ . ...+.+.+..+.+. ...+..+. ..|+.
T Consensus 10 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~~~----- 74 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADS--Y-RKKVVLDGEEVQIDILDTAGQEDYAAIR-------DNYFR----- 74 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE--E-EEEEEETTEEEEEEEEECCC---CHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhCccCCCCCCCcceE--E-EEEEEECCEEEEEEEEECCCcchhHHHH-------HHHhh-----
Confidence 9999999999999999877543322222111 1 11233333333332 11222222 22221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch---HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD---LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD---I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..+++++++..+.. .+..+. ..+++... ...+++.|++|+|.....+. ....+...+...++.
T Consensus 75 ----------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 142 (168)
T 1u8z_A 75 ----------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNVN 142 (168)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTCE
T ss_pred ----------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcCCe
Confidence 13577777775421 111111 12222222 26799999999998653221 112233444556778
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 143 ~~~~S 147 (168)
T 1u8z_A 143 YVETS 147 (168)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 88775
No 38
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.32 E-value=2.9e-06 Score=88.33 Aligned_cols=141 Identities=14% Similarity=0.223 Sum_probs=77.4
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
.+ +|.+|+|||||+|.|++... ...+..++.|+.+....+.+.+ ++.+. ..+.. .|. +.|+.. +
T Consensus 7 ~l-vG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~---~~~----~~~~~~---~ 73 (307)
T 3r7w_A 7 LL-MGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD---VFM----ENYFTK---Q 73 (307)
T ss_dssp EE-ECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSH---HHH----HHHHTT---T
T ss_pred EE-ECCCCCCHHHHHHHHHhCCC-CccccCcCCccceEEEEEEeCC-ceEEEEEECCCcH---HHh----hhhhhh---H
Confidence 44 99999999999999998632 2223345556655544444432 44443 11111 111 111111 0
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHh---ccCCCeeeeeecccCCCHHHHH----HHHHHHHHHHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKL---DSKVNIIPIIAKADTISKSELQ----KFKTNIMTELT 255 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L---~~~vnvIPVItKAD~Lt~~El~----~~K~~I~~~L~ 255 (650)
.+. .+ ...++++|++..+.. .+..+. ...++.+ ...++++.|++|+|....++.. .....+.+...
T Consensus 74 ~~~--~~--~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~ 149 (307)
T 3r7w_A 74 KDH--IF--QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS 149 (307)
T ss_dssp HHH--HH--TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--Hh--ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH
Confidence 010 01 135789999987532 112221 1223333 2378999999999999866655 34455555556
Q ss_pred HCC---CcEEeCCC
Q psy8479 256 SNG---VHIYEFPT 266 (650)
Q Consensus 256 ~~~---I~if~f~~ 266 (650)
..+ +.+|....
T Consensus 150 ~~g~~~~~~~~tSa 163 (307)
T 3r7w_A 150 EFGFPNLIGFPTSI 163 (307)
T ss_dssp TTTCCSCEEEECCT
T ss_pred HcCCCCeEEEEeee
Confidence 665 67776653
No 39
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.31 E-value=1e-06 Score=81.14 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=69.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+... . +|..+....+.+. ++.+. ...+..+.
T Consensus 13 ~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~----------------- 68 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGEVVTT-I----PTIGFNVETVTYK--NLKFQVWDLGGLTSIRPYW----------------- 68 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCC-C----CCSSEEEEEEEET--TEEEEEEEECCCGGGGGGG-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCc-C----CcCccceEEEEEC--CEEEEEEECCCChhhhHHH-----------------
Confidence 99999999999999998765322 1 1222322333333 33332 11222211
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHH-HHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIM-TELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~-~~L~~~~I 259 (650)
+. .+ ...|+++|++..+.. .+...+..+...+. ...+++.|++|+|.....+...+.+.+. ..+...++
T Consensus 69 -~~--~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 69 -RC--YY--SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW 143 (171)
T ss_dssp -GG--GC--TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE
T ss_pred -HH--Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce
Confidence 11 11 246789999987542 35555555555544 3679999999999986533333333221 11223455
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 144 ~~~~~S 149 (171)
T 1upt_A 144 QIFKTS 149 (171)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 666665
No 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.29 E-value=1e-06 Score=82.28 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=67.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+. .+ ...+.+.+..+.+. ...+..+. ..|+.
T Consensus 24 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~----- 88 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDEFVEDYEPTKAD--SY-RKKVVLDGEEVQIDILDTAGQEDYAAIR-------DNYFR----- 88 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCTTCCE--EE-EEEEEETTEEEEEEEEECCCTTCCHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHhhCCCCCcCCCccce--EE-EEEEEECCEEEEEEEEECCCCcccHHHH-------HHHhc-----
Confidence 999999999999999987754332222111 11 11233333323332 22333332 22221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-C---CCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-G---LKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~---Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|++++++..+.. . +......+++... ..++++.|++|+|.....+. ....+++.+...++.
T Consensus 89 ----------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 156 (187)
T 2a9k_A 89 ----------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVN 156 (187)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCE
T ss_pred ----------cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCCe
Confidence 13577777775421 1 1111122233332 26799999999998643221 122344455667888
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 157 ~~~~Sa 162 (187)
T 2a9k_A 157 YVETSA 162 (187)
T ss_dssp EEECCT
T ss_pred EEEeCC
Confidence 887753
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.29 E-value=1.2e-06 Score=80.56 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=67.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+........+.+. ....+.+...++.+. ...+..+. ..|+
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~------ 76 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLERFRALA-------PMYY------ 76 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGGGGGT-------HHHH------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCeEEEEEEEcCCCchhhhccc-------HhhC------
Confidence 99999999999999999876544333333322 222333333333332 12222221 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
...|+++|++..+... +..+ ..++..|. ..++++.|++|+|.....+.. ...+.......++.
T Consensus 77 ---------~~~~~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~ 144 (170)
T 1z0j_A 77 ---------RGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM--ERDAKDYADSIHAI 144 (170)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC--HHHHHHHHHHTTCE
T ss_pred ---------cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccccC--HHHHHHHHHHcCCE
Confidence 1236888888765321 1111 22333333 345788888999987532211 11223333456778
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 145 ~~~~Sa 150 (170)
T 1z0j_A 145 FVETSA 150 (170)
T ss_dssp EEECBT
T ss_pred EEEEeC
Confidence 887653
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.28 E-value=8.6e-07 Score=81.61 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|++..+......+.+.+ +....+.+.+..+.+. ..... .|- .+.+.
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~----~~~~~ 74 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNIGGKRVNLAIWDTAGQE-----------RFH----ALGPI 74 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEESSSCEEEEEEEECCCC----------------------CC
T ss_pred ECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEECCEEEEEEEEECCCcH-----------hhh----hhHHH
Confidence 9999999999999999876554333333322 2222334443333333 11100 000 00111
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEe
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYE 263 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~ 263 (650)
.+ ...|+++|++..+.. .+..+. .+++.+ ...++++.|++|+|.....+.. ...+.+.....++.+|.
T Consensus 75 --~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 147 (170)
T 1z08_A 75 --YY--RDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAESYAESVGAKHYH 147 (170)
T ss_dssp --SS--TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred --Hh--ccCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCeEEE
Confidence 11 245788888876532 111111 222222 2467999999999986532211 12233344456777776
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 148 ~S 149 (170)
T 1z08_A 148 TS 149 (170)
T ss_dssp EB
T ss_pred ec
Confidence 64
No 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.26 E-value=1.6e-06 Score=80.26 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=67.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+..... +..+..+....+.+.+..+.+. ...+..+. ..|+.
T Consensus 20 ~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~----- 85 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PSYIR----- 85 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC--CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH-------HHHhc-----
Confidence 9999999999999999876543322 2223333333344443333332 12233222 11211
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|+++|++..+.. .+..+. .++..+ ...++++.|++|+|.....+.. ...+...+...++.
T Consensus 86 ----------~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 152 (179)
T 2y8e_A 86 ----------DSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAKELNVM 152 (179)
T ss_dssp ----------TCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC--HHHHHHHHHHHTCE
T ss_pred ----------CCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccCcCC--HHHHHHHHHHcCCe
Confidence 24688888886531 122221 222222 2467999999999986532211 11223334455778
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
++....
T Consensus 153 ~~~~Sa 158 (179)
T 2y8e_A 153 FIETSA 158 (179)
T ss_dssp EEEEBT
T ss_pred EEEEeC
Confidence 877653
No 44
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.3e-06 Score=80.15 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=63.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+.+.+.. ..+.+....+.+. ...+..+. ..|+.
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~----- 73 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFPAMQ-------RLSIS----- 73 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhHHHH-------HHhcc-----
Confidence 999999999999999987654332222221111 1122222222222 12233322 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~ 258 (650)
..|++++++..+... +..+ ..++..+. ...+++.|++|+|.....+... ..........+
T Consensus 74 ----------~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~--~~~~~~~~~~~ 140 (172)
T 2erx_A 74 ----------KGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS--SEAEALARTWK 140 (172)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH--HHHHHHHHHHT
T ss_pred ----------cCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH--HHHHHHHHHhC
Confidence 136788888765321 2222 22222232 3579999999999865432211 11122233446
Q ss_pred CcEEeCC
Q psy8479 259 VHIYEFP 265 (650)
Q Consensus 259 I~if~f~ 265 (650)
+.+|...
T Consensus 141 ~~~~~~S 147 (172)
T 2erx_A 141 CAFMETS 147 (172)
T ss_dssp CEEEECB
T ss_pred CeEEEec
Confidence 7777665
No 45
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.25 E-value=1.3e-06 Score=83.62 Aligned_cols=127 Identities=12% Similarity=0.176 Sum_probs=67.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ..+....+.+.+.++.+. ...+..+.
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 74 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT----------------- 74 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSCCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGGHHHH-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeEEEEEEEECCeEEEEEEEECCCchhhcchH-----------------
Confidence 99999999999999999876543222222 222222333333333333 12222221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+. .+ ...|+++|++..+.. .+..+ ..++..+. ...+++.|++|+|.....+.. ...+.......++.
T Consensus 75 -~~--~~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 75 -TA--YY--RGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS--SERGRQLADHLGFE 146 (203)
T ss_dssp -HT--TG--GGCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC--HHHHHHHHHHHTCE
T ss_pred -HH--hh--cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccccC--HHHHHHHHHHCCCe
Confidence 11 11 235788888886532 11111 12233332 367999999999986532211 11222233445778
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 147 ~~~~S 151 (203)
T 1zbd_A 147 FFEAS 151 (203)
T ss_dssp EEECB
T ss_pred EEEEE
Confidence 88765
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.25 E-value=1.9e-06 Score=78.90 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=71.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+. .+....+.+...++.+. ...+..+. ..|+
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~------ 76 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQFHEFQESTIGA--AFLTQTVCLDDTTVKFEIWDTAGQERYHSLA-------PMYY------ 76 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccce--EEEEEEEEECCEEEEEEEEeCCCcHHhhhhh-------HHhc------
Confidence 999999999999999987654432222222 22222333333333332 12222222 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
...|+++|++..+.. .+..++ .++..+. ..++++.|.+|+|.....+. ....+.+.....++.
T Consensus 77 ---------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 144 (170)
T 1r2q_A 77 ---------RGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSLL 144 (170)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCE
T ss_pred ---------cCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccccc--CHHHHHHHHHHcCCe
Confidence 124688888876532 122222 2222222 35678888899998643211 112233344557888
Q ss_pred EEeCCC-CchhHHHHHHH
Q psy8479 261 IYEFPT-DDETMSDVNAA 277 (650)
Q Consensus 261 if~f~~-d~~~~~~~~~~ 277 (650)
+|.... ......++...
T Consensus 145 ~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEECCTTTCTTHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHH
Confidence 887763 22334444333
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.24 E-value=5.1e-07 Score=85.62 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=66.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+... ..+.+.+.++.+. ...+..+.
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 88 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV--KTVYRHDKRIKLQIWDTAGQERYRTIT----------------- 88 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEE--EEEEETTEEEEEEEEECCSCCSSCCSG-----------------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEE--EEEEECCeEEEEEEEeCCCcHHHhhhH-----------------
Confidence 9999999999999999887654333333332222 2233333233332 11111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+. .+ ...++++|++..+.. .+..+ ..++..+. ...+++.|++|+|.....+.. ...+.+.....++.
T Consensus 89 -~~--~~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 160 (189)
T 2gf9_A 89 -TA--YY--RGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVVP--AEDGRRLADDLGFE 160 (189)
T ss_dssp -GG--GG--TTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHHTCE
T ss_pred -HH--hc--cCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccCCC--HHHHHHHHHHcCCe
Confidence 11 11 235788888886532 11111 12333333 367999999999986532211 11223333445777
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 161 ~~~~Sa 166 (189)
T 2gf9_A 161 FFEASA 166 (189)
T ss_dssp EEECBT
T ss_pred EEEEEC
Confidence 887653
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.24 E-value=6.7e-07 Score=82.03 Aligned_cols=127 Identities=13% Similarity=0.232 Sum_probs=65.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+.+... ....+.+.+..+.+. ...+..+. ..|+
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~------ 75 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF--LERQIQVNDEDVRLMLWDTAGQEEFDAIT-------KAYY------ 75 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSE--EEEEEEETTEEEEEEEECCTTGGGTTCCC-------HHHH------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceEEEE--EEEEEEECCEEEEEEEEcCCCcHhHHHHH-------HHHh------
Confidence 99999999999999998765433222222222 112233333223332 11121111 0111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
...|++++++..+... +..+. .++..+. ...+++.|++|+|.....+. ....+...+...++.+
T Consensus 76 ---------~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 143 (168)
T 1z2a_A 76 ---------RGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLKLRF 143 (168)
T ss_dssp ---------TTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTCEE
T ss_pred ---------cCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcCCeE
Confidence 1357888888765321 22221 1233332 47899999999998653221 0112233334457778
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 144 ~~~S 147 (168)
T 1z2a_A 144 YRTS 147 (168)
T ss_dssp EECB
T ss_pred EEEe
Confidence 7765
No 49
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.24 E-value=2.1e-07 Score=94.69 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---------c-----hhHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---------E-----DSFKSIVDYID 172 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---------~-----~~w~~Ii~yI~ 172 (650)
-+.+ +|.+|+|||||+|+|++... ..+..++.|+......+.+.+..+.+. . ..+..+.
T Consensus 3 kI~l-vG~~n~GKSTL~n~L~g~~~--~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~---- 75 (256)
T 3iby_A 3 HALL-IGNPNCGKTTLFNALTNANQ--RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA---- 75 (256)
T ss_dssp EEEE-EESTTSSHHHHHHHHHTTSE--EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH----
T ss_pred EEEE-ECCCCCCHHHHHHHHHCCCC--CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH----
Confidence 3566 99999999999999999753 233345556554444444333333332 1 1111121
Q ss_pred HHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 173 NQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 173 ~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
..|+.. .+.|+++|++..+. .+..+.+..+|.. ..|+|.|++|+|.....
T Consensus 76 ---~~~~~~-------------~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 76 ---AQSVID-------------LEYDCIINVIDACH---LERHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp ---HHHHHH-------------SCCSEEEEEEEGGG---HHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred ---HHHHhh-------------CCCCEEEEEeeCCC---chhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 122211 24689999998764 3445667777765 67999999999976443
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.23 E-value=1.4e-06 Score=80.87 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=63.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.....++.+ ..+....+.+.+..+.+. ...+..+.
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 73 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR----------------- 73 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCC----CCS--EEEEEEEEEETTEEEEEEEEECCCCGGGHHHH-----------------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEEEEEECCEEEEEEEEeCCCchhhhhhH-----------------
Confidence 99999999999999998765433222222 223223333433323332 12222221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh----c----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH-
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL----D----SKVNIIPIIAKADTISKSELQKFKTNIMTELT- 255 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L----~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~- 255 (650)
.. .+ ...|++++++..+.. .+..+. .++..+ . ..++++.|++|+|...... ....+.+.+.
T Consensus 74 -~~--~~--~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~ 144 (177)
T 1wms_A 74 -TP--FY--RGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISERQV---STEEAQAWCRD 144 (177)
T ss_dssp -GG--GG--TTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS---CHHHHHHHHHH
T ss_pred -HH--HH--hcCCEEEEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccccccc---CHHHHHHHHHh
Confidence 11 11 124677787765431 112111 122222 1 4569999999999862111 1112222333
Q ss_pred HCCCcEEeCCC
Q psy8479 256 SNGVHIYEFPT 266 (650)
Q Consensus 256 ~~~I~if~f~~ 266 (650)
..++.+|....
T Consensus 145 ~~~~~~~~~Sa 155 (177)
T 1wms_A 145 NGDYPYFETSA 155 (177)
T ss_dssp TTCCCEEECCT
T ss_pred cCCceEEEEeC
Confidence 45677887753
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=1.8e-06 Score=80.30 Aligned_cols=129 Identities=16% Similarity=0.293 Sum_probs=64.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+... ...+..+..+....+.+.+..+.+. ...|..+.
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----------------- 77 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT----------------- 77 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------------
T ss_pred ECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-----------------
Confidence 99999999999999998776432 1112222222222333333323332 11122111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+. .+ ...|+++|++..+.. .+..+. +..+..+. ..++++.|++|+|.....+.. ...+.......++.+
T Consensus 78 -~~--~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~ 150 (180)
T 2g6b_A 78 -HA--YY--RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK--REDGEKLAKEYGLPF 150 (180)
T ss_dssp --C--CG--GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC--HHHHHHHHHHHTCCE
T ss_pred -HH--Hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccC--HHHHHHHHHHcCCeE
Confidence 11 11 235789999886532 111111 22223322 467999999999987532111 111222233457778
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 151 ~~~S 154 (180)
T 2g6b_A 151 METS 154 (180)
T ss_dssp EECC
T ss_pred EEEe
Confidence 7765
No 52
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.22 E-value=1.3e-06 Score=79.28 Aligned_cols=125 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+........+. .+ ...+.+.+..+.+. ...|..+. ..|+.
T Consensus 9 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~~----- 73 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNHFVDECDPTIED--SY-RKQVVIDGETCLLDILDTAGQEEYSAMR-------DQYMR----- 73 (166)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCCE--EE-EEEEEETTEEEEEEEEECCCCSSCCHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCccce--EE-EEEEEECCEEEEEEEEECCCchhhhHHH-------HHhhc-----
Confidence 999999999999999987654332222211 11 11222332223222 22333333 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
..|++++++..+.. .+..+ ..++..+. ...+++.|++|+|....... ...+.+.....++
T Consensus 74 ----------~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 139 (166)
T 2ce2_X 74 ----------TGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAARTVE---SRQAQDLARSYGI 139 (166)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC---HHHHHHHHHHHTC
T ss_pred ----------cCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcccC---HHHHHHHHHHcCC
Confidence 13567777765421 11111 12222222 26799999999998763211 1122233344577
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 140 ~~~~~S 145 (166)
T 2ce2_X 140 PYIETS 145 (166)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 777765
No 53
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.22 E-value=2.2e-06 Score=88.39 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=35.4
Q ss_pred eeEEEEEEcCCCCCCCcch-HHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 197 IHVCLYFICPTGHGLKSLD-LVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lD-I~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
.|+++|++.++..++...+ ..+++++.. ..++|.|++|+|.+...
T Consensus 168 ~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 168 QNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp TTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred CCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 4688899887666676555 488888874 67999999999998654
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.22 E-value=1.4e-06 Score=82.06 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=38.4
Q ss_pred eeeEEEEEEcCCCCC-CCcchHHHHHHhcc--CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCC
Q psy8479 196 RIHVCLYFICPTGHG-LKSLDLVCMKKLDS--KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPT 266 (650)
Q Consensus 196 RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~~--~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~ 266 (650)
+.|+++|++..+... +..+. .++..+.. ..+++.|++|+| +...+ .....+.+.+...++.+|....
T Consensus 116 ~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~piilv~NK~D-~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 185 (208)
T 3clv_A 116 GATCAIVVFDISNSNTLDRAK-TWVNQLKISSNYIIILVANKID-KNKFQ--VDILEVQKYAQDNNLLFIQTSA 185 (208)
T ss_dssp TCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCCEEEEEEECTT-CC-CC--SCHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCCCcEEEEEECCC-ccccc--CCHHHHHHHHHHcCCcEEEEec
Confidence 346899999875321 22211 23333432 379999999999 53211 1223445555667888887653
No 55
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.22 E-value=7.9e-07 Score=84.35 Aligned_cols=128 Identities=11% Similarity=0.150 Sum_probs=66.6
Q ss_pred cCCCCCChhhHhhhhhCcCC-CCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSF-ESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~-~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~ 186 (650)
+|.+|+|||||||.|++... ..... +|..+....+.+.+..+.+. ...+..+.
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------------ 84 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQNIL----PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW------------------ 84 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSSCC----CCSSEEEEEEECSSCEEEEEEECCSTTTGGGG------------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCcC----CccceeEEEEEECCEEEEEEECCCCHHHHHHH------------------
Confidence 99999999999999998762 32222 22223333444443222222 12222221
Q ss_pred hcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHHH-HHHHHCC
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNIM-TELTSNG 258 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I~-~~L~~~~ 258 (650)
+. .+ ...|+++|++..+.. .+..+...+...+. ...++|.|++|+|..........++.+. ..+...+
T Consensus 85 ~~--~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 85 EH--YY--KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GG--GG--GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HH--HH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 11 11 235789999986532 23443333333332 3579999999999976422222222221 1112235
Q ss_pred CcEEeCC
Q psy8479 259 VHIYEFP 265 (650)
Q Consensus 259 I~if~f~ 265 (650)
+.+|...
T Consensus 161 ~~~~~~S 167 (190)
T 2h57_A 161 WHICASD 167 (190)
T ss_dssp EEEEECB
T ss_pred eEEEEcc
Confidence 5666654
No 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.19 E-value=3.5e-06 Score=78.95 Aligned_cols=128 Identities=13% Similarity=0.213 Sum_probs=66.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEE-EEEEEeeCC---------ceeec------chhHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLK-AHTYELQEN---------NVKLK------EDSFKSIVDYIDNQF 175 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~-~~~~~l~e~---------g~~L~------~~~w~~Ii~yI~~qf 175 (650)
+|.+|+|||||||.|++..+......+.+ ..+. ...+.+.+. .+.+. ...+..+.
T Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------- 87 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVG--IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT------- 87 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCS--EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH-------
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcccccc--eeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH-------
Confidence 99999999999999998765433222222 2222 122333322 22322 12232221
Q ss_pred HHHHHHHHhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHH
Q psy8479 176 EAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTN 249 (650)
Q Consensus 176 ~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~ 249 (650)
..| + ...|+++|++..+.. .+..+ ..++..+. ...+++.|++|+|.....+. ....
T Consensus 88 ~~~-------------~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~ 149 (195)
T 3bc1_A 88 TAF-------------F--RDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEE 149 (195)
T ss_dssp HHT-------------T--TTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHH
T ss_pred HHH-------------H--cCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccc--CHHH
Confidence 011 1 135789999886532 11111 23333333 46799999999998642211 1112
Q ss_pred HHHHHHHCCCcEEeCCC
Q psy8479 250 IMTELTSNGVHIYEFPT 266 (650)
Q Consensus 250 I~~~L~~~~I~if~f~~ 266 (650)
+.+.....++.+|....
T Consensus 150 ~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 150 ARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHHHHHHTCCEEECCT
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 23333445778887753
No 57
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.19 E-value=1.9e-06 Score=94.12 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=62.6
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHH----HHHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFK----SIVDYIDNQFEAYLQE 181 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~----~Ii~yI~~qf~~yL~e 181 (650)
-+.+ ||++|||||||+|.|++.... ..+..++-|.......+.+.+..+.|. ...+. .+...+..+...|+.+
T Consensus 5 ~V~i-vG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 5 VVAI-VGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp EEEE-ECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 3566 999999999999999997643 233445544433222222222222222 11221 1222223333333321
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCH
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISK 240 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~ 240 (650)
.|+++|++..+ .++...|..+.+.|.. ..++|.|++|+|....
T Consensus 83 ---------------ad~il~vvD~~-~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ---------------ADVIIFMVNGR-EGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp ---------------CSEEEEEEETT-TCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred ---------------CCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 36888888754 6788899988888874 6699999999998643
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.19 E-value=3.9e-06 Score=78.55 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=63.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+. .......+.+.+..+.+. ...|..+. ..|+..
T Consensus 10 ~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~---- 75 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNHFVDEYDPTI---EDSYRKQVVIDGETCLLDILDTAGQEEYSAMR-------DQYMRT---- 75 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCCCCCTTC---CEEEEEEEEETTEEEEEEEEECCCC---CTTH-------HHHHHH----
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCc---hheEEEEEEECCcEEEEEEEECCCcHHHHHHH-------HHHHhc----
Confidence 9999999999999999877544322221 111112233333333332 12233222 122211
Q ss_pred hhcccccCCceeeEEEEEEcCCCC----CCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH----GLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h----~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
.|++++++..+.. .+......+.+... ..++++.|++|+|.......... +.......++.
T Consensus 76 -----------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~---~~~~~~~~~~~ 141 (189)
T 4dsu_A 76 -----------GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQ---AQDLARSYGIP 141 (189)
T ss_dssp -----------CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHH---HHHHHHHHTCC
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHH---HHHHHHHcCCe
Confidence 3566777665431 11111122222222 36799999999998743222222 22223344678
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 142 ~~~~Sa 147 (189)
T 4dsu_A 142 FIETSA 147 (189)
T ss_dssp EEECCT
T ss_pred EEEEeC
Confidence 887753
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.18 E-value=1e-06 Score=80.99 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=62.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++.++.....++.+.+ +....+.+.+..+.+. ...|..+. ..|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~~------ 73 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGID--FKIKTVDINGKKVKLQIWDTAGQERFRTIT-------TAYY------ 73 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCCCC-------CC--EEEEEEESSSCEEEEEEECCTTGGGTSCCC-------HHHH------
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEeCCCChhhhhhH-------HHHh------
Confidence 9999999999999999876543322222222 2222334443333333 11121111 0111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
...|+++|++..+.. .+..+. .++..+. ...+++.|++|+|....... ...+.+.....++.
T Consensus 74 ---------~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 140 (170)
T 1g16_A 74 ---------RGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETRVVT---ADQGEALAKELGIP 140 (170)
T ss_dssp ---------TTEEEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTCCSC---HHHHHHHHHHHTCC
T ss_pred ---------ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCcCccC---HHHHHHHHHHcCCe
Confidence 135788998886532 121211 2222222 36799999999997421111 11122223345677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 141 ~~~~S 145 (170)
T 1g16_A 141 FIESS 145 (170)
T ss_dssp EEECB
T ss_pred EEEEE
Confidence 77765
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=82.21 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=65.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.+ . ...+.+.+..+.+. ...|..+. ..|+.
T Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~----- 84 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADS--Y-RKKVVLDGEEVQIDILDTAGQEDYAAIR-------DNYFR----- 84 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE--E-EEEEEETTEEEEEEEEECCCTTCCHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceE--E-EEEEEECCEEEEEEEEcCCChhhhHHHH-------HHHHh-----
Confidence 9999999999999999877543322222211 1 12233333333332 22333332 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch---HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD---LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD---I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..+++++++..+.. .+..+. ..+++... ..+++|.|++|+|.....+. ....+...+...++.
T Consensus 85 ----------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 152 (206)
T 2bov_A 85 ----------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVN 152 (206)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTCE
T ss_pred ----------hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccc--cHHHHHHHHHHhCCe
Confidence 13567777765421 111111 12222222 36799999999998653221 112233344556777
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 153 ~~~~S 157 (206)
T 2bov_A 153 YVETS 157 (206)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77665
No 61
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.17 E-value=1.7e-06 Score=81.51 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=58.5
Q ss_pred Cceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHH
Q psy8479 107 GKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 107 g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
.+.+. +|.+|+|||||||.|++.. .....+ |..+....+.+. ++.+. ...... |
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~----t~~~~~~~~~~~--~~~~~~~Dt~G~~~--------~------- 75 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISP----TLGFNIKTLEHR--GFKLNIWDVGGQKS--------L------- 75 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC----CSSEEEEEEEET--TEEEEEEEECCSHH--------H-------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccc----cCccceEEEEEC--CEEEEEEECCCCHh--------H-------
Confidence 33343 9999999999999999876 222222 222332333332 33332 111110 0
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
....+. .+ ...|+++|++..+.. .+..+...+...+. ..++++.|++|+|....
T Consensus 76 ~~~~~~--~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 76 RSYWRN--YF--ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HTTGGG--GC--TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHH--Hh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 011111 11 246789999986532 23333333333333 35799999999998764
No 62
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.6e-07 Score=84.80 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=38.1
Q ss_pred eeeEEEEEEcCC-CC-CCCcchHHHHHHh-------ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPT-GH-GLKSLDLVCMKKL-------DSKVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 196 RVH~cLYfI~ps-~h-~Lk~lDI~~mk~L-------~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
..|+++|++..+ .. .+..+...+...+ ...++++.|++|+|..........++.+.+.|.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence 468999999876 11 1222222222222 136899999999999877666677776665554
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.17 E-value=1.3e-06 Score=82.35 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=67.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ..+....+.+.+.++.+. ...+..+. ..|+
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 85 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTISVDGNKAKLAIWDTAGQERFRTLT-------PSYY------ 85 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-------HHHH------
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCccc--eEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-------HHHh------
Confidence 99999999999999998765543222222 223223344443333333 12222222 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
...|+++|++..+.. .+..+. .++..+. ..++++.|++|+|...... ....+.+.+...++
T Consensus 86 ---------~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~ 152 (195)
T 1x3s_A 86 ---------RGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENREV---DRNEGLKFARKHSM 152 (195)
T ss_dssp ---------TTCCEEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSCCS---CHHHHHHHHHHTTC
T ss_pred ---------ccCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCccccc---CHHHHHHHHHHcCC
Confidence 124788999886532 111221 2333333 2568999999999843210 11223334455678
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 153 ~~~~~S 158 (195)
T 1x3s_A 153 LFIEAS 158 (195)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 888765
No 64
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.17 E-value=2.1e-06 Score=93.73 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=75.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhH-------HHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSF-------KSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w-------~~Ii~yI~~qf~~yL~eE~ 183 (650)
||++|+|||||||+|++..... .+..++.|.......+.+.+..+.|. .... ..+-.|- .+....
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~------~~~~~~ 253 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS------VLRALK 253 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEE-EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHH------HHHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCcee-ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHH------HHHHHH
Confidence 9999999999999999876431 22233333333222333333333332 1110 0011110 010000
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHH--HHHHHHHHHHHHHH-CCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSE--LQKFKTNIMTELTS-NGV 259 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~E--l~~~K~~I~~~L~~-~~I 259 (650)
.+ .+.|+|++++..+ .+....|+.++..+. ...++|.|++|+|.+...+ ...+++.+.+.+.. .++
T Consensus 254 ~~---------~~ad~~llv~D~~-~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (436)
T 2hjg_A 254 AI---------DRSEVVAVVLDGE-EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 323 (436)
T ss_dssp HH---------HHCSEEEEEEETT-TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTS
T ss_pred HH---------HhCCEEEEEEcCC-cCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCC
Confidence 11 1246899999875 577788888887776 4679999999999986543 34455666666543 355
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.++...
T Consensus 324 ~~~~~S 329 (436)
T 2hjg_A 324 PILFMS 329 (436)
T ss_dssp CEEECC
T ss_pred CEEEEe
Confidence 666554
No 65
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.16 E-value=2.2e-06 Score=81.01 Aligned_cols=128 Identities=22% Similarity=0.312 Sum_probs=69.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+..... +..+..+....+.+.+..+.+. ...+..+. ..|+
T Consensus 22 ~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 86 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYY------ 86 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH-------HHHH------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHHH------
Confidence 9999999999999999876544322 2233334333444443333332 22333322 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHh-ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKL-DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L-~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
...|+++|++..+.. .+..+. +..+..+ ...+++|.|++|+|.....+... ..+.......++.+
T Consensus 87 ---------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 87 ---------RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADSLGIPF 155 (196)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTTCCE
T ss_pred ---------hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHHHHHHHHcCCcE
Confidence 124688888876531 111111 2222222 23679999999999875432211 12233445567888
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 156 ~~~S 159 (196)
T 3tkl_A 156 LETS 159 (196)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8765
No 66
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.16 E-value=4.3e-06 Score=80.98 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=65.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|.+|+|||||||.|++..+.... ....+|+... .....+.+. ...+..+. ..|+....
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~~---- 80 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKL-------SDYLKTRA---- 80 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETT-----GGGSSCEEEECCCCGGGTHHH-------HHHHHHHG----
T ss_pred ECCCCCCHHHHHHHHhcCCCCCee-eecCceEEEE-----eeCceEEEEECCCcHHHHHHH-------HHHHHhcc----
Confidence 999999999999999987643321 1111222110 011111111 12232222 33442211
Q ss_pred cccccCCceeeEEEEEEcCC-C-CCCCcchHHHHHHhc-------cCCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 188 SLNTYHDNRIHVCLYFICPT-G-HGLKSLDLVCMKKLD-------SKVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps-~-h~Lk~lDI~~mk~L~-------~~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
.+.|+++|++..+ . ..+......+...+. ..++++.|++|+|.....+....+..+.+.
T Consensus 81 -------~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~ 148 (218)
T 1nrj_B 81 -------KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESE 148 (218)
T ss_dssp -------GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred -------ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHH
Confidence 2468899999876 2 355555544444433 467999999999998765555544444433
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.16 E-value=7.5e-07 Score=82.70 Aligned_cols=127 Identities=19% Similarity=0.313 Sum_probs=65.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c---hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E---DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~---~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.... .+..+..+....+.+.+..+.+. . ..+..+.
T Consensus 15 ~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 75 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT----------------- 75 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH-----------------
Confidence 999999999999999987655322 22333334333444443333333 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
.. .+ ...|+++|++..+.. .+..+. .++..+. ..+++|.|++|+|........ ...........++.+
T Consensus 76 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~ 147 (181)
T 3tw8_B 76 -ST--YY--RGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVVE--TEDAYKFAGQMGIQL 147 (181)
T ss_dssp -GG--GG--TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGCCSC--HHHHHHHHHHHTCCE
T ss_pred -HH--Hh--ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhcccC--HHHHHHHHHHcCCeE
Confidence 00 11 235788888876531 111111 1233332 357999999999975432111 112233334456778
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 148 ~~~S 151 (181)
T 3tw8_B 148 FETS 151 (181)
T ss_dssp EECB
T ss_pred EEEE
Confidence 8765
No 68
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.16 E-value=1.6e-06 Score=80.43 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=64.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+.+. .+. ..+.+.+..+.+. ...|..+. ..|+.
T Consensus 15 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~--~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~----- 79 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSYFVSDYDPTIED--SYT-KICSVDGIPARLDILDTAGQEEFGAMR-------EQYMR----- 79 (181)
T ss_dssp EECTTSSHHHHHHHHHHSSCCSSCCTTCCE--EEE-EEEEETTEEEEEEEEECCCTTTTSCCH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCCcCc--eEE-EEEEECCEEEEEEEEECCCchhhHHHH-------HHHHh-----
Confidence 999999999999999987554322222111 111 1223332223332 12232222 11221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch---HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD---LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD---I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|++++++..+.. .+..+. ..+++.+. ..++++.|++|+|.....++. ...+.......++.
T Consensus 80 ----------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~ 147 (181)
T 2fn4_A 80 ----------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP--RSEASAFGASHHVA 147 (181)
T ss_dssp ----------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCE
T ss_pred ----------hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC--HHHHHHHHHHcCCe
Confidence 13567777765431 222222 13333333 467999999999986532221 11222233456788
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 148 ~~~~S 152 (181)
T 2fn4_A 148 YFEAS 152 (181)
T ss_dssp EEECB
T ss_pred EEEec
Confidence 88765
No 69
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.16 E-value=1.5e-06 Score=95.02 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=61.8
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-ch-----hHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-ED-----SFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~-----~w~~Ii~yI~~qf~~yL~e 181 (650)
+.+ ||++|||||||+|.|++.... ..+..++-|.......+.+.+..+.|. .. .+..+...+..|...|+
T Consensus 4 v~i-vG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~-- 79 (439)
T 1mky_A 4 VLI-VGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI-- 79 (439)
T ss_dssp EEE-ECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--
Confidence 456 999999999999999997642 223334433322222222322222222 11 11222222233333333
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI 238 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L 238 (650)
+ ..|++|+++..+ .++...|..+.++|.. ..++|.|++|+|..
T Consensus 80 -----~--------~ad~il~V~D~~-~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 -----R--------EADLVLFVVDGK-RGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp -----T--------TCSEEEEEEETT-TCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred -----H--------hCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 1 146888888754 5788889888888874 67999999999975
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.15 E-value=9.6e-07 Score=84.85 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=64.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+........+.+ +....+.+.+..+.+. ...|..+. ..|+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~------ 90 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGID--FKIKTVDINGKKVKLQLWDTAGQERFRTIT-------TAYY------ 90 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSSSCCCSCC--EEEEEEEETTEEEEEEEECCTTGGGGTCCC-------HHHH------
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcccce--EEEEEEEECCEEEEEEEEeCCCcHHHHHHH-------HHHh------
Confidence 9999999999999999876544322222222 2222333333223332 11222111 0111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
...|+++|++..+.. .+..+. .++..+. ..+++|.|++|+|....... ...+.......++.
T Consensus 91 ---------~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 91 ---------RGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETRVVT---ADQGEALAKELGIP 157 (213)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSSCCSC---HHHHHHHHHHHTCC
T ss_pred ---------ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccC---HHHHHHHHHHcCCE
Confidence 135788888886532 122222 2333332 36799999999998422111 11122223344677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 158 ~~~~S 162 (213)
T 3cph_A 158 FIESS 162 (213)
T ss_dssp EEECB
T ss_pred EEEEe
Confidence 87765
No 71
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.15 E-value=7.6e-07 Score=91.28 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=80.5
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHH--HHHHHHH-HHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIV--DYIDNQF-EAYLQ 180 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii--~yI~~qf-~~yL~ 180 (650)
+.+ +|.+|+|||||+|+|++... ..+..++.|+......+.+.+..+.+. ...+..+. ..+++++ ..|+.
T Consensus 6 I~l-vG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 6 IGL-IGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp EEE-EECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 445 99999999999999999863 234445555555444444443333332 11111100 0000010 11221
Q ss_pred HHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 181 EELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 181 eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
....++++|++..+. .+..+.++.+|.. .+|+|.|++|+|......+......+.+. .++
T Consensus 83 -------------~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~---lg~ 143 (274)
T 3i8s_A 83 -------------SGDADLLINVVDASN---LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSAR---LGC 143 (274)
T ss_dssp -------------HTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHH---HTS
T ss_pred -------------hcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHh---cCC
Confidence 123578999998753 2344556666654 78999999999986443322222223322 367
Q ss_pred cEEeCCC-CchhHHHHHHHhh
Q psy8479 260 HIYEFPT-DDETMSDVNAAMT 279 (650)
Q Consensus 260 ~if~f~~-d~~~~~~~~~~~~ 279 (650)
.++.... ......++...+.
T Consensus 144 ~~i~~SA~~g~gi~el~~~i~ 164 (274)
T 3i8s_A 144 PVIPLVSTRGRGIEALKLAID 164 (274)
T ss_dssp CEEECCCGGGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 7887764 2333444444443
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.15 E-value=3.7e-06 Score=79.35 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||+|++..+..
T Consensus 27 vG~~~~GKSsli~~l~~~~~~~ 48 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNHFVD 48 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCS
T ss_pred ECcCCCCHHHHHHHHHcCCCcc
Confidence 9999999999999999876543
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.14 E-value=1.7e-06 Score=83.79 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=65.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEE--EEEEEeeCC----------ceeec-----c-hhHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLK--AHTYELQEN----------NVKLK-----E-DSFKSIVDYIDN 173 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~--~~~~~l~e~----------g~~L~-----~-~~w~~Ii~yI~~ 173 (650)
+|.+|+|||||||.|++..+... ..+|+.+. ...+.+... .+.+. . ..+..+.
T Consensus 31 vG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~----- 101 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT----- 101 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH-----
T ss_pred ECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH-----
Confidence 99999999999999998765321 12233222 223334433 23332 1 1111111
Q ss_pred HHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHH
Q psy8479 174 QFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFK 247 (650)
Q Consensus 174 qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K 247 (650)
..|+ ...|+++|++..+.. .+..+ ..++..+. ..+++|.|++|+|.....+.. .
T Consensus 102 --~~~~---------------~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~--~ 161 (217)
T 2f7s_A 102 --TAFF---------------RDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQREVN--E 161 (217)
T ss_dssp --HHHH---------------TTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC--H
T ss_pred --HHHh---------------cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccccC--H
Confidence 1111 124788999886531 11111 12344443 356899999999986432211 1
Q ss_pred HHHHHHHHHCCCcEEeCC
Q psy8479 248 TNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 248 ~~I~~~L~~~~I~if~f~ 265 (650)
..+.+.....++.+|...
T Consensus 162 ~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 162 RQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHHHHTTCCEEEEB
T ss_pred HHHHHHHHHCCCcEEEEE
Confidence 223334455678888765
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.14 E-value=1.7e-06 Score=94.97 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=61.9
Q ss_pred CCceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCc--eeec-chhHHH----HHHHHHHHHHHH
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENN--VKLK-EDSFKS----IVDYIDNQFEAY 178 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g--~~L~-~~~w~~----Ii~yI~~qf~~y 178 (650)
+-+.+ ||++|+|||||+|.|++..+. .....++-|..... ..+...+ +.|. ...|.. +...+..+...|
T Consensus 24 ~~V~l-vG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~--~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 24 PVVAI-VGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIY--SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp CEEEE-ECSSSSSHHHHHHHHEEEEEC------------CEE--EECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CEEEE-ECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEE--EEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 34566 999999999999999997643 23334444433221 2222222 2222 222211 121222222222
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCC
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTI 238 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~L 238 (650)
+. ..|++||++.. ..++...|..++++|.. ..++|.|++|+|..
T Consensus 100 ~~---------------~ad~il~VvD~-~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 100 MD---------------EADVIIFMVNG-REGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HH---------------HCSEEEEEEES-SSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred Hh---------------hCCEEEEEEeC-CCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 21 24688888874 46899999999999985 67999999999964
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.14 E-value=3.2e-06 Score=78.88 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=58.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.... ..+.+.+..+.+. ...+.. +
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~------------------~ 69 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGQEDYDR------------------L 69 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE---EEEEETTEEEEEEEECCCCSGGGTT------------------T
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE---EEEEECCEEEEEEEEECCCCHhHHH------------------H
Confidence 999999999999999987654432222222211 1233333333332 111111 1
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhcc---CCCeeeeeecccCCCHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLDS---KVNIIPIIAKADTISKS 241 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~ 241 (650)
.+. .+ ...|++++++..+. ..+..+...++..+.. .++++.|++|+|.....
T Consensus 70 ~~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 70 RPL--SY--PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp GGG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred HHH--hc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 111 11 24578888888653 1233333234444443 78999999999987654
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.13 E-value=2.1e-06 Score=81.84 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred cCCCCCChhhHhhhhhCc--CCCCCCCCCCCCcEEEEEEEEEeeCC--ceeec---chhHHHHHHHHHHHHHHHHHHHHh
Q psy8479 112 PCETGLGKSTLMDSLFNT--SFESTPSPHSLPSVKLKAHTYELQEN--NVKLK---EDSFKSIVDYIDNQFEAYLQEELK 184 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~--~~~~~~s~~~~~T~~I~~~~~~l~e~--g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~ 184 (650)
+|.+|+|||||||.|++. .+......+.+ ..+....+.+.+. .+.+. ..... .|..
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~------- 88 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSG--VEVVVAPVTIPDTTVSVELFLLDTAGSD--------LYKE------- 88 (208)
T ss_dssp C------------------------------------CEEEECTTSSEEEEEEEEETTTTH--------HHHH-------
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCCCCccc--eEEEEEEEEECCcccEEEEEEEECCCcH--------HHHH-------
Confidence 999999999999999987 43322111111 1122223344433 33333 11111 0100
Q ss_pred hhhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc-------cCCCeeeeeecccCCC-HHHHHHHHHHHHHHHH
Q psy8479 185 IKRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD-------SKVNIIPIIAKADTIS-KSELQKFKTNIMTELT 255 (650)
Q Consensus 185 i~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~-------~~vnvIPVItKAD~Lt-~~El~~~K~~I~~~L~ 255 (650)
+.+. .+ ...|+++|++..+... +..+ ..++..+. ..+++|.|++|+|... ..+. ....+.+.+.
T Consensus 89 ~~~~--~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~ 161 (208)
T 2yc2_C 89 QISQ--YW--NGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWAT 161 (208)
T ss_dssp HHST--TC--CCCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHH
T ss_pred HHHH--HH--hhCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHH
Confidence 1111 11 2457899999865321 1221 13333333 3679999999999876 2221 1123344445
Q ss_pred HCCCcEEeCC
Q psy8479 256 SNGVHIYEFP 265 (650)
Q Consensus 256 ~~~I~if~f~ 265 (650)
..++.+|...
T Consensus 162 ~~~~~~~~~S 171 (208)
T 2yc2_C 162 TNTLDFFDVS 171 (208)
T ss_dssp HTTCEEEECC
T ss_pred HcCCEEEEec
Confidence 5677887765
No 77
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.13 E-value=7.1e-06 Score=78.84 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=58.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+..... .+.+.+..+.+. + ..+..+.
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~i~Dt~G~~~~~~~~----------------- 90 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA---DIEVDGKQVELALWDTAGQEDYDRLR----------------- 90 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE---EEEETTEEEEEEEECCCCSGGGTTTG-----------------
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE---EEEECCEEEEEEEEECCCchhHHHHH-----------------
Confidence 9999999999999999876644322222222111 123333223332 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~E 242 (650)
+. .+ ...++++|++..+. ..+..++..+++.+. ..++++.|++|+|.+...+
T Consensus 91 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 91 -PL--SY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp -GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred -HH--hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 11 11 23578888887653 234444333444444 3789999999999987644
No 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.12 E-value=2.9e-06 Score=80.51 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=66.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ..+....+.+...++.+. ...|..+. ..|+
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 95 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT-------SAYY------ 95 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCCCCSS--EEEEEEEEEETTEEEEEEEEEESCCCTTCTTH-------HHHH------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCCchhhhhhh-------HHHh------
Confidence 99999999999999999765543222222 222222333333333332 12222222 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ..+++++++..+... +..+ ..++..+. ..++++.|++|+|.....+. ....+...+...++.
T Consensus 96 -~--------~~d~vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 96 -R--------GAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNGLL 163 (193)
T ss_dssp -T--------TCCEEEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCE
T ss_pred -c--------cCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcCCE
Confidence 1 246788888765311 1111 12333332 35689999999998653221 112233344557788
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 164 ~~~~S 168 (193)
T 2oil_A 164 FLETS 168 (193)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88765
No 79
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.11 E-value=4.5e-06 Score=78.24 Aligned_cols=129 Identities=21% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+..... +..+..+....+.+.+..+.+. ...|..+.
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 76 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKDDSN--HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT----------------- 76 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCC--CCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH-----------------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-----------------
Confidence 9999999999999999876543222 2222333333344433333333 22233221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHh-ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKL-DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L-~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+. .+ ...|+++|++..+.. .+..+. +..++.+ ...++++.|++|+|.....+.. ...+.......++.+
T Consensus 77 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 77 -RS--YY--RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT--FLEASRFAQENELMF 149 (186)
T ss_dssp -HT--TS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEE
T ss_pred -HH--HH--hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHHcCCEE
Confidence 11 11 235788888886532 111111 1222333 2467999999999986432211 122333445677888
Q ss_pred EeCCC
Q psy8479 262 YEFPT 266 (650)
Q Consensus 262 f~f~~ 266 (650)
|....
T Consensus 150 ~~~Sa 154 (186)
T 2bme_A 150 LETSA 154 (186)
T ss_dssp EECCT
T ss_pred EEecC
Confidence 87753
No 80
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.11 E-value=1.6e-06 Score=82.59 Aligned_cols=129 Identities=11% Similarity=0.136 Sum_probs=66.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+. .+. ..+.+.+..+.+. ...+..+.
T Consensus 29 vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~--~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 88 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFE--NFS-HVMKYKNEEFILHLWDTAGQEEYDRLR----------------- 88 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEE--EEE-EEEEETTEEEEEEEEEECCSGGGTTTG-----------------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCccCCeeee--eeE-EEEEECCEEEEEEEEECCCcHHHHHHh-----------------
Confidence 999999999999999998754332222211 111 1223333333332 11221111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh---ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc-
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL---DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH- 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L---~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~- 260 (650)
+. .+. ..|++++++..+.. .+..+...++..+ ...+++|.|++|+|.....+.......+.+.....++.
T Consensus 89 -~~--~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 89 -PL--SYA--DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp -GG--GCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred -Hh--hcc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 11 122 34788888876531 1222212233333 34679999999999875322222223334444455666
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 164 ~~~~S 168 (194)
T 3reg_A 164 YIEAS 168 (194)
T ss_dssp EEECB
T ss_pred EEEee
Confidence 77664
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.11 E-value=1.9e-06 Score=81.90 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=64.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+.. ...+.+.+..+.+. ...+..+. ..|+
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 91 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQESFRSIT-------RSYY------ 91 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC-----CCSSEE--EEEEEETTEEEEEEEECCTTGGGTSCCC-------HHHH------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE--EEEEEECCEEEEEEEEECCCchhhhhhH-------HHHh------
Confidence 999999999999999987654432222222222 22333333333332 11121111 0111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
...|+++|++..+.. .+..+ ..++..+. ..++++.|++|+|.....+.. ...+.......++.
T Consensus 92 ---------~~~d~ii~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~ 159 (191)
T 2a5j_A 92 ---------RGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK--REEGEAFAREHGLI 159 (191)
T ss_dssp ---------TTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHHTCE
T ss_pred ---------ccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccccC--HHHHHHHHHHcCCE
Confidence 125788888886532 11111 12233332 367999999999986422110 11222333445777
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 160 ~~~~S 164 (191)
T 2a5j_A 160 FMETS 164 (191)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87765
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=4.9e-06 Score=80.32 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQE 181 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~e 181 (650)
+.+ +|.+|+|||||||.|++..+......+.+.... ..+.+.+..+.+. + ..+..+
T Consensus 28 i~v-vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 89 (207)
T 2fv8_A 28 LVV-VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV---ADIEVDGKQVELALWDTAGQEDYDRL-------------- 89 (207)
T ss_dssp EEE-EECTTSSHHHHHHHHHHSSCC-------CCEEE---EEEEETTEEEEEEEEECTTCTTCTTT--------------
T ss_pred EEE-ECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE---EEEEECCEEEEEEEEECCCcHHHHHH--------------
Confidence 344 999999999999999987654332222222111 1223333223332 1 111111
Q ss_pred HHhhhhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHH
Q psy8479 182 ELKIKRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 182 E~~i~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~E 242 (650)
.+. .+ ...++++|++..+. ..+..++..++..+. ..+++|.|++|+|.....+
T Consensus 90 ----~~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 90 ----RPL--SY--PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp ----GGG--GC--TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred ----HHh--hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 111 11 23578888887653 234444444455554 3789999999999986544
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=4.3e-06 Score=79.23 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=63.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.....++.+.+. ...+.+...++.+. ...+..+. ..|+.
T Consensus 14 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~----- 78 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISCDKSVCTLQITDTTGSHQFPAMQ-------RLSIS----- 78 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEETTEEEEEEEEECCGGGSCHHHH-------HHHHH-----
T ss_pred ECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEECCEEEEEEEEeCCChHHhHHHH-------HHhhc-----
Confidence 99999999999999998765433222222111 11122222223332 12222222 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCC-CCCCcch--HHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTG-HGLKSLD--LVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lD--I~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
..|++++++..+. ..+..+. +..+..+. ..+++|.|++|+|........ ..+.......++
T Consensus 79 ----------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 145 (199)
T 2gf0_A 79 ----------KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDT---REAQAVAQEWKC 145 (199)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCH---HHHHHHHHHHTC
T ss_pred ----------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCH---HHHHHHHHHhCC
Confidence 1367788877653 1222222 22233332 357999999999986421111 112222334567
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 146 ~~~~~S 151 (199)
T 2gf0_A 146 AFMETS 151 (199)
T ss_dssp EEEECB
T ss_pred eEEEEe
Confidence 777765
No 84
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.10 E-value=6.6e-06 Score=75.21 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||+|++..+......+.+ ..+ ...+.+.+.++.+. ...+..+. ..|+..
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~~~~---- 74 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIE--DSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR-------DLYMKN---- 74 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSCCCCSE--EEE-EEEEESSSCEEEEEEEEECSSCSSTTHH-------HHHHHH----
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcc--ceE-EEEEEECCEEEEEEEEECCChHHHHHHH-------HHHhcc----
Confidence 99999999999999998755332211111 111 12233333333332 12233332 122211
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch---HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC-CC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD---LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSN-GV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD---I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~-~I 259 (650)
.+++++++..+.. .+..+. ..+++... ...+++.|++|+|.....+.. ...+....... ++
T Consensus 75 -----------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 141 (167)
T 1c1y_A 75 -----------GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG--KEQGQNLARQWCNC 141 (167)
T ss_dssp -----------CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHTTSC
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC--HHHHHHHHHHccCC
Confidence 3567777765431 122221 11222222 367999999999986432210 11222223333 66
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 142 ~~~~~S 147 (167)
T 1c1y_A 142 AFLESS 147 (167)
T ss_dssp EEEECB
T ss_pred cEEEec
Confidence 777665
No 85
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=1.3e-06 Score=83.16 Aligned_cols=127 Identities=15% Similarity=0.194 Sum_probs=66.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+... ..+.+.+.++.+. ...+..+. ..|+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 93 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV--KTVYRHEKRVKLQIWDTAGQERYRTIT-------TAYY------ 93 (191)
T ss_dssp EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE--EEEEETTTTEEEEEECHHHHHHCHHHH-------HHHH------
T ss_pred ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE--EEEEECCEEEEEEEEeCCChHHHHHHH-------HHHH------
Confidence 9999999999999999876554322222222222 2344455555444 11111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+ ..+++++++..+.. .+..+. .++..+. ..+++|.|++|+|.....+. ....+.......++.
T Consensus 94 -~--------~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 94 -R--------GAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLGFD 161 (191)
T ss_dssp -T--------TCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTCE
T ss_pred -c--------cCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCCe
Confidence 1 24678888876531 122222 2333333 36799999999997532111 111222233445777
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 162 ~~~~S 166 (191)
T 3dz8_A 162 FFEAS 166 (191)
T ss_dssp EEECB
T ss_pred EEEEE
Confidence 88765
No 86
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.09 E-value=6.2e-06 Score=77.63 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=54.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----chhHHHHHHHHHHHHHHHHHHHHhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----EDSFKSIVDYIDNQFEAYLQEELKIK 186 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~~~w~~Ii~yI~~qf~~yL~eE~~i~ 186 (650)
||.+|+|||||+|.|++..... .+..++.|.......+.+.+..+.+. ...+..+..+ .+...+.. +
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~~~~~~~~---~- 81 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERI---GIERAWQE---I- 81 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHH---HHHHHHHH---H-
T ss_pred ECCCCCCHHHHHHHHhCCCcce-eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHH---HHHHHHHH---H-
Confidence 9999999999999999875321 22223333222222233322112221 0001111110 00111100 0
Q ss_pred hcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc----cCCCeeeeeecccCC
Q psy8479 187 RSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD----SKVNIIPIIAKADTI 238 (650)
Q Consensus 187 R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~----~~vnvIPVItKAD~L 238 (650)
+ ..|++++++..+. +....+..++..+. ..+++|.|++|+|..
T Consensus 82 ~--------~ad~~i~v~D~~~-~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 82 E--------QADRVLFMVDGTT-TDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp H--------TCSEEEEEEETTT-CCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred H--------hCCEEEEEEECCC-CCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1 2468888887653 23333444444443 257999999999973
No 87
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.09 E-value=8.4e-06 Score=79.32 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=52.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ..+ ...+.+.+..+.+. ...|..+. ..|
T Consensus 40 vG~~~vGKSsli~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~------- 102 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGAFPESYTPTVF--ERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR-------PLF------- 102 (214)
T ss_dssp EECTTSSHHHHHHHHHC-------CCCCC--EEE-EEEEEETTEEEEEEEEEC---------------------------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCccc--eeE-EEEEEECCEEEEEEEEECCCchhhhHHH-------HHH-------
Confidence 99999999999999998765332111111 111 11233333333332 11111111 001
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh---ccCCCeeeeeecccCCCHHHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL---DSKVNIIPIIAKADTISKSEL 243 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L---~~~vnvIPVItKAD~Lt~~El 243 (650)
+ ...|++++++..+.. .+..+...+++.+ ...+++|.|++|+|.......
T Consensus 103 ------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 103 ------Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred ------h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 1 245788998886531 1222111233333 347899999999999876543
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.08 E-value=4.9e-06 Score=80.34 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=65.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec------chhHHH-HHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK------EDSFKS-IVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~------~~~w~~-Ii~yI~~qf~~yL~eE~ 183 (650)
+|.+|+|||||||.|++..+.... +..+..+ ..+.+.+. ++.+. ...+.. +. ..|
T Consensus 13 vG~~~~GKTsli~~l~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~----- 75 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSS--AIYKVNNNRGNSLTLIDLPGHESLRFQLL-------DRF----- 75 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCBC---CCCSCEE--EEEECSSTTCCEEEEEECCCCHHHHHHHH-------HHH-----
T ss_pred ECCCCCCHHHHHHHHhCCCccccc---CCcceee--EEEEecCCCccEEEEEECCCChhHHHHHH-------HHH-----
Confidence 999999999999999987643321 1111122 23444433 34333 112221 11 111
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHh----------ccCCCeeeeeecccCCCHHHHHHHHHHHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKL----------DSKVNIIPIIAKADTISKSELQKFKTNIMTE 253 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L----------~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~ 253 (650)
. ...|+++|++..+. +........+++ ...++++.|++|+|..........++.+.+.
T Consensus 76 --~--------~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 76 --K--------SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp --G--------GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred --H--------hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 1 13688999998653 222122222221 2357999999999998766666666666666
Q ss_pred HH
Q psy8479 254 LT 255 (650)
Q Consensus 254 L~ 255 (650)
+.
T Consensus 144 l~ 145 (214)
T 2fh5_B 144 LN 145 (214)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 89
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.08 E-value=9.8e-07 Score=89.78 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...++||||||+++.-.-. ..+...+.. .+.+.++|||||+ +.++++.+.+.+.++|+.
T Consensus 86 ~~~l~iiDTpG~~~~~~~~----~~~~~~i~~----------------~~~~~~~d~il~v-~~~d~~~~~~~~~~~~~~ 144 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYIN----DMALNIIKS----------------FLLDKTIDVLLYV-DRLDAYRVDNLDKLVAKA 144 (270)
T ss_dssp TEEEEEEECCCSEETTEEC----HHHHHHHHH----------------HTTTCEECEEEEE-EESSCCCCCHHHHHHHHH
T ss_pred CeEEEEEECCCCCCCccch----HHHHHHHHH----------------HhhcCCCCEEEEE-EeCCCCcCCHHHHHHHHH
Confidence 4679999999998742110 111112222 1234579999999 777787888899999988
Q ss_pred ccCc------ceEEeeeecCCCCCHH--HHHHHHHHHHhh
Q psy8479 615 LDSK------VNIIPIIAKADTISKS--ELQKFKVSKTRV 646 (650)
Q Consensus 615 l~~~------vnviPvIaKaD~lt~~--e~~~~K~~i~~~ 646 (650)
|... +++|+|+.|+|..+++ ++..+++.+...
T Consensus 145 l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~ 184 (270)
T 1h65_A 145 ITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEA 184 (270)
T ss_dssp HHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHH
Confidence 8644 6899999999988766 455555544443
No 90
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=5.6e-06 Score=78.53 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=57.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.... ..+.+.+..+.+. ...|..+.
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~D~~G~~~~~~~~----------------- 83 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA---VSVTVGGKQYLLGLYDTAGQEDYDRLR----------------- 83 (194)
T ss_dssp EECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE---EEEESSSCEEEEEEECCCCSSSSTTTG-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE---EEEEECCEEEEEEEEECCCCcchhHHH-----------------
Confidence 999999999999999987654332222222221 1233333333332 11222111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKS 241 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~ 241 (650)
+. .+ ...|++++++..+.. .+..+...++..+. ..++++.|++|+|.....
T Consensus 84 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 84 -PL--SY--PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp -GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred -HH--hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 11 11 135788888876532 13333222344443 378999999999998654
No 91
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.06 E-value=1.4e-05 Score=83.12 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=64.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
||++|+|||||+|+|++.++.. .+..++.|..... . .+..++..+. ...+.. . ....+.... .+.
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~-g-i~~~~~~~i~~iDTpG~~~--~-----~~~~l~~~~--~~~ 81 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIV-G-IHTEGAYQAIYVDTPGLHM--E-----EKRAINRLM--NKA 81 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEE-E-EEEETTEEEEEESSSSCCH--H-----HHHHHHHHH--TCC
T ss_pred ECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEE-E-EEEECCeeEEEEECcCCCc--c-----chhhHHHHH--HHH
Confidence 9999999999999999986532 1222222221000 0 1122222222 111110 0 001111111 111
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC-HHHH
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS-KSEL 243 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt-~~El 243 (650)
. ...=..+++++|++..+. +...+..+++.|.. ..|+|.|++|.|... ...+
T Consensus 82 ~-~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~ 135 (301)
T 1ega_A 82 A-SSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADL 135 (301)
T ss_dssp T-TSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHH
T ss_pred H-HHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHH
Confidence 0 011135688999888754 88888888888874 679999999999987 4443
No 92
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.05 E-value=7e-06 Score=76.17 Aligned_cols=104 Identities=13% Similarity=0.239 Sum_probs=60.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---c-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---E-DSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~-~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|.+|+|||||||.|++..+.......... .+....+.+.+..+.+. + ..+..+.
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------------- 72 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKVTEQEAGGITQ--HIGAYQVTVNDKKITFLDTPGHEAFTTMR------------------- 72 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCSSCSSCCSSST--TCCCCEEEETTEEEEESCCCSSSSSSCSC-------------------
T ss_pred ECCCCCCHHHHHHHHhCCccccCCCCceeE--eeeEEEEEeCCceEEEEECCCCHHHHHHH-------------------
Confidence 999999999999999997665432111111 11111122222122221 1 1111100
Q ss_pred cccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
...=...|+++|++..+ .+....+++.++.+. ..++++.|++|+|....
T Consensus 73 ---~~~~~~~d~~i~v~d~~-~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 ---ARGAQVTDIVILVVAAD-DGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp ---CSSCCCCCEEEEEEETT-CCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred ---HHHHhhCCEEEEEEECC-CCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 01113467888888754 455666777888876 47899999999999863
No 93
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.05 E-value=1.9e-05 Score=87.57 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=79.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCC----C-CCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES----T-PSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~----~-~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|..|+|||||+|+|++..... . ....++.|+.+....+.+.+..+.+. ..... .|...-.
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-----------~~~~~~~-- 91 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-----------DLIRAVV-- 91 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-----------HHHHHHH--
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-----------HHHHHHH--
Confidence 9999999999999999876211 1 12233445444333344432222332 11211 1211111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHC----CCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELTSN----GVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~----~I~ 260 (650)
+. + ...+++++++..+ .++.+...+.+..+.. .+++|+|++|+|....+.+...++.+.+.+... ++.
T Consensus 92 -~~---~--~~aD~~ilVvda~-~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 92 -SA---A--DIIDLALIVVDAK-EGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp -HH---T--TSCCEEEEEEETT-TCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred -HH---H--hhCCEEEEEEecC-CCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 11 1 1357899999865 5677777777776653 678899999999999877888888888888766 566
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 165 ii~vS 169 (482)
T 1wb1_A 165 IIPIS 169 (482)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 77665
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.04 E-value=3.8e-06 Score=81.40 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=37.4
Q ss_pred eeEEEEEEcCCCCCCCcchH----HHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDL----VCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI----~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.|+++|++..+.. ....++ ..+..+. ..++++.|++|+|.....+. ....+.......++.+|...
T Consensus 85 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 85 ASGAILFFDVTSR-ITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCCCEEEEEB
T ss_pred CCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCCcEEEEe
Confidence 5788998886532 111222 2222222 35799999999998754332 22334445556788888765
No 95
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.03 E-value=3.4e-06 Score=80.98 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=66.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+.+ +....+.+.+..+.+. + ..|..+.
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 74 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVD--FKIKTVELDGKTVKLQIWDTAGQERFRTIT----------------- 74 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCCTTCCCSSCCC--EEEEEEEETTEEEEEEEECCTTTTTTTCCC-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEeCCChHHHHHHH-----------------
Confidence 9999999999999999876544322222222 2222334433333332 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+. .+ ...|+++|++..+... +..+. .++..+. ...+++.|++|+|.....+.. ...+.......++.
T Consensus 75 -~~--~~--~~~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 146 (206)
T 2bcg_Y 75 -SS--YY--RGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFADANKMP 146 (206)
T ss_dssp -GG--GG--TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCC
T ss_pred -HH--hc--cCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCe
Confidence 11 11 2357889998865321 11111 1222232 457999999999987532211 11222333456788
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 147 ~~~~S 151 (206)
T 2bcg_Y 147 FLETS 151 (206)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 88775
No 96
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.02 E-value=1.1e-05 Score=74.71 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFEST 134 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~ 134 (650)
+|.+|+|||||||.|++..+...
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~ 36 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQQ 36 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTT
T ss_pred ECCCCCCHHHHHHHHHhCcCCcc
Confidence 99999999999999998765543
No 97
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.02 E-value=3.1e-06 Score=77.56 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=56.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
+|.+|+|||||||.|++..+... .+ |..+....+.+....+.+. ...|..+. ..|+
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~-------- 65 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGEIVTT-IP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLW-------RHYF-------- 65 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSCC-CC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHH-------HHHT--------
T ss_pred ECCCCCCHHHHHHHHHcCCcCcc-cC----cCceeEEEEEECCEEEEEEEcCCChhhHHHH-------HHHh--------
Confidence 99999999999999998765432 11 2222222233222222222 22333322 1111
Q ss_pred cccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
...|+++|++..+.. .+......+...+. ..++++.|++|+|....
T Consensus 66 -------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 66 -------QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp -------TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 135788998886532 23434333333333 26799999999998764
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.02 E-value=3e-05 Score=74.12 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=41.7
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHH----HHHHHH-----CCCcE
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNI----MTELTS-----NGVHI 261 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I----~~~L~~-----~~I~i 261 (650)
.|+++|++..+.. +......+.++|. ..++++.|.+|+|.+..++.....+.| .+.+.. .++.+
T Consensus 96 ~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 96 TGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp CSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 5788999987653 3333344444444 367999999999999876543333333 334443 45566
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 175 ~e~S 178 (196)
T 3llu_A 175 YLTS 178 (196)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6554
No 99
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.02 E-value=5.6e-06 Score=88.03 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=61.6
Q ss_pred CceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeC-Cceeec--------chhHHHHHHHHHHHHHH
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQE-NNVKLK--------EDSFKSIVDYIDNQFEA 177 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e-~g~~L~--------~~~w~~Ii~yI~~qf~~ 177 (650)
-+.| ||.+|+|||||||+|++.+... +..+..|+..+...+.+.+ ..+.|. ...|..+. ..
T Consensus 160 ~V~l-vG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~-------~~ 229 (342)
T 1lnz_A 160 DVGL-VGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLG-------HQ 229 (342)
T ss_dssp CEEE-ESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTH-------HH
T ss_pred eeee-eCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhH-------HH
Confidence 3556 9999999999999999875321 1112222222212233332 223332 11232232 22
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCC----CCCCcchHHHHHHhc------cCCCeeeeeecccCCCHHH
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTG----HGLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~----h~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~E 242 (650)
||.. + .|.++++|++..+. +.+..++ .+++.|. ...++|.|++|+|.+...+
T Consensus 230 fl~~---i---------~~~d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e 291 (342)
T 1lnz_A 230 FLRH---I---------ERTRVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAAE 291 (342)
T ss_dssp HHHH---H---------HHCCEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred HHHH---H---------HhccEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCHH
Confidence 3322 1 13568899998764 3333333 2344443 2569999999999987653
No 100
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.02 E-value=1.7e-05 Score=74.18 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=64.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........+ ..+ ...+.+.+..+.+. ...+..+. ..|+.
T Consensus 24 ~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~----- 88 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKIFVDDYDPTIE--DSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR-------EQYMR----- 88 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCC--EEE-EEEEEETTEEEEEEEEECCSCGGGCSSH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCcc--cee-EEEEEeCCcEEEEEEEECCCchhhHHHH-------HHHHh-----
Confidence 99999999999999998755443222221 111 12233333333332 12222222 12221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-C---CCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-G---LKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~---Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
..|++++++..+.. . +......+++... ..+++|.|++|+|.....+. ....+.+.....++.
T Consensus 89 ----------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 89 ----------TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYNIP 156 (183)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHTCC
T ss_pred ----------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhCCe
Confidence 14677888776531 1 2222222223232 46799999999997542111 111223333444677
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 157 ~~~~S 161 (183)
T 3kkq_A 157 YIETS 161 (183)
T ss_dssp EEEEB
T ss_pred EEEec
Confidence 77664
No 101
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.01 E-value=5.8e-06 Score=84.30 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.5
Q ss_pred EEE-EEEcCCCCCCCcchH-HHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 199 VCL-YFICPTGHGLKSLDL-VCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 199 ~cL-YfI~ps~h~Lk~lDI-~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
+++ |+++. ..++...++ .+++.+.. ..++|.|+||+|.+...
T Consensus 164 ~~il~v~d~-~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 164 CLILAVSPA-NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp EEEEEEEES-SSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred eEEEEEecC-CcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 444 55554 456777775 58888874 67999999999998653
No 102
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=2.4e-06 Score=80.76 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=55.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++.... ...++.+.+ ...+.+. ++.+. ...+..+. ..|+
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~----~~~~~~~--~~~~~i~Dt~G~~~~~~~~-------~~~~------ 81 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVV-HTSPTIGSN----VEEIVIN--NTRFLMWDIGGQESLRSSW-------NTYY------ 81 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCE-EEECCSCSS----CEEEEET--TEEEEEEECCC----CGGG-------HHHH------
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcCCCccc----eEEEEEC--CEEEEEEECCCCHhHHHHH-------HHHh------
Confidence 999999999999999986654 211222211 1122222 23222 11111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
...|+++|++..+.. .+..+...+...+. ...+++.|++|+|...
T Consensus 82 ---------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 82 ---------TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp ---------TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred ---------cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 125789999987643 35555444334433 3679999999999875
No 103
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.00 E-value=1.3e-05 Score=85.01 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.7
Q ss_pred eeEEEEEEcCCCCCC-CcchHHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 197 IHVCLYFICPTGHGL-KSLDLVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 197 VH~cLYfI~ps~h~L-k~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
.||+++++.++...+ ...++.+++.+.. ..++|.|+||+|.+...
T Consensus 173 ~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 173 PNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp SSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred CCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 467888887765444 3555888888875 56999999999998653
No 104
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.99 E-value=7.7e-06 Score=77.99 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=63.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+........ +..+....+.+.+..+.+. ...+..+. ..|+.
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~~----- 97 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEACKSTV--GVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT-------SAYYR----- 97 (192)
T ss_dssp ECSTTSSHHHHHHHHCC--------CCT--TEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH-------HHHHH-----
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCCCCcc--ceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH-------HHHhc-----
Confidence 9999999999999999876543322222 2333333444443333333 22333332 22221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcch--HHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH-CCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLD--LVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTS-NGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lD--I~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~-~~I~ 260 (650)
..++++|++..+.. .+..+. +..++.+. ...+++.|++|+|.....+.. ...+...... .++.
T Consensus 98 ----------~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~ 165 (192)
T 2il1_A 98 ----------SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQITGMR 165 (192)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTSTTCE
T ss_pred ----------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhcCCCe
Confidence 24688888876531 111111 23344433 367999999999986432211 1112222223 3667
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 166 ~~~~S 170 (192)
T 2il1_A 166 FCEAS 170 (192)
T ss_dssp EEECB
T ss_pred EEEEe
Confidence 77664
No 105
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.99 E-value=5.2e-06 Score=78.80 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=56.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+. ......+ ...++.+. ...+..+. ..|+
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~-------~~~~------ 88 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFNEDMIPTV----GFNMRKI--TKGNVTIKLWDIGGQPRFRSMW-------ERYC------ 88 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCC----SEEEEEE--EETTEEEEEEEECCSHHHHTTH-------HHHH------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCCCC----ceeEEEE--EeCCEEEEEEECCCCHhHHHHH-------HHHH------
Confidence 9999999999999999876553322222 2222222 22333333 11222211 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
...|+++|++..+.. .+..+...+...+. ..+++|.|++|+|....
T Consensus 89 ---------~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 89 ---------RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp ---------TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ---------ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 124688999886532 34444333333333 46799999999998754
No 106
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.99 E-value=3.1e-05 Score=72.52 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=61.7
Q ss_pred eeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEE---EEE-eeCCceeecchhHHHH-HHHHHHHHHHHHHHHH
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAH---TYE-LQENNVKLKEDSFKSI-VDYIDNQFEAYLQEEL 183 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~---~~~-l~e~g~~L~~~~w~~I-i~yI~~qf~~yL~eE~ 183 (650)
.+ +|.+|+|||||||.|++..+... ..++.|...... .+. ++-.|+.- ...|..- ...+......|+...
T Consensus 5 ~v-~G~~~~GKSsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~~~- 79 (190)
T 2cxx_A 5 IF-AGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKIIEIEWKNHKIIDMPGFGF-MMGLPKEVQERIKDEIVHFIEDN- 79 (190)
T ss_dssp EE-EEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCEEEEETTEEEEECCCBSC-CTTSCHHHHHHHHHHHHHHHHHH-
T ss_pred EE-ECCCCCCHHHHHHHHhCcCCccC--CCCCccceeEEEecCCEEEEECCCccc-cccCCHHHHHHHHHHHHHHHHhh-
Confidence 44 99999999999999999864432 222222211111 111 12222110 1112110 111111112233220
Q ss_pred hhhhcccccCCceeeEEEEEEcCCC----------CCCCcchHHHHHHhc-cCCCeeeeeecccCCCHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTG----------HGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKS 241 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~----------h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~ 241 (650)
=..+++|++++.++. .++...|+++++.+. ..++++.|++|+|.....
T Consensus 80 ----------~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 80 ----------AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp ----------GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred ----------hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 013567888887642 133445666777776 468999999999998754
No 107
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.99 E-value=1.4e-06 Score=82.09 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=56.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+ .....+.+-+. ..+.+. ++.+. ...+..+.
T Consensus 27 ~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~----~~~~~~--~~~~~i~Dt~G~~~~~~~~----------------- 82 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV----EEIVIN--NTRFLMWDIGGQESLRSSW----------------- 82 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSC-EEEECCSSSSC----EEEEET--TEEEEEEEESSSGGGTCGG-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCC-CccCCcCceee----EEEEEC--CEEEEEEECCCCHhHHHHH-----------------
Confidence 99999999999999999876 22222222111 122222 22222 11121111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
+. .+ ...|+++|++..+.. .+..+...+...+. ...+++.|++|+|...
T Consensus 83 -~~--~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 83 -NT--YY--TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp -GG--GG--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -HH--Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 11 11 235799999987643 34444433444443 4679999999999875
No 108
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=1.1e-05 Score=78.21 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=66.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+ .+..+....+.+.+..+.+. ...|..+.
T Consensus 32 vG~~~vGKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~----------------- 92 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGLFPPGQGAT--IGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT----------------- 92 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCCCC--CSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH-----------------
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH-----------------
Confidence 999999999999999987654322222 22233333344443333332 12222221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcc--hHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSL--DLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~l--DI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
+. .+ ...+++++++..+.. .+..+ .+..++.+. ..+++|.|++|+|.....+.. ...+.......++.+
T Consensus 93 -~~--~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 93 -QS--YY--RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS--QQRAEEFSEAQDMYY 165 (201)
T ss_dssp -GG--GS--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSC--HHHHHHHHHHHTCCE
T ss_pred -HH--HH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCEE
Confidence 11 11 135688888876532 11111 122223332 467899999999986432211 111222233457788
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 166 ~~~S 169 (201)
T 2ew1_A 166 LETS 169 (201)
T ss_dssp EECC
T ss_pred EEEe
Confidence 8775
No 109
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.98 E-value=6.7e-06 Score=75.92 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEELKIKRSLN 190 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~~i~R~~~ 190 (650)
+|.+|+|||||||.|++...... ...++.+... ..+.+.+..+.+. -+.|..- .+ .+ ..+ .+.
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~-~~---~~-~~~------~~~-- 73 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAE-KL---DK-SWS------QES-- 73 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC------CCCSSSSEEE--EEEEETTEEEEEEEECCC------------CHH------HHH--
T ss_pred ECCCCccHHHHHHHHhcCCCccc-cCccccceeE--EEEEECCEEEEEEEEecCCCC-cc---ch-hhh------HHh--
Confidence 99999999999999998765432 2233333322 2334443333333 1111110 00 00 011 111
Q ss_pred ccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeC
Q psy8479 191 TYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264 (650)
Q Consensus 191 ~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f 264 (650)
.+. ..|++++++..+. ..+..+. .++..|. ..+++|.|++|+|.....+... ..+.......++.+|..
T Consensus 74 ~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~ 148 (175)
T 2nzj_A 74 CLQ--GGSAYVIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCREVSV--EEGRACAVVFDCKFIET 148 (175)
T ss_dssp TTT--SCSEEEEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHHTSEEEEC
T ss_pred hcc--cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccccccCH--HHHHHHHHHcCCeEEEE
Confidence 111 2356777776542 1222222 2233332 2679999999999875322111 11222223456777776
Q ss_pred C
Q psy8479 265 P 265 (650)
Q Consensus 265 ~ 265 (650)
.
T Consensus 149 S 149 (175)
T 2nzj_A 149 S 149 (175)
T ss_dssp B
T ss_pred e
Confidence 5
No 110
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.98 E-value=7.1e-06 Score=78.34 Aligned_cols=127 Identities=16% Similarity=0.248 Sum_probs=65.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+ .+..+....+.+.+..+.+. + ..|..+.
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 74 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------------- 74 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSSCCCC--CSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCc--ccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-----------------
Confidence 999999999999999988755432222 22333333344444333333 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchH---HHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH-H
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDL---VCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELT-S 256 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI---~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~-~ 256 (650)
+. .+ ...|+++|++..+.. .+..++. .+..... ..++++.|++|+|....... ...+..... .
T Consensus 75 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~ 146 (207)
T 1vg8_A 75 -VA--FY--RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVA---TKRAQAWCYSK 146 (207)
T ss_dssp -CG--GG--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSC---HHHHHHHHHHT
T ss_pred -HH--HH--hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccC---HHHHHHHHHhc
Confidence 11 11 235788998876532 1222211 1222222 36799999999998732211 112222222 4
Q ss_pred CCCcEEeCC
Q psy8479 257 NGVHIYEFP 265 (650)
Q Consensus 257 ~~I~if~f~ 265 (650)
.++.+|...
T Consensus 147 ~~~~~~~~S 155 (207)
T 1vg8_A 147 NNIPYFETS 155 (207)
T ss_dssp TSCCEEECB
T ss_pred CCceEEEEe
Confidence 567777665
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.98 E-value=4.3e-06 Score=80.19 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ..+ ...+.+.+.++.+. ...|..+.
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 89 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVE--NTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP----------------- 89 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSCCCCCSE--EEE-EEEEC----CEEEEEEEECCCCTTCCCC-----------------
T ss_pred ECCCCcCHHHHHHHHHhCCCCCCCCCccc--eEE-EEEEEECCEEEEEEEEECCCccchHHHH-----------------
Confidence 99999999999999999876543222211 111 11222333333332 11111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
.. .+ ...+++++++..+.. .+..+. .+++.+. ..+++|.|++|+|.....+... ..........++
T Consensus 90 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~ 161 (201)
T 3oes_A 90 -YS--FI--IGVHGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA--VEGKKLAESWGA 161 (201)
T ss_dssp -GG--GT--TTCCEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCSCH--HHHHHHHHHHTC
T ss_pred -HH--HH--hcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccccccCH--HHHHHHHHHhCC
Confidence 11 11 125788888876531 112221 2333332 2569999999999764322111 112223344577
Q ss_pred cEEeCCC
Q psy8479 260 HIYEFPT 266 (650)
Q Consensus 260 ~if~f~~ 266 (650)
.+|....
T Consensus 162 ~~~~~Sa 168 (201)
T 3oes_A 162 TFMESSA 168 (201)
T ss_dssp EEEECCT
T ss_pred eEEEEeC
Confidence 8887764
No 112
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.98 E-value=8.2e-06 Score=90.48 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=60.1
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
.|+... ||.+|+|||||+|+|++.+.. ..+..++.|..+....+.+.+..+.|. .-.... +...+.. .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~--------~~~~ve~-~ 301 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE--------AGEEIEH-E 301 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc--------chhHHHH-H
Confidence 455444 999999999999999997532 233344445544434444433222222 111111 1111111 1
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCc----chHHHHHHhccCCCeeeeeecccCCCHHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKS----LDLVCMKKLDSKVNIIPIIAKADTISKSEL 243 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~----lDI~~mk~L~~~vnvIPVItKAD~Lt~~El 243 (650)
.+.+....+ ...|+++|++..+ ++... .+..+++.+. ..++|.|++|+|.....+.
T Consensus 302 gi~~~~~~~--~~aD~vl~VvD~s-~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 302 GIRRSRMKM--AEADLILYLLDLG-TERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp ------CCC--SSCSEEEEEEETT-TCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHH
T ss_pred HHHHHHhhc--ccCCEEEEEEECC-CCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccch
Confidence 122221112 3457899999876 34554 5677777776 6799999999999876654
No 113
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.97 E-value=5.6e-06 Score=75.96 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=57.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..... .+..++.+.. ..+.+.+..+.+. ...+..+. ..|+
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~------ 70 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDGP-EAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLP-------GHCM------ 70 (166)
T ss_dssp EESTTSSHHHHHHHHCCC-----------CEEE---EEEEETTEEEEEEEEECC--------------------------
T ss_pred ECCCCCCHHHHHHHHcCccccC-CCCccccceE---EEEEECCEEEEEEEEECCCCccchhhh-------hhhh------
Confidence 9999999999999999865432 2223333322 1233333333333 11111111 1111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
...+++++++..+.. .+..+.. ++..+. ..++++.|++|+|.....+.. ...........++
T Consensus 71 ---------~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 138 (166)
T 3q72_A 71 ---------AMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVS--VDEGRACAVVFDC 138 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSC--HHHHHHHHHHTTC
T ss_pred ---------hhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccC--HHHHHHHHHHhCC
Confidence 123567777765422 1222221 222222 357999999999987433221 1112233345677
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 139 ~~~~~S 144 (166)
T 3q72_A 139 KFIETS 144 (166)
T ss_dssp EEEECB
T ss_pred cEEEec
Confidence 777665
No 114
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.97 E-value=5.9e-06 Score=79.63 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=63.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+. .+....+.+.+..+.+. ...+..+. ..|+
T Consensus 35 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~------ 99 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGAFSERQGSTIGV--DFTMKTLEIQGKRVKLQIWDTAGQERFRTIT-------QSYY------ 99 (201)
T ss_dssp EECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHH-------HHHH------
T ss_pred ECcCCCCHHHHHHHHhhCCCCCCCCCCcce--EEEEEEEEECCEEEEEEEEECCCcHhHHHHH-------HHHH------
Confidence 999999999999999987654322222111 12222333333223332 12233222 1121
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC-
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV- 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I- 259 (650)
+ ..++++|++..+.. .+..+. .++..+. ..+++|.|++|+|.....+. ....+.+.+...++
T Consensus 100 -~--------~~d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 100 -R--------SANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELREV--SLAEAQSLAEHYDIL 167 (201)
T ss_dssp -T--------TCSEEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCS
T ss_pred -h--------hCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccccc--CHHHHHHHHHHcCCC
Confidence 1 24688888886531 122222 2333332 45799999999998642111 11223334455677
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 168 ~~~~~S 173 (201)
T 2hup_A 168 CAIETS 173 (201)
T ss_dssp EEEECB
T ss_pred EEEEEe
Confidence 777665
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.96 E-value=6.3e-06 Score=83.79 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHH-HHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQ-FEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~q-f~~yL~eE 182 (650)
+.+ +|.+|+|||||+|+|++.... .+..++.|+......+...+..+.|. .+.+.+.. .++. -..|+..
T Consensus 8 I~l-vG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~e~v~~~~~~~- 81 (258)
T 3a1s_A 8 VAL-AGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS--IDEKIARDYLLK- 81 (258)
T ss_dssp EEE-ECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS--HHHHHHHHHHHH-
T ss_pred EEE-ECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC--HHHHHHHHHHhh-
Confidence 344 999999999999999987643 23334555554433333222122222 11111100 0000 0122211
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
...|++++++..+. +. ..+.++..|. ..+|++.|++|+|......... .+.......++.+
T Consensus 82 ------------~~~d~ii~V~D~t~--~~-~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~---~~~~l~~~lg~~v 143 (258)
T 3a1s_A 82 ------------GDADLVILVADSVN--PE-QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKI---DRYELQKHLGIPV 143 (258)
T ss_dssp ------------SCCSEEEEEEETTS--CH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCB---CHHHHHHHHCSCE
T ss_pred ------------cCCCEEEEEeCCCc--hh-hHHHHHHHHHhcCCCEEEEEECcCCCCccchHH---HHHHHHHHcCCCE
Confidence 24689999998753 32 2334445554 4679999999999754322211 1122223346788
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
+...
T Consensus 144 i~~S 147 (258)
T 3a1s_A 144 VFTS 147 (258)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8765
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.96 E-value=2.2e-06 Score=81.10 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=31.3
Q ss_pred eeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 196 RIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 196 RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
..|+++|++..+.. .+......+.+.+. ...+++.|++|+|....
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 56899999987632 34544444444444 26799999999999865
No 117
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.95 E-value=9.6e-06 Score=88.53 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=71.4
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHH--HHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAY--LQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~y--L~eE~~i~R~ 188 (650)
||++|+|||||||.|++.... ..+..++.|.......+.+.+..+.+. ...+..-..+.....+.| +.....+
T Consensus 186 vG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--- 261 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--- 261 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH---
T ss_pred ECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH---
Confidence 999999999999999997532 122333333322222333333222222 111110000000000000 0000001
Q ss_pred ccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHH--HHHHHHHHHHHHHH-CCCcEEeC
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSE--LQKFKTNIMTELTS-NGVHIYEF 264 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~E--l~~~K~~I~~~L~~-~~I~if~f 264 (650)
...++|++++..+ .++...|..++..+. ...+++.|++|+|.+...+ +..+++.+.+.+.. .+..++..
T Consensus 262 ------~~ad~vllv~d~~-~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 262 ------EKADVVVIVLDAT-QGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp ------HHCSEEEEEEETT-TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred ------hhCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 1236788887765 466677777777776 4679999999999986543 44455555555543 34555544
Q ss_pred C
Q psy8479 265 P 265 (650)
Q Consensus 265 ~ 265 (650)
.
T Consensus 335 S 335 (439)
T 1mky_A 335 S 335 (439)
T ss_dssp B
T ss_pred E
Confidence 3
No 118
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.94 E-value=2.5e-06 Score=86.77 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=70.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---------chhHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---------EDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---------~~~w~~Ii~yI~~qf~~y 178 (650)
+.| +|.+|+|||||+|+|++... ..+..++.|+......+.+.+..+.+. ......++. ..|
T Consensus 6 i~l-vG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~------~~~ 76 (271)
T 3k53_A 6 VAL-VGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIA------RNF 76 (271)
T ss_dssp EEE-EECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHH------HHH
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHH------HHh
Confidence 445 99999999999999999754 233344455544433333322222222 222222211 122
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cC-CCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SK-VNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~-vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
+ ...+.++++|++..+. + ...+.++..+. .. .|++.|++|+|...........+.+.+.
T Consensus 77 ~-------------~~~~~d~vi~v~D~~~--~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~--- 137 (271)
T 3k53_A 77 I-------------LDGNADVIVDIVDSTC--L-MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKE--- 137 (271)
T ss_dssp H-------------HTTCCSEEEEEEEGGG--H-HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHH---
T ss_pred h-------------hccCCcEEEEEecCCc--c-hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHH---
Confidence 2 1235678999998753 2 22333344443 34 8999999999976443222222223332
Q ss_pred CCCcEEeCC
Q psy8479 257 NGVHIYEFP 265 (650)
Q Consensus 257 ~~I~if~f~ 265 (650)
.++.++...
T Consensus 138 lg~~~~~~S 146 (271)
T 3k53_A 138 LGVPVIPTN 146 (271)
T ss_dssp HSSCEEECB
T ss_pred cCCcEEEEE
Confidence 367777664
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.94 E-value=4.2e-06 Score=81.92 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.+ +....+.+.+..+.+. + ..|..+
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------------ 78 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE--FATRTLEIEGKRIKAQIWDTAGQERYRAI------------------ 78 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC------CCS--EEEEEEEETTEEEEEEEECCTTTTTTTCC------------------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEECCCccchhhh------------------
Confidence 9999999999999999876544322222222 2222333333223332 1 111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
.+. .+ ...|+++|++..+.. .+..+. .++..+. ..+++|.|++|+|.....+.. ...+.......++.
T Consensus 79 ~~~--~~--~~~d~vilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~ 151 (223)
T 3cpj_B 79 TSA--YY--RGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQENQLL 151 (223)
T ss_dssp CGG--GT--TTCCEEEEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHHHTTCE
T ss_pred HHH--Hh--ccCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCE
Confidence 111 11 235788888876531 111111 1222232 367999999999986432211 11223334456788
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
+|...
T Consensus 152 ~~~~S 156 (223)
T 3cpj_B 152 FTETS 156 (223)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 88765
No 120
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.93 E-value=8e-06 Score=75.13 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=59.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..........+ +.......+.+.+..+.+. ...+...+ . ..|+.
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---~---~~~~~----- 74 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQGDHAHEMEN--SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL---Q---DHCLQ----- 74 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHH-----
T ss_pred ECCCCCCHHHHHHHHHhccCcccccCCC--cCCeeeEEEEECCeEEEEEEEECCCccccchhh---h---hhhhc-----
Confidence 9999999999999999765433211111 1222222333443334333 11111111 0 01111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
..|++++++..+.. .+..++. ++..+. ..++++.|++|+|.....+. ....+.+.....++
T Consensus 75 ----------~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 75 ----------TGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC 141 (169)
T ss_dssp ----------HCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC
T ss_pred ----------cCCEEEEEEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcCC
Confidence 13677777775431 2222322 222222 26799999999997632221 11223333445677
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.++...
T Consensus 142 ~~~~~S 147 (169)
T 3q85_A 142 KHIETS 147 (169)
T ss_dssp EEEECB
T ss_pred cEEEec
Confidence 777665
No 121
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.93 E-value=7.7e-06 Score=76.40 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=64.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+.+. ...+.+.+..+.+. ...+..+.
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------------- 71 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEYSIFP----------------- 71 (181)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTTCCCC-----------------
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEECCEEEEEEEEeCCCchhhhHHH-----------------
Confidence 99999999999999997665443333222221 12223333223322 11111110
Q ss_pred hhcccccCCceeeEEEEEEcCCCC----CCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCc
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH----GLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVH 260 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h----~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~ 260 (650)
+. .+ ...|++++++..+.. .+......+++.+. ..++++.|++|+|.....+. ....+.......++.
T Consensus 72 -~~--~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 144 (181)
T 3t5g_A 72 -QT--YS--IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNAA 144 (181)
T ss_dssp -GG--GT--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTCE
T ss_pred -HH--HH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCCc
Confidence 11 11 125677887775431 11111123333433 36799999999997532211 112233344556778
Q ss_pred EEeCCC
Q psy8479 261 IYEFPT 266 (650)
Q Consensus 261 if~f~~ 266 (650)
+|....
T Consensus 145 ~~~~Sa 150 (181)
T 3t5g_A 145 FLESSA 150 (181)
T ss_dssp EEECCT
T ss_pred EEEEec
Confidence 887764
No 122
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.92 E-value=2e-05 Score=76.92 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=54.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+. .+ ...+.+.+..+.+. ...+..+.
T Consensus 33 vG~~~vGKSsL~~~l~~~~~~~~~~~t~~~--~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------------- 92 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDCYPETYVPTVFE--NY-TACLETEEQRVELSLWDTSGSPYYDNVR----------------- 92 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEE--EE-EEEEEC--CEEEEEEEEECCSGGGTTTG-----------------
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCeeee--eE-EEEEEECCEEEEEEEEECCCCHhHHHHH-----------------
Confidence 999999999999999987754332222211 11 11233444444433 11222111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh---ccCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL---DSKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L---~~~vnvIPVItKAD~Lt 239 (650)
+. .+. ..+++++++..+.. .+...-..++..+ ...+++|.|.+|+|...
T Consensus 93 -~~--~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 93 -PL--CYS--DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp -GG--GCT--TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred -HH--HcC--CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 11 122 25788888876532 1111111233333 34779999999999854
No 123
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.92 E-value=2.1e-05 Score=83.37 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCCCCcchHH-HHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLV-CMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~-~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
+++|++++ ....+...|.. +++.+.. ..++|.|+||+|.+...
T Consensus 169 ~iiL~v~~-a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 169 CLILAVSP-ANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp EEEEEEEE-TTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred eEEEEEec-CCCccchhHHHHHHHHhCcCCCceEEEeccccccCcc
Confidence 45555554 44678777764 8888874 67999999999998653
No 124
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.92 E-value=2.6e-05 Score=74.10 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 27 vG~~~vGKTsLi~~l~~~~~~~ 48 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKRFIS 48 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCS
T ss_pred ECCCCCcHHHHHHHHHhCCCCc
Confidence 9999999999999999877544
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.91 E-value=3.6e-06 Score=80.95 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=60.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|++..+........+. .+....+.+.+..+.+. ..... .|. .+.+.
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~-------~~~~~ 93 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQDSNHTIGV--EFGSRVVNVGGKTVKLQIWDTAGQE--------RFR-------SVTRS 93 (200)
T ss_dssp EESTTSSHHHHHHHHHC------------C--CEEEEEEEETTEEEEEEEECCTTHH--------HHS-------CCCHH
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCcccc--eeEEEEEEECCeeeEEEEEcCCCcH--------hHH-------HHHHH
Confidence 999999999999999987654332222221 12222333333223332 11100 000 00000
Q ss_pred ccccCCceeeEEEEEEcCCCCC-CCcchHHHHHHh----ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEe
Q psy8479 189 LNTYHDNRIHVCLYFICPTGHG-LKSLDLVCMKKL----DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYE 263 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h~-Lk~lDI~~mk~L----~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~ 263 (650)
.+ ...|+++|++..+... +..+ ..++..+ ...++++.|++|+|.....+.. ...+.......++.+|.
T Consensus 94 --~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 94 --YY--RGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPEREVT--FLEASRFAQENELMFLE 166 (200)
T ss_dssp --HH--TTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred --Hh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccccC--HHHHHHHHHHcCCEEEE
Confidence 01 1257888888865321 1111 1222223 2467999999999985432211 12233344557788877
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 167 ~S 168 (200)
T 2o52_A 167 TS 168 (200)
T ss_dssp EC
T ss_pred Ee
Confidence 65
No 126
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.90 E-value=2.4e-06 Score=80.02 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=48.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|++..+..... +..+..+....+.+.+..+.+. ..... .|. .+.+.
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~-------~~~~~ 76 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFR-------TITTA 76 (183)
T ss_dssp ECCCCC----------------CHH--HHHCEEEEEEEEEETTEEEEEEEEEC------------------------CCT
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCC--CcccceeEEEEEEECCEEEEEEEEcCCCCh--------hhh-------hhHHH
Confidence 9999999999999999765432211 1112223223344433223333 11100 000 01111
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEe
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYE 263 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~ 263 (650)
.+ ...|++++++..+.. .+..+. .++..+. ..++++.|++|+|.....+.. ...+.......++.+|.
T Consensus 77 --~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 77 --YY--RGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKRQVS--KERGEKLALDYGIKFME 149 (183)
T ss_dssp --TT--TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC--HHHHHHHHHHHTCEEEE
T ss_pred --HH--hcCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCccCcCC--HHHHHHHHHHcCCeEEE
Confidence 12 245789999886542 111111 2233332 367999999999986421110 11122233445778887
Q ss_pred CC
Q psy8479 264 FP 265 (650)
Q Consensus 264 f~ 265 (650)
..
T Consensus 150 ~S 151 (183)
T 2fu5_C 150 TS 151 (183)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.88 E-value=1.6e-05 Score=87.24 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=48.2
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHH--HHHHHHHHHHHHHHH-CCCcEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKS--ELQKFKTNIMTELTS-NGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~--El~~~K~~I~~~L~~-~~I~if~f~ 265 (650)
.++|++++..+ .++.+.|..++..+.. ..++|.|++|+|..... ....+++.+.+.+.. .++.++...
T Consensus 278 ad~~llviD~~-~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 349 (456)
T 4dcu_A 278 SEVVAVVLDGE-EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 349 (456)
T ss_dssp CSEEEEEEETT-TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred CCEEEEEEeCC-CCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence 46888888865 5888999988888874 67999999999988543 334555555555543 245666554
No 128
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.87 E-value=7.1e-06 Score=78.47 Aligned_cols=106 Identities=14% Similarity=0.205 Sum_probs=57.3
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~y 178 (650)
+.+.+. +|.+|+|||||||.|++..+... .+|+.+....+.+ .++.+. ...+..+. ..|
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~-------~~~ 93 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY--KNICFTVWDVGGQDKIRPLW-------RHY 93 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE--TTEEEEEEECC-----CTTH-------HHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE--CCEEEEEEECCCCHhHHHHH-------HHH
Confidence 344444 99999999999999998764321 1122222222322 333333 11122211 111
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
+ + ..++++|++..+.. .+..+...+...+. ..++++.|++|+|....
T Consensus 94 ~-------~--------~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 94 F-------Q--------NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp H-------H--------TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred h-------c--------cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 1 1 24688888886532 23444433333333 26799999999998764
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.85 E-value=7.1e-05 Score=79.34 Aligned_cols=65 Identities=12% Similarity=0.345 Sum_probs=41.7
Q ss_pred eeEEEEEEcCCCC-CCCcch-HHHHHHhcc---CCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 197 IHVCLYFICPTGH-GLKSLD-LVCMKKLDS---KVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h-~Lk~lD-I~~mk~L~~---~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.|++||++..+.. ++...+ ..++..+.. ..++|.|++|+|.....++... .+.+...++.++...
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRL----EKFVKEKGLNPIKIS 316 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHH----HHHHHHTTCCCEECB
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHH----HHHHHhcCCCeEEEe
Confidence 4689999986532 222222 344444443 6799999999999987765333 334445677777665
No 130
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.85 E-value=6.9e-05 Score=86.74 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=34.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHH-Hhcc-CCCeeeeeecccCCCHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMK-KLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk-~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
.|++||++.++ +++...++.++. .+.. ..+++.|++|+|.+...
T Consensus 201 aD~vL~Vvda~-~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 201 CHAILFVMRAS-QPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp SSEEEEEEETT-STTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred CCEEEEEEeCC-CccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 68999999875 567788888775 4553 55899999999987653
No 131
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.84 E-value=7.1e-06 Score=77.15 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=56.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chh------HHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDS------FKSIVDYIDNQFEA 177 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~------w~~Ii~yI~~qf~~ 177 (650)
+.+ +|.+|+|||||+|.|++.... .+..++.|.......+.+.+..+.+. ... +..+. ..
T Consensus 10 i~l-vG~~gvGKStL~~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-------~~ 79 (188)
T 2wjg_A 10 IAL-IGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIA-------RD 79 (188)
T ss_dssp EEE-ECSTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHH-------HH
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCcc--ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHH-------HH
Confidence 344 999999999999999986432 12223333333322333322111221 011 11221 12
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
|+.. ...+++++++..+. +. ....++..+. ...++|.|++|+|....
T Consensus 80 ~~~~-------------~~~~~~i~v~d~~~--~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 80 YIIN-------------EKPDLVVNIVDATA--LE-RNLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHH-------------HCCSEEEEEEEGGG--HH-HHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred HHhc-------------cCCCEEEEEecchh--HH-HHHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 2221 12467888887642 22 2233444444 46799999999997543
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.83 E-value=2.7e-06 Score=92.97 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=69.6
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCC-ceeec----chhHHHHHHHHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQEN-NVKLK----EDSFKSIVDYIDNQFEAYLQEE 182 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~-g~~L~----~~~w~~Ii~yI~~qf~~yL~eE 182 (650)
+.+ +|.+|+|||||||.|++..+.. .+..++.|.......+.+.+. .+.|. ...+..+-.+-..+...|+
T Consensus 37 I~I-vG~~~vGKSTLin~L~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--- 111 (423)
T 3qq5_A 37 IVV-AGRRNVGKSSFMNALVGQNVSI-VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--- 111 (423)
T ss_dssp EEE-ECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH---
T ss_pred EEE-ECCCCCCHHHHHHHHHcCCCCc-cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH---
Confidence 344 9999999999999999987532 222233333332223333322 22221 0011111000000001111
Q ss_pred HhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHHHHHHHHHHHHHHHH-HCCCc
Q psy8479 183 LKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTELT-SNGVH 260 (650)
Q Consensus 183 ~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~-~~~I~ 260 (650)
.+.++++|++.. +..+.+..+++++.. ..++|+|++|+|....... .+.+.+. ..++.
T Consensus 112 ------------~~aD~vllVvD~---~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~~~~g~~ 171 (423)
T 3qq5_A 112 ------------YRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYESRYEAK 171 (423)
T ss_dssp ------------TSCSEEEEECSS---SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSSCCTTCC
T ss_pred ------------hcCCEEEEEEeC---CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHHHHcCCC
Confidence 135788999875 677888888998875 6799999999999876543 2222332 34666
Q ss_pred EEeCC
Q psy8479 261 IYEFP 265 (650)
Q Consensus 261 if~f~ 265 (650)
++...
T Consensus 172 v~~vS 176 (423)
T 3qq5_A 172 VLLVS 176 (423)
T ss_dssp CCCCS
T ss_pred EEEEE
Confidence 66554
No 133
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.83 E-value=2.4e-05 Score=75.14 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||.+|+|||||||.|++...
T Consensus 29 vG~~~vGKSsLi~~l~~~~~ 48 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGLQG 48 (195)
T ss_dssp ECSTTSSHHHHHHHTCCEEC
T ss_pred ECCCCCCHHHHHHHHHhccC
Confidence 99999999999999987543
No 134
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.81 E-value=4.7e-06 Score=77.89 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=29.7
Q ss_pred eeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 196 RIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 196 RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
..|+++|++..+.. .+..+...+...+. ..++++.|++|+|....
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 46899999987532 34444433333333 45799999999998653
No 135
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.80 E-value=5.6e-05 Score=72.89 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=57.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-----c-hhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-----E-DSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-----~-~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+. .......+.+.+..+.+. + ..+..+.
T Consensus 36 vG~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------------- 95 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR----------------- 95 (204)
T ss_dssp EESTTSSHHHHHHHHHHSCCCC-CCCCS---EEEEEEEEECC-CEEEEEEEEECCSGGGTTTG-----------------
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCcCCee---cceeEEEEEECCEEEEEEEEECCCchhhHHHH-----------------
Confidence 9999999999999999876544322221 122222334444444432 1 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~E 242 (650)
+. .+ ...++++|++..+.. .+..+...++..+. ...++|.|++|+|.....+
T Consensus 96 -~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 -PL--SY--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp -GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred -HH--Hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 11 11 235788888876531 22222223444444 3789999999999876554
No 136
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.80 E-value=9.1e-06 Score=76.88 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=55.3
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.. ..++.+ ++...+.+. ++.+. ...+..+. ..|+
T Consensus 22 vG~~~vGKSsL~~~l~~~~~~~-~~~t~g----~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~-------~~~~------ 81 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDISH-ITPTQG----FNIKSVQSQ--GFKLNVWDIGGQRKIRPYW-------RSYF------ 81 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCCEE-EEEETT----EEEEEEEET--TEEEEEEECSSCGGGHHHH-------HHHH------
T ss_pred ECCCCCCHHHHHHHHhcCCCCc-ccCcCC----eEEEEEEEC--CEEEEEEECCCCHHHHHHH-------HHHh------
Confidence 9999999999999999874321 111122 222223332 33332 12222221 1222
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCCH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTISK 240 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt~ 240 (650)
+ ..|+++|++..+.. .+......+...+. ...+++.|++|+|....
T Consensus 82 -~--------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 82 -E--------NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp -T--------TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred -C--------CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 1 24788888886532 23333333333333 35699999999998764
No 137
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.80 E-value=1.9e-05 Score=75.31 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 34 ~G~~~vGKSsli~~l~~~~~~~ 55 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKRFIW 55 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCS
T ss_pred ECCCCCCHHHHHHHHHhCCCCc
Confidence 9999999999999999876543
No 138
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.79 E-value=3.3e-05 Score=72.78 Aligned_cols=103 Identities=13% Similarity=0.227 Sum_probs=54.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.....++.+ ... ...+.+.+..+.+. ...|..+.
T Consensus 13 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 72 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDCFPENYVPTVF--ENY-TASFEIDTQRIELSLWDTSGSPYYDNVR----------------- 72 (184)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSE--EEE-EEEEECSSCEEEEEEEEECCSGGGTTTG-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccc--eeE-EEEEEECCEEEEEEEEECCCChhhhhhH-----------------
Confidence 99999999999999998765432222211 111 11233333334333 11121111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHH---HHHhccCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVC---MKKLDSKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~---mk~L~~~vnvIPVItKAD~Lt 239 (650)
+. .+ ...|++++++..+.. .+..+...+ ++.....+++|.|.+|+|...
T Consensus 73 -~~--~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 73 -PL--SY--PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp -GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred -Hh--hc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 11 11 235788888876531 122111122 233334679999999999874
No 139
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.78 E-value=3e-05 Score=74.67 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=56.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.....++.+.... ..+.+.+..+.+. ...|..+.
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 74 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVAVDGQIVNLGLWDTAGQEDYSRLR----------------- 74 (212)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE---EEEECSSCEEEEEEECCCCCCCCCC-------------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCccceeEE---EEEEECCEEEEEEEEECCCcHHHHHHH-----------------
Confidence 999999999999999987654332222222221 1233333333332 11222221
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKS 241 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~ 241 (650)
+. .+ ...|++++++..+.. .+..+.-.++..+. ..+++|.|++|+|.....
T Consensus 75 -~~--~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 75 -PL--SY--RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129 (212)
T ss_dssp -CG--GG--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred -Hh--hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCc
Confidence 00 11 135788888876431 12222113344443 368999999999986543
No 140
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.76 E-value=9.8e-06 Score=75.47 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=29.0
Q ss_pred eeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHHH
Q psy8479 197 IHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 197 VH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~E 242 (650)
.|++++++..+.. .+..+...++..+. ..++++.|++|+|.....+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 5788888886531 22222222444444 3789999999999875443
No 141
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.76 E-value=1.3e-05 Score=75.37 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=37.6
Q ss_pred eeEEEEEEcCCCCCCCcchHH----HHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC-cEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLV----CMKKLD------SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV-HIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~----~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I-~if~f~ 265 (650)
.|++++++..+ .+....+.. +.+||. ..++++.|++|+|.... .....+.+.+...++ .+|...
T Consensus 98 ~d~~i~v~D~~-~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~S 172 (198)
T 3t1o_A 98 VDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA----LPVEMVRAVVDPEGKFPVLEAV 172 (198)
T ss_dssp CCEEEEEEECC-GGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC----CCHHHHHHHHCTTCCSCEEECB
T ss_pred CCEEEEEEECC-cchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc----cCHHHHHHHHHhcCCceEEEEe
Confidence 47888888865 222222222 223332 36799999999997543 112234455566777 777664
No 142
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.76 E-value=3e-05 Score=73.91 Aligned_cols=104 Identities=14% Similarity=0.275 Sum_probs=51.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+. .+ ...+.+.+..+.+. ...|..+.
T Consensus 26 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------------- 85 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFD--NF-SAVVSVDGRPVRLQLCDTAGQDEFDKLR----------------- 85 (201)
T ss_dssp ECSTTSSHHHHHHHHHC--------CCSSE--EE-EEEEEETTEEEEEEEEECCCSTTCSSSG-----------------
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcccc--ee-EEEEEECCEEEEEEEEECCCCHHHHHHh-----------------
Confidence 999999999999999987643322222211 11 11223332223322 11121111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISK 240 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~ 240 (650)
+. .+ ...|+++|++..+.. .+..+...++..+. ..+++|.|++|+|....
T Consensus 86 -~~--~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 86 -PL--CY--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp -GG--GG--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred -Hh--hc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 11 11 235788888886531 12221112333333 37899999999998754
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.74 E-value=8.3e-05 Score=70.25 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=18.1
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|.+|+|||||+|.|++.
T Consensus 6 ~i-vG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 6 MI-VGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EE-ESCTTSSHHHHHHHHTCC
T ss_pred EE-ECCCCCCHHHHHHHHhcC
Confidence 44 999999999999999985
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.73 E-value=0.00015 Score=78.23 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=54.3
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCCHHHHHHHHHHHHHHHHH---CCCcEEeCCC-Cch
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTISKSELQKFKTNIMTELTS---NGVHIYEFPT-DDE 269 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~---~~I~if~f~~-d~~ 269 (650)
..+++++++..+.....+...+.+..+.. . .++|.|++|+|....++.......+++.+.. .++.++.... ...
T Consensus 106 ~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~ 185 (410)
T 1kk1_A 106 LMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGA 185 (410)
T ss_dssp GCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTB
T ss_pred hCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCC
Confidence 46789999987632225555555554442 2 3799999999999988766666677777764 4667776653 223
Q ss_pred hHHHHHHHhhh
Q psy8479 270 TMSDVNAAMTI 280 (650)
Q Consensus 270 ~~~~~~~~~~~ 280 (650)
.+..+...+..
T Consensus 186 gi~~L~~~l~~ 196 (410)
T 1kk1_A 186 NIDVLVKAIED 196 (410)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34445444444
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.72 E-value=0.00055 Score=73.78 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCCHHHHHHHHHHHHHHHHHC---CCcEEeCCC-Cchh
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTISKSELQKFKTNIMTELTSN---GVHIYEFPT-DDET 270 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~---~I~if~f~~-d~~~ 270 (650)
.+++++++..+.....+...+.+..+.. . .++|.|++|+|....++.....+.+.+.+... ++.++.... ..+.
T Consensus 99 ~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 178 (403)
T 3sjy_A 99 MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN 178 (403)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcC
Confidence 5789999987643335555555655553 3 38999999999999988888888888777654 456776653 2233
Q ss_pred HHHHHHHhhh
Q psy8479 271 MSDVNAAMTI 280 (650)
Q Consensus 271 ~~~~~~~~~~ 280 (650)
+.++...+..
T Consensus 179 i~~L~~~l~~ 188 (403)
T 3sjy_A 179 IDSLIEGIEE 188 (403)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444443
No 146
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.71 E-value=4.7e-05 Score=73.94 Aligned_cols=103 Identities=13% Similarity=0.208 Sum_probs=54.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+......+.+ ... ...+.+.+..+.+. ...|..+.
T Consensus 34 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------------- 93 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDCFPENYVPTVF--ENY-TASFEIDTQRIELSLWDTSGSPYYDNVR----------------- 93 (205)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSE--EEE-EEEEESSSSEEEEEEEEECCSGGGTTTG-----------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH-----------------
Confidence 99999999999999999765432222211 111 11233333334333 11222111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHh---ccCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKL---DSKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L---~~~vnvIPVItKAD~Lt 239 (650)
+. .+ ...+++++++..+.. .+..+...++..+ ...+++|.|.+|+|...
T Consensus 94 -~~--~~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 94 -PL--SY--PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp -GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred -Hh--hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 11 11 235788888876531 1121111222333 34679999999999874
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.70 E-value=1.5e-05 Score=88.15 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec-chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK-EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~-~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
.|+.+. ||.+|+|||||+|+|++..... .+..++.|..+....+.+.+..+.|. .-.+.... ..+.. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--------~~ve~-~ 292 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI-VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--------DQVEK-I 292 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC-CSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--------hHHHH-H
Confidence 455544 9999999999999999875322 22223333322222233332222222 11111111 11111 1
Q ss_pred hhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHH
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSE 242 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~E 242 (650)
.+.+.. ..=...|+++|++..+ +++...+..+++.+.. .++|.|++|+|.....+
T Consensus 293 gi~~~~--~~~~~aD~vl~VvD~s-~~~~~~~~~i~~~l~~-~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 293 GVERSR--QAANTADLVLLTIDAA-TGWTTGDQEIYEQVKH-RPLILVMNKIDLVEKQL 347 (462)
T ss_dssp --------CCCCSCSEEEEEEETT-TCSCHHHHHHHHHHTT-SCEEEEEECTTSSCGGG
T ss_pred HHHHHh--hhhhcCCEEEEEeccC-CCCCHHHHHHHHhccC-CcEEEEEECCCCCcchh
Confidence 122221 1123467899999876 4778888888888876 59999999999987644
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.69 E-value=0.00012 Score=78.90 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=43.9
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCC-HHHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTIS-KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt-~~El~~~K~~I~~~L~~~~ 258 (650)
..+++++++.++ ++..+...+.+..+.. .++ +|.|++|+|... ...+...+..+++.+...+
T Consensus 89 ~aD~~ilVvda~-~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 89 PLDGCILVVAAN-DGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp CCSEEEEEEETT-TCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCEEEEEEECC-CCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 457899999876 4666766777766653 567 689999999985 4334556667777777665
No 149
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.69 E-value=8.3e-05 Score=69.10 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 13 vG~~~vGKTsli~~l~~~~~~~ 34 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGSYQV 34 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSCCCC
T ss_pred ECCCCCCHHHHHHHHHhCCCCC
Confidence 9999999999999999877654
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.87 E-value=5.5e-06 Score=79.54 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=29.2
Q ss_pred eeEEEEEEcCCC-CCCCcchHHHHHHhcc---CCCeeeeeecccCCCHH
Q psy8479 197 IHVCLYFICPTG-HGLKSLDLVCMKKLDS---KVNIIPIIAKADTISKS 241 (650)
Q Consensus 197 VH~cLYfI~ps~-h~Lk~lDI~~mk~L~~---~vnvIPVItKAD~Lt~~ 241 (650)
.++++|++..+. ..+..+...++..+.. .++++.|++|+|.....
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 567888877543 2344443344555543 67999999999987654
No 151
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.68 E-value=2.3e-05 Score=72.62 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||||.|++..+.
T Consensus 12 ~G~~~~GKssl~~~l~~~~~~ 32 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQETFG 32 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGGTT
T ss_pred ECcCCCCHHHHHHHHHhCcCC
Confidence 999999999999999987653
No 152
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.67 E-value=5.1e-06 Score=79.58 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.5
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 39 vG~~~~GKSsli~~l~~~~~~~ 60 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDTYTE 60 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCCCCC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999876543
No 153
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.67 E-value=2.5e-05 Score=82.16 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=61.2
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHH
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAY 178 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~y 178 (650)
+.+.+. +|.+|+|||||||.|++..+... . +|+.+....+.. .++.+. ...+..+. ..|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~--pT~~~~~~~~~~--~~~~l~i~Dt~G~~~~~~~~-------~~~ 229 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---I--PTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW-------RHY 229 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE---E--EETTEEEEEEEE--TTEEEEEEECC-----CCSH-------HHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc---c--cccceEEEEEec--CcEEEEEEECCCCHhHHHHH-------HHH
Confidence 344444 99999999999999998764321 1 133333222322 333332 11111111 111
Q ss_pred HHHHHhhhhcccccCCceeeEEEEEEcCCC-CCCCcchHHHHHHhcc----CCCeeeeeecccCCCHHH
Q psy8479 179 LQEELKIKRSLNTYHDNRIHVCLYFICPTG-HGLKSLDLVCMKKLDS----KVNIIPIIAKADTISKSE 242 (650)
Q Consensus 179 L~eE~~i~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~~----~vnvIPVItKAD~Lt~~E 242 (650)
+ ...+++++++..+. ..+..++..+...+.. .+++|.|++|+|......
T Consensus 230 ~---------------~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 230 F---------------QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp H---------------TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred h---------------ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 1 13578888888653 4455555555555543 678999999999876443
No 154
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=4.1e-05 Score=72.71 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred cCCCCCChhhHhhhhhCcCCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFES 133 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~ 133 (650)
+|.+|+|||||||.|++..+..
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~~ 47 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYVQ 47 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCCC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999877654
No 155
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.64 E-value=8.1e-05 Score=69.06 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.2
Q ss_pred eeecCCCCCChhhHhhhhhCcCC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~~ 131 (650)
.+ +|.+|+|||||+|.|++...
T Consensus 7 ~l-vG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 7 AL-IGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EE-ECSTTSSHHHHHHHHHCCSS
T ss_pred EE-ECCCCCCHHHHHHHHhCCCe
Confidence 44 99999999999999998654
No 156
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.63 E-value=3e-05 Score=79.21 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=75.7
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEE-----EEeeCCcee---e------------c-chhHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHT-----YELQENNVK---L------------K-EDSFKSIVDY 170 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~-----~~l~e~g~~---L------------~-~~~w~~Ii~y 170 (650)
||.+|+|||||||+|++...... +..++.|..+.... ..++..|+. + . ...+..++.|
T Consensus 105 vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 183 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAAKLLLVGSLPVERIEDQR 183 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC-----------CCSCEEECTTSCEEESSCEECCCCCCSHHHHHHHHHTTSSCGGGCCCHH
T ss_pred eCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCCCEEEEECCCcccCcCCCChhhcccccCCHHHHHHHHHHH
Confidence 99999999999999999765432 23333332211001 122333332 1 0 3355667888
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHH
Q psy8479 171 IDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNI 250 (650)
Q Consensus 171 I~~qf~~yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I 250 (650)
|..++..+|.++. .|++ .|.++|+.|..+.+++. |... ..+....+.|
T Consensus 184 l~~~~~~~l~~~y-------------------~i~~-------~d~~~l~~ia~~~g~~~---kgg~---~d~~~aa~~~ 231 (262)
T 3cnl_A 184 IFERAFEIFARSI-------------------GIES-------SFSEFFEDFARKRGLLK---KGGV---PDIERALMLF 231 (262)
T ss_dssp HHHHHHHHHHHHH-------------------TCCC-------CHHHHHHHHHHHTTCBC---GGGC---BCHHHHHHHH
T ss_pred HHHhCHHHHHHHc-------------------CcCC-------CcHHHHHHHHHHhCCcc---CCCc---ccHHHHHHHH
Confidence 8888877776643 2221 14789999998888774 6542 2566778889
Q ss_pred HHHHHHCCCcEEeCCC
Q psy8479 251 MTELTSNGVHIYEFPT 266 (650)
Q Consensus 251 ~~~L~~~~I~if~f~~ 266 (650)
.+++...+|..|.++.
T Consensus 232 l~d~~~g~l~~~~l~~ 247 (262)
T 3cnl_A 232 FTEVAQGKAGRVSFER 247 (262)
T ss_dssp HHHHHTTTTCSCCSCC
T ss_pred HHHHHcCCCCceECCC
Confidence 9999999999998874
No 157
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.63 E-value=6.8e-05 Score=71.47 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=55.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|++..+.. ..++.+.+ ...+.+. ++.+. ...+..+
T Consensus 29 vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~----~~~~~~~--~~~~~i~Dt~G~~~~~~~------------------ 83 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT----SEELAIG--NIKFTTFDLGGHIQARRL------------------ 83 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCCC-CCCCCSCE----EEEEEET--TEEEEEEECCCSGGGTTS------------------
T ss_pred ECCCCCCHHHHHHHHhcCCCCc-cccCCCCC----eEEEEEC--CEEEEEEECCCCHHHHHH------------------
Confidence 9999999999999999876543 22222222 2223333 23332 1111111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
.+. .+. ..|+++|++..+.. .+......+...+. ...+++.|++|+|...
T Consensus 84 ~~~--~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 84 WKD--YFP--EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGG--GCT--TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHH--HHh--cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 111 122 35789999987642 23333332223322 4679999999999865
No 158
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.60 E-value=1.1e-05 Score=78.38 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=64.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
+|.+|+|||||||.|+...+.......++.+.. ...+.+...++.+. ...+..+. ..|+
T Consensus 21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~------ 85 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGPIKFNVWDTAGQEKFGGLR-------DGYY------ 85 (221)
T ss_dssp EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEE--EEEEEETTEEEEEEEEEECSGGGTSCCC-------HHHH------
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCChHHHhHHH-------HHHH------
Confidence 999999999999997655433332333332222 22233333333332 11111111 0111
Q ss_pred hhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcE
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHI 261 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~i 261 (650)
...|++++++..+.. .+..+. .++..+. ..+++|.|++|+|........ .........++.+
T Consensus 86 ---------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~ 151 (221)
T 3gj0_A 86 ---------IQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHRKKNLQY 151 (221)
T ss_dssp ---------TTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSSCG----GGCCHHHHHTCEE
T ss_pred ---------hcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCccccccccH----HHHHHHHHcCCEE
Confidence 135788888876531 122221 2233332 477999999999986533211 1222334456777
Q ss_pred EeCC
Q psy8479 262 YEFP 265 (650)
Q Consensus 262 f~f~ 265 (650)
|...
T Consensus 152 ~~~S 155 (221)
T 3gj0_A 152 YDIS 155 (221)
T ss_dssp EECB
T ss_pred EEEe
Confidence 7664
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.59 E-value=1.7e-05 Score=87.98 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=31.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt 239 (650)
.+++||++..+ .+....+.++++.+ ...++|.|++|+|...
T Consensus 324 aD~vl~VvD~s-~~~s~~~~~il~~l-~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 324 ADIVLFVLDAS-SPLDEEDRKILERI-KNKRYLVVINKVDVVE 364 (482)
T ss_dssp CSEEEEEEETT-SCCCHHHHHHHHHH-TTSSEEEEEEECSSCC
T ss_pred ccEEEEEecCC-CCCCHHHHHHHHHh-cCCCEEEEEECccccc
Confidence 46889999865 34556677777777 4679999999999864
No 160
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.58 E-value=9.3e-06 Score=83.43 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=57.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhH------HHHHHHHHHHHHH
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSF------KSIVDYIDNQFEA 177 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w------~~Ii~yI~~qf~~ 177 (650)
+.+ ||.+|+|||||+|.|++.... .+..++.|+......+.. +..+.+. .+.+ ..+. ..
T Consensus 6 I~l-vG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~-------~~ 74 (272)
T 3b1v_A 6 IAL-IGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA-------RD 74 (272)
T ss_dssp EEE-ECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH-------HH
T ss_pred EEE-ECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHH-------HH
Confidence 345 999999999999999987532 333344443222111111 1122222 1111 1111 22
Q ss_pred HHHHHHhhhhcccccCCceeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 178 YLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 178 yL~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
|+. ..+.+++++++..+. + +..+.+..+|. ..+++|.|++|+|...
T Consensus 75 ~~~-------------~~~~d~vi~V~D~t~--~-e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 75 YLL-------------SQRADSILNVVDATN--L-ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHH-------------TTCCSEEEEEEEGGG--H-HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HHh-------------cCCCCEEEEEecCCc--h-HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 221 124678888888653 2 22334444444 4679999999999753
No 161
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.58 E-value=0.00029 Score=76.03 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=49.6
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhcc-C-CCeeeeeecccCCCHHHHHHHHHHHHHHHHH---CCCcEEeCCC-Cch
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLDS-K-VNIIPIIAKADTISKSELQKFKTNIMTELTS---NGVHIYEFPT-DDE 269 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~---~~I~if~f~~-d~~ 269 (650)
..+++++++..+.....+...+.+..+.. . .++|+|++|+|....++.......+++.+.. .++.++.... ..+
T Consensus 104 ~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~ 183 (408)
T 1s0u_A 104 LMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEA 183 (408)
T ss_dssp CCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------
T ss_pred hCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCC
Confidence 56889999987632225555555554442 2 3799999999998866544444556666654 3567776653 222
Q ss_pred hHHHHHHHhhh
Q psy8479 270 TMSDVNAAMTI 280 (650)
Q Consensus 270 ~~~~~~~~~~~ 280 (650)
.+.++...+..
T Consensus 184 gi~~L~~~l~~ 194 (408)
T 1s0u_A 184 NIDVLLKAIQD 194 (408)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 162
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.57 E-value=0.00042 Score=75.77 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=37.4
Q ss_pred eeEEEEEEcCCCCCCC-------cchHHHHHHhc-cCCC-eeeeeecccCCCH----HHHHHHHHHHHHHHHHCC
Q psy8479 197 IHVCLYFICPTGHGLK-------SLDLVCMKKLD-SKVN-IIPIIAKADTISK----SELQKFKTNIMTELTSNG 258 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk-------~lDI~~mk~L~-~~vn-vIPVItKAD~Lt~----~El~~~K~~I~~~L~~~~ 258 (650)
.+++++++..+ .+.. +...+.+..+. ..++ +|.|++|+|.... ......++.+...+...+
T Consensus 119 aD~~ilVVDa~-~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g 192 (439)
T 3j2k_7 119 ADLAVLVISAR-KGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG 192 (439)
T ss_pred CCEEEEEEECC-CCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhc
Confidence 57889998875 3433 34555555554 3555 9999999998753 334444555555454433
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.57 E-value=0.00011 Score=75.43 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred Cceee-cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec------chhHHHHHHHHHHHHHHHH
Q psy8479 107 GKAYK-PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYL 179 (650)
Q Consensus 107 g~~Fn-VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL 179 (650)
.+.+. +|.+|+|||||||.|++..+......+.+ ......+.+.+..+.+. ...+..+.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 220 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGLEDYDRLR----------- 220 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE---EEEEEEEEETTEEEEEEEEEECCCGGGTTTG-----------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc---ceeEEEEEECCEEEEEEEEeCCCchhhhHHH-----------
Confidence 34344 99999999999999998765443222221 11122233333333322 11221111
Q ss_pred HHHHhhhhcccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc---cCCCeeeeeecccCCCH
Q psy8479 180 QEELKIKRSLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD---SKVNIIPIIAKADTISK 240 (650)
Q Consensus 180 ~eE~~i~R~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~ 240 (650)
.. .+ ...|+++|++..+.. .+..+...+++.+. ..+++|.|++|+|....
T Consensus 221 -------~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 -------PL--SY--PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp -------GG--GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred -------HH--hc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 11 11 245788888886531 22222212333333 37899999999998754
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.56 E-value=0.0002 Score=77.94 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=41.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CC-CeeeeeecccCCC--HHHHHHHHHHHHHHHHHCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KV-NIIPIIAKADTIS--KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt--~~El~~~K~~I~~~L~~~~ 258 (650)
.|++++++..+ .+..+...+.+..+.. .+ ++|+|++|+|... ++.+...+..+.+.+...+
T Consensus 128 aD~~ilVvDa~-~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 128 CDLAIILVDAR-YGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp CSEEEEEEETT-TCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 57899999865 4666666666555543 34 5899999999986 4445555666666665544
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.54 E-value=0.0001 Score=79.52 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=42.8
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCC-eeeeeecccCCC-HHHHHHHHHHHHHHHHHCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVN-IIPIIAKADTIS-KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vn-vIPVItKAD~Lt-~~El~~~K~~I~~~L~~~~ 258 (650)
.+++++++.++ .+..+...+.+..+.. .++ +|.|++|+|... ...+...+..+++.+...+
T Consensus 99 aD~~ilVvda~-~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 99 MDGAILVVSAA-DGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CSSEEEEEETT-TCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 46788888875 4666777777776653 567 889999999985 4434555666766666654
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.52 E-value=0.00026 Score=75.79 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chh---HHHHHHHHHHHHHHHHHHHHhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDS---FKSIVDYIDNQFEAYLQEELKI 185 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~---w~~Ii~yI~~qf~~yL~eE~~i 185 (650)
||.+|+|||||+|.|++..... +..++.|.......+.+.+..+.+. ..- -..++ ++|...+.. +
T Consensus 185 vG~~naGKSTLln~L~~~~~~~--~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv----e~f~~tl~~---~ 255 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKV--DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV----DAFFVTLSE---A 255 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH----HHHHHHHHG---G
T ss_pred ECCCCCCHHHHHHHHHCCCccc--cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH----HHHHHHHHH---H
Confidence 9999999999999999976422 2222223222222333332222221 100 01111 223333321 1
Q ss_pred hhcccccCCceeeEEEEEEcCCCCCCCcch------HHHHHHhc-cCCCeeeeeecccCCCHH
Q psy8479 186 KRSLNTYHDNRIHVCLYFICPTGHGLKSLD------LVCMKKLD-SKVNIIPIIAKADTISKS 241 (650)
Q Consensus 186 ~R~~~~~~D~RVH~cLYfI~ps~h~Lk~lD------I~~mk~L~-~~vnvIPVItKAD~Lt~~ 241 (650)
+ ..++++|++..+. .....+ .++++.+. ...++|.|++|+|.++..
T Consensus 256 -~--------~aD~il~VvD~s~-~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 256 -K--------YSDALILVIDSTF-SENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp -G--------GSSEEEEEEETTS-CHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred -H--------hCCEEEEEEECCC-CcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 1 1246777776543 221112 34555554 457999999999998753
No 167
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.50 E-value=0.00019 Score=79.23 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=38.6
Q ss_pred eeEEEEEEcCCCCC------CCcchHHHHHHhcc-C-CCeeeeeecccCCC--HHHHHHHHHHHHHHHHHC
Q psy8479 197 IHVCLYFICPTGHG------LKSLDLVCMKKLDS-K-VNIIPIIAKADTIS--KSELQKFKTNIMTELTSN 257 (650)
Q Consensus 197 VH~cLYfI~ps~h~------Lk~lDI~~mk~L~~-~-vnvIPVItKAD~Lt--~~El~~~K~~I~~~L~~~ 257 (650)
.+++++++..+... +.....+.+..+.. . .++|.|++|+|... .......++.+...+...
T Consensus 135 aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~ 205 (483)
T 3p26_A 135 ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDI 205 (483)
T ss_dssp CSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHc
Confidence 57889998875321 44555555555543 3 36999999999886 444555566666555543
No 168
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.50 E-value=5.9e-05 Score=72.51 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=51.0
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec---chhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK---EDSFKSIVDYIDNQFEAYLQEELKIKRS 188 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~---~~~w~~Ii~yI~~qf~~yL~eE~~i~R~ 188 (650)
+|.+|+|||||||.|.+..+... .++.+.+. ..+.+. ++.+. ..... +| ..+.+.
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~~~-~~t~~~~~----~~~~~~--~~~l~i~Dt~G~~--------~~-------~~~~~~ 88 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS----EELTIA--GMTFTTFDLGGHI--------QA-------RRVWKN 88 (198)
T ss_dssp EEETTSSHHHHHHHHSCC-------CCCCCSC----EEEEET--TEEEEEEEECC-------------------CCGGGG
T ss_pred ECCCCCCHHHHHHHHhcCCCCcc-CCCCCcee----EEEEEC--CEEEEEEECCCcH--------hh-------HHHHHH
Confidence 99999999999999998765321 12222221 122222 23322 00100 00 001111
Q ss_pred ccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 189 LNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 189 ~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
.+. ..|+++|++..+.. .+......+...+. ...+++.|++|+|...
T Consensus 89 --~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 89 --YLP--AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp --GGG--GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred --HHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 111 35789999886532 23333333333332 3579999999999864
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.46 E-value=0.00021 Score=77.99 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=43.4
Q ss_pred eeeEEEEEEcCCCCC-------CCcchHHHHHHhcc-CC-CeeeeeecccCCC----HHHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHG-------LKSLDLVCMKKLDS-KV-NIIPIIAKADTIS----KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~-------Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt----~~El~~~K~~I~~~L~~~~ 258 (650)
..+++++++..+. + +.+...+.+..+.. .+ ++|+|++|+|... ++.+...+..+++.+...+
T Consensus 107 ~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 107 QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 4678999998765 5 55555555555443 34 6899999999987 4455667777777776655
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.35 E-value=0.00039 Score=81.15 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=36.0
Q ss_pred eeeEEEEEEcCCCCCCCcchH-HHHHHhcc-CCCeeeeeecccCCCHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDL-VCMKKLDS-KVNIIPIIAKADTISKSE 242 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI-~~mk~L~~-~vnvIPVItKAD~Lt~~E 242 (650)
+.+++|++++. .+.+...|. .++++|.. ..++|.|+||+|.+...+
T Consensus 187 ~aDlIL~VVDA-s~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 187 ENCLILAVSPA-NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp TTEEEEEEEET-TSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTC
T ss_pred CCcEEEEEEcC-CCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcch
Confidence 34567777665 467888887 79999985 569999999999997654
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.31 E-value=0.00022 Score=76.49 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=38.7
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCe-eeeee-cccCCCHHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNI-IPIIA-KADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnv-IPVIt-KAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
.+++++++. ..+..+...+.+..+.. .++. |.|++ |+|. ..+.....+..+++.+..
T Consensus 84 aD~ailVvd--~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 84 SDIAVLCIP--PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG 143 (370)
T ss_dssp CSEEEEEEC--TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEEc--CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh
Confidence 468888888 46777766666665553 5676 99999 9999 765555555555555443
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00053 Score=78.19 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=39.8
Q ss_pred eeeEEEEEEcCCCC------CCCcchHHHHHHhcc-CC-CeeeeeecccCCC--HHHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGH------GLKSLDLVCMKKLDS-KV-NIIPIIAKADTIS--KSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h------~Lk~lDI~~mk~L~~-~v-nvIPVItKAD~Lt--~~El~~~K~~I~~~L~~~~ 258 (650)
..+++|+++..+.. .+.+...+.+..+.. .+ ++|.|++|+|... .......+..+...+...+
T Consensus 268 ~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g 340 (611)
T 3izq_1 268 QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG 340 (611)
T ss_dssp CCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhc
Confidence 36899999986521 134455555555543 33 5999999999986 4445555666665555433
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.27 E-value=0.00014 Score=82.64 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=39.6
Q ss_pred eeeEEEEEEcCCCC----CC--CcchHHHHHHhcc-CCC-eeeeeecccCCC--HHHHHHHHHHHHHHH-HHCC
Q psy8479 196 RIHVCLYFICPTGH----GL--KSLDLVCMKKLDS-KVN-IIPIIAKADTIS--KSELQKFKTNIMTEL-TSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h----~L--k~lDI~~mk~L~~-~vn-vIPVItKAD~Lt--~~El~~~K~~I~~~L-~~~~ 258 (650)
..+++|+++..+.. ++ .+...+.+..+.. .++ +|+|++|+|... +..+...++.+...+ ...+
T Consensus 278 ~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g 351 (592)
T 3mca_A 278 SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG 351 (592)
T ss_dssp ----CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred hCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhC
Confidence 35677777776521 34 6666666666653 454 999999999875 666666677777666 4444
No 174
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.23 E-value=0.00062 Score=67.30 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=60.1
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEE--EEEEEeeCCceeec------chhHHHHHHHHHHHHHHHHHHHH
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLK--AHTYELQENNVKLK------EDSFKSIVDYIDNQFEAYLQEEL 183 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~--~~~~~l~e~g~~L~------~~~w~~Ii~yI~~qf~~yL~eE~ 183 (650)
||.+||||||||+.+....+..... +|+.+. ...+.+.+..+.|. .+.+..+. ..|+
T Consensus 19 vGd~~VGKTsLi~r~~~~~f~~~~~----~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~-------~~~~---- 83 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDSFDNTYQ----ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI-------PSYI---- 83 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCGGGH-------HHHH----
T ss_pred ECcCCcCHHHHHHHHHhCCCCCCcC----CccceEEEEEEEEecceEEEEEEEECCCchhhhhHH-------HHHh----
Confidence 9999999999999999776544322 222222 22333444444443 22333333 1121
Q ss_pred hhhhcccccCCceeeEEEEEEcCCC-CCCCcch--HHHHH-HhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCC
Q psy8479 184 KIKRSLNTYHDNRIHVCLYFICPTG-HGLKSLD--LVCMK-KLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGV 259 (650)
Q Consensus 184 ~i~R~~~~~~D~RVH~cLYfI~ps~-h~Lk~lD--I~~mk-~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I 259 (650)
| + .++++++...+. ..+..+. +..++ .....+++|.|.+|+|.....+. -.....+....+++
T Consensus 84 ---~------~--a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 84 ---R------D--SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV 150 (216)
T ss_dssp ---T------T--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC
T ss_pred ---c------c--ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhCC
Confidence 1 1 234555554332 1222222 12222 22356799999999996432111 11122333345578
Q ss_pred cEEeCC
Q psy8479 260 HIYEFP 265 (650)
Q Consensus 260 ~if~f~ 265 (650)
.+|...
T Consensus 151 ~~~e~S 156 (216)
T 4dkx_A 151 MFIETS 156 (216)
T ss_dssp EEEEEB
T ss_pred eeEEEe
Confidence 877665
No 175
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.22 E-value=0.00023 Score=78.39 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=57.6
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeCCceeec----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLK----EDSFKSIVDYIDNQFEAYLQEELKIKR 187 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e~g~~L~----~~~w~~Ii~yI~~qf~~yL~eE~~i~R 187 (650)
||.+|+|||||||.|.+..+.. .. +|+.++...+.+.+..+.|. ...+..+. +
T Consensus 328 vG~~nvGKSsLl~~l~~~~~~~-~~----~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------------~ 384 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQSVT-TI----PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW------------------R 384 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCC-CC----CCSSEEEEEEESSSCEEEEEEECCCGGGSGGG------------------G
T ss_pred EcCCCCCHHHHHHHHhcCCCCC-cC----CccceeEEEEEeCCEEEEEEECCCcHHHHHHH------------------H
Confidence 9999999999999999887432 11 23334333333332222222 12222221 1
Q ss_pred cccccCCceeeEEEEEEcCCCC-CCCcchHHHHHHhc----cCCCeeeeeecccCCC
Q psy8479 188 SLNTYHDNRIHVCLYFICPTGH-GLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 239 (650)
Q Consensus 188 ~~~~~~D~RVH~cLYfI~ps~h-~Lk~lDI~~mk~L~----~~vnvIPVItKAD~Lt 239 (650)
. .+ ...+++++++..+.. ++..+...+...+. ..+++|.|++|+|...
T Consensus 385 ~--~~--~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 385 H--YY--TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp G--GG--TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred H--Hh--ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 1 11 235788888876532 34444444444444 3679999999999864
No 176
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.20 E-value=0.00055 Score=72.49 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=40.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHH---HHHh---ccCCCeeeeeecccCCCHHHHHHHHH----HHHHHHHH-----CCCcE
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVC---MKKL---DSKVNIIPIIAKADTISKSELQKFKT----NIMTELTS-----NGVHI 261 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~---mk~L---~~~vnvIPVItKAD~Lt~~El~~~K~----~I~~~L~~-----~~I~i 261 (650)
.|+++|++..+.+ ....--.+ ++.+ ...++++.|.+|+|....+++...++ ...+.|.+ +++.+
T Consensus 73 a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 73 VGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred CCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 4789999987654 32221112 2222 24679999999999998776543333 33344544 34555
Q ss_pred EeCCC
Q psy8479 262 YEFPT 266 (650)
Q Consensus 262 f~f~~ 266 (650)
|.-..
T Consensus 152 ~eTSA 156 (331)
T 3r7w_B 152 YLTSI 156 (331)
T ss_dssp ECCCS
T ss_pred EEecc
Confidence 55443
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.19 E-value=9.5e-05 Score=82.62 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=38.8
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc---cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD---SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~---~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
.+++++++..+. . +....++..|. ...++|.|++|+|.....+.. ...+++.+...++.+|...
T Consensus 122 ~d~ii~V~D~s~--~-~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 122 SSVYMLLLDSRT--D-SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERFPAIENRFHRIS 188 (535)
T ss_dssp SEEEEEEECGGG--G-GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHCGGGTTCEEECC
T ss_pred CcEEEEEEeCCC--c-hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHHHHhcCCceEEEe
Confidence 457777777643 2 22333444444 457999999999987543321 2344555566677777765
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.00033 Score=81.03 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=41.2
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
.+++|+++.++ .++...+..+++.+. ..+++|+|++|+|.... +.....+.+++.|
T Consensus 99 aD~~llVvDa~-~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~~l 155 (693)
T 2xex_A 99 LDGAVTVLDAQ-SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHDRL 155 (693)
T ss_dssp CSEEEEEEETT-TBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHHHH
T ss_pred CCEEEEEECCC-CCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHHHh
Confidence 56899999876 577778888888776 47799999999999864 3444445555444
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.13 E-value=0.00021 Score=78.54 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=39.6
Q ss_pred eeeEEEEEEcCCCCCCCc-------chHHHHHHhc-cCCC-eeeeeecccCC--CHHHHHHHHHHHHHHHHHCC
Q psy8479 196 RIHVCLYFICPTGHGLKS-------LDLVCMKKLD-SKVN-IIPIIAKADTI--SKSELQKFKTNIMTELTSNG 258 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~-------lDI~~mk~L~-~~vn-vIPVItKAD~L--t~~El~~~K~~I~~~L~~~~ 258 (650)
..|++++++..+ .+..+ ...+.+..+. ..++ +|+|++|+|.. ..+.+...+..+++.+...+
T Consensus 108 ~aD~~ilVvda~-~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g 180 (458)
T 1f60_A 108 QADCAILIIAGG-VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 180 (458)
T ss_dssp CCSEEEEEEECS-HHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEEEEeCC-cCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcC
Confidence 467899999865 23222 3444444333 2454 99999999998 45556666777776666554
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.12 E-value=0.00032 Score=67.06 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.1
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||||.|++..+.
T Consensus 11 vG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp ESSTTSSHHHHHHHHHHSCCC
T ss_pred ECcCCCCHHHHHHHHhcCCCC
Confidence 999999999999999997654
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.00066 Score=73.44 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred eeecCCCCCChhhHhhhhhCcC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~ 130 (650)
.+ ||.+|+|||||+|+|++.+
T Consensus 4 ~i-vG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 4 GV-VGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EE-EECTTSSHHHHHHHHHC--
T ss_pred EE-ECCCCCCHHHHHHHHHCCC
Confidence 45 9999999999999999987
No 182
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.0014 Score=64.40 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.5
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
||.+|||||||+|.|.+..
T Consensus 43 vG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 9999999999999999754
No 183
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.97 E-value=0.0038 Score=67.91 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=25.2
Q ss_pred CCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 211 LKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 211 Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
.+..++.+.+.|.. ..+++.|+||+|.+-
T Consensus 160 ~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 160 FKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 78889999999985 679999999999873
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.96 E-value=0.00063 Score=76.29 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.9
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
..+++++++.++ .++......+++.+. ..+++|+|++|+|...... ......|.+.|
T Consensus 105 ~aD~~IlVvDa~-~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i~~~l 162 (529)
T 2h5e_A 105 AVDCCLMVIDAA-KGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEVENEL 162 (529)
T ss_dssp GCSEEEEEEETT-TCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHHHHHH
T ss_pred HCCEEEEEEeCC-ccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHHHHHh
Confidence 357899999875 467777777777776 4679999999999876532 22333444444
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.94 E-value=0.0022 Score=69.90 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=38.2
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhc------cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLD------SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFP 265 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~------~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~ 265 (650)
|++++|+++..+...+..+. ..++.+. ...|.|.|++|.|...... ...+++.+...++.++...
T Consensus 235 ra~~lL~vvDls~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEEA----VKALADALAREGLAVLPVS 305 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHHTTTSCEEECC
T ss_pred HHHhhhEEeCCccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHHhcCCeEEEEE
Confidence 45678888876512222222 1222222 1358999999999998722 2344555666677787665
No 186
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.94 E-value=0.00021 Score=80.23 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=36.2
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCCHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKS 241 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt~~ 241 (650)
.+++++++.++ .++....+.+++.+.. .+++|+|++|+|.....
T Consensus 106 aD~allVvDa~-~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 106 VDSALMVIDAA-KGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSEEEEEEETT-TCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred CCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 57889999876 5788888888888874 67999999999997543
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.90 E-value=0.00089 Score=73.77 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=39.5
Q ss_pred eeeEEEEEEcCCCCCC-------CcchHHHHHHhc-cCCC-eeeeeecccCCC----HHHHHHHHHHHHHHHHHC
Q psy8479 196 RIHVCLYFICPTGHGL-------KSLDLVCMKKLD-SKVN-IIPIIAKADTIS----KSELQKFKTNIMTELTSN 257 (650)
Q Consensus 196 RVH~cLYfI~ps~h~L-------k~lDI~~mk~L~-~~vn-vIPVItKAD~Lt----~~El~~~K~~I~~~L~~~ 257 (650)
..|++++++..+. +. .+...+.+..+. ..++ +|+|++|+|... ++.+...+..+++.+...
T Consensus 144 ~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 144 QADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp SCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 4678999998753 32 134445454444 3565 999999999964 455566666676666554
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.88 E-value=0.0025 Score=77.20 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=47.9
Q ss_pred eeeEEEEEEcCCCCCCCcchHHHHHHhc-cCCC-eeeeeecccCCCHHH-HHHHHHHHHHHHHHCC-----CcEEeCC
Q psy8479 196 RIHVCLYFICPTGHGLKSLDLVCMKKLD-SKVN-IIPIIAKADTISKSE-LQKFKTNIMTELTSNG-----VHIYEFP 265 (650)
Q Consensus 196 RVH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vn-vIPVItKAD~Lt~~E-l~~~K~~I~~~L~~~~-----I~if~f~ 265 (650)
..+++++++..+ .+..+...+.+..+. ..++ +|+|++|+|.....+ +...+..+.+.+...+ +.++...
T Consensus 382 ~AD~aILVVDAt-dGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 382 QMDGAILVVAAT-DGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp CCSEEEEEEETT-TCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECC
T ss_pred hCCEEEEEEcCC-ccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEE
Confidence 357899999875 466667777776665 3677 789999999986333 4455667777777665 4666654
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.83 E-value=0.0022 Score=73.78 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=38.9
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
.+++++++.++ .++......+++.+. ..+++|+|++|.|.. .......+.+.+.+.
T Consensus 98 ad~~ilVvD~~-~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 98 ADAALVAVSAE-AGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp CSEEEEEEETT-TCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred cCcEEEEEcCC-cccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 35778888864 577777777777776 468999999999987 334444444554443
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.79 E-value=0.00043 Score=69.70 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=39.4
Q ss_pred eeeEEEEEEcCCCC---CCCcchHHHHHHhc-----cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH-CCCcEEeCC
Q psy8479 196 RIHVCLYFICPTGH---GLKSLDLVCMKKLD-----SKVNIIPIIAKADTISKSELQKFKTNIMTELTS-NGVHIYEFP 265 (650)
Q Consensus 196 RVH~cLYfI~ps~h---~Lk~lDI~~mk~L~-----~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~-~~I~if~f~ 265 (650)
..+++++++..+.. .+..++. ++..+. ..+++|.|.+|+|.....+.. .+.+.... .++.+|...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~~~~e~S 235 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR----DAHTFALSKKNLQVVETS 235 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH----HHHHHHHTSSSCCEEECB
T ss_pred cCCEEEEEEECCCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHHH----HHHHHHHhcCCCeEEEEE
Confidence 36899999987642 4443332 222222 467999999999998765542 33333333 367777664
No 191
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.77 E-value=0.0021 Score=74.24 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=33.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 240 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~ 240 (650)
.+++++++.++ .+........++.+. ..+++++|++|+|....
T Consensus 101 aD~~ilVvDa~-~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 101 LDGAIVVFDSS-QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSEEEEEEETT-TCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECC-CCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 46889998876 466777777777665 47899999999999864
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0012 Score=71.05 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=29.0
Q ss_pred ceeecCCCCCChhhHhhhhhCcCCCCCCCCCCCCcEEEEEEEEEeeC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQE 154 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~~I~~~~~~l~e 154 (650)
+.+ ||..|||||||+|+|.+.+.. .+..|..|+..+...+.+.+
T Consensus 75 V~i-vG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~~~ 118 (376)
T 4a9a_A 75 VGF-VGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRYKG 118 (376)
T ss_dssp EEE-ECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEETT
T ss_pred EEE-ECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEeCC
Confidence 345 999999999999999998633 33445555544433344433
No 193
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.68 E-value=0.0047 Score=70.31 Aligned_cols=83 Identities=11% Similarity=0.156 Sum_probs=45.0
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHh-ccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCC-CchhHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKL-DSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPT-DDETMSDV 274 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L-~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~-d~~~~~~~ 274 (650)
.+++++++..+ .+.....+..+..+ ...+++|+|++|+|..... .....+.+.+.+......++.... ......++
T Consensus 95 aD~aILVVDa~-~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~L 172 (599)
T 3cb4_D 95 CEGALLVVDAG-QGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDV 172 (599)
T ss_dssp CSEEEEEEETT-TCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHH
T ss_pred CCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHHHHhCCCcceEEEeecccCCCchhH
Confidence 36788888765 45555555555444 3578999999999987632 222333444443222223554432 22334444
Q ss_pred HHHhhhc
Q psy8479 275 NAAMTIF 281 (650)
Q Consensus 275 ~~~~~~~ 281 (650)
...+...
T Consensus 173 l~~I~~~ 179 (599)
T 3cb4_D 173 LERLVRD 179 (599)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 4444333
No 194
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.67 E-value=0.0078 Score=69.72 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELT 255 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~ 255 (650)
.+++++++.++ .+.......+++.+. ..+++++|++|+|....+ .......|++.|.
T Consensus 106 aD~aIlVvDa~-~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~-~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 106 LDGAVMVYCAV-GGVQPQSETVWRQANKYKVPRIAFVNKMDRMGAN-FLKVVNQIKTRLG 163 (704)
T ss_pred CCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCccccc-HHHHHHHHHHHhC
Confidence 46888888876 456666666666664 478999999999987653 4445555555553
No 195
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.60 E-value=0.0014 Score=63.18 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=59.9
Q ss_pred ccccccccCCCCCccccccc---ccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 535 TLGRGIVRSPGERKEKNAEF---FSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~---~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
...++||||||+++.-.... .|+.-+..|+.. -..+|+++|+ +..+ +++...+..+
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~d~vi~v-~d~~-~~~~~~~~~~ 136 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQT-------------------RPQLCGMILM-MDAR-RPLTELDRRM 136 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHH-------------------CTTEEEEEEE-EETT-SCCCHHHHHH
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhc-------------------CcCcCEEEEE-EeCC-CCCCHHHHHH
Confidence 46899999999987522211 111122234433 1237788888 4343 4677888888
Q ss_pred HHhccC-cceEEeeeecCCCCCHHHHHHHHHHHHhh
Q psy8479 612 MKKLDS-KVNIIPIIAKADTISKSELQKFKVSKTRV 646 (650)
Q Consensus 612 mk~l~~-~vnviPvIaKaD~lt~~e~~~~K~~i~~~ 646 (650)
++.|.. .+.+|.|+.|+|.+...++......+.+.
T Consensus 137 ~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 172 (223)
T 4dhe_A 137 IEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKS 172 (223)
T ss_dssp HHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHH
Confidence 887763 67899999999999998876655554443
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.58 E-value=0.0016 Score=73.37 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=46.5
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhccCc-ceEEeeeecCCCCCHHHHHHHHHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLDSK-VNIIPIIAKADTISKSELQKFKVSKT 644 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~~-vnviPvIaKaD~lt~~e~~~~K~~i~ 644 (650)
++|++||+ +.++..++.+.+..+++.|... ..+|.|+.|+|.++.+++..+...++
T Consensus 188 ~aD~il~V-vDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 188 RVDLIILL-FDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp HCSEEEEE-EETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEE-EeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 47889999 6676666778888889888754 78999999999999999988877765
No 197
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.50 E-value=0.0011 Score=66.91 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=50.9
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..++||||||+++.-. ........+.. .+...++|++||+ +..+...+...+..+++.|
T Consensus 84 ~~l~liDTpG~~~~~~----~~~~~~~~i~~----------------~l~~~~~~~il~V-~~~d~~~~~~~~~~~~~~l 142 (262)
T 3def_A 84 FTINIIDTPGLVEAGY----VNHQALELIKG----------------FLVNRTIDVLLYV-DRLDVYAVDELDKQVVIAI 142 (262)
T ss_dssp EEEEEEECCCSEETTE----ECHHHHHHHHH----------------HTTTCEECEEEEE-EESSCSCCCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCccc----chHHHHHHHHH----------------HHhcCCCCEEEEE-EcCCCCCCCHHHHHHHHHH
Confidence 4899999999987421 10111222222 1234579999999 6666666777887787777
Q ss_pred cCc------ceEEeeeecCCCCC
Q psy8479 616 DSK------VNIIPIIAKADTIS 632 (650)
Q Consensus 616 ~~~------vnviPvIaKaD~lt 632 (650)
... .++|.|+.|+|...
T Consensus 143 ~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 143 TQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHhchhhhcCEEEEEeCcccCC
Confidence 653 37899999999853
No 198
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.48 E-value=0.00019 Score=80.72 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=34.3
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
.+++++++..+ .+..+..++.+..+.. .+++|.|++|+|...
T Consensus 76 aD~vILVVDa~-dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 76 TDIVILVVAAD-DGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp BSSCEEECBSS-SCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred CCEEEEEEECC-CCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 56788888765 5788888888888874 679999999999864
No 199
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.33 E-value=0.0027 Score=72.15 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=34.4
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhcc-CCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~-~vnvIPVItKAD~Lt 239 (650)
.+++++++..+ +++++...+.++.+.. .+|+|+|++|+|...
T Consensus 94 aD~aILVvDa~-~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 94 ADLAILIVDIN-EGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CSEEEEEEETT-TCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEEEECC-CCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 57888888865 5788888888888874 679999999999874
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.31 E-value=0.0037 Score=73.89 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=31.1
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTI 238 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~L 238 (650)
.+++++++..+ .+....+..+++.+. ..+++|+|++|.|..
T Consensus 122 aD~ailVvDa~-~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 122 TDGALVVVDTI-EGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CSEEEEEEETT-TBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 46788888865 566666776666544 578999999999976
No 201
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.29 E-value=0.0015 Score=62.43 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
||.+|||||||+|.|.+..
T Consensus 12 vG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 9999999999999999643
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.27 E-value=0.0057 Score=64.73 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=36.8
Q ss_pred ceeeEEEEEEcCCCCCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 195 NRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 195 ~RVH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
...++++|++.++... .++.++.--...+++.|++|+|..........++.+.+.|..
T Consensus 191 ~~aD~vl~V~d~~~~~----~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~ 248 (355)
T 3p32_A 191 NMVDTFVLLTLARTGD----QLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRL 248 (355)
T ss_dssp TTCSEEEEEEESSTTC----TTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HhCCEEEEEECCCCCc----cHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhh
Confidence 3568899999875311 111111111124899999999998877777677777666644
No 203
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.07 E-value=0.0071 Score=68.85 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=30.7
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHh-ccCCCeeeeeecccCCCH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKL-DSKVNIIPIIAKADTISK 240 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L-~~~vnvIPVItKAD~Lt~ 240 (650)
.+++++++..+ .+.....+..+..+ ...+++|+|++|+|....
T Consensus 97 aD~aILVVDa~-~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 97 CEGALLLIDAS-QGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp CSEEEEEEETT-TBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECC-CCccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 46788888765 45666665555444 357899999999998753
No 204
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.06 E-value=0.0009 Score=74.62 Aligned_cols=42 Identities=10% Similarity=0.291 Sum_probs=32.5
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTIS 239 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt 239 (650)
.+++++++..+ ++..+..++.+..+. ..+++|+|++|+|...
T Consensus 75 aD~aILVVda~-~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 75 TDIVVLVVAAD-DGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CSSEEEEEETT-TBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred CCEEEEEeecc-cCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 45677777654 567777888887776 4689999999999875
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.06 E-value=0.001 Score=71.17 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred ccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCC-----cccCCcchHHH
Q psy8479 537 GRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPL-----AECLKSLDLVC 611 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~pt-----gh~l~~~Di~~ 611 (650)
.++++|||||++. ..+..|+.. ..-...+++.++|+++|+ +.|. | +|..+|.
T Consensus 213 ~~~liDtPG~~~~--------~~~~~~l~~-----------~~l~~~~~~~~i~~~~~~-l~~~~~~~~g-~l~~l~~-- 269 (369)
T 3ec1_A 213 GATLYDTPGIINH--------HQMAHFVDA-----------RDLKIITPKREIHPRVYQ-LNEGQTLFFG-GLARLDY-- 269 (369)
T ss_dssp TCEEEECCSCCCC--------SSGGGGSCT-----------TTHHHHSCSSCCCCEEEE-ECTTEEEEET-TTEEEEE--
T ss_pred CeEEEeCCCcCcH--------HHHHHHHhH-----------HHHHHHhcccccCceEEE-EcCCceEEEC-CEEEEEE--
Confidence 3899999999763 112233333 111124677899999999 7672 3 4544443
Q ss_pred HHhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 612 MKKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 612 mk~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
++. ..+.+++|++|+|.++.+++......+.+.+
T Consensus 270 l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 270 IKG--GRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp EES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred ccC--CCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 332 3578999999999999888877776666554
No 206
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.95 E-value=0.003 Score=59.32 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=57.6
Q ss_pred ccccccCCCCCccccccc---ccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 537 GRGIVRSPGERKEKNAEF---FSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~~---~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
.+++||||||++.-.... .++.-+..|+.. -..+|+++|+ +..+ ++....++.+++
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~v-~d~~-~~~~~~~~~~~~ 128 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITT-------------------REELKAVVQI-VDLR-HAPSNDDVQMYE 128 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH-------------------CTTEEEEEEE-EETT-SCCCHHHHHHHH
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhh-------------------hhcCCEEEEE-EECC-CCCCHHHHHHHH
Confidence 699999999988643211 121122333333 0246889998 4443 346667776666
Q ss_pred hcc-CcceEEeeeecCCCCCHHHHHHHHHHHHhh
Q psy8479 614 KLD-SKVNIIPIIAKADTISKSELQKFKVSKTRV 646 (650)
Q Consensus 614 ~l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~~ 646 (650)
.+. ..+.+|.|+.|+|.+...++......+.+.
T Consensus 129 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp HHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH
Confidence 664 568899999999999987776655555543
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.54 E-value=0.0047 Score=63.59 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=19.2
Q ss_pred cCCCCCChhhHhhhhhCcCCCCCCCCCCCCcE
Q psy8479 112 PCETGLGKSTLMDSLFNTSFESTPSPHSLPSV 143 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~~~~s~~~~~T~ 143 (650)
||.+|||||||||+|++.+... ++..++.|.
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~ 156 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAK-TGDRPGITT 156 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC-----------
T ss_pred EecCCCchHHHHHHHhcCceee-cCCCCCeee
Confidence 9999999999999999976443 333444443
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.26 E-value=0.01 Score=58.55 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=45.8
Q ss_pred cccccccCCCCCccccc-ccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 536 LGRGIVRSPGERKEKNA-EFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~-~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
..++||||||+++.-.. .... ..+..++...+ ..+|++||. ++.+ .+...+..+++.
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~l~v-~d~~--~~~~~~~~~l~~ 135 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETS-KEIIRCILLTS------------------PGPHALLLV-VPLG--RYTEEEHKATEK 135 (239)
T ss_dssp EEEEEEECCSCC-----CHHHH-HHHHHHHHHTT------------------TCCSEEEEE-EETT--CCSSHHHHHHHH
T ss_pred ceEEEEECCCccCCCCCHHHHH-HHHHHHHHhcC------------------CCCcEEEEE-eeCC--CCCHHHHHHHHH
Confidence 46899999999875322 2122 23334333311 157999999 5443 466677777777
Q ss_pred cc------CcceEEeeeecCCCCCHHHHH
Q psy8479 615 LD------SKVNIIPIIAKADTISKSELQ 637 (650)
Q Consensus 615 l~------~~vnviPvIaKaD~lt~~e~~ 637 (650)
+. ....+|.|+.|+|.+...++.
T Consensus 136 ~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 136 ILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 64 234789999999999877655
No 209
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.20 E-value=0.067 Score=60.80 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ ||++|+|||||+|+|.|.
T Consensus 48 iaI-vG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAV-IGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EEC-CCCTTSCHHHHHHHHHSC
T ss_pred EEE-ECCCCChHHHHHHHHhCC
Confidence 455 999999999999999996
No 210
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.98 E-value=0.0079 Score=56.00 Aligned_cols=90 Identities=17% Similarity=0.035 Sum_probs=56.4
Q ss_pred cccccccCCCCCcccccccc---cccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHH
Q psy8479 536 LGRGIVRSPGERKEKNAEFF---SRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCM 612 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~---~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~m 612 (650)
..+++||||||+........ |+.-+..|+.. -..+++++|+ +.++ .+....+..++
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~vi~v-~d~~-~~~~~~~~~~~ 126 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN-------------------RWSLQMVFLL-VDGR-IPPQDSDLMMV 126 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH-------------------CTTEEEEEEE-EETT-SCCCHHHHHHH
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhc-------------------CcCceEEEEE-ecCC-CCCCHHHHHHH
Confidence 46889999999886443221 21112233333 0357888888 5443 34556666655
Q ss_pred HhccC-cceEEeeeecCCCCCHHHHHHHHHHHHhh
Q psy8479 613 KKLDS-KVNIIPIIAKADTISKSELQKFKVSKTRV 646 (650)
Q Consensus 613 k~l~~-~vnviPvIaKaD~lt~~e~~~~K~~i~~~ 646 (650)
+.+.. .+.+|.|+.|+|.+...++......+.+.
T Consensus 127 ~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 161 (195)
T 3pqc_A 127 EWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKV 161 (195)
T ss_dssp HHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHH
Confidence 55443 57899999999999888777666655543
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.93 E-value=0.0025 Score=68.15 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=54.5
Q ss_pred cccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCC-----cccCCcchHHHH
Q psy8479 538 RGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPL-----AECLKSLDLVCM 612 (650)
Q Consensus 538 ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~pt-----gh~l~~~Di~~m 612 (650)
++++|||||++.- .+..|+.... -...++..++|+++|+ +.|. | +|.-+|. +
T Consensus 213 ~~liDtPG~~~~~--------~~~~~l~~~~-----------l~~~~~~~~i~~~~~~-l~~~~~~~~g-~l~~~d~--l 269 (368)
T 3h2y_A 213 SSLYDTPGIINHH--------QMAHYVGKQS-----------LKLITPTKEIKPMVFQ-LNEEQTLFFS-GLARFDY--V 269 (368)
T ss_dssp CEEEECCCBCCTT--------SGGGGSCHHH-----------HHHHSCSSCCCCEEEE-ECTTEEEEET-TTEEEEE--E
T ss_pred eEEEeCCCcCcHH--------HHHHHhhHHH-----------HHHhccccccCceEEE-EcCCCEEEEc-ceEEEEE--e
Confidence 8999999998731 1222333211 0014556789999999 6662 2 3333332 3
Q ss_pred HhccCcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 613 KKLDSKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 613 k~l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
+. ..+.+++|++|+|.++..++......+.+.+
T Consensus 270 ~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 270 SG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp ES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred cC--CCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 32 3578999999999999888877766665543
No 212
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.84 E-value=0.016 Score=60.10 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=50.5
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
..++++|||||+.+..+ .+..++.+... ..+. .+|++||+ +..+ +++...|..+++.
T Consensus 54 ~~~l~l~DTpG~~~~~~-------~l~~~~~~~~~------------~~l~--~ad~il~V-vD~~-~~~~~~~~~i~~~ 110 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMD-------ALGEFMDQEVY------------EALA--DVNAVVWV-VDLR-HPPTPEDELVARA 110 (301)
T ss_dssp TEEEEEEECCCCCCCCS-------HHHHHHHHHHH------------HHTS--SCSEEEEE-EETT-SCCCHHHHHHHHH
T ss_pred CcEEEEecCccccchhh-------HHHHHHHHHHH------------HHHh--cCCEEEEE-EECC-CCCChHHHHHHHH
Confidence 46899999999987422 11111111000 0111 37899999 5554 3467777777666
Q ss_pred ccC---cceEEeeeecCCCCCHHH
Q psy8479 615 LDS---KVNIIPIIAKADTISKSE 635 (650)
Q Consensus 615 l~~---~vnviPvIaKaD~lt~~e 635 (650)
|.. .+.+|.|+.|+|.....+
T Consensus 111 l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 111 LKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HGGGTTTSCEEEEEECGGGCSSHH
T ss_pred HHhhcCCCCEEEEEECcccCCchH
Confidence 665 688999999999997665
No 213
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.76 E-value=0.028 Score=53.28 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSFE 132 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~~ 132 (650)
+|.+|+|||||||.|.+....
T Consensus 35 vG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EECTTSSHHHHHHHHHHSCCC
T ss_pred ECcCCCCHHHHHHHHhcCCCC
Confidence 999999999999999987544
No 214
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.28 E-value=0.027 Score=64.03 Aligned_cols=20 Identities=30% Similarity=0.150 Sum_probs=19.0
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||++|+|||||||+|++...
T Consensus 44 vG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 44 VGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEBTTSSHHHHHHHHTTCSS
T ss_pred ECCCCCCHHHHHHhHcCCCC
Confidence 99999999999999999874
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.25 E-value=0.013 Score=62.54 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.3
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
+|.||+|||||||+|.+...
T Consensus 221 vG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSS
T ss_pred ECCCCccHHHHHHHHhcccc
Confidence 99999999999999998643
No 216
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.02 E-value=0.014 Score=56.43 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.6
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.||+|||||+|.|.+.
T Consensus 7 i~l-vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 7 VVL-SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHhh
Confidence 455 999999999999999874
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.97 E-value=0.016 Score=59.83 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|+||+|||||||+|.+..
T Consensus 175 ~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTC
T ss_pred ECCCCCcHHHHHHHhcccc
Confidence 9999999999999999864
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.96 E-value=0.02 Score=61.95 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCcCC
Q psy8479 112 PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~~ 131 (650)
||.+|+|||||+|+|++.+.
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp ECCSSSSHHHHHHHHHC---
T ss_pred ECCCCCCHHHHHHHHHCCCc
Confidence 99999999999999999865
No 219
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.87 E-value=0.0074 Score=63.15 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.||+|||||||+|.+..
T Consensus 179 vG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EESHHHHHHHHHHHHCC--
T ss_pred ECCCCCCHHHHHHHhcccc
Confidence 9999999999999999864
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.86 E-value=0.015 Score=54.98 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||+|.|.+.
T Consensus 11 ~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.68 E-value=0.026 Score=60.91 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcCC
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTSF 131 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~~ 131 (650)
+|..+- ||.+|+|||||+|+|++.+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 454444 99999999999999999764
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.60 E-value=0.02 Score=56.60 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=21.0
Q ss_pred CCceee-cCCCCCChhhHhhhhhCcC
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~~ 130 (650)
+|--+- +|.||+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 565554 9999999999999999863
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.57 E-value=0.021 Score=59.16 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=15.8
Q ss_pred cCCCCCChhhHhhhhh
Q psy8479 112 PCETGLGKSTLMDSLF 127 (650)
Q Consensus 112 VG~SGvGKSTlINtLf 127 (650)
+|.||+|||||||+|.
T Consensus 171 ~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT 186 (302)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 9999999999999999
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.52 E-value=0.022 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.7
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|--+. +|.||+|||||+|.|.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 453333 999999999999999985
No 225
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.40 E-value=0.026 Score=53.02 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.6
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.||+|||||++.+++
T Consensus 15 ~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ECCTTSCHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHcc
Confidence 99999999999998764
No 226
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.36 E-value=0.019 Score=56.90 Aligned_cols=18 Identities=39% Similarity=0.235 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 36 iG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EECTTSCHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.36 E-value=0.022 Score=60.31 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.4
Q ss_pred Cceee-cCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+..+. +|.+|+|||||+|.|.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 44444 999999999999999973
No 228
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.26 E-value=0.019 Score=61.43 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.1
Q ss_pred eeecCCCCCChhhHhhhhhCcC
Q psy8479 109 AYKPCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~~ 130 (650)
.+ ||.+|+|||||+|+|++..
T Consensus 6 ~I-VG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 6 GI-VGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp EE-ECCTTSSHHHHHHHHHHTC
T ss_pred EE-ECCCCCCHHHHHHHHHCCC
Confidence 44 9999999999999999976
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.19 E-value=0.026 Score=55.38 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+.
T Consensus 29 vGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999984
No 230
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.05 E-value=0.024 Score=57.33 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 39 iG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.02 E-value=0.025 Score=54.02 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 6 ~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999985
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.02 E-value=0.034 Score=55.46 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 37 iG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999985
No 233
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.02 E-value=0.026 Score=56.83 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 234
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.99 E-value=0.026 Score=57.54 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 43 iG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ECCTTSCHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999995
No 235
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.87 E-value=0.028 Score=57.74 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 40 iGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 999999999999999985
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.84 E-value=0.028 Score=56.55 Aligned_cols=18 Identities=39% Similarity=0.313 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 237
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.79 E-value=0.029 Score=55.41 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 41 iG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 238
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.72 E-value=0.03 Score=55.99 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.70 E-value=0.03 Score=53.11 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.4
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.||+|||||++.|.+.
T Consensus 4 i~l-~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVI-SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEE-ESSSSSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHhh
Confidence 345 999999999999999975
No 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.67 E-value=0.031 Score=55.52 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 241
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.62 E-value=0.062 Score=54.79 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=32.3
Q ss_pred ceeeEeeecCCCcccCCcch-HHHHHhccC-cceEEeeeecCCCCCHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLD-LVCMKKLDS-KVNIIPIIAKADTISKSE 635 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D-i~~mk~l~~-~vnviPvIaKaD~lt~~e 635 (650)
.|+++|+ +.++..++...+ ..+++.+.. ...+|.|+.|+|.+...+
T Consensus 168 ~d~iilv-vd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 168 QNAIIVA-VTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp TTEEEEE-EEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC
T ss_pred CCeEEEE-EEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch
Confidence 5678888 545445565445 467777763 578899999999987554
No 242
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.58 E-value=0.055 Score=54.57 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=46.5
Q ss_pred ccccccccCCCCCcccc---cc---cccccccccccccccCCCCCCCCCCCCCCccCCCCceeeE-eeecCCCcccCCcc
Q psy8479 535 TLGRGIVRSPGERKEKN---AE---FFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCAS-KNSDLPLAECLKSL 607 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~---~~---~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~l-yf~i~ptgh~l~~~ 607 (650)
...+++|||||++..-. .+ ..++.-+..|+.. .++++ |+ ++. ..++...
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~il~v-~d~-~~~~~~~ 179 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK----------------------ENCLILAV-SPA-NSDLANS 179 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS----------------------TTEEEEEE-EES-SSCGGGC
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC----------------------CCeEEEEE-ecC-Ccchhhh
Confidence 36899999999986321 01 1221222334332 24454 44 433 3456666
Q ss_pred hH-HHHHhcc-CcceEEeeeecCCCCCHHH
Q psy8479 608 DL-VCMKKLD-SKVNIIPIIAKADTISKSE 635 (650)
Q Consensus 608 Di-~~mk~l~-~~vnviPvIaKaD~lt~~e 635 (650)
++ .+++.+. ....+|.|+.|+|.+...+
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTTC
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCCc
Confidence 75 5777776 3578899999999987543
No 243
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.56 E-value=0.043 Score=55.72 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 38 iG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.49 E-value=0.045 Score=54.68 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECSTTSSHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 245
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.47 E-value=0.052 Score=56.14 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=52.8
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH-HH
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC-MK 613 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~-mk 613 (650)
...+++|||||+++.- .+ ..+..++.... ...+ ..+||++|+ +.++ ++...-+... ++
T Consensus 58 ~~~i~lvDTPG~~~~~----~~-~~l~~~~~~~~------------~~~l--~~aD~il~V-vD~~-~~~~~~~~~~~~~ 116 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPK----KS-DVLGHSMVEIA------------KQSL--EEADVILFM-IDAT-EGWRPRDEEIYQN 116 (308)
T ss_dssp TEEEEEEECCCCCCCC----TT-CHHHHHHHHHH------------HHHH--HHCSEEEEE-EETT-TBSCHHHHHHHHH
T ss_pred CCeEEEEECcCCCccc----cc-hhHHHHHHHHH------------HHHh--hcCCEEEEE-EeCC-CCCCchhHHHHHH
Confidence 4679999999998743 11 11111111100 0011 136889999 5443 3455566666 66
Q ss_pred hccC-cceEEeeeecCCCC-CHHHHHHHHHHHHhh
Q psy8479 614 KLDS-KVNIIPIIAKADTI-SKSELQKFKVSKTRV 646 (650)
Q Consensus 614 ~l~~-~vnviPvIaKaD~l-t~~e~~~~K~~i~~~ 646 (650)
.|.. .+.+|-|+.|+|.+ ....+....+.+.+.
T Consensus 117 ~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 117 FIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp HTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 6554 47789999999998 665555554444443
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.44 E-value=0.04 Score=52.31 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 247
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.43 E-value=0.034 Score=57.09 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 53 iG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 999999999999999985
No 248
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.30 E-value=0.037 Score=55.92 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 32 iG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 999999999999999985
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.23 E-value=0.037 Score=54.21 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=18.1
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|.||+|||||+|.|.+.
T Consensus 23 vl-~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 23 VL-IGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EE-ECCTTSSHHHHHHHHHHH
T ss_pred EE-ECcCCCCHHHHHHHHHhh
Confidence 44 999999999999999975
No 250
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.20 E-value=0.05 Score=54.45 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 251
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.15 E-value=0.039 Score=55.77 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ECCSSSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 252
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.05 E-value=0.054 Score=55.18 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 56 iG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred EcCCCCcHHHHHHHHHcC
Confidence 999999999999999985
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.99 E-value=0.055 Score=55.21 Aligned_cols=18 Identities=39% Similarity=0.331 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 51 ~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 254
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.94 E-value=0.065 Score=56.39 Aligned_cols=77 Identities=21% Similarity=0.145 Sum_probs=46.8
Q ss_pred ccccccccCCCCCccccccc------ccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch
Q psy8479 535 TLGRGIVRSPGERKEKNAEF------FSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD 608 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~------~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D 608 (650)
...|++|||||++..-.... .++.-+..|+.. ..+++|++ ++ ...++...|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~iiL~v-~~-a~~~~~~~~ 185 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---------------------ENCLILAV-SP-ANSDLANSD 185 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS---------------------TTEEEEEE-EE-TTSCGGGCH
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC---------------------CCeEEEEE-ec-CCCccchhH
Confidence 46899999999987422111 121122223322 23345555 53 345677777
Q ss_pred HH-HHHhcc-CcceEEeeeecCCCCCHH
Q psy8479 609 LV-CMKKLD-SKVNIIPIIAKADTISKS 634 (650)
Q Consensus 609 i~-~mk~l~-~~vnviPvIaKaD~lt~~ 634 (650)
.. +++.+. ....+|-|+.|+|.+...
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcc
Confidence 64 788776 356789999999998754
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.93 E-value=0.05 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.5
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
-+.| +|.||+|||||++.|++.
T Consensus 8 ~i~i-~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAF-AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEEE-EeCCCCCHHHHHHHHHHh
Confidence 4566 999999999999999975
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.84 E-value=0.059 Score=54.63 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 47 ~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.80 E-value=0.054 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.8
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+. +|.||+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 454444 999999999999999885
No 258
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.76 E-value=0.06 Score=54.76 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.75 E-value=0.05 Score=54.60 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 30 iG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 260
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.70 E-value=0.062 Score=54.43 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 52 ~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 261
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.69 E-value=0.055 Score=56.93 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=19.8
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|..+. +|.+|+|||||+|.|.+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455444 999999999999999853
No 262
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.61 E-value=0.07 Score=53.26 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=48.7
Q ss_pred cccccccCCCCCccccc--ccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 536 LGRGIVRSPGERKEKNA--EFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~--~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
..++||||||+++.-.. ..++ ..+..++... -..+|++||+ +..+ .+...|..+++
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~-~~i~~~~~~~------------------~~~~d~il~V-~d~~--~~~~~~~~~~~ 127 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGC-EERGHCYLLS------------------APGPHALLLV-TQLG--RFTAQDQQAVR 127 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTS-HHHHHHHHHH------------------TTCCSEEEEE-EETT--BCCHHHHHHHH
T ss_pred cEEEEEECCCCCCCCCCcHHHHH-HHHHHHHHhc------------------CCCCCEEEEE-EeCC--CCCHHHHHHHH
Confidence 56899999999764332 2222 3444433220 1358999999 6554 37777777776
Q ss_pred hccC-------cceEEeeeecCCCCC
Q psy8479 614 KLDS-------KVNIIPIIAKADTIS 632 (650)
Q Consensus 614 ~l~~-------~vnviPvIaKaD~lt 632 (650)
.+.. ..-+|-|+.|.|...
T Consensus 128 ~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 128 QVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHhChhhhccEEEEEEchHhcCC
Confidence 6655 567888999999754
No 263
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.52 E-value=0.067 Score=54.34 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+-
T Consensus 39 iG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 999999999999999985
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.50 E-value=0.061 Score=50.51 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+.-
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999999864
No 265
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.26 E-value=0.049 Score=53.30 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=11.8
Q ss_pred cCCCCCChhhHhhhhh-Cc
Q psy8479 112 PCETGLGKSTLMDSLF-NT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf-~~ 129 (650)
+|.||+|||||++.|. +.
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECSCC----CHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 9999999999999999 64
No 266
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.24 E-value=0.048 Score=52.36 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.5
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.| +|.+|+|||||+|.|++.
T Consensus 33 i~i-~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 33 VNI-MGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEE-EECTTSCHHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHHH
Confidence 445 999999999999999975
No 267
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.20 E-value=0.092 Score=50.15 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred cccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCC--cccCCcchHHH
Q psy8479 534 TTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPL--AECLKSLDLVC 611 (650)
Q Consensus 534 ~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~pt--gh~l~~~Di~~ 611 (650)
....+++|||||+... . ..+..|+... + .+.|+++|+ +..+ ...+..+.-.+
T Consensus 53 ~~~~~~l~Dt~G~~~~------~-~~~~~~~~~~----------------~--~~~~~~i~v-~D~~~~~~~~~~~~~~~ 106 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKL------R-YKLSDYLKTR----------------A--KFVKGLIFM-VDSTVDPKKLTTTAEFL 106 (218)
T ss_dssp GGSSCEEEECCCCGGG------T-HHHHHHHHHH----------------G--GGEEEEEEE-EETTSCTTCCHHHHHHH
T ss_pred eCceEEEEECCCcHHH------H-HHHHHHHHhc----------------c--ccCCEEEEE-EECCCChHHHHHHHHHH
Confidence 5578999999999541 1 2334555431 0 247889998 4444 23344333322
Q ss_pred HHhc-------cCcceEEeeeecCCCCCHHHHHHHHH
Q psy8479 612 MKKL-------DSKVNIIPIIAKADTISKSELQKFKV 641 (650)
Q Consensus 612 mk~l-------~~~vnviPvIaKaD~lt~~e~~~~K~ 641 (650)
+.-+ ...+-+|.|+.|+|.....++..++.
T Consensus 107 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 143 (218)
T 1nrj_B 107 VDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143 (218)
T ss_dssp HHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHH
Confidence 2222 24677999999999988654443333
No 268
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.15 E-value=0.065 Score=53.24 Aligned_cols=76 Identities=13% Similarity=-0.069 Sum_probs=45.6
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..++||||||+++.......+...+..++...+ ..+|+++|+ +.++. +.+.+..+++.|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~------------------~~~d~il~V-~d~~~--~~~~~~~~~~~l 129 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSA------------------PGPHVLLLV-TQLGR--YTSQDQQAAQRV 129 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHT------------------TCCSEEEEE-EETTC--CCHHHHHHHHHH
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcC------------------CCCcEEEEE-EeCCC--CCHHHHHHHHHH
Confidence 469999999998743211111012222222211 246889999 65553 666676665555
Q ss_pred cC------cceEEeeee-cCCCCC
Q psy8479 616 DS------KVNIIPIIA-KADTIS 632 (650)
Q Consensus 616 ~~------~vnviPvIa-KaD~lt 632 (650)
.. ...+|.|+. |+|...
T Consensus 130 ~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 130 KEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhCchhhccEEEEEEcccccCC
Confidence 54 356788888 999874
No 269
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.11 E-value=0.081 Score=61.10 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=46.5
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh-
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK- 614 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~- 614 (650)
..++||||||+++.-. ...-+..|+.. .|++||+ +.++ +++...++++|+.
T Consensus 174 ~~l~LiDTPGl~~~~~----~~~~~~~~i~~----------------------aD~vL~V-vda~-~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA----RNELSLGYVNN----------------------CHAILFV-MRAS-QPCTLGERRYLENY 225 (695)
T ss_dssp TTEEEEECCCHHHHHT----CHHHHTHHHHS----------------------SSEEEEE-EETT-STTCHHHHHHHHHH
T ss_pred CCeEEEECCCCCchhh----HHHHHHHHHHh----------------------CCEEEEE-EeCC-CccchhHHHHHHHH
Confidence 4699999999987321 11122344433 5789999 5443 4566778877764
Q ss_pred ccC-cceEEeeeecCCCCCHH
Q psy8479 615 LDS-KVNIIPIIAKADTISKS 634 (650)
Q Consensus 615 l~~-~vnviPvIaKaD~lt~~ 634 (650)
+.. ...+|.|+.|+|.+...
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGG
T ss_pred HHhhCCCEEEEEECccccccc
Confidence 432 34589999999988653
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.95 E-value=0.08 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.7
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|-.+- +|.+|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 453333 999999999999999985
No 271
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.86 E-value=0.14 Score=49.58 Aligned_cols=46 Identities=11% Similarity=-0.120 Sum_probs=28.4
Q ss_pred ceeeEeeecCCCc-ccCC-cchHHHHHhccC---cceEEeeeecCCCCCHHH
Q psy8479 589 LRCASKNSDLPLA-ECLK-SLDLVCMKKLDS---KVNIIPIIAKADTISKSE 635 (650)
Q Consensus 589 vh~~lyf~i~ptg-h~l~-~~Di~~mk~l~~---~vnviPvIaKaD~lt~~e 635 (650)
.+|++|+ +..+. ..+. .-++.+++.+.. ...+|.|+.|+|.+...+
T Consensus 109 ~d~~i~v-~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 109 NGVILFI-IDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp SEEEEEE-EETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C
T ss_pred ccEEEEE-EecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh
Confidence 3678888 44433 2222 224556666654 678999999999987543
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.86 E-value=0.06 Score=56.13 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|++-
T Consensus 86 vG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ESSSCHHHHHHHHHHTTS
T ss_pred ECCCCchHHHHHHHHHcC
Confidence 999999999999999984
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.70 E-value=0.06 Score=52.82 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 274
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.57 E-value=0.09 Score=56.27 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 60 iGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHhcC
Confidence 999999999999999985
No 275
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.48 E-value=0.074 Score=51.23 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.5
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||+|.|+...
T Consensus 44 vG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999763
No 276
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.37 E-value=0.036 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.2
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
-+.+ ||.||+|||||++.|.+.
T Consensus 4 ~v~I-vG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSI-VGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEE-EESCHHHHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHH
Confidence 4556 999999999999999984
No 277
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.33 E-value=0.13 Score=54.15 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=47.3
Q ss_pred ccccccccCCCCCccccccccc------ccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCccc-CCcc
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFS------RAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAEC-LKSL 607 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~------~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~-l~~~ 607 (650)
...|++|||||+++.-...... ..-+..|+. +.||++++ +.++... ...-
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~----------------------~~d~iilv-v~~~~~~~~~~~ 191 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE----------------------KPNCIILA-ISPANQDLATSD 191 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH----------------------SSSEEEEE-EEETTSCGGGCH
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh----------------------cCCeEEEE-eecccCCcCCHH
Confidence 3579999999998853321111 011122222 24677777 4444333 3355
Q ss_pred hHHHHHhccC-cceEEeeeecCCCCCHH
Q psy8479 608 DLVCMKKLDS-KVNIIPIIAKADTISKS 634 (650)
Q Consensus 608 Di~~mk~l~~-~vnviPvIaKaD~lt~~ 634 (650)
++.+++.+.. ...+|-|+.|+|.+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 5778888875 35789999999998654
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.33 E-value=0.088 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=19.5
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|--+- +|.||+|||||++.|.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 453333 999999999999999984
No 279
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.21 E-value=0.085 Score=53.69 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|+||+|||||++.|.+..
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999963
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.21 E-value=0.079 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=19.4
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 453333 999999999999999884
No 281
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.17 E-value=0.094 Score=54.17 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 70 ~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EESTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999985
No 282
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.11 E-value=0.083 Score=49.27 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=53.1
Q ss_pred cccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCC-c-ccCCcchHHH
Q psy8479 534 TTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPL-A-ECLKSLDLVC 611 (650)
Q Consensus 534 ~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~pt-g-h~l~~~Di~~ 611 (650)
....+.+|||||+... . .....|+... + ...||++|+ +..+ . ..+..+. .+
T Consensus 89 ~~~~~~l~Dt~G~~~~------~-~~~~~~~~~~----------------~--~~~~~~i~v-~d~~~~~~~~~~~~-~~ 141 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKL------R-YKLSDYLKTR----------------A--KFVKGLIFM-VDSTVDPKKLTTTA-EF 141 (193)
T ss_dssp CCTTCSEEEETTCCBS------S-CCHHHHHHHH----------------G--GGEEEEEEE-EETTCCHHHHHHHH-HH
T ss_pred cCCeEEEEECCCCchH------H-HHHHHHHHhh----------------c--ccCCEEEEE-EECCCCchhHHHHH-HH
Confidence 4578999999998652 1 1223444331 1 247899998 5444 1 1222211 12
Q ss_pred HHh--------ccCcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 612 MKK--------LDSKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 612 mk~--------l~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
+.. ....+.+|-|+.|+|.....+...+++.+.+.|
T Consensus 142 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 142 LVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp HHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 222 234678999999999998777777777776654
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.97 E-value=0.1 Score=50.39 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+.
T Consensus 14 ~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp ECCTTSCHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 999999999999999975
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.95 E-value=0.1 Score=49.39 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=17.0
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||+++.|.+.
T Consensus 12 ~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ECSTTSCHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.93 E-value=0.1 Score=54.46 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 132 vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 999999999999999974
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.93 E-value=0.084 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.0
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|.+|+|||||++.|.+.
T Consensus 5 ~i-~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 5 FL-TGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EE-ESCCSSCHHHHHHHHHHH
T ss_pred EE-ECCCCChHHHHHHHHHhh
Confidence 45 999999999999999985
No 287
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.92 E-value=0.075 Score=51.05 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999985
No 288
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.88 E-value=0.13 Score=47.36 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=34.0
Q ss_pred CceeeEeeecCCCcc----------cCCcchHHHHHhcc-CcceEEeeeecCCCCCHH--HHHHHHHH
Q psy8479 588 RLRCASKNSDLPLAE----------CLKSLDLVCMKKLD-SKVNIIPIIAKADTISKS--ELQKFKVS 642 (650)
Q Consensus 588 rvh~~lyf~i~ptgh----------~l~~~Di~~mk~l~-~~vnviPvIaKaD~lt~~--e~~~~K~~ 642 (650)
.+++|+++ +.++.. ++.+.|+++++.+. ..+.+|.|+.|+|..... ++..+.+.
T Consensus 82 ~~~~v~~v-~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 148 (190)
T 2cxx_A 82 NIDVAVLV-VDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEK 148 (190)
T ss_dssp GCCEEEEE-EETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred cCCEEEEE-EcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHH
Confidence 46677777 544321 23445666666654 467899999999998853 45444443
No 289
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.84 E-value=0.084 Score=56.45 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.3
Q ss_pred ceeecCCCCCChhhHhhhhhCcC
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~~ 130 (650)
+.+ ||.+|+|||||+|.|++..
T Consensus 4 v~I-VG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGI-VGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEE-ECCSSSSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHhCCC
Confidence 345 9999999999999999874
No 290
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.83 E-value=0.087 Score=56.40 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCcHHHHHHHHHHcC
Confidence 999999999999999985
No 291
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.78 E-value=0.1 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=20.1
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.||+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 565444 999999999999999984
No 292
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.63 E-value=0.25 Score=46.00 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=43.2
Q ss_pred ccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHH
Q psy8479 533 TTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCM 612 (650)
Q Consensus 533 ~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~m 612 (650)
.....++||||||... +. .-...|+. ..|+++|+++.-....+..+.-.+.
T Consensus 60 ~~~~~~~i~Dt~G~~~------~~-~~~~~~~~----------------------~~d~ii~v~D~~~~~s~~~~~~~~~ 110 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKK------FR-GLWETYYD----------------------NIDAVIFVVDSSDHLRLCVVKSEIQ 110 (199)
T ss_dssp ETTEEEEEEEECCSGG------GG-GGGGGGCT----------------------TCSEEEEEEETTCGGGHHHHHHHHH
T ss_pred eCCEEEEEEECCCCHh------HH-HHHHHHHh----------------------cCCEEEEEEECCcHHHHHHHHHHHH
Confidence 4568899999999743 11 11111211 3678888844333333444443333
Q ss_pred HhccC-----------cceEEeeeecCCCCCHH
Q psy8479 613 KKLDS-----------KVNIIPIIAKADTISKS 634 (650)
Q Consensus 613 k~l~~-----------~vnviPvIaKaD~lt~~ 634 (650)
.-+.. .+.+|-|+.|+|.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 111 AMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 33332 77899999999998773
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.53 E-value=0.098 Score=55.48 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=19.6
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|-.+- +|.||+|||||+|+|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 443333 999999999999999985
No 294
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.32 E-value=0.13 Score=55.32 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||++.|.+-
T Consensus 35 lGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHcC
Confidence 999999999999999995
No 295
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.26 E-value=0.13 Score=54.74 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHCC
Confidence 999999999999999995
No 296
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.20 E-value=0.13 Score=54.77 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 999999999999999995
No 297
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.14 E-value=0.12 Score=55.08 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 47 lGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 999999999999999985
No 298
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.07 E-value=0.14 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=18.1
Q ss_pred CCceeecCCCCCChhhHhhhhhC
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~ 128 (650)
+|+..-+|++|+|||||+.+|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45322299999999999999865
No 299
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.93 E-value=0.14 Score=54.74 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 43 lGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 999999999999999985
No 300
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.93 E-value=0.13 Score=54.86 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 36 lGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EESTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 999999999999999995
No 301
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.87 E-value=0.15 Score=57.62 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 387 vG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp ECCTTSSTTHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999984
No 302
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.85 E-value=0.12 Score=54.28 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+|.|.+.
T Consensus 177 ~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EESTTSCHHHHHHHGGGG
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.70 E-value=0.14 Score=54.57 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 142 vG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999984
No 304
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.63 E-value=0.37 Score=43.41 Aligned_cols=54 Identities=9% Similarity=-0.045 Sum_probs=30.9
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhcc----CcceEEeeeecCCCCCHHHHHHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLD----SKVNIIPIIAKADTISKSELQKFKV 641 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~----~~vnviPvIaKaD~lt~~e~~~~K~ 641 (650)
..|+++|+++.-....+..++-.+..-+. ..+.+|-|+.|+|.....+...+.+
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 131 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN 131 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHH
Confidence 36788888443223334444433333332 4678999999999987533333333
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.59 E-value=0.12 Score=48.55 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=16.2
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.+|+|||||++.|.+
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 99999999999999975
No 306
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.57 E-value=0.14 Score=55.14 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||+++|.+-
T Consensus 53 lGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EESTTSSHHHHHHHHHTC
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 999999999999999984
No 307
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.52 E-value=0.1 Score=55.02 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=18.2
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|.||+|||||++.|.+.
T Consensus 174 ~I-vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 174 AI-LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EE-ECCTTSHHHHHHHHHHHH
T ss_pred EE-ECCCCCCHHHHHHHHHHH
Confidence 44 999999999999999985
No 308
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.48 E-value=0.15 Score=57.39 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 375 vG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999984
No 309
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.47 E-value=0.33 Score=51.92 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=50.1
Q ss_pred cccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 534 TTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 534 ~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
....+++|||||..+ +. .....++. ..++++++ +..+.....+...+.+.
T Consensus 73 ~~~~~~iiDtPGh~~------~~-~~~~~~~~----------------------~~D~~ilV-vda~~~~~~~qt~~~~~ 122 (403)
T 3sjy_A 73 FLRRISFIDAPGHEV------LM-ATMLSGAA----------------------LMDGAILV-VAANEPFPQPQTREHFV 122 (403)
T ss_dssp EEEEEEEEECCCCGG------GH-HHHHHHHT----------------------TCSEEEEE-EETTSCSSCHHHHHHHH
T ss_pred ccceEEEEECCCcHH------HH-HHHHHHHh----------------------hCCEEEEE-EECCCCCCcHHHHHHHH
Confidence 347899999999633 22 22222221 26778888 54432221333333333
Q ss_pred hcc--CcceEEeeeecCCCCCHHHHHHHHHHHHhhc
Q psy8479 614 KLD--SKVNIIPIIAKADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 614 ~l~--~~vnviPvIaKaD~lt~~e~~~~K~~i~~~l 647 (650)
.+. ....+|.|+.|+|....+++....+.|.+.+
T Consensus 123 ~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 123 ALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp HHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 322 2236899999999999988777666665543
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.42 E-value=0.12 Score=53.58 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=17.0
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||.||+|||||++.|.+.
T Consensus 108 vG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 999999999999999974
No 311
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.37 E-value=0.11 Score=64.10 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|++-
T Consensus 1111 VG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 999999999999999983
No 312
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.28 E-value=0.14 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.0
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
++-+ +|.+|+|||||+++|.+.
T Consensus 40 ~~~l-~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTF-VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEE-CCSSSSSHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHH
Confidence 4455 999999999999999875
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.23 E-value=0.18 Score=48.34 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|...
T Consensus 18 ~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999864
No 314
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.18 E-value=0.14 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+|+-+ +|.+|+|||||+++|.+.
T Consensus 50 ~g~ll-~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLL-VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEE-ECCTTSSHHHHHHHHHHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHH
Confidence 57777 999999999999999975
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.14 E-value=0.17 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.6
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+-+ +|.||+||+||++.|+..
T Consensus 4 IVi-~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVI-SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHh
Confidence 456 999999999999999865
No 316
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.97 E-value=0.13 Score=54.60 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 32 lGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECCCTHHHHHHHHHHHTS
T ss_pred ECCCCccHHHHHHHHHcC
Confidence 999999999999999985
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.84 E-value=0.14 Score=54.48 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=17.0
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 129 ~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 999999999999999874
No 318
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.84 E-value=0.15 Score=49.52 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=16.1
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|++|+|||||++.|.+
T Consensus 36 ~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 99999999999999984
No 319
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.73 E-value=0.18 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.0
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.+|+|||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 453333 999999999999999774
No 320
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.63 E-value=0.14 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=19.1
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+.+ +|.+|+|||||+++|.+.
T Consensus 38 ~~~l-~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYV-WGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEE-ESSSTTTTCHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHH
Confidence 3455 999999999999999985
No 321
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.56 E-value=0.23 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=19.7
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+. +|.+|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 563333 999999999999999986
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.52 E-value=0.18 Score=48.20 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999864
No 323
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.45 E-value=0.12 Score=54.96 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.|-
T Consensus 37 lGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECSCHHHHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 999999999999999985
No 324
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.16 E-value=0.16 Score=57.39 Aligned_cols=18 Identities=50% Similarity=0.505 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 375 vG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECSSSSSHHHHHHTTTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999985
No 325
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.90 E-value=0.21 Score=49.31 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=15.8
Q ss_pred cCCCCCChhhHhhhhh
Q psy8479 112 PCETGLGKSTLMDSLF 127 (650)
Q Consensus 112 VG~SGvGKSTlINtLf 127 (650)
+|.+|+|||||++.|.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 9999999999999999
No 326
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.78 E-value=0.18 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+|+-+ +|.+|+|||||+++|.+.
T Consensus 45 ~GvlL-~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLL-AGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEE-ESSTTSCHHHHHHHHHHH
T ss_pred CeEEE-ECCCCCcHHHHHHHHHHH
Confidence 67777 999999999999999985
No 327
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.65 E-value=0.21 Score=51.70 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||.+|+|||||++.|.+.
T Consensus 106 vG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999985
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.34 E-value=0.2 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+|+-+ +|.+|+|||||+++|.+.
T Consensus 74 ~gvll-~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLL-VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHH
T ss_pred CeEEE-ECCCcChHHHHHHHHHHH
Confidence 57777 999999999999999985
No 329
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.20 E-value=0.25 Score=55.82 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 376 vG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECCTTSSSTHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999985
No 330
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.00 E-value=0.23 Score=55.39 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+|+|.+.
T Consensus 266 ~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EESTTSSHHHHHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 331
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.80 E-value=1.3 Score=41.08 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=42.1
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch---
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--- 608 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--- 608 (650)
++..+.+++|||||..+-. ..+ ..|+. ..|+++++++.-....+..+.
T Consensus 62 ~~~~~~~~i~D~~G~~~~~---~~~----~~~~~----------------------~~d~~i~v~d~~~~~s~~~~~~~~ 112 (194)
T 2atx_A 62 GGKQYLLGLYDTAGQEDYD---RLR----PLSYP----------------------MTDVFLICFSVVNPASFQNVKEEW 112 (194)
T ss_dssp SSCEEEEEEECCCCSSSST---TTG----GGGCT----------------------TCSEEEEEEETTCHHHHHHHHHTH
T ss_pred CCEEEEEEEEECCCCcchh---HHH----HHhcC----------------------CCCEEEEEEECCCHHHHHHHHHHH
Confidence 4556889999999975410 011 11111 256788873322222333333
Q ss_pred HHHHHhccCcceEEeeeecCCCCCH
Q psy8479 609 LVCMKKLDSKVNIIPIIAKADTISK 633 (650)
Q Consensus 609 i~~mk~l~~~vnviPvIaKaD~lt~ 633 (650)
+..+++....+.+|-|+.|+|....
T Consensus 113 ~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 113 VPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCCCCCEEEEEEChhhccc
Confidence 3344444457889999999998753
No 332
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.79 E-value=0.22 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.195 Sum_probs=18.3
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.+|+||||+.+.|.+.
T Consensus 7 i~l-~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 7 IFL-VGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 445 999999999999999875
No 333
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=85.72 E-value=0.45 Score=55.57 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=51.2
Q ss_pred ccccccccccCCCCCcccccc------cccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCc
Q psy8479 533 TTTLGRGIVRSPGERKEKNAE------FFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKS 606 (650)
Q Consensus 533 ~~~l~ltivdtpGfg~~~~~~------~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~ 606 (650)
+....|++|||||++..-... .-+..-+..|+. .+.+++|++ +.. .+++..
T Consensus 147 P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---------------------~~aDlIL~V-VDA-s~~~~~ 203 (772)
T 3zvr_A 147 PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---------------------KENCLILAV-SPA-NSDLAN 203 (772)
T ss_dssp TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---------------------STTEEEEEE-EET-TSCSSS
T ss_pred CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---------------------cCCcEEEEE-EcC-CCCcch
Confidence 334589999999999843211 122122233332 234567777 533 356777
Q ss_pred chH-HHHHhccC-cceEEeeeecCCCCCHHH
Q psy8479 607 LDL-VCMKKLDS-KVNIIPIIAKADTISKSE 635 (650)
Q Consensus 607 ~Di-~~mk~l~~-~vnviPvIaKaD~lt~~e 635 (650)
.|. .+++.|.. ...+|-|+.|+|.+...+
T Consensus 204 ~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 204 SDALKIAKEVDPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp CHHHHHHHHHCTTCSSEEEEEECTTSSCTTC
T ss_pred hHHHHHHHHHHhcCCCEEEEEeCcccCCcch
Confidence 787 68888875 467899999999997654
No 334
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.72 E-value=0.3 Score=54.62 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.|.
T Consensus 53 vG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.71 E-value=0.25 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=19.4
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|--+. ||.+|+||||+++.|.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 343333 999999999999999985
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.69 E-value=0.18 Score=52.42 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.6
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||||.|.+..
T Consensus 10 ~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EESSSSSCHHHHHHHHHSC
T ss_pred EecCCCCHHHHHHHHHhhc
Confidence 9999999999999999753
No 337
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.63 E-value=0.28 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.5
Q ss_pred CCceeecCCCCCChhhHhhhhhC
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~ 128 (650)
+|++.-+|++|+|||||+.+|..
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 56322299999999999999983
No 338
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.60 E-value=0.26 Score=54.80 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||.+|+|||||++.|.+.
T Consensus 299 VGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHH
Confidence 999999999999999975
No 339
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=85.50 E-value=0.5 Score=43.78 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=28.1
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhcc----CcceEEeeeecCCCCCHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLD----SKVNIIPIIAKADTISKS 634 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~----~~vnviPvIaKaD~lt~~ 634 (650)
..|+++|+++.-....+..+.-.+.+-+. ..+.+|.|+.|+|.....
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 46889998443223334433332222222 367899999999998753
No 340
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.41 E-value=0.26 Score=55.39 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 375 vG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EECTTSSHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHhhc
Confidence 999999999999999985
No 341
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.27 E-value=0.32 Score=46.21 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=29.1
Q ss_pred ceeeEeeecCCCcccCCcchHHH---HHhccCcceEEeeeecCCCCCHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVC---MKKLDSKVNIIPIIAKADTISKSE 635 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~---mk~l~~~vnviPvIaKaD~lt~~e 635 (650)
.++++++++.-....+..++-.+ ++.....+.+|.|+.|+|.....+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 56788873433233444443333 444445788999999999976543
No 342
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.25 E-value=0.29 Score=55.01 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 373 vG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp ECSTTSSHHHHHTTTTTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 999999999999999985
No 343
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.23 E-value=0.33 Score=54.42 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 31 iGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999995
No 344
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=85.14 E-value=0.57 Score=43.20 Aligned_cols=44 Identities=16% Similarity=-0.004 Sum_probs=25.9
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhc----cCcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKL----DSKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l----~~~vnviPvIaKaD~lt 632 (650)
.|+++|+++.-....+..+.-.+..-+ .....+|-|+.|+|...
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 578888844222223433322222222 35678999999999876
No 345
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.11 E-value=0.99 Score=42.28 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=29.4
Q ss_pred ceeeEeeecCCCcc---cCCcchHHHHHh---ccCcceEEeeeecCCCCCHHHHHH
Q psy8479 589 LRCASKNSDLPLAE---CLKSLDLVCMKK---LDSKVNIIPIIAKADTISKSELQK 638 (650)
Q Consensus 589 vh~~lyf~i~ptgh---~l~~~Di~~mk~---l~~~vnviPvIaKaD~lt~~e~~~ 638 (650)
.|+++|+ +..+.. .+..+. .+++. ....+-+|-|..|+|.+..++...
T Consensus 96 ~~~~i~v-~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 149 (196)
T 3llu_A 96 TGALIYV-IDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE 149 (196)
T ss_dssp CSEEEEE-EETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH
T ss_pred CCEEEEE-EECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhH
Confidence 5788888 434432 112221 23333 356788999999999998765433
No 346
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.06 E-value=0.25 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.6
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|--+. +|++|+|||||++.|++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 443333 999999999999999985
No 347
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.02 E-value=0.29 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=19.6
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.||+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 454444 999999999999999875
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.95 E-value=0.3 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=18.9
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
-+.| +|.||+|||||++.|...
T Consensus 6 ~i~i-~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQV-VGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHh
Confidence 3456 999999999999999874
No 349
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.92 E-value=0.29 Score=54.87 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|++.
T Consensus 300 ~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.92 E-value=0.27 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=19.5
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|.-+- +|.+|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 454333 999999999999999884
No 351
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.90 E-value=1.3 Score=40.19 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=25.1
Q ss_pred ceeeEeeecCCC-cccCCcch--HHHHHhcc-CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPL-AECLKSLD--LVCMKKLD-SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~pt-gh~l~~~D--i~~mk~l~-~~vnviPvIaKaD~lt 632 (650)
.|+++|+ +..+ ...+..+. +..++.+. ..+.+|-|+.|+|...
T Consensus 84 ~d~ii~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 84 AHALLLL-YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CSEEEEE-EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCEEEEE-EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 5778888 4333 22222221 22333333 5778999999999874
No 352
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.80 E-value=0.25 Score=54.75 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+-
T Consensus 35 iG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 999999999999999984
No 353
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=84.68 E-value=0.37 Score=52.90 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+.++|||||+|.||+.
T Consensus 73 ~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 999999999999999974
No 354
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.68 E-value=0.25 Score=53.60 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|.+.
T Consensus 173 ~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999985
No 355
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.56 E-value=0.34 Score=55.42 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=15.0
Q ss_pred cCCCCCChhhHhhhhh
Q psy8479 112 PCETGLGKSTLMDSLF 127 (650)
Q Consensus 112 VG~SGvGKSTlINtLf 127 (650)
+|.||+|||||+|.|+
T Consensus 354 iGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 354 TGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ECSTTSSHHHHHTTTH
T ss_pred EeeCCCCHHHHHHHHH
Confidence 9999999999999875
No 356
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.41 E-value=0.37 Score=54.79 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|+||+|||||+|.|.+.
T Consensus 109 vGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGK 126 (608)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 999999999999999995
No 357
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=84.21 E-value=0.16 Score=54.08 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=18.1
Q ss_pred CCceeecCCCCCChhhHhhhhhC
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~ 128 (650)
+|+..-+|++|+|||||+++|..
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 56322299999999999998855
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.20 E-value=0.36 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.3
Q ss_pred CCceeecCCCCCChhhHhhhhh
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLF 127 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf 127 (650)
+|+..-+|.+|+||||++.+|+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3433229999999999999975
No 359
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.19 E-value=0.3 Score=51.18 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=30.8
Q ss_pred eeeEEEEEEcCCC-CCCCcchHHHHHHhccCCCeeeeeecccCCCHHHHHHHHHHHHHHHHH
Q psy8479 196 RIHVCLYFICPTG-HGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTS 256 (650)
Q Consensus 196 RVH~cLYfI~ps~-h~Lk~lDI~~mk~L~~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~ 256 (650)
..+++++++.++. ..++.+-... ...+++.|++|+|.............+++.+..
T Consensus 169 ~aD~vl~Vvd~~~~~~~~~l~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 169 MVDCFISLQIAGGGDDLQGIKKGL-----MEVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp TCSEEEEEECC------CCCCHHH-----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEeCCccHHHHHHHHhh-----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 3567888888752 1111111100 134789999999998765554444455544433
No 360
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.11 E-value=0.35 Score=44.71 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=16.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||+.+.|.+.
T Consensus 14 ~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHh
Confidence 999999999999999764
No 361
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.09 E-value=0.39 Score=45.57 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=22.4
Q ss_pred cCcceEEeeeecCCCCCHHHHHHHHHHHHhh
Q psy8479 616 DSKVNIIPIIAKADTISKSELQKFKVSKTRV 646 (650)
Q Consensus 616 ~~~vnviPvIaKaD~lt~~e~~~~K~~i~~~ 646 (650)
...+.+|-|+.|+|..........++.+.+.
T Consensus 113 ~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 113 KNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp TTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred ccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 3467899999999998776666666555543
No 362
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.01 E-value=0.34 Score=51.61 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||.+|+|||||++.|.+.
T Consensus 163 vG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhh
Confidence 999999999999999985
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.85 E-value=0.27 Score=47.07 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=16.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|.+.
T Consensus 28 ~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999863
No 364
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.77 E-value=0.33 Score=55.22 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.6
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.+|+|||||++.|++.
T Consensus 381 v~i-iG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVM-MGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEE-ESCTTSSHHHHHHHHHTS
T ss_pred EEE-ECCCCCcHHHHHHHHhcC
Confidence 344 999999999999999995
No 365
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=83.60 E-value=0.84 Score=50.96 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=46.8
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...++||||||+.+ +. .....|+.. ++++++. +.++ ++....++.+++.
T Consensus 81 ~~~i~liDTPG~~d------f~-~~~~~~l~~----------------------aD~allV-vDa~-~g~~~~t~~~~~~ 129 (528)
T 3tr5_A 81 DYLINLLDTPGHAD------FT-EDTYRTLTA----------------------VDSALMV-IDAA-KGVEPRTIKLMEV 129 (528)
T ss_dssp TEEEEEECCCCSTT------CC-HHHHHGGGG----------------------CSEEEEE-EETT-TCSCHHHHHHHHH
T ss_pred CEEEEEEECCCchh------HH-HHHHHHHHh----------------------CCEEEEE-EeCC-CCCCHHHHHHHHH
Confidence 46799999999866 22 222333332 5778888 5443 3577777777766
Q ss_pred cc-CcceEEeeeecCCCCCHH
Q psy8479 615 LD-SKVNIIPIIAKADTISKS 634 (650)
Q Consensus 615 l~-~~vnviPvIaKaD~lt~~ 634 (650)
+. ..+.+|.|+.|.|.....
T Consensus 130 ~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 130 CRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp HHTTTCCEEEEEECTTSCCSC
T ss_pred HHHcCCCEEEEEeCCCCcccc
Confidence 54 357889999999997543
No 366
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=83.42 E-value=0.58 Score=53.98 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=46.6
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...++||||||+.+ +. ..+..++.. ++++|++ +.++ ++....+..+++.
T Consensus 74 ~~~i~liDTPG~~d------f~-~~~~~~l~~----------------------aD~~llV-vDa~-~g~~~~~~~~~~~ 122 (693)
T 2xex_A 74 GHRVNIIDTPGHVD------FT-VEVERSLRV----------------------LDGAVTV-LDAQ-SGVEPQTETVWRQ 122 (693)
T ss_dssp TEEEEEECCCCCSS------CC-HHHHHHHHH----------------------CSEEEEE-EETT-TBSCHHHHHHHHH
T ss_pred CeeEEEEECcCCcc------hH-HHHHHHHHH----------------------CCEEEEE-ECCC-CCCcHHHHHHHHH
Confidence 36899999999976 22 233344433 5678988 5454 3566666666665
Q ss_pred cc-CcceEEeeeecCCCCCH
Q psy8479 615 LD-SKVNIIPIIAKADTISK 633 (650)
Q Consensus 615 l~-~~vnviPvIaKaD~lt~ 633 (650)
+. ..+.+|.||.|.|....
T Consensus 123 ~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 123 ATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHTTCCEEEEEECTTSTTC
T ss_pred HHHcCCCEEEEEECCCcccc
Confidence 54 36788999999999864
No 367
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.25 E-value=0.45 Score=54.10 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.|.
T Consensus 123 iG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 999999999999999985
No 368
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.18 E-value=0.66 Score=42.28 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=26.4
Q ss_pred ceeeEeeecCCCcccCCcch---HHHHHhccCcceEEeeeecCCCCCH
Q psy8479 589 LRCASKNSDLPLAECLKSLD---LVCMKKLDSKVNIIPIIAKADTISK 633 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D---i~~mk~l~~~vnviPvIaKaD~lt~ 633 (650)
.|+++++++.-....+..+. +..+++....+.+|.|+.|+|....
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 57788884422222333332 2334444457889999999997543
No 369
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.04 E-value=0.37 Score=45.99 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 29 ~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999964
No 370
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.88 E-value=0.47 Score=45.25 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=17.0
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||.+.|.+.
T Consensus 27 ~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.82 E-value=0.65 Score=41.55 Aligned_cols=44 Identities=9% Similarity=-0.059 Sum_probs=26.5
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc-----CcceEEeeeecCCCCCH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD-----SKVNIIPIIAKADTISK 633 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~-----~~vnviPvIaKaD~lt~ 633 (650)
.|+++|+++.-....+..+.- .+..+. ..+.+|-|..|+|....
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 577888844333333443332 333332 36788999999998764
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.75 E-value=0.4 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.0
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.+|+||||+.+.|.+.
T Consensus 8 i~i-~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 8 ITI-DGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEE-ECCTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 345 999999999999999764
No 373
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=82.70 E-value=0.6 Score=43.99 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=28.5
Q ss_pred ceeeEeeecCCCcccCCcchHHH---HHhccCcceEEeeeecCCCCCHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVC---MKKLDSKVNIIPIIAKADTISKSE 635 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~---mk~l~~~vnviPvIaKaD~lt~~e 635 (650)
.++++++++.-....+..++-.+ ++.....+.+|.|+.|+|.+...+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 46788773333233444443233 444445788999999999987543
No 374
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.62 E-value=0.38 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+|+-| +|.+|+|||||+++|.+.
T Consensus 46 ~~vll-~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLM-VGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHHH
T ss_pred CeEEE-ECcCCCCHHHHHHHHHHH
Confidence 56667 999999999999999875
No 375
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=82.47 E-value=1.4 Score=48.62 Aligned_cols=46 Identities=4% Similarity=-0.228 Sum_probs=32.9
Q ss_pred CceeeEeeecCCCcccCCc----chHHHHHhccCcceEEeeeecCCCCCHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKS----LDLVCMKKLDSKVNIIPIIAKADTISKSEL 636 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~----~Di~~mk~l~~~vnviPvIaKaD~lt~~e~ 636 (650)
..|++||+ +.++. .... .+..+++.+. ...+|.|+.|+|.....+.
T Consensus 312 ~aD~vl~V-vD~s~-~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 312 EADLILYL-LDLGT-ERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp SCSEEEEE-EETTT-CSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHH
T ss_pred cCCEEEEE-EECCC-CcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccch
Confidence 35788888 43432 3333 5667788777 6889999999999876654
No 376
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=82.38 E-value=0.73 Score=42.74 Aligned_cols=53 Identities=11% Similarity=-0.101 Sum_probs=28.6
Q ss_pred ceeeEeeecCCCcccCCcchHHHH---Hhcc---CcceEEeeeecCCCCCHHHHHHHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCM---KKLD---SKVNIIPIIAKADTISKSELQKFKV 641 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~m---k~l~---~~vnviPvIaKaD~lt~~e~~~~K~ 641 (650)
.|+++|+++.-....+..+.-.+. +... ..+.+|.|+.|+|.........+++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 149 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQ 149 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHH
Confidence 478888843222222333322221 2111 4678999999999976433333333
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.21 E-value=0.54 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.1
Q ss_pred CCceee-cCCCCCChhhHhhhhh
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLF 127 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf 127 (650)
+|.... +|.+|+||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 343333 9999999999999999
No 378
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=82.15 E-value=1.1 Score=50.91 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=44.8
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
++....+++|||||+.+ +. ..+..++.. ++++++.++.-. +.....+..
T Consensus 67 ~g~~~~l~liDTPGh~d------F~-~ev~~~l~~----------------------aD~aILVVDa~~--gv~~qt~~~ 115 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVD------FS-YEVSRSLAA----------------------CEGALLVVDAGQ--GVEAQTLAN 115 (599)
T ss_dssp TSCEEEEEEEECCCCGG------GH-HHHHHHHHH----------------------CSEEEEEEETTT--CCCTHHHHH
T ss_pred CCCeEEEEEEECCCchH------HH-HHHHHHHHH----------------------CCEEEEEEECCC--CCCHHHHHH
Confidence 35568999999999965 33 344445444 356788744333 344444444
Q ss_pred HH-hccCcceEEeeeecCCCCC
Q psy8479 612 MK-KLDSKVNIIPIIAKADTIS 632 (650)
Q Consensus 612 mk-~l~~~vnviPvIaKaD~lt 632 (650)
+. .+...+.+|+|+.|.|...
T Consensus 116 ~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 116 CYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp HHHHHHTTCEEEEEEECTTSTT
T ss_pred HHHHHHCCCCEEEeeeccCccc
Confidence 33 2345678999999999876
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.12 E-value=0.21 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.8
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.| +|.+|+||||+++.|...
T Consensus 3 I~i-~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAI-EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEE-EEEEEEEHHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHHH
Confidence 345 899999999999999753
No 380
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.07 E-value=0.42 Score=48.41 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|++|+|||||++.|.+.
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999999999875
No 381
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.80 E-value=0.24 Score=49.31 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=17.1
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||+++|.+.
T Consensus 33 ~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HSCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 999999999999999985
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.79 E-value=0.47 Score=45.07 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.+|+||||+.+.|.+.
T Consensus 21 I~l-~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 21 IVV-MGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp EEE-ECSTTSCHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 455 999999999999999764
No 383
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.73 E-value=0.48 Score=43.12 Aligned_cols=18 Identities=22% Similarity=-0.016 Sum_probs=16.5
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||+.+.|...
T Consensus 7 ~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 899999999999999754
No 384
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.56 E-value=0.49 Score=42.75 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.7
Q ss_pred eeecCCCCCChhhHhhhh
Q psy8479 109 AYKPCETGLGKSTLMDSL 126 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtL 126 (650)
-+ +|.+|+||||+.+.|
T Consensus 5 ~l-~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 5 LI-TGMPGSGKSEFAKLL 21 (179)
T ss_dssp EE-ECCTTSCHHHHHHHH
T ss_pred EE-ECCCCCCHHHHHHHH
Confidence 45 999999999999999
No 385
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.52 E-value=0.46 Score=49.77 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=16.5
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||++.|.+.
T Consensus 98 ~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 386
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.39 E-value=0.48 Score=53.88 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999995
No 387
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.34 E-value=0.48 Score=52.97 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|++.
T Consensus 318 ~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 388
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.27 E-value=0.41 Score=59.01 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|++-
T Consensus 422 vG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999984
No 389
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.12 E-value=0.96 Score=41.28 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=26.5
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhc-----cCcceEEeeeecCCCCCH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKL-----DSKVNIIPIIAKADTISK 633 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l-----~~~vnviPvIaKaD~lt~ 633 (650)
..|+++|+++.-....+..+.- .+..+ ...+.+|-|+.|+|....
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3688998844222323333322 22222 356789999999998653
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.01 E-value=1.1 Score=41.44 Aligned_cols=44 Identities=16% Similarity=-0.004 Sum_probs=26.1
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhc----cCcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKL----DSKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l----~~~vnviPvIaKaD~lt 632 (650)
.|+++|+++.-....+..+.-.+..-+ ...+.+|-|+.|+|...
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 678888844322333444433222222 25678999999999876
No 391
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.98 E-value=0.45 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=17.5
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|++|+|||||+..|.+.-
T Consensus 30 ~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 9999999999999999853
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=80.96 E-value=0.55 Score=42.88 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=42.5
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch---
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--- 608 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--- 608 (650)
.+..+.|++|||||... ++.-...| + ...|+++++++.-....+..+.
T Consensus 49 ~~~~~~~~i~Dt~G~~~-------~~~~~~~~--------------------~--~~~d~~i~v~d~~~~~s~~~~~~~~ 99 (186)
T 1mh1_A 49 DGKPVNLGLWDTAGQED-------YDRLRPLS--------------------Y--PQTDVSLICFSLVSPASFENVRAKW 99 (186)
T ss_dssp TTEEEEEEEECCCCSGG-------GTTTGGGG--------------------C--TTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred CCEEEEEEEEECCCCHh-------HHHHHHHh--------------------c--cCCcEEEEEEECCChhhHHHHHHHH
Confidence 35668899999999843 10010111 1 1357788884433333344443
Q ss_pred HHHHHhccCcceEEeeeecCCCCCH
Q psy8479 609 LVCMKKLDSKVNIIPIIAKADTISK 633 (650)
Q Consensus 609 i~~mk~l~~~vnviPvIaKaD~lt~ 633 (650)
+..++.....+.+|.|+.|+|....
T Consensus 100 ~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 100 YPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp HHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHHhCCCCCEEEEeEccccccc
Confidence 2334444447889999999998654
No 393
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=80.92 E-value=0.99 Score=51.28 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=44.4
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC 611 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~ 611 (650)
++....+++|||||+.+ +. ..+..++.. .+++++.++.-. +..+..+..
T Consensus 69 dg~~~~inliDTPGh~d------F~-~ev~r~l~~----------------------aD~aILVVDa~~--gv~~qt~~~ 117 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVD------FS-YEVSRALAA----------------------CEGALLLIDASQ--GIEAQTVAN 117 (600)
T ss_dssp TSCEEEEEEECCCCSGG------GH-HHHHHHHHT----------------------CSEEEEEEETTT--BCCHHHHHH
T ss_pred CCCeEEEEEEECCCcHh------HH-HHHHHHHHh----------------------CCEEEEEEECCC--CccHHHHHH
Confidence 35568999999999976 22 343444433 466888844333 344444444
Q ss_pred HH-hccCcceEEeeeecCCCCC
Q psy8479 612 MK-KLDSKVNIIPIIAKADTIS 632 (650)
Q Consensus 612 mk-~l~~~vnviPvIaKaD~lt 632 (650)
++ .+...+.+|+|+.|.|...
T Consensus 118 ~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 118 FWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp HHHHHHTTCEEEEEEECTTSTT
T ss_pred HHHHHHCCCCEEEEEeccCccc
Confidence 32 2345677999999999875
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.54 E-value=1.5 Score=41.14 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=23.5
Q ss_pred ceeeEeeecCCC-cccCCcch--HHHHHhc-cCcceEEeeeecCCCC
Q psy8479 589 LRCASKNSDLPL-AECLKSLD--LVCMKKL-DSKVNIIPIIAKADTI 631 (650)
Q Consensus 589 vh~~lyf~i~pt-gh~l~~~D--i~~mk~l-~~~vnviPvIaKaD~l 631 (650)
.|+++|+ +..+ ...+..+. +..++.. ...+.+|.|+.|+|..
T Consensus 93 ~d~ii~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 93 AMGIILV-YDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp CSEEEEE-EETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 5678887 4333 22232222 1222222 2367899999999973
No 395
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.47 E-value=0.69 Score=43.91 Aligned_cols=17 Identities=24% Similarity=-0.101 Sum_probs=16.6
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|++|+|||||++.|.+
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999998
No 396
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=80.46 E-value=0.77 Score=42.24 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=27.2
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhc-----cCcceEEeeeecCCCCCHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKL-----DSKVNIIPIIAKADTISKSEL 636 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l-----~~~vnviPvIaKaD~lt~~e~ 636 (650)
..|+++|+++.-....+..+.- .+..+ ...+.+|-|+.|+|.......
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 137 (186)
T 1ksh_A 85 STDGLIWVVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC 137 (186)
T ss_dssp TCSEEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH
T ss_pred CCCEEEEEEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH
Confidence 3578888844222323333322 22222 245788999999998765333
No 397
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.36 E-value=0.7 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.1
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+|+-| .|.+|+|||+|+++|.+.
T Consensus 45 ~~vll-~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLL-VGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCC-BCSSCSSHHHHHHHHHHH
T ss_pred ceEEE-ECCCCCcHHHHHHHHHHH
Confidence 56666 999999999999999875
No 398
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.34 E-value=0.48 Score=50.07 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=17.9
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+..
T Consensus 77 iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999973
No 399
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=80.32 E-value=1.1 Score=47.81 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...+++|||||+.+ +. .....|+. ..++++++ +.++ ++..+...+.+..
T Consensus 74 ~~~~~iiDtpG~~~------f~-~~~~~~~~----------------------~aD~~ilV-vda~-~g~~~qt~~~l~~ 122 (405)
T 2c78_A 74 KRHYSHVDCPGHAD------YI-KNMITGAA----------------------QMDGAILV-VSAA-DGPMPQTREHILL 122 (405)
T ss_dssp SCEEEEEECCCSGG------GH-HHHHHHHT----------------------TCSSEEEE-EETT-TCCCHHHHHHHHH
T ss_pred CeEEEEEECCChHH------HH-HHHHHHHH----------------------HCCEEEEE-EECC-CCCcHHHHHHHHH
Confidence 46789999999875 22 22222222 24668888 5443 3455555555544
Q ss_pred ccC-cce-EEeeeecCCCCC-HHHHHHHHHHH
Q psy8479 615 LDS-KVN-IIPIIAKADTIS-KSELQKFKVSK 643 (650)
Q Consensus 615 l~~-~vn-viPvIaKaD~lt-~~e~~~~K~~i 643 (650)
+.. .+. +|.|+.|.|... .+.+...+..+
T Consensus 123 ~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~ 154 (405)
T 2c78_A 123 ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEV 154 (405)
T ss_dssp HHHTTCCCEEEEEECGGGCCCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECccccCcHHHHHHHHHHH
Confidence 431 234 889999999985 33333333333
No 400
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=80.27 E-value=0.58 Score=57.67 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=17.3
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|++-
T Consensus 1065 vG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 999999999999999984
No 401
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.26 E-value=0.37 Score=57.74 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=17.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||++.|+|.
T Consensus 705 iGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CSCCCHHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 999999999999999995
No 402
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.07 E-value=0.57 Score=48.17 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.5
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||.+.|.+.
T Consensus 37 ~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.99 E-value=0.63 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.1
Q ss_pred CCceeecCCCCCChhhHhhhhh
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLF 127 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf 127 (650)
+|+..-+|.+|+||||++.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3433339999999999999874
No 404
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.98 E-value=0.61 Score=44.28 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=16.3
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.+|+||||+.+.|.+
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999976
No 405
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.96 E-value=0.58 Score=43.81 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.6
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|-+|+||||+.+.|...
T Consensus 4 ~i-~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 4 AI-FGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EE-ECCTTSCHHHHHHHHHHH
T ss_pred EE-ECCCccCHHHHHHHHHHh
Confidence 45 899999999999999864
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.90 E-value=0.44 Score=58.90 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
||+||+|||||++.|.+-
T Consensus 450 vG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EECSSSCHHHHHHHHTTS
T ss_pred EecCCCcHHHHHHHhccc
Confidence 999999999999999984
No 407
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=79.88 E-value=0.38 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
|+.| +|.||+||||+.+.|..+
T Consensus 146 ~vl~-~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLI-TGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHT
T ss_pred EEEE-EeCCCCCHHHHHHHHHhc
Confidence 5666 999999999999999985
No 408
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=79.81 E-value=1.3 Score=47.83 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=45.1
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCccc-------CCcc
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAEC-------LKSL 607 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~-------l~~~ 607 (650)
...++||||||..+ +. .....|+. ..++++++ +..+. + ..+.
T Consensus 83 ~~~~~iiDtpG~~~------f~-~~~~~~~~----------------------~aD~~ilV-vDa~~-gsfe~~~~~~~q 131 (435)
T 1jny_A 83 KYFFTIIDAPGHRD------FV-KNMITGAS----------------------QADAAILV-VSAKK-GEYEAGMSVEGQ 131 (435)
T ss_dssp SCEEEECCCSSSTT------HH-HHHHHTSS----------------------CCSEEEEE-EECST-THHHHHHSTTCH
T ss_pred CeEEEEEECCCcHH------HH-HHHHhhhh----------------------hcCEEEEE-EECCC-CccccccccchH
Confidence 46799999999876 22 22222221 35778888 54443 3 3333
Q ss_pred hHHHHHhcc--CcceEEeeeecCCCCC----HHHHHHHHHHHH
Q psy8479 608 DLVCMKKLD--SKVNIIPIIAKADTIS----KSELQKFKVSKT 644 (650)
Q Consensus 608 Di~~mk~l~--~~vnviPvIaKaD~lt----~~e~~~~K~~i~ 644 (650)
..+.+..+. ....+|.|+.|.|... .+.+...+..+.
T Consensus 132 t~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~ 174 (435)
T 1jny_A 132 TREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS 174 (435)
T ss_dssp HHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 444333222 2336889999999987 344444444443
No 409
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=79.69 E-value=1.9 Score=44.11 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=34.3
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhccC-cceEEeeeecCCCCC-HHHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLDS-KVNIIPIIAKADTIS-KSELQK 638 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~-~vnviPvIaKaD~lt-~~e~~~ 638 (650)
.+++++++ +..+. +.+.+..+++.|.. ..-+|-|+.|.|... ...+..
T Consensus 88 ~~D~vl~V-vd~~~--~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~ 137 (301)
T 1ega_A 88 DVELVIFV-VEGTR--WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP 137 (301)
T ss_dssp CEEEEEEE-EETTC--CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHH
T ss_pred cCCEEEEE-EeCCC--CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHH
Confidence 36888887 44443 77778777777753 567888999999998 554433
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=79.58 E-value=0.52 Score=51.41 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.8
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.||+|||||++.|.+..
T Consensus 163 vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 9999999999999999963
No 411
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=79.56 E-value=2 Score=48.08 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=37.8
Q ss_pred eEEEEEEcCCCCCCCcchHHHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTEL 254 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L 254 (650)
+.++.++.+. .|+++.=..+++.+. ..++.|++|+|.|....+ .......|++.|
T Consensus 125 DgAvlVvda~-~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~l 180 (548)
T 3vqt_A 125 DSALVVIDAA-KGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-PLDVMADIEQHL 180 (548)
T ss_dssp SEEEEEEETT-TBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-HHHHHHHHHHHH
T ss_pred CceEEEeecC-CCcccccHHHHHHHHHhCCceEEEEecccchhcc-hhHhhhhhhhhc
Confidence 3466666654 678887777787776 478999999999986543 334444455444
No 412
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.53 E-value=0.58 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.5
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+-+ +|.+|+|||||++.|...
T Consensus 45 ~~ll-~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVL-IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHH
T ss_pred ceEE-ECCCCCCHHHHHHHHHHH
Confidence 3444 999999999999999875
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.51 E-value=0.48 Score=44.92 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=17.2
Q ss_pred eeecCCCCCChhhHhhhhhC
Q psy8479 109 AYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~ 128 (650)
.+ +|.+|+|||||.+.|.+
T Consensus 5 ~i-~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 5 GL-TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EE-EECTTSSHHHHHHHHHH
T ss_pred EE-ECCCCcCHHHHHHHHHH
Confidence 44 89999999999999987
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.47 E-value=0.58 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+-| +|.+|+|||||++.|.+.
T Consensus 54 ~ll-~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 54 VLL-AGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp EEE-ESSTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCcHHHHHHHHHHH
Confidence 445 999999999999999985
No 415
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=79.42 E-value=1.5 Score=39.03 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=28.6
Q ss_pred ceeeEeeecCCCc-ccCCcch--HHHHHhccCcceEEeeeecCCCCC-----HHHHHHHHH
Q psy8479 589 LRCASKNSDLPLA-ECLKSLD--LVCMKKLDSKVNIIPIIAKADTIS-----KSELQKFKV 641 (650)
Q Consensus 589 vh~~lyf~i~ptg-h~l~~~D--i~~mk~l~~~vnviPvIaKaD~lt-----~~e~~~~K~ 641 (650)
.|+++++ +..+. ..+..+. +..++.......+|.|+.|+|... .+++..+.+
T Consensus 78 ~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 78 AQACVLV-FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp CCEEEEE-EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred CCEEEEE-EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 5677777 43332 2232222 222333335788999999999764 455544433
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=79.22 E-value=1.4 Score=40.27 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=24.6
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc-----CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD-----SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~-----~~vnviPvIaKaD~lt 632 (650)
.|+++++++.-....+..+. .++..+. ....+|-|+.|+|...
T Consensus 94 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 94 AMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 57788884322222222221 2333332 5778999999999754
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=79.12 E-value=1.9 Score=39.70 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=17.3
Q ss_pred cceEEeeeecCCCC----CHHHHHHHHH
Q psy8479 618 KVNIIPIIAKADTI----SKSELQKFKV 641 (650)
Q Consensus 618 ~vnviPvIaKaD~l----t~~e~~~~K~ 641 (650)
.+.+|-|+.|+|.. +.+++..+.+
T Consensus 126 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 153 (190)
T 3con_A 126 DVPMVLVGNKCDLPTRTVDTKQAHELAK 153 (190)
T ss_dssp CCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred CCeEEEEEECCcCCcccCCHHHHHHHHH
Confidence 67899999999976 4455555543
No 418
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.11 E-value=0.65 Score=42.53 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=17.2
Q ss_pred eeecCCCCCChhhHhhhhhC
Q psy8479 109 AYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~ 128 (650)
-+ +|.+|+||||+.+.|..
T Consensus 6 ~i-~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 6 LT-IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EE-ECCTTSSHHHHHHHHHH
T ss_pred EE-ecCCCCCHHHHHHHHHh
Confidence 34 99999999999999986
No 419
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=79.02 E-value=2.5 Score=38.11 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=24.3
Q ss_pred ceeeEeeecCCCcccCCcch--HHHHHhccCcceEEeeeecCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLD--LVCMKKLDSKVNIIPIIAKADTI 631 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D--i~~mk~l~~~vnviPvIaKaD~l 631 (650)
.|+++|+++.-....+..+. +..+++....+.+|-|+.|+|..
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 46777773322222332222 22334444567889999999964
No 420
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=78.93 E-value=2.1 Score=46.16 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=44.4
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...+++|||||..+ +. ..+..|+. ..++++++ +..+ .+..+...+.+..
T Consensus 103 ~~~~~iiDtpGh~~------f~-~~~~~~~~----------------------~aD~~ilV-vDa~-~g~~~qt~~~l~~ 151 (434)
T 1zun_B 103 KRKFIIADTPGHEQ------YT-RNMATGAS----------------------TCDLAIIL-VDAR-YGVQTQTRRHSYI 151 (434)
T ss_dssp SEEEEEEECCCSGG------GH-HHHHHHHT----------------------TCSEEEEE-EETT-TCSCHHHHHHHHH
T ss_pred CceEEEEECCChHH------HH-HHHHHHHh----------------------hCCEEEEE-EECC-CCCcHHHHHHHHH
Confidence 35799999999754 22 22222222 35778888 4343 2344444444332
Q ss_pred cc--CcceEEeeeecCCCCC--HHHHHHHHHHHH
Q psy8479 615 LD--SKVNIIPIIAKADTIS--KSELQKFKVSKT 644 (650)
Q Consensus 615 l~--~~vnviPvIaKaD~lt--~~e~~~~K~~i~ 644 (650)
+. ..-.+|.|+.|+|... .+.+...+..+.
T Consensus 152 ~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 152 ASLLGIKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp HHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 22 2236899999999986 343434444433
No 421
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=78.71 E-value=1.3 Score=52.28 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=45.1
Q ss_pred ccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHH
Q psy8479 533 TTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCM 612 (650)
Q Consensus 533 ~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~m 612 (650)
+....++||||||..+ +. ..+..|+.. .++++++++ .+ .+....+..++
T Consensus 95 ~~~~~i~liDTPG~~d------f~-~~~~~~l~~----------------------aD~ailVvD-a~-~g~~~qt~~~~ 143 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVD------FS-SEVTAALRV----------------------TDGALVVVD-TI-EGVCVQTETVL 143 (842)
T ss_dssp SSEEEEEEECCCCCCS------SC-HHHHHHHHT----------------------CSEEEEEEE-TT-TBSCHHHHHHH
T ss_pred CCCceEEEEECcCchh------hH-HHHHHHHHh----------------------CCEEEEEEe-CC-CCCCHHHHHHH
Confidence 4467899999999977 32 344455543 567888844 33 24455555555
Q ss_pred Hh-ccCcceEEeeeecCCCC
Q psy8479 613 KK-LDSKVNIIPIIAKADTI 631 (650)
Q Consensus 613 k~-l~~~vnviPvIaKaD~l 631 (650)
+. +...+-+|.|+.|.|..
T Consensus 144 ~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 144 RQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHcCCCeEEEEECCCcc
Confidence 44 34567789999999976
No 422
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.63 E-value=0.68 Score=42.84 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=16.1
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.+|+||||+.+.|..
T Consensus 9 ~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999976
No 423
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=78.55 E-value=1.9 Score=48.01 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.6
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHh
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKK 614 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~ 614 (650)
...++||||||..+ +. ..+..|+.. ++++++. +.++ .++.+....+++.
T Consensus 81 ~~~i~liDTPG~~d------f~-~~~~~~l~~----------------------aD~~IlV-vDa~-~g~~~~t~~~~~~ 129 (529)
T 2h5e_A 81 DCLVNLLDTPGHED------FS-EDTYRTLTA----------------------VDCCLMV-IDAA-KGVEDRTRKLMEV 129 (529)
T ss_dssp TEEEEEECCCCSTT------CC-HHHHHGGGG----------------------CSEEEEE-EETT-TCSCHHHHHHHHH
T ss_pred CeEEEEEECCCChh------HH-HHHHHHHHH----------------------CCEEEEE-EeCC-ccchHHHHHHHHH
Confidence 46899999999965 22 233333332 5778988 5443 3456666666665
Q ss_pred cc-CcceEEeeeecCCCCCHH
Q psy8479 615 LD-SKVNIIPIIAKADTISKS 634 (650)
Q Consensus 615 l~-~~vnviPvIaKaD~lt~~ 634 (650)
+. ..+.+|.|+.|.|.....
T Consensus 130 ~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 130 TRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp HTTTTCCEEEEEECTTSCCSC
T ss_pred HHHcCCCEEEEEcCcCCcccc
Confidence 54 356789999999998643
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=78.51 E-value=1.3 Score=41.04 Aligned_cols=54 Identities=9% Similarity=-0.068 Sum_probs=30.7
Q ss_pred ceeeEeeecCCCcccCCcc---hHHHHHhccCcceEEeeeecCCCC-------CHHHHHHHHHH
Q psy8479 589 LRCASKNSDLPLAECLKSL---DLVCMKKLDSKVNIIPIIAKADTI-------SKSELQKFKVS 642 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~---Di~~mk~l~~~vnviPvIaKaD~l-------t~~e~~~~K~~ 642 (650)
.|+++++++.-....+..+ =+..+++....+-+|-|+.|+|.. +.++...+.+.
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK 158 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh
Confidence 4677777332222233222 122344555568899999999985 45555555443
No 425
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.47 E-value=1.3 Score=41.82 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=42.1
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch---
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--- 608 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--- 608 (650)
++..+.+++|||||... +. .-...|+. ..++++++++.-....+..+.
T Consensus 74 ~~~~~~l~i~Dt~G~~~------~~-~~~~~~~~----------------------~~d~~i~v~d~~~~~s~~~~~~~~ 124 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLED------YD-RLRPLSYP----------------------QTDVFLICFSLVSPASFENVRAKW 124 (204)
T ss_dssp C-CEEEEEEEEECCSGG------GT-TTGGGGCT----------------------TCSEEEEEEETTCHHHHHHHHHTH
T ss_pred CCEEEEEEEEECCCchh------hH-HHHHHHhc----------------------cCCEEEEEEECCCHHHHHHHHHHH
Confidence 45678899999999732 11 11111211 257788874433333333332
Q ss_pred HHHHHhccCcceEEeeeecCCCCCHH
Q psy8479 609 LVCMKKLDSKVNIIPIIAKADTISKS 634 (650)
Q Consensus 609 i~~mk~l~~~vnviPvIaKaD~lt~~ 634 (650)
+..++.....+-+|-|+.|+|.....
T Consensus 125 ~~~~~~~~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 125 YPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HHHHHHHCSSCCEEEEEECHHHHTCH
T ss_pred HHHHHHhCCCCCEEEEEechhhccch
Confidence 23444444578899999999986544
No 426
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=78.43 E-value=1.9 Score=39.87 Aligned_cols=42 Identities=10% Similarity=-0.037 Sum_probs=24.0
Q ss_pred ceeeEeeecCCCc-ccCCcchHHHHHhcc----CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLA-ECLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptg-h~l~~~Di~~mk~l~----~~vnviPvIaKaD~lt 632 (650)
.++++++ +..+. ..+..+. .++..+. ....+|-|+.|+|...
T Consensus 95 ~d~ii~v-~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 95 AMGFLLM-YDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp CSEEEEE-EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CCEEEEE-EECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 5678887 43432 2222221 2233332 4678999999999865
No 427
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=78.24 E-value=1.7 Score=47.71 Aligned_cols=45 Identities=11% Similarity=0.004 Sum_probs=33.2
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhccCcceEEeeeecCCCCCHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSE 635 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~~vnviPvIaKaD~lt~~e 635 (650)
..|++||+ +.++ +++...+.++++.+.. ..+|-|+.|+|.....+
T Consensus 303 ~aD~vl~V-vD~s-~~~~~~~~~i~~~l~~-~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 303 TADLVLLT-IDAA-TGWTTGDQEIYEQVKH-RPLILVMNKIDLVEKQL 347 (462)
T ss_dssp SCSEEEEE-EETT-TCSCHHHHHHHHHHTT-SCEEEEEECTTSSCGGG
T ss_pred cCCEEEEE-eccC-CCCCHHHHHHHHhccC-CcEEEEEECCCCCcchh
Confidence 36788888 4443 3566777788888876 58999999999876543
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.19 E-value=0.74 Score=48.73 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=15.4
Q ss_pred cCCCCCChhhHhhhhh
Q psy8479 112 PCETGLGKSTLMDSLF 127 (650)
Q Consensus 112 VG~SGvGKSTlINtLf 127 (650)
+|.+|+||||++++|+
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 9999999999999976
No 429
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=78.17 E-value=2 Score=45.54 Aligned_cols=79 Identities=13% Similarity=0.017 Sum_probs=45.4
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHHhc
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMKKL 615 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk~l 615 (650)
..+++|||||+-+ +. ..+..++.. .+++++. +. ..+..+...+.+..+
T Consensus 60 ~~i~iiDtPGh~~------f~-~~~~~~~~~----------------------aD~ailV-vd--~~g~~~qt~e~~~~~ 107 (370)
T 2elf_A 60 RNMVFVDAHSYPK------TL-KSLITALNI----------------------SDIAVLC-IP--PQGLDAHTGECIIAL 107 (370)
T ss_dssp SEEEEEECTTTTT------CH-HHHHHHHHT----------------------CSEEEEE-EC--TTCCCHHHHHHHHHH
T ss_pred eEEEEEECCChHH------HH-HHHHHHHHH----------------------CCEEEEE-Ec--CCCCcHHHHHHHHHH
Confidence 4699999999865 33 233333322 4678888 54 345554444443322
Q ss_pred c--CcceEEeeee-cCCCCCHHHHHHHHHHHHhhc
Q psy8479 616 D--SKVNIIPIIA-KADTISKSELQKFKVSKTRVL 647 (650)
Q Consensus 616 ~--~~vnviPvIa-KaD~lt~~e~~~~K~~i~~~l 647 (650)
. ..-.+|.|+. |.|. ..+.+...+..+.+-+
T Consensus 108 ~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l 141 (370)
T 2elf_A 108 DLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT 141 (370)
T ss_dssp HHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT
T ss_pred HHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH
Confidence 1 2223488999 9999 7665555455554433
No 430
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=77.90 E-value=1.2 Score=48.28 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=33.2
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhccC-cceEEeeeecCCCCCHHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSEL 636 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~~-~vnviPvIaKaD~lt~~e~ 636 (650)
+.+++||+ +.. +..+.+..+++.+.. ...+|.|+.|+|.......
T Consensus 113 ~aD~vllV-vD~---~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 113 RADCGILV-TDS---APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp SCSEEEEE-CSS---SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT
T ss_pred cCCEEEEE-EeC---CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH
Confidence 46889998 433 566777777776653 5789999999998876543
No 431
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=77.89 E-value=1.2 Score=41.37 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=21.8
Q ss_pred ceeeEeeecCCCc-ccCCcchHHHHHhcc-------CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLA-ECLKSLDLVCMKKLD-------SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptg-h~l~~~Di~~mk~l~-------~~vnviPvIaKaD~lt 632 (650)
.|+++++ +..+. ..+..+. .++..+. ..+.+|-|+.|+|...
T Consensus 97 ~d~~i~v-~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILV-FDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEE-EETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEE-EECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 5778888 43332 2222222 3333332 4678899999999876
No 432
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.48 E-value=0.72 Score=42.48 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|-||+||||+.+.|...
T Consensus 9 ~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999874
No 433
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=77.37 E-value=1 Score=42.11 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCceee-cCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYK-PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~Fn-VG~SGvGKSTlINtLf~~ 129 (650)
+|..+. +|.+|+||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 343333 999999999999999864
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=77.26 E-value=1.3 Score=42.15 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=29.0
Q ss_pred CceeeEeeecCCCcccCCcch---HHHHHhccCcceEEeeeecCCCCCHHH
Q psy8479 588 RLRCASKNSDLPLAECLKSLD---LVCMKKLDSKVNIIPIIAKADTISKSE 635 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~D---i~~mk~l~~~vnviPvIaKaD~lt~~e 635 (650)
..|+++++++.-....+..+. +..++.....+.+|.|+.|+|......
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 367888884422222333222 233444456788999999999876543
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=77.05 E-value=1.1 Score=43.92 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCCCCCcchHHH-----HHHh-ccCCCeeeeeecccCCCHHHHHHHH
Q psy8479 198 HVCLYFICPTGHGLKSLDLVC-----MKKL-DSKVNIIPIIAKADTISKSELQKFK 247 (650)
Q Consensus 198 H~cLYfI~ps~h~Lk~lDI~~-----mk~L-~~~vnvIPVItKAD~Lt~~El~~~K 247 (650)
++++|.+.++ ......+... +..+ ....+++.|++|+|..+..+....+
T Consensus 139 ~~iv~vvD~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~ 193 (262)
T 1yrb_A 139 PLVVYISDPE-ILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 193 (262)
T ss_dssp CEEEEEECGG-GCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHH
T ss_pred ceEEeccchh-hhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHH
Confidence 6788877653 2334444321 1112 2367999999999999876544333
No 436
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.00 E-value=0.93 Score=43.04 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.0
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.+ +|.+|+||||+.+.|.+.
T Consensus 28 i~l-~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 28 IFL-TGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHH
T ss_pred EEE-EcCCCCCHHHHHHHHHHH
Confidence 344 999999999999999864
No 437
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=76.98 E-value=1.1 Score=49.23 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=34.1
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc-CcceEEeeeecCCCCCHHHHHHHHHHHHh
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKVSKTR 645 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~-~~vnviPvIaKaD~lt~~e~~~~K~~i~~ 645 (650)
.++++++ +..+ .++.+...+.+..+. ..+.+|.|+.|+|....+.+...++.+.+
T Consensus 97 aD~~ilV-vda~-~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~ 152 (482)
T 1wb1_A 97 IDLALIV-VDAK-EGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS 152 (482)
T ss_dssp CCEEEEE-EETT-TCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH
T ss_pred CCEEEEE-EecC-CCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHH
Confidence 5778888 5443 345454444433222 23455889999999987776666665554
No 438
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=76.81 E-value=1.4 Score=47.04 Aligned_cols=56 Identities=13% Similarity=-0.042 Sum_probs=32.2
Q ss_pred CceeeEeeecCCCcccC-CcchHHHHHhcc--CcceEEeeeecCCCCCHHHHHHHHHHHHh
Q psy8479 588 RLRCASKNSDLPLAECL-KSLDLVCMKKLD--SKVNIIPIIAKADTISKSELQKFKVSKTR 645 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l-~~~Di~~mk~l~--~~vnviPvIaKaD~lt~~e~~~~K~~i~~ 645 (650)
..++++++ +..+. +. .+...+.+..+. ....+|.|+.|.|.....++......|.+
T Consensus 106 ~~D~~ilV-vda~~-g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 106 LMDGAILV-IAANE-PCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp GCSEEEEE-EETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred hCCEEEEE-EECCC-CCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 35778888 54442 22 333443333222 23468899999999998765443334433
No 439
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=76.80 E-value=0.73 Score=42.61 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.5
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ +|-+|+||||+.+.|...
T Consensus 5 ~i-~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 5 IV-TGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EE-EECTTSCHHHHHHHHHHH
T ss_pred EE-ECCCCCCHHHHHHHHHHH
Confidence 45 899999999999999764
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.58 E-value=0.65 Score=47.86 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=17.8
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.| +|.+|+||||++..|.+.
T Consensus 109 ~l-vG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 109 VL-FGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EE-EESTTSSHHHHHHHHHHH
T ss_pred EE-ECCCCCCHHHHHHHHHHH
Confidence 45 999999999999999864
No 441
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.54 E-value=0.61 Score=55.87 Aligned_cols=19 Identities=42% Similarity=0.475 Sum_probs=17.2
Q ss_pred cCCCCCChhhHhhhhhCcC
Q psy8479 112 PCETGLGKSTLMDSLFNTS 130 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~~ 130 (650)
+|.+|+|||||++.|.+-.
T Consensus 467 iGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp ECSTTSSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999543
No 442
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.37 E-value=0.99 Score=41.86 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=16.6
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||+.+.|.+.
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999764
No 443
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=76.32 E-value=2.2 Score=39.73 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=40.5
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch---
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--- 608 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--- 608 (650)
++..+.|.+|||||...- ...+ ..|+. ..|+++++++.-....+..+.
T Consensus 64 ~~~~~~~~i~Dt~G~~~~---~~~~----~~~~~----------------------~~~~~i~v~d~~~~~s~~~~~~~~ 114 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEF---DKLR----PLCYT----------------------NTDIFLLCFSVVSPSSFQNVSEKW 114 (201)
T ss_dssp TTEEEEEEEEECCCSTTC---SSSG----GGGGT----------------------TCSEEEEEEETTCHHHHHHHHHTH
T ss_pred CCEEEEEEEEECCCCHHH---HHHh----HhhcC----------------------CCcEEEEEEECCCHHHHHHHHHHH
Confidence 455688999999998431 0011 11111 257788883322222233221
Q ss_pred HHHHHhccCcceEEeeeecCCCCC
Q psy8479 609 LVCMKKLDSKVNIIPIIAKADTIS 632 (650)
Q Consensus 609 i~~mk~l~~~vnviPvIaKaD~lt 632 (650)
+..++.....+.+|.|..|+|...
T Consensus 115 ~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 115 VPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp HHHHHHHCSSSCEEEEEECGGGGG
T ss_pred HHHHHHhCCCCCEEEEEECHhhhh
Confidence 122444445788999999999864
No 444
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.23 E-value=0.78 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.8
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
++-+ .|.+|+|||||+.+|.+.
T Consensus 56 ~~~l-~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 56 GLYL-HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred eEEE-ECCCCCCHHHHHHHHHHH
Confidence 4445 999999999999999875
No 445
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.93 E-value=4.3 Score=36.07 Aligned_cols=53 Identities=6% Similarity=0.063 Sum_probs=28.1
Q ss_pred ceeeEeeecCCCcccCCcch--HHHHHhc-cCcceEEeeeecCCCC----CHHHHHHHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLD--LVCMKKL-DSKVNIIPIIAKADTI----SKSELQKFKV 641 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D--i~~mk~l-~~~vnviPvIaKaD~l----t~~e~~~~K~ 641 (650)
.|+++|+++.-....+..+. +..++.. ...+.+|-|+.|+|.. +.++...+.+
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH
Confidence 57788883322222222221 1222222 3567899999999973 3455544443
No 446
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=75.85 E-value=1.3 Score=45.39 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred ceeeEeeecCCCcccCCcch-----HHHHHhccCcceEEeeeecCCCCCHHHHH
Q psy8479 589 LRCASKNSDLPLAECLKSLD-----LVCMKKLDSKVNIIPIIAKADTISKSELQ 637 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D-----i~~mk~l~~~vnviPvIaKaD~lt~~e~~ 637 (650)
.++++|+++.-....+..+. +..++.....+.+|-|+.|+|....++..
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~ 134 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE 134 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence 57888884432222233222 22233345678999999999999866554
No 447
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=75.83 E-value=1.7 Score=39.29 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.3
Q ss_pred CcceEEeeeecCCCCC
Q psy8479 617 SKVNIIPIIAKADTIS 632 (650)
Q Consensus 617 ~~vnviPvIaKaD~lt 632 (650)
..+.+|.|+.|+|...
T Consensus 113 ~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 113 DDFPVVLVGNKADLES 128 (181)
T ss_dssp SCCCEEEEEECGGGGG
T ss_pred CCCCEEEEEECccccc
Confidence 4678999999999764
No 448
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=75.65 E-value=0.83 Score=42.46 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.5
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|-+|+||||+.+.|...
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATG 28 (193)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999753
No 449
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=75.39 E-value=1.2 Score=50.52 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=41.7
Q ss_pred cccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcc---cC--CcchHH
Q psy8479 536 LGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAE---CL--KSLDLV 610 (650)
Q Consensus 536 l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh---~l--~~~Di~ 610 (650)
..++||||||+.+ +. ..+..++. ..+++|++++.-.|. ++ .+...+
T Consensus 255 ~~i~iiDTPGh~~------f~-~~~~~~~~----------------------~aD~alLVVDa~~g~~e~gi~~~~qt~e 305 (592)
T 3mca_A 255 KIYEIGDAPGHRD------FI-SGMIAGAS----------------------SADFAVLVVDSSQNNFERGFLENGQTRE 305 (592)
T ss_dssp ----CCEEESSSE------EE-EECCC-----------------------------CCSEEEEEECCSSTTSCSCSSHHH
T ss_pred eEEEEEECCChHH------HH-HHHHHHHh----------------------hCCEEEEEEECCCCccccccccchHHHH
Confidence 5789999999875 22 12111111 256677773322221 34 555555
Q ss_pred HHHhcc--CcceEEeeeecCCCCC--HHHHHHHHHHHHhhc
Q psy8479 611 CMKKLD--SKVNIIPIIAKADTIS--KSELQKFKVSKTRVL 647 (650)
Q Consensus 611 ~mk~l~--~~vnviPvIaKaD~lt--~~e~~~~K~~i~~~l 647 (650)
.+..+. ..-++|.|+.|.|... .+.+...++.+...+
T Consensus 306 ~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 306 HAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp HHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHH
Confidence 443332 2335899999999876 555666666665543
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.36 E-value=0.76 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.2
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+-| +|.+|+|||||++.|.+.
T Consensus 39 ~ll-~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLL-YGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEE-ECSTTSSHHHHHHTHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 445 999999999999999873
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=75.35 E-value=2.4 Score=37.81 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=24.1
Q ss_pred CceeeEeeecCCCc-ccCCcchHHHHHhc----cCcceEEeeeecCCCCC
Q psy8479 588 RLRCASKNSDLPLA-ECLKSLDLVCMKKL----DSKVNIIPIIAKADTIS 632 (650)
Q Consensus 588 rvh~~lyf~i~ptg-h~l~~~Di~~mk~l----~~~vnviPvIaKaD~lt 632 (650)
..|+++++ +..+. ..+..+. .++..+ ...+.+|.|+.|+|...
T Consensus 78 ~~d~~i~v-~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 78 DSNGAILV-YDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp TCSEEEEE-EETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred cCCEEEEE-EECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccc
Confidence 35778887 43332 2222222 122222 35678899999999854
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=75.26 E-value=1.3 Score=41.46 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=37.4
Q ss_pred cccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHHH
Q psy8479 534 TTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCMK 613 (650)
Q Consensus 534 ~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~mk 613 (650)
....+++|||||... ++.-...|+. ..++++|+++.-....+..+.- ++.
T Consensus 71 ~~~~~~i~Dt~G~~~-------~~~~~~~~~~----------------------~~d~iilv~D~~~~~s~~~~~~-~l~ 120 (192)
T 2b6h_A 71 KNICFTVWDVGGQDK-------IRPLWRHYFQ----------------------NTQGLIFVVDSNDRERVQESAD-ELQ 120 (192)
T ss_dssp TTEEEEEEECC------------CTTHHHHHH----------------------TCCEEEEEEETTCGGGHHHHHH-HHH
T ss_pred CCEEEEEEECCCCHh-------HHHHHHHHhc----------------------cCCEEEEEEECCCHHHHHHHHH-HHH
Confidence 347899999999854 1111112222 2567888844333333444332 333
Q ss_pred hc-c----CcceEEeeeecCCCCCH
Q psy8479 614 KL-D----SKVNIIPIIAKADTISK 633 (650)
Q Consensus 614 ~l-~----~~vnviPvIaKaD~lt~ 633 (650)
.+ . ..+.+|-|+.|+|....
T Consensus 121 ~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 121 KMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHhcccccCCCeEEEEEECCCCCCC
Confidence 32 2 36788999999998764
No 453
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=75.26 E-value=2.2 Score=49.19 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.6
Q ss_pred ccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHHH
Q psy8479 533 TTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVCM 612 (650)
Q Consensus 533 ~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~m 612 (650)
+....++||||||..+ +. ..+..++.. .+++++. +.++ .+........+
T Consensus 79 ~~~~~i~liDTPG~~d------f~-~~~~~~l~~----------------------aD~aIlV-vDa~-~gv~~qt~~~~ 127 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVD------FT-IEVERSMRV----------------------LDGAVMV-YCAV-GGVQPQSETVW 127 (704)
T ss_pred CCceeEEEEeCCCccc------hH-HHHHHHHHH----------------------CCEEEEE-EeCC-CCCcHHHHHHH
Confidence 4458899999999976 22 333334333 4678888 5554 24555555555
Q ss_pred Hhc-cCcceEEeeeecCCCCCH
Q psy8479 613 KKL-DSKVNIIPIIAKADTISK 633 (650)
Q Consensus 613 k~l-~~~vnviPvIaKaD~lt~ 633 (650)
+.+ ...+.+|.||.|.|....
T Consensus 128 ~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 128 RQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHcCCCEEEEEeCCCcccc
Confidence 544 246778999999998764
No 454
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=75.13 E-value=3.2 Score=37.94 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=22.7
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc--CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD--SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~--~~vnviPvIaKaD~lt 632 (650)
.|+++|+++.-.+..+..+. .++..+. ....+|-|+.|+| +.
T Consensus 117 ~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~piilv~NK~D-~~ 160 (208)
T 3clv_A 117 ATCAIVVFDISNSNTLDRAK-TWVNQLKISSNYIIILVANKID-KN 160 (208)
T ss_dssp CSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCCEEEEEEECTT-CC
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHhhCCCcEEEEEECCC-cc
Confidence 46788884422222233222 2233332 1278899999999 53
No 455
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=75.06 E-value=3.3 Score=37.23 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=12.8
Q ss_pred CcceEEeeeecCCCC
Q psy8479 617 SKVNIIPIIAKADTI 631 (650)
Q Consensus 617 ~~vnviPvIaKaD~l 631 (650)
..+.+|-|+.|+|..
T Consensus 115 ~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 115 ESFPFVILGNKIDIS 129 (177)
T ss_dssp TTSCEEEEEECTTCS
T ss_pred CCCcEEEEEECCccc
Confidence 567899999999975
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=74.98 E-value=2.7 Score=38.49 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=22.8
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc-----CcceEEeeeecCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD-----SKVNIIPIIAKADTI 631 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~-----~~vnviPvIaKaD~l 631 (650)
.|+++|+++.-....+..+. .++..+. ..+.+|-|+.|+|..
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 56788883322222222222 2333333 356778899999973
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=74.97 E-value=0.81 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.7
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+.+ +|.+|+|||||++.|.+.
T Consensus 171 ~i~l-~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLF-KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHhh
Confidence 3445 999999999999999974
No 458
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=74.55 E-value=2.6 Score=46.19 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=44.2
Q ss_pred cccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCccc-----CCcch
Q psy8479 534 TTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAEC-----LKSLD 608 (650)
Q Consensus 534 ~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~-----l~~~D 608 (650)
....++||||||+.+ +. .....|+.. .+++|++++.-.|.. +.+..
T Consensus 109 ~~~~~~iiDTPG~~~------f~-~~~~~~~~~----------------------aD~~llVvDa~~g~~~~~~~~~~qt 159 (483)
T 3p26_A 109 HRANFTIVDAPGHRD------FV-PNAIMGISQ----------------------ADMAILCVDCSTNAFESGFDLDGQT 159 (483)
T ss_dssp SSCEEEEECCCCCGG------GH-HHHHHHHTT----------------------CSEEEEEEECCC------CCCCHHH
T ss_pred CCceEEEEECCCcHH------HH-HHHHHhhhh----------------------CCEEEEEEECCCCccccccchhhhH
Confidence 346899999999954 22 222233222 577888844322211 23333
Q ss_pred HHHHHhc--cCcceEEeeeecCCCCC--HHHHHHHHHHHH
Q psy8479 609 LVCMKKL--DSKVNIIPIIAKADTIS--KSELQKFKVSKT 644 (650)
Q Consensus 609 i~~mk~l--~~~vnviPvIaKaD~lt--~~e~~~~K~~i~ 644 (650)
.+.+..+ .....+|.|+.|.|... .......+..+.
T Consensus 160 ~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 199 (483)
T 3p26_A 160 KEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLL 199 (483)
T ss_dssp HHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHH
Confidence 3333222 22346899999999887 333444444443
No 459
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.50 E-value=0.94 Score=46.26 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=16.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||.+.|...
T Consensus 39 ~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp ECCTTSCTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999864
No 460
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.37 E-value=0.91 Score=50.50 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=28.6
Q ss_pred eeEEEEEEcCCCCCCCcchHHHHHHhccCCCe-eeeeecccCCCH
Q psy8479 197 IHVCLYFICPTGHGLKSLDLVCMKKLDSKVNI-IPIIAKADTISK 240 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI~~mk~L~~~vnv-IPVItKAD~Lt~ 240 (650)
.|.++|.+.++. +.. ++...+.+...+++ +.|+||.|..+.
T Consensus 214 pd~vllVvDa~~-g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 214 PDNIVYVMDASI-GQA--CEAQAKAFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp CSEEEEEEETTC-CTT--HHHHHHHHHHHHCCCCEEEECTTSCCC
T ss_pred CceEEEEEeccc-ccc--HHHHHHHHHhhcCceEEEEeCCccccc
Confidence 467788887653 433 55666777665775 899999998754
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=74.21 E-value=1 Score=41.80 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=25.5
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhc-----cCcceEEeeeecCCCCCH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKL-----DSKVNIIPIIAKADTISK 633 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l-----~~~vnviPvIaKaD~lt~ 633 (650)
.|+++|+++.-....+..+.- .+..+ ...+.+|-|+.|+|....
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 467888844222333443332 22222 256778999999998754
No 462
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=74.07 E-value=2.2 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=16.4
Q ss_pred cceEEeeeecCCCCC----HHHHHHHH
Q psy8479 618 KVNIIPIIAKADTIS----KSELQKFK 640 (650)
Q Consensus 618 ~vnviPvIaKaD~lt----~~e~~~~K 640 (650)
.+.++-|+.|+|... .++...+.
T Consensus 108 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 134 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAARTVESRQAQDLA 134 (166)
T ss_dssp CCCEEEEEECTTCSCCCSCHHHHHHHH
T ss_pred CCcEEEEEEchhhhhcccCHHHHHHHH
Confidence 678899999999775 44444443
No 463
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=73.97 E-value=1.1 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.5
Q ss_pred CCceeecCCCCCChhhHhhhhhC
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFN 128 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~ 128 (650)
+|+.+-+|.+|+|||||+++|..
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 56322299999999999999985
No 464
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.89 E-value=1.1 Score=41.50 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=16.1
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.+|+||||+.+.|..
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999975
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=73.87 E-value=3.7 Score=37.00 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=29.7
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhcc-CcceEEeeeecCCCCCH
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 633 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l~-~~vnviPvIaKaD~lt~ 633 (650)
.|+++|+ +..+ ++..+.+++.++.+. ..+.+|-|+.|+|....
T Consensus 79 ~d~~i~v-~d~~-~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 79 TDIVILV-VAAD-DGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CCEEEEE-EETT-CCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred CCEEEEE-EECC-CCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 6788888 4332 234456667777664 46778999999999863
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=73.86 E-value=4.3 Score=37.46 Aligned_cols=50 Identities=20% Similarity=0.091 Sum_probs=27.7
Q ss_pred ceeeEeeecCCC-cccCCcchHHHHHhc----cCcceEEeeeecCCCC-----CHHHHHHHH
Q psy8479 589 LRCASKNSDLPL-AECLKSLDLVCMKKL----DSKVNIIPIIAKADTI-----SKSELQKFK 640 (650)
Q Consensus 589 vh~~lyf~i~pt-gh~l~~~Di~~mk~l----~~~vnviPvIaKaD~l-----t~~e~~~~K 640 (650)
.|+++++ +..+ ...+..+. .++..+ ...+.+|-|+.|+|.. +.++...+.
T Consensus 94 ~d~ii~v-~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 153 (191)
T 2a5j_A 94 AAGALLV-YDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA 153 (191)
T ss_dssp CSEEEEE-EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCEEEEE-EECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH
Confidence 5678888 4333 22222221 122222 4567899999999974 345554443
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.85 E-value=1.4 Score=38.97 Aligned_cols=44 Identities=16% Similarity=0.004 Sum_probs=27.8
Q ss_pred CceeeEeeecCCCcccCCcchHHHHHhcc-CcceEEeeeecCCCCCH
Q psy8479 588 RLRCASKNSDLPLAECLKSLDLVCMKKLD-SKVNIIPIIAKADTISK 633 (650)
Q Consensus 588 rvh~~lyf~i~ptgh~l~~~Di~~mk~l~-~~vnviPvIaKaD~lt~ 633 (650)
+.|+++|+ +..+. ++...+..+++.+. ....+|-|+.|+|....
T Consensus 79 ~~~~~i~v-~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 79 DAEVVLFA-VDGRA-ELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp TCSEEEEE-EESSS-CCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred hCCEEEEE-EECCC-cccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 35788888 54432 35555544444333 35678999999998764
No 468
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=73.75 E-value=11 Score=38.50 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=40.7
Q ss_pred eeEEEEEEcCCCCCCCcchH-HHHHHhc-cCCCeeeeeecccCCCHHHHHHHHHHHHHHHHHCCCcEEeCCC
Q psy8479 197 IHVCLYFICPTGHGLKSLDL-VCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPT 266 (650)
Q Consensus 197 VH~cLYfI~ps~h~Lk~lDI-~~mk~L~-~~vnvIPVItKAD~Lt~~El~~~K~~I~~~L~~~~I~if~f~~ 266 (650)
++++++++..+...+....+ .++..+. ..+++|.|+||+|.+...+... ...+.+.++..++.+|....
T Consensus 80 aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHTTCEEEECCT
T ss_pred cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHCCCeEEEEEC
Confidence 56778887765322222211 2333333 4679999999999998764221 22344455566788887753
No 469
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.54 E-value=1.3 Score=40.97 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.0
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+-+ +|.+|+||||+.+.|...
T Consensus 14 i~i-~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 14 ILL-TGTPGVGKTTLGKELASK 34 (180)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEE-EeCCCCCHHHHHHHHHHH
Confidence 455 999999999999999853
No 470
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=73.42 E-value=1.1 Score=48.17 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+|||||+++|+.-
T Consensus 32 ~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999874
No 471
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=72.96 E-value=1.4 Score=42.29 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=16.0
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|.+|+||||+.+.|..
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999975
No 472
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=72.89 E-value=1.8 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=16.9
Q ss_pred eEEeeeecCCCC--CHHHHHHHHHHHH
Q psy8479 620 NIIPIIAKADTI--SKSELQKFKVSKT 644 (650)
Q Consensus 620 nviPvIaKaD~l--t~~e~~~~K~~i~ 644 (650)
++|.|+.|.|.. ..+.+...+..+.
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~ 173 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETS 173 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHH
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHH
Confidence 589999999998 3554444444443
No 473
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=72.77 E-value=1.3 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.3
Q ss_pred CCceeecCCCCCChhhHhhhhh
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLF 127 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf 127 (650)
+|++.-+|.+|.||||++.+|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4443339999999999999874
No 474
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=72.73 E-value=3.9 Score=37.13 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=16.3
Q ss_pred cceEEeeeecCCCC-----CHHHHHHHHH
Q psy8479 618 KVNIIPIIAKADTI-----SKSELQKFKV 641 (650)
Q Consensus 618 ~vnviPvIaKaD~l-----t~~e~~~~K~ 641 (650)
.+.+|-|+.|+|.. +.++...+.+
T Consensus 111 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (181)
T 3t5g_A 111 QIPIMLVGNKKDLHMERVISYEEGKALAE 139 (181)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred CCCEEEEEECccchhcceecHHHHHHHHH
Confidence 56788999999973 5566555443
No 475
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.65 E-value=1.3 Score=41.15 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.4
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
-+-+ +|.+|+||||+.+.|...
T Consensus 7 ~i~l-~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYL-IGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHH
Confidence 3455 999999999999999754
No 476
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=72.55 E-value=0.89 Score=41.36 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.3
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+-+ +|.+|+|||||+..|...
T Consensus 45 ~vll-~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPIL-LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEE-ESCGGGCHHHHHHHHHHH
T ss_pred ceEE-ECCCCCCHHHHHHHHHHH
Confidence 3444 999999999999999875
No 477
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=72.54 E-value=3.2 Score=38.19 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=28.7
Q ss_pred ceeeEeeecCCCc-c---cCCcchHHHHHhc-cCcceEEeeeecCCCC-----CHHHHHHHH
Q psy8479 589 LRCASKNSDLPLA-E---CLKSLDLVCMKKL-DSKVNIIPIIAKADTI-----SKSELQKFK 640 (650)
Q Consensus 589 vh~~lyf~i~ptg-h---~l~~~Di~~mk~l-~~~vnviPvIaKaD~l-----t~~e~~~~K 640 (650)
.|+++|+ +..+. . .+....-++++.+ ...+.+|-|+.|+|.. +.++...+.
T Consensus 94 ~d~iilv-~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 154 (189)
T 1z06_A 94 VHAVVFV-YDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA 154 (189)
T ss_dssp CCEEEEE-EETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCEEEEE-EECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH
Confidence 5778888 43332 1 2222222233333 4567889999999985 345554443
No 478
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=72.54 E-value=1.5 Score=41.16 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=16.7
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|-+|+||||+.+.|...
T Consensus 10 ~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp ECCTTSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999864
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.54 E-value=1.2 Score=48.58 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.5
Q ss_pred ceeecCCCCCChhhHhhhhhCc
Q psy8479 108 KAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 108 ~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+.| +|.+|+||||+++.|...
T Consensus 102 I~i-vG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 102 ILL-VGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp EEE-ECCSSSSTTHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 456 999999999999999873
No 480
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=72.42 E-value=3.2 Score=37.22 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=39.0
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchH--
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDL-- 609 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di-- 609 (650)
.+..+.+++|||||... +. .-...|+.. .|+++|+++.-....+..+.-
T Consensus 60 ~~~~~~~~l~Dt~G~~~------~~-~~~~~~~~~----------------------~d~~i~v~d~~~~~s~~~~~~~~ 110 (179)
T 1z0f_A 60 SGQKIKLQIWDTAGQER------FR-AVTRSYYRG----------------------AAGALMVYDITRRSTYNHLSSWL 110 (179)
T ss_dssp TTEEEEEEEEECTTGGG------TC-HHHHHHHHT----------------------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred CCeEEEEEEEECCCChH------hh-hhHHHHhcc----------------------CCEEEEEEeCcCHHHHHHHHHHH
Confidence 34568899999999532 11 111223322 467888833222222222211
Q ss_pred HHHHhcc-CcceEEeeeecCCCCC
Q psy8479 610 VCMKKLD-SKVNIIPIIAKADTIS 632 (650)
Q Consensus 610 ~~mk~l~-~~vnviPvIaKaD~lt 632 (650)
..++.+. ..+.+|-|+.|+|...
T Consensus 111 ~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 111 TDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHhcCCCCcEEEEEECccccc
Confidence 1133332 5677899999999853
No 481
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=72.37 E-value=1.3 Score=41.33 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.3
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+ .|-+|+||||+.+.|...
T Consensus 4 ~l-~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 4 TF-EGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EE-ECSTTSSHHHHHHHHHHH
T ss_pred EE-ECCCCCCHHHHHHHHHHH
Confidence 34 899999999999999764
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.26 E-value=0.89 Score=45.65 Aligned_cols=17 Identities=35% Similarity=0.284 Sum_probs=16.2
Q ss_pred cCCCCCChhhHhhhhhC
Q psy8479 112 PCETGLGKSTLMDSLFN 128 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~ 128 (650)
+|++|+|||||+..|.+
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 99999999999999986
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=72.23 E-value=1.8 Score=40.77 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=39.7
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch---
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--- 608 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--- 608 (650)
++..+.|+||||||... ++.-...|+ . ..|+++++++.-....+..+.
T Consensus 53 ~~~~~~~~i~Dt~G~~~-------~~~~~~~~~--------------------~--~~d~~ilv~d~~~~~s~~~~~~~~ 103 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQED-------YSRLRPLSY--------------------R--GADIFVLAFSLISKASYENVLKKW 103 (212)
T ss_dssp SSCEEEEEEECCCCCCC-------CCC--CGGG--------------------T--TCSEEEEEEETTCHHHHHHHHHTH
T ss_pred CCEEEEEEEEECCCcHH-------HHHHHHhhc--------------------c--CCCEEEEEEECCCHHHHHHHHHHH
Confidence 45668999999999843 100101111 1 247788873322222232222
Q ss_pred HHHHHhccCcceEEeeeecCCCCC
Q psy8479 609 LVCMKKLDSKVNIIPIIAKADTIS 632 (650)
Q Consensus 609 i~~mk~l~~~vnviPvIaKaD~lt 632 (650)
+..++.....+.+|-|+.|+|...
T Consensus 104 ~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 104 MPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp HHHHHHHCTTCCEEEEEECHHHHT
T ss_pred HHHHHHhCCCCCEEEEEeCHHhhh
Confidence 223333344678999999999754
No 484
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=72.12 E-value=1.3 Score=41.68 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.5
Q ss_pred eeecCCCCCChhhHhhhhhCc
Q psy8479 109 AYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 109 ~FnVG~SGvGKSTlINtLf~~ 129 (650)
.| .|-+|+||||+.+.|...
T Consensus 8 ~i-~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 8 AF-EGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EE-ECCTTSSHHHHHHHHHHH
T ss_pred EE-EcCCCCCHHHHHHHHHHH
Confidence 44 999999999999999764
No 485
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=72.09 E-value=5.7 Score=36.90 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=24.8
Q ss_pred ceeeEeeecCCCcccCCcchHHHHHhc-----cCcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLDLVCMKKL-----DSKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~Di~~mk~l-----~~~vnviPvIaKaD~lt 632 (650)
.|+++|+++.-....+..+.- .+..+ .....+|-|..|+|...
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 578888844322333333332 22222 24577899999999864
No 486
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=71.52 E-value=4.7 Score=42.40 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred ccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcchHHH---
Q psy8479 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLDLVC--- 611 (650)
Q Consensus 535 ~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~Di~~--- 611 (650)
.+.|.||||+|..+- . .+. |+..+| ++ ..|+++|. +..+.. ... .+..
T Consensus 45 ~v~LqIWDTAGQErf------~-~~~--l~~~~y---------------yr--~a~~~IlV-~Ditd~-~~~-~~~~l~~ 95 (331)
T 3r7w_B 45 LIDLAVMELPGQLNY------F-EPS--YDSERL---------------FK--SVGALVYV-IDSQDE-YIN-AITNLAM 95 (331)
T ss_dssp SSCEEEEECCSCSSS------C-CCS--HHHHHH---------------HT--TCSEEEEE-CCCSSC-TTH-HHHHHHH
T ss_pred EEEEEEEECCCchhc------c-chh--hhhhhh---------------cc--CCCEEEEE-EECCch-HHH-HHHHHHH
Confidence 489999999998762 1 110 111111 11 25789988 545543 211 1222
Q ss_pred -H---HhccCcceEEeeeecCCCCCHHHHHH
Q psy8479 612 -M---KKLDSKVNIIPIIAKADTISKSELQK 638 (650)
Q Consensus 612 -m---k~l~~~vnviPvIaKaD~lt~~e~~~ 638 (650)
+ +...+.+.++-|..|+|....++...
T Consensus 96 ~l~~~~~~~~~ipillvgNK~DL~~~~~R~~ 126 (331)
T 3r7w_B 96 IIEYAYKVNPSINIEVLIHKVDGLSEDFKVD 126 (331)
T ss_dssp HHHHHHHHCTTCEEEEECCCCCSSCSHHHHH
T ss_pred HHHHHhhcCCCCcEEEEEECcccCchhhhhh
Confidence 2 23356788899999999998776543
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.38 E-value=4 Score=36.70 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=12.6
Q ss_pred CcceEEeeeecCCCC
Q psy8479 617 SKVNIIPIIAKADTI 631 (650)
Q Consensus 617 ~~vnviPvIaKaD~l 631 (650)
....+|-|+.|+|..
T Consensus 117 ~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 117 ETFPFVILGNKIDAE 131 (182)
T ss_dssp TTCCEEEEEECTTSC
T ss_pred CCCcEEEEEECCccc
Confidence 567789999999985
No 488
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.33 E-value=1.3 Score=42.14 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=18.3
Q ss_pred CceeecCCCCCChhhHhhhhhCc
Q psy8479 107 GKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 107 g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
.+-+ +|.+|+|||||+..|...
T Consensus 54 ~~ll-~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYL-WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred eEEE-ECCCCCCHHHHHHHHHHH
Confidence 3444 999999999999999864
No 489
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=71.30 E-value=3.4 Score=37.31 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=23.4
Q ss_pred ceeeEeeecCCCc-ccCCcchHHHHHhcc----CcceEEeeeecCCCCC
Q psy8479 589 LRCASKNSDLPLA-ECLKSLDLVCMKKLD----SKVNIIPIIAKADTIS 632 (650)
Q Consensus 589 vh~~lyf~i~ptg-h~l~~~Di~~mk~l~----~~vnviPvIaKaD~lt 632 (650)
.|+++++ +..+. ..+..+ ..++..+. ..+.+|-|+.|+|...
T Consensus 85 ~d~~i~v-~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 85 AAAAIIV-FDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp CSEEEEE-EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCEEEEE-EECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 4678887 43332 222221 12333332 3566888999999864
No 490
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=71.24 E-value=1.2 Score=49.59 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.8
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.||+|||||||+|...
T Consensus 173 aG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 173 AGTTGSGASVGVNAMILS 190 (512)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999864
No 491
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=71.23 E-value=2.4 Score=39.63 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=38.1
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcccCCcch--H
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAECLKSLD--L 609 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh~l~~~D--i 609 (650)
++..+.++||||||..+ +. .....|+.. .++++|+++.-....+..+. +
T Consensus 73 ~~~~~~l~i~Dt~G~~~------~~-~~~~~~~~~----------------------~d~iilv~d~~~~~s~~~~~~~~ 123 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQER------FR-SIAKSYFRK----------------------ADGVLLLYDVTCEKSFLNIREWV 123 (199)
T ss_dssp TTEEEEEEEEECTTCTT------CH-HHHHHHHHH----------------------CSEEEEEEETTCHHHHHTHHHHH
T ss_pred CCEEEEEEEEECCCCcc------hh-hhHHHHHhh----------------------CCEEEEEEECCChHHHHHHHHHH
Confidence 34567899999999643 11 122233322 45677773322222232222 2
Q ss_pred HHHHhcc-CcceEEeeeecCCCC
Q psy8479 610 VCMKKLD-SKVNIIPIIAKADTI 631 (650)
Q Consensus 610 ~~mk~l~-~~vnviPvIaKaD~l 631 (650)
..++... ..+.+|-|+.|+|..
T Consensus 124 ~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 124 DMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHhcCCCCCEEEEEECcccc
Confidence 2233322 467789999999975
No 492
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=70.98 E-value=1.4 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCceeecCCCCCChhhHhhhhhCc
Q psy8479 106 PGKAYKPCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 106 ~g~~FnVG~SGvGKSTlINtLf~~ 129 (650)
+++-| .|.+|+|||+|+.+|.+.
T Consensus 40 ~~vll-~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALL-LGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEE-ESCTTSSHHHHHHHHHHH
T ss_pred ceEEE-ECCCCCCHHHHHHHHHHH
Confidence 45556 999999999999999874
No 493
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=70.90 E-value=5 Score=36.79 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=25.1
Q ss_pred ceeeEeeecCCCcccCCcch---HHHHHhccCcceEEeeeecCCCC
Q psy8479 589 LRCASKNSDLPLAECLKSLD---LVCMKKLDSKVNIIPIIAKADTI 631 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D---i~~mk~l~~~vnviPvIaKaD~l 631 (650)
.|+++++++.-....+..+. +..+++....+.+|-|..|+|..
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 46777773422222232221 23344555678899999999986
No 494
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=70.86 E-value=1.6 Score=41.27 Aligned_cols=18 Identities=28% Similarity=0.088 Sum_probs=16.4
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
.|-+|+||||+.+.|...
T Consensus 16 ~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 999999999999999753
No 495
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.83 E-value=1.2 Score=46.18 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
+|.+|+||||++..|.+.
T Consensus 110 vG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHHH
Confidence 999999999999999874
No 496
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=70.80 E-value=3.5 Score=36.97 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=38.6
Q ss_pred CccccccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCC-cccCCcchHH
Q psy8479 532 ATTTLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPL-AECLKSLDLV 610 (650)
Q Consensus 532 ~~~~l~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~pt-gh~l~~~Di~ 610 (650)
++..+.+++|||||... +. .-...|+.. .|+++|+ +..+ ...+..+. .
T Consensus 59 ~~~~~~~~~~Dt~G~~~------~~-~~~~~~~~~----------------------~d~~i~v-~d~~~~~s~~~~~-~ 107 (179)
T 2y8e_A 59 EDRTVRLQLWDTAGQER------FR-SLIPSYIRD----------------------STVAVVV-YDITNTNSFHQTS-K 107 (179)
T ss_dssp TTEEEEEEEEEECCSGG------GG-GGSHHHHHT----------------------CSEEEEE-EETTCHHHHHTHH-H
T ss_pred CCeEEEEEEEECCCcHH------HH-HHHHHHhcC----------------------CCEEEEE-EECCCHHHHHHHH-H
Confidence 34567899999999432 11 111222222 4678887 4333 22222222 2
Q ss_pred HHHh----ccCcceEEeeeecCCCCC
Q psy8479 611 CMKK----LDSKVNIIPIIAKADTIS 632 (650)
Q Consensus 611 ~mk~----l~~~vnviPvIaKaD~lt 632 (650)
++.. ....+.+|-|+.|+|...
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccc
Confidence 2222 235677899999999864
No 497
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.77 E-value=1.2 Score=45.77 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.9
Q ss_pred cCCCCCChhhHhhhhhCc
Q psy8479 112 PCETGLGKSTLMDSLFNT 129 (650)
Q Consensus 112 VG~SGvGKSTlINtLf~~ 129 (650)
.|.+|+|||||++.+++.
T Consensus 51 ~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999874
No 498
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=70.67 E-value=1.8 Score=40.90 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=24.5
Q ss_pred ceeeEeeecCCCcccCCcch--HHHHHhc-cCcceEEeeeecCCCCCH
Q psy8479 589 LRCASKNSDLPLAECLKSLD--LVCMKKL-DSKVNIIPIIAKADTISK 633 (650)
Q Consensus 589 vh~~lyf~i~ptgh~l~~~D--i~~mk~l-~~~vnviPvIaKaD~lt~ 633 (650)
.|+++++++.-.+..+..+. +..++.+ ...+.+|-|+.|+|....
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 57788884433332232222 0223332 234789999999998764
No 499
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=70.60 E-value=0.74 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCceeecCCCCCChhhHhhhhh
Q psy8479 104 FIPGKAYKPCETGLGKSTLMDSLF 127 (650)
Q Consensus 104 ~k~g~~FnVG~SGvGKSTlINtLf 127 (650)
+.+|+++-+|++|+||||||.+|.
T Consensus 58 f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 58 LGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp CCCSEEEEEESHHHHHHHHTHHHH
T ss_pred cCCCeEEEEcCCCCCHHHHHHHHH
No 500
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=70.59 E-value=6.5 Score=42.88 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccccCCCCCcccccccccccccccccccccCCCCCCCCCCCCCCccCCCCceeeEeeecCCCcc-------cCCcchH
Q psy8479 537 GRGIVRSPGERKEKNAEFFSRAGVNNNVTSSLNGAGMPPARDWSPVRIPTTRLRCASKNSDLPLAE-------CLKSLDL 609 (650)
Q Consensus 537 ~ltivdtpGfg~~~~~~~~~~~~i~~yi~~q~~~~~~~~~~~~~~~~~~d~rvh~~lyf~i~ptgh-------~l~~~Di 609 (650)
.++||||||..+ +. ..+..++.. .++++++++.-.|- .-.....
T Consensus 122 ~~~iiDtPGh~~------f~-~~~~~~~~~----------------------aD~~ilVvDa~~g~~e~sf~~~~qt~e~ 172 (467)
T 1r5b_A 122 RFSLLDAPGHKG------YV-TNMINGASQ----------------------ADIGVLVISARRGEFEAGFERGGQTREH 172 (467)
T ss_dssp EEEECCCCC------------------TTS----------------------CSEEEEEEECSTTHHHHTTSTTCCHHHH
T ss_pred EEEEEECCCcHH------HH-HHHHhhccc----------------------CCEEEEEEeCCcCccccccCCCCcHHHH
Q ss_pred HHHHhccCcceEEeeeecCCCCC----HHHHHHHHHHHHhhc
Q psy8479 610 VCMKKLDSKVNIIPIIAKADTIS----KSELQKFKVSKTRVL 647 (650)
Q Consensus 610 ~~mk~l~~~vnviPvIaKaD~lt----~~e~~~~K~~i~~~l 647 (650)
-.+-.....-++|.|+.|.|... .+.+...+..+.+.+
T Consensus 173 l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l 214 (467)
T 1r5b_A 173 AVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFL 214 (467)
T ss_dssp HHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHH
Done!